Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/c/cnvkit/cnvkit_0.9.9-2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/cnvkit-0.9.9-2dc3e276p/cnvkit_0.9.9-2_amd64.buildinfo Get source package info: cnvkit=0.9.9-2 Source URL: http://snapshot.notset.fr/mr/package/cnvkit/0.9.9-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.4-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3+b2 binutils=2.37-7 binutils-common=2.37-7 binutils-x86-64-linux-gnu=2.37-7 bsdextrautils=2.37.2-3 bsdutils=1:2.37.2-3 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20211004 coreutils=8.32-4+b1 cpp=4:11.2.0-2 cpp-11=11.2.0-9 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-python=4.20201102+nmu1 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-lyx=2.3.6-1 fonts-urw-base35=20200910-1 g++=4:11.2.0-2 g++-11=11.2.0-9 gcc=4:11.2.0-2 gcc-11=11.2.0-9 gcc-11-base=11.2.0-9 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 help2man=1.48.5 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-9 libatomic1=11.2.0-9 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1 libbinutils=2.37-7 libblas3=3.10.0-1 libblkid1=2.37.2-3 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-9 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-7 libctf0=2.37-7 libcurl3-gnutls=7.74.0-1.3+b1 libcurl4=7.74.0-1.3+b1 libdatrie1=0.2.13-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.2 libdeflate0=1.8-1 libdpkg-perl=1.20.9 libelf1=0.185-2 libexpat1=2.4.1-2+b1 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.0-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.11.0+dfsg-1 libfribidi0=1.0.8-2 libgcc-11-dev=11.2.0-9 libgcc-s1=11.2.0-9 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.21-1 libgdbm6=1.21-1 libgfortran5=11.2.0-9 libglib2.0-0=2.70.0-1+b1 libgmp10=2:6.2.1+dfsg-2 libgnutls30=3.7.2-2 libgomp1=11.2.0-9 libgpg-error0=1.42-3 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libharfbuzz0b=2.7.4-1 libhogweed6=3.7.3-1 libhts3=1.13+ds-2 libhtscodecs2=1.1.1-3+b1 libice6=2:1.0.10-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libimagequant0=2.12.2-1.1 libisl23=0.24-2 libitm1=11.2.0-9 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.6-4 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui=1.12.1+dfsg-8 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-1 liblbfgsb0=3.0+dfsg.3-9 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.59+dfsg-1 liblocale-gettext-perl=1.07-4+b1 liblsan0=11.2.0-9 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.4-1 libmount1=2.37.2-3 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.2+20210905-1 libncursesw6=6.2+20210905-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.32-1 libnss3=2:3.70-1 libopenjp2-7=2.4.0-3 libp11-kit0=0.24.0-5 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpango-1.0-0=1.48.10+ds1-1 libpangocairo-1.0-0=1.48.10+ds1-1 libpangoft2-1.0-0=1.48.10+ds1-1 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.3-1 libpixman-1-0=0.40.0-1 libpng16-16=1.6.37-3 libpoppler102=20.09.0-3.1 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libpython3-stdlib=3.9.2-3 libpython3.9-minimal=3.9.7-4 libpython3.9-stdlib=3.9.7-4 libquadmath0=11.2.0-9 libraqm0=0.7.0-4 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.2-2 libselinux1=3.1-3 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-3 libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-9 libstdc++6=11.2.0-9 libsub-override-perl=0.09-2 libsystemd0=249.5-1 libtasn1-6=4.17.0-2 libtcl8.6=8.6.11+dfsg-1 libthai-data=0.1.28-4.1 libthai0=0.1.28-4.1 libtiff5=4.3.0-2 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtk8.6=8.6.11.1-1 libtool=2.4.6-15 libtsan0=11.2.0-9 libubsan1=11.2.0-9 libuchardet0=0.0.7-1 libudev1=249.5-1 libunistring2=0.9.10-6 libuuid1=2.37.2-3 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libxau6=1:1.0.9-1 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxft2=2.3.2-2 libxml2=2.9.12+dfsg-5 libxrender1=1:0.9.10-1 libxss1=1:1.2.3-1 libxt6=1:1.2.0-1 libyaml-0-2=0.2.2-1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.14.9-2 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.70 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 openssl=1.1.1l-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 poppler-utils=20.09.0-3.1 procps=2:3.3.17-5 python-matplotlib-data=3.3.4-2 python3=3.9.2-3 python3-all=3.9.2-3 python3-biopython=1.78+dfsg-6 python3-cycler=0.10.0-3 python3-dateutil=2.8.1-6 python3-decorator=4.4.2-2 python3-distutils=3.9.7-1 python3-future=0.18.2-5 python3-joblib=0.17.0-4 python3-kiwisolver=1.3.2-1 python3-lib2to3=3.9.7-1 python3-matplotlib=3.3.4-2 python3-minimal=3.9.2-3 python3-networkx=2.5+ds-2 python3-numpy=1:1.19.5-1 python3-pandas=1.1.5+dfsg-2 python3-pandas-lib=1.1.5+dfsg-2 python3-pil=8.3.2-1 python3-pkg-resources=58.2.0-1 python3-pomegranate=0.13.5-1 python3-pyfaidx=0.6.2-1 python3-pyparsing=2.4.7-1 python3-pysam=0.15.4+ds-3+b2 python3-renderpm=3.6.1-1 python3-reportlab=3.6.1-1 python3-reportlab-accel=3.6.1-1 python3-scipy=1.7.1-1 python3-setuptools=58.2.0-1 python3-six=1.16.0-2 python3-tz=2021.3-1 python3-vcf=0.6.8+git20170215.476169c-7+b3 python3-yaml=5.4.1-1 python3.9=3.9.7-4 python3.9-minimal=3.9.7-4 r-base-core=4.1.1-2 r-bioc-biocgenerics=0.38.0-1 r-bioc-dnacopy=1.66.0-1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 ttf-bitstream-vera=1.10-8.1 tzdata=2021c-2 ucf=3.0043 unzip=6.0-26 util-linux=2.37.2-3 x11-common=1:7.7+23 xdg-utils=1.1.3-4.1 xz-utils=5.2.5-2 zip=3.0-12 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211120T210700Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211014T085745Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d cnvkit=0.9.9-2 && mkdir -p /build/cnvkit-R0zOVX && dpkg-source --no-check -x /*.dsc /build/cnvkit-R0zOVX/cnvkit-0.9.9 && chown -R builduser:builduser /build/cnvkit-R0zOVX" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/cnvkit-R0zOVX/cnvkit-0.9.9 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634280066" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/cnvkit-R0zOVX /tmp/cnvkit-0.9.9-2dc3e276p bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211014T085745Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.utNvDwvgKW as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.utNvDwvgKW Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-3). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211014T085745Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211014T085745Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (969 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4667 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211120T210700Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211014T085745Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.utNvDwvgKW Get:1 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm InRelease [128 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211120T210700Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20211014T085745Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main Sources [11.7 MB] Get:5 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211120T210700Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20211120T210700Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20211120T210700Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211120T210700Z unstable/main amd64 Packages [12.0 MB] Fetched 35.2 MB in 28s (1251 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.utNvDwvgKW I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d cnvkit=0.9.9-2 && mkdir -p /build/cnvkit-R0zOVX && dpkg-source --no-check -x /*.dsc /build/cnvkit-R0zOVX/cnvkit-0.9.9 && chown -R builduser:builduser /build/cnvkit-R0zOVX"' exec /tmp/mmdebstrap.utNvDwvgKW Reading package lists... NOTICE: 'cnvkit' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/cnvkit.git Please use: git clone https://salsa.debian.org/med-team/cnvkit.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 23.7 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main cnvkit 0.9.9-2 (dsc) [2349 B] Get:2 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main cnvkit 0.9.9-2 (tar) [23.7 MB] Get:3 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main cnvkit 0.9.9-2 (diff) [6236 B] Fetched 23.7 MB in 21s (1104 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'cnvkit_0.9.9-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting cnvkit in /build/cnvkit-R0zOVX/cnvkit-0.9.9 dpkg-source: info: unpacking cnvkit_0.9.9.orig.tar.gz dpkg-source: info: unpacking cnvkit_0.9.9-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-py-ext dpkg-source: info: applying python3compat.patch dpkg-source: info: applying spelling dpkg-source: info: applying controldir I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/cnvkit-R0zOVX/cnvkit-0.9.9 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634280066" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.utNvDwvgKW dpkg-buildpackage: info: source package cnvkit dpkg-buildpackage: info: source version 0.9.9-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/cnvkit-R0zOVX/cnvkit-0.9.9' cd test && /usr/bin/make clean || /bin/true make[2]: Entering directory '/build/cnvkit-R0zOVX/cnvkit-0.9.9/test' # Picard rm -rf build/p*targetcoverage.cnn build/reference-picard.cnn build/p2-5_5.cnr build/p2-9_2.cnr build/p2-20_1.cnr build/p2-20_2.cnr build/p2-20_3.cnr build/p2-20_4.cnr build/p2-20_5.cnr build/p2-5_5.cns build/p2-9_2.cns build/p2-20_1.cns build/p2-20_2.cns build/p2-20_3.cns build/p2-20_4.cns build/p2-20_5.cns all-scatters.pdf all-diagrams.pdf heatmap-picard.pdf p2-9_2-breaks.txt p2-9_2-genemetrics.txt gender-picard.txt p2-all.cdt p2-all-jtv.txt p2-all.seg p2-9_2.nexus p2-9_2.nexus-ogt p2-all.bed p2-9_2.vcf p2-9_2.theta2.input p2-9_2-segmetrics.cns p2-5_5-segmetrics.cns p*-scatter.pdf p*-diagram.pdf make[2]: Leaving directory '/build/cnvkit-R0zOVX/cnvkit-0.9.9/test' if [ -f cnvkit ]; then mv cnvkit cnvkit.py; fi dh_auto_clean I: pybuild base:232: python3.9 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( running clean removing '/build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf test/p2-20-metrics.tsv test/p2-5_5-metrics.tsv test/p2-9_2-metrics.tsv rm -rf test/build CNVkit.egg-info make[1]: Leaving directory '/build/cnvkit-R0zOVX/cnvkit-0.9.9' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/cnvkit-R0zOVX/cnvkit-0.9.9' [ -f cnvkit.py ] && mv cnvkit.py cnvkit || true # may not exist after interrupted build if [ -f scripts/cnv_annotate.py ]; then \ cd scripts && for script in *.py; do \ mv ${script} cnvkit-${script%%.py}; \ done; \ fi dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( running build running build_py creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/__init__.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/_version.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/access.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/antitarget.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/autobin.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/batch.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/bintest.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/call.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/cluster.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/cmdutil.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/cnary.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/core.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/coverage.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/descriptives.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/diagram.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/export.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/fix.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/heatmap.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/import_rna.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/importers.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/metrics.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/parallel.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/params.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/plots.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/reference.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/reports.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/rna.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/samutil.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/scatter.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/segfilters.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/segmetrics.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/smoothing.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/target.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/vary.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib copying cnvlib/commands.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation copying cnvlib/segmentation/__init__.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation copying cnvlib/segmentation/cbs.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation copying cnvlib/segmentation/flasso.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation copying cnvlib/segmentation/haar.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation copying cnvlib/segmentation/hmm.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation copying cnvlib/segmentation/none.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome copying skgenome/__init__.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome copying skgenome/chromsort.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome copying skgenome/combiners.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome copying skgenome/gary.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome copying skgenome/intersect.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome copying skgenome/merge.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome copying skgenome/rangelabel.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome copying skgenome/subdivide.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome copying skgenome/subtract.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio copying skgenome/tabio/__init__.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio copying skgenome/tabio/bedio.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio copying skgenome/tabio/genepred.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio copying skgenome/tabio/gff.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio copying skgenome/tabio/picard.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio copying skgenome/tabio/seg.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio copying skgenome/tabio/seqdict.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio copying skgenome/tabio/tab.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio copying skgenome/tabio/textcoord.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio copying skgenome/tabio/util.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio copying skgenome/tabio/vcfio.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio copying skgenome/tabio/vcfsimple.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio running build_scripts creating build creating build/scripts-3.9 copying and adjusting /build/cnvkit-R0zOVX/cnvkit-0.9.9/cnvkit -> build/scripts-3.9 copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/scripts/snpfilter.sh -> build/scripts-3.9 copying and adjusting /build/cnvkit-R0zOVX/cnvkit-0.9.9/scripts/cnvkit-cnv_annotate -> build/scripts-3.9 copying and adjusting /build/cnvkit-R0zOVX/cnvkit-0.9.9/scripts/cnvkit-cnv_expression_correlate -> build/scripts-3.9 copying and adjusting /build/cnvkit-R0zOVX/cnvkit-0.9.9/scripts/cnvkit-cnv_updater -> build/scripts-3.9 copying and adjusting /build/cnvkit-R0zOVX/cnvkit-0.9.9/scripts/cnvkit-genome_instability_index -> build/scripts-3.9 copying and adjusting /build/cnvkit-R0zOVX/cnvkit-0.9.9/scripts/cnvkit-guess_baits -> build/scripts-3.9 copying and adjusting /build/cnvkit-R0zOVX/cnvkit-0.9.9/scripts/cnvkit-reference2targets -> build/scripts-3.9 copying and adjusting /build/cnvkit-R0zOVX/cnvkit-0.9.9/scripts/cnvkit-skg_convert -> build/scripts-3.9 changing mode of build/scripts-3.9/cnvkit from 644 to 755 changing mode of build/scripts-3.9/cnvkit-cnv_annotate from 644 to 755 changing mode of build/scripts-3.9/cnvkit-cnv_expression_correlate from 644 to 755 changing mode of build/scripts-3.9/cnvkit-cnv_updater from 644 to 755 changing mode of build/scripts-3.9/cnvkit-genome_instability_index from 644 to 755 changing mode of build/scripts-3.9/cnvkit-guess_baits from 644 to 755 changing mode of build/scripts-3.9/cnvkit-reference2targets from 644 to 755 changing mode of build/scripts-3.9/cnvkit-skg_convert from 644 to 755 cd scripts && for script in cnvkit-*; do \ mv ${script} ${script##cnvkit-}.py; \ done mv cnvkit cnvkit.py make[1]: Leaving directory '/build/cnvkit-R0zOVX/cnvkit-0.9.9' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/cnvkit-R0zOVX/cnvkit-0.9.9' [ -f cnvkit.py ] && mv cnvkit.py cnvkit || true # may not exist after interrupted install if [ -f scripts/cnv_annotate.py ]; then \ cd scripts && for script in *.py; do \ mv ${script} cnvkit-${script%%.py}; \ done; \ fi dh_auto_install I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( running install running build running build_py running build_scripts running install_lib creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9 creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/__init__.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/_version.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/access.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/antitarget.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/autobin.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/batch.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/bintest.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/call.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/cluster.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/cmdutil.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/cnary.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/core.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/coverage.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/descriptives.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/diagram.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/export.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/fix.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/heatmap.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/import_rna.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/importers.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/metrics.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/parallel.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/params.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/plots.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/reference.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/reports.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/rna.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/samutil.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/scatter.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segfilters.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmetrics.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/smoothing.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/target.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/vary.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/commands.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation/__init__.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation/cbs.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation/flasso.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation/haar.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation/hmm.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/cnvlib/segmentation/none.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/__init__.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/chromsort.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/combiners.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/gary.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/intersect.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/merge.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/rangelabel.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/subdivide.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/subtract.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio/__init__.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio/bedio.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio/genepred.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio/gff.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio/picard.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio/seg.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio/seqdict.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio/tab.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio/textcoord.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio/util.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio/vcfio.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio copying /build/cnvkit-R0zOVX/cnvkit-0.9.9/.pybuild/cpython3_3.9_cnvkit/build/skgenome/tabio/vcfsimple.py -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/__init__.py to __init__.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/_version.py to _version.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/access.py to access.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/antitarget.py to antitarget.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/autobin.py to autobin.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/batch.py to batch.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/bintest.py to bintest.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/call.py to call.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/cluster.py to cluster.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/cmdutil.py to cmdutil.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/cnary.py to cnary.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/core.py to core.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/coverage.py to coverage.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/descriptives.py to descriptives.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/diagram.py to diagram.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/export.py to export.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/fix.py to fix.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/heatmap.py to heatmap.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/import_rna.py to import_rna.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/importers.py to importers.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/metrics.py to metrics.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/parallel.py to parallel.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/params.py to params.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/plots.py to plots.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/reference.py to reference.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/reports.py to reports.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/rna.py to rna.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/samutil.py to samutil.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/scatter.py to scatter.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segfilters.py to segfilters.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmetrics.py to segmetrics.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/smoothing.py to smoothing.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/target.py to target.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/vary.py to vary.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/commands.py to commands.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation/__init__.py to __init__.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation/cbs.py to cbs.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation/flasso.py to flasso.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation/haar.py to haar.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation/hmm.py to hmm.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/cnvlib/segmentation/none.py to none.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/__init__.py to __init__.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/chromsort.py to chromsort.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/combiners.py to combiners.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/gary.py to gary.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/intersect.py to intersect.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/merge.py to merge.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/rangelabel.py to rangelabel.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/subdivide.py to subdivide.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/subtract.py to subtract.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio/__init__.py to __init__.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio/bedio.py to bedio.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio/genepred.py to genepred.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio/gff.py to gff.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio/picard.py to picard.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio/seg.py to seg.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio/seqdict.py to seqdict.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio/tab.py to tab.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio/textcoord.py to textcoord.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio/util.py to util.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio/vcfio.py to vcfio.cpython-39.pyc byte-compiling /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/skgenome/tabio/vcfsimple.py to vcfsimple.cpython-39.pyc running install_egg_info running egg_info creating CNVkit.egg-info writing CNVkit.egg-info/PKG-INFO writing dependency_links to CNVkit.egg-info/dependency_links.txt writing requirements to CNVkit.egg-info/requires.txt writing top-level names to CNVkit.egg-info/top_level.txt writing manifest file 'CNVkit.egg-info/SOURCES.txt' reading manifest file 'CNVkit.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'CNVkit.egg-info/SOURCES.txt' Copying CNVkit.egg-info to /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/lib/python3.9/dist-packages/CNVkit-0.9.9.egg-info Skipping SOURCES.txt running install_scripts creating /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin copying build/scripts-3.9/cnvkit -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin copying build/scripts-3.9/snpfilter.sh -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin copying build/scripts-3.9/cnvkit-cnv_annotate -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin copying build/scripts-3.9/cnvkit-cnv_expression_correlate -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin copying build/scripts-3.9/cnvkit-cnv_updater -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin copying build/scripts-3.9/cnvkit-genome_instability_index -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin copying build/scripts-3.9/cnvkit-guess_baits -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin copying build/scripts-3.9/cnvkit-reference2targets -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin copying build/scripts-3.9/cnvkit-skg_convert -> /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin changing mode of /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin/cnvkit to 755 changing mode of /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin/snpfilter.sh to 755 changing mode of /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin/cnvkit-cnv_annotate to 755 changing mode of /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin/cnvkit-cnv_expression_correlate to 755 changing mode of /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin/cnvkit-cnv_updater to 755 changing mode of /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin/cnvkit-genome_instability_index to 755 changing mode of /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin/cnvkit-guess_baits to 755 changing mode of /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin/cnvkit-reference2targets to 755 changing mode of /build/cnvkit-R0zOVX/cnvkit-0.9.9/debian/cnvkit/usr/bin/cnvkit-skg_convert to 755 help2man --no-info --version-option=version \ --name="a command-line toolkit for copy number analysis." \ ./cnvkit > debian/cnvkit.1 PYTHONPATH=$PYTHONPATH:. debian/genmanpages.py 0.9.9 Matplotlib created a temporary config/cache directory at /tmp/matplotlib-ek_085_v because the default path (/nonexistent/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. cd scripts && PYTHONPATH=../ help2man --no-info \ --version-string=0.9.9 --help-option='-h' \ ./cnvkit-reference2targets --name='Extract target and antitarget BED files from a CNVkit reference file.' \ > ../debian/cnvkit-reference2targets.1; cd scripts && for script in cnvkit-*; do \ mv ${script} ${script##cnvkit-}.py; \ done mv cnvkit cnvkit.py make[1]: Leaving directory '/build/cnvkit-R0zOVX/cnvkit-0.9.9' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'cnvkit' in '../cnvkit_0.9.9-2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../cnvkit_0.9.9-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/cnvkit-R0zOVX /tmp/cnvkit-0.9.9-2dc3e276p I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.utNvDwvgKW... I: success in 4261.1106 seconds md5: cnvkit_0.9.9-2_amd64.deb: OK sha1: cnvkit_0.9.9-2_amd64.deb: OK sha256: cnvkit_0.9.9-2_amd64.deb: OK Checksums: OK