Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/c/cbflib/cbflib_0.9.6+dfsg1-3+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/cbflib-0.9.6+dfsg1-3+b1wlbtgz0f/cbflib_0.9.6+dfsg1-3+b1_amd64.buildinfo Get source package info: cbflib=0.9.6+dfsg1-3 Source URL: http://snapshot.notset.fr/mr/package/cbflib/0.9.6+dfsg1-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3.1 binutils=2.37-9 binutils-common=2.37-9 binutils-x86-64-linux-gnu=2.37-9 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-10 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-python=5.20211114 dh-strip-nondeterminism=1.12.0-2 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-10 gcc=4:11.2.0-2 gcc-11=11.2.0-10 gcc-11-base=11.2.0-10 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-10 libatomic1=11.2.0-10 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1 libbinutils=2.37-9 libblkid1=2.37.2-4 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-10 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.26-1 libcrypt1=1:4.4.26-1 libctf-nobfd0=2.37-9 libctf0=2.37-9 libcurl4=7.79.1-2 libcurl4-openssl-dev=7.79.1-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdpkg-perl=1.20.9 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.1-3 libexpat1-dev=2.4.1-3 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.0-2 libgcc-11-dev=11.2.0-10 libgcc-s1=11.2.0-10 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran5=11.2.0-10 libglib2.0-0=2.70.1-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-2 libgomp1=11.2.0-10 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-10 libjpeg-dev=1:2.1.1-2 libjpeg62-turbo=1:2.1.1-2 libjpeg62-turbo-dev=1:2.1.1-2 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjs-sphinxdoc=4.2.0-5 libjs-underscore=1.9.1~dfsg-4 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-10 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.4-1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.3-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-5 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpsl5=0.21.0-1.2 libpython3-all-dev=3.9.8-1 libpython3-dev=3.9.8-1 libpython3-stdlib=3.9.8-1 libpython3.10=3.10.0-5 libpython3.10-dev=3.10.0-5 libpython3.10-minimal=3.10.0-5 libpython3.10-stdlib=3.10.0-5 libpython3.9=3.9.9-1 libpython3.9-dev=3.9.9-1 libpython3.9-minimal=3.9.9-1 libpython3.9-stdlib=3.9.9-1 libquadmath0=11.2.0-10 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-1 libsasl2-modules-db=2.1.27+dfsg2-1 libseccomp2=2.5.2-2 libselinux1=3.3-1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-4 libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl-dev=1.1.1l-1 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-10 libstdc++6=11.2.0-10 libsub-override-perl=0.09-2 libsystemd0=249.6-2 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-10 libubsan1=11.2.0-10 libuchardet0=0.0.7-1 libudev1=249.6-2 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libxml2=2.9.12+dfsg-5+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.14.16-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.70 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncurses-base=6.3-1 ncurses-bin=6.3-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 python3=3.9.8-1 python3-all=3.9.8-1 python3-all-dev=3.9.8-1 python3-dev=3.9.8-1 python3-distutils=3.9.9-2 python3-lib2to3=3.9.9-2 python3-minimal=3.9.8-1 python3.10=3.10.0-5 python3.10-dev=3.10.0-5 python3.10-minimal=3.10.0-5 python3.9=3.9.9-1 python3.9-dev=3.9.9-1 python3.9-minimal=3.9.9-1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 tzdata=2021e-1 util-linux=2.37.2-4 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210925T024544Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210925T024544Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220102T024729Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211118T084946Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d cbflib=0.9.6+dfsg1-3 && mkdir -p /build/cbflib-byGSW9 && dpkg-source --no-check -x /*.dsc /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1 && cd /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1 && { printf '%s' 'cbflib (0.9.6+dfsg1-3+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Add Python 3.10 as supported version -- amd64 / i386 Build Daemon (x86-ubc-01) Thu, 18 Nov 2021 10:10:14 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/cbflib-byGSW9" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1637230214" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/cbflib-byGSW9 /tmp/cbflib-0.9.6+dfsg1-3+b1wlbtgz0f bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211118T084946Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.eWOZe4fnj5 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.eWOZe4fnj5 Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211118T084946Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211118T084946Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1018 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4669 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210925T024544Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210925T024544Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220102T024729Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211118T084946Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.eWOZe4fnj5 Get:1 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm InRelease [128 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220102T024729Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20211118T084946Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main Sources [11.6 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220102T024729Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220102T024729Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220102T024729Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220102T024729Z unstable/main amd64 Packages [12.0 MB] Fetched 35.2 MB in 32s (1094 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.eWOZe4fnj5 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d cbflib=0.9.6+dfsg1-3 && mkdir -p /build/cbflib-byGSW9 && dpkg-source --no-check -x /*.dsc /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1 && cd /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1 && { printf '%s' 'cbflib (0.9.6+dfsg1-3+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Add Python 3.10 as supported version -- amd64 / i386 Build Daemon (x86-ubc-01) Thu, 18 Nov 2021 10:10:14 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/cbflib-byGSW9"' exec /tmp/mmdebstrap.eWOZe4fnj5 Reading package lists... NOTICE: 'cbflib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/cbflib.git Please use: git clone https://salsa.debian.org/science-team/cbflib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 5526 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main cbflib 0.9.6+dfsg1-3 (dsc) [2442 B] Get:2 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main cbflib 0.9.6+dfsg1-3 (tar) [5499 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210925T024544Z bookworm/main cbflib 0.9.6+dfsg1-3 (diff) [24.9 kB] Fetched 5526 kB in 4s (1259 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'cbflib_0.9.6+dfsg1-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting cbflib in /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1 dpkg-source: info: unpacking cbflib_0.9.6+dfsg1.orig.tar.xz dpkg-source: info: unpacking cbflib_0.9.6+dfsg1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-makefile-fix-Get-system-HDF5-config-from-pkg-config.patch dpkg-source: info: applying 0002-makefile-fix-Fix-CBFLIB_DONT_USE_LOCAL_TIFF-config-v.patch dpkg-source: info: applying 0003-makefile-fix-Allow-disabling-PyCBF-from-env-with-NOP.patch dpkg-source: info: applying 0004-makefile-fix-Install-libs-to-CBF_PREFIX-INSTALL_LIB.patch dpkg-source: info: applying 0005-makefile-fix-Install-lib-to-SOVERSION-and-add-symlin.patch dpkg-source: info: applying 0006-makefile-fix-Allow-disabling-libimg-and-libfcb-build.patch dpkg-source: info: applying 0007-trailing-spaces.patch dpkg-source: info: applying 0007-makefile-fix-Do-not-link-example-progs-w.-libimg.patch dpkg-source: info: applying 0008-makefile-fix-Add-SONAME-to-linker-flags.patch dpkg-source: info: applying 0009-makefile-fix-Pick-up-CFLAGS-and-LDFLAGS-from-the-env.patch dpkg-source: info: applying 0010-makefile-fix-Prepend-CPPFLAGS-value-to-CFLAGS.patch dpkg-source: info: applying 0011-makefile-fix-Add-LDFLAGS-to-SOLDFLAGS-to-pick-up-har.patch dpkg-source: info: applying 0013-makefile-deb-Use-DESTDIR-usr-as-CBF_PREFIX.patch dpkg-source: info: applying 0014-makefile-deb-Do-not-build-tiff2cbf.patch dpkg-source: info: applying 0016-cross.patch dpkg-source: info: applying 0016-add-missing-LdFLAG-to-cbf_testxfelread.patch dpkg-source: info: applying 0017-Added-an-extra_compile_args-to-setup.py.patch dpkg-source: info: applying 0018-fix-the-FTBFS-with-missing-m4-Makefile.m4.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1637230214" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.eWOZe4fnj5 dpkg-buildpackage: info: source package cbflib dpkg-buildpackage: info: source version 0.9.6+dfsg1-3+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-ubc-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' dh_auto_clean make -j1 distclean make[2]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' ./.undosymlinks make[2]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' /usr/bin/make 'C++:=$(CXX)' /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Dregexlibdir=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib -Dhdf5_prefix=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1 -Dextra_compile_args=-I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/m4/setup_py.m4 > /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' dh_auto_clean --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:237: python3.10 setup.py clean /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/pycbf/setup.py:7: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running clean removing '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.10_pycbf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it I: pybuild base:237: python3.9 setup.py clean running clean removing '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -f pycbf/setup.py make[1]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary-arch dh binary-arch --no-parallel dh_update_autotools_config -a -O--no-parallel dh_autoreconf -a -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' dh_auto_configure /usr/bin/make 'C++:=$(CXX)' /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Dregexlibdir=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib -Dhdf5_prefix=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1 -Dextra_compile_args=-I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/m4/setup_py.m4 > /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' dh_auto_configure --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:237: python3.10 setup.py config /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/pycbf/setup.py:7: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running config I: pybuild base:237: python3.9 setup.py config running config make[1]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' # build the C/C++ library dh_auto_build -- 'C++:=$(CXX)' all make -j1 "INSTALL=install --strip-program=true" C\+\+:=\$\(CXX\) all make[2]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' (cd /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_exit_binary.m4) > /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/fcb_exit_binary.f90 (cd /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_next_binary.m4) > /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/fcb_next_binary.f90 (cd /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_open_cifin.m4) > /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/fcb_open_cifin.f90 (cd /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_packed.m4) > /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/fcb_packed.f90 (cd /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_bits.m4) > /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/fcb_read_bits.f90 (cd /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_image.m4) > /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/fcb_read_image.f90 (cd /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_xds_i2.m4) > /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/fcb_read_xds_i2.f90 chmod a+x .symlinks chmod a+x .undosymlinks chmod a+x doc/.symlinks chmod a+x doc/.undosymlinks ./.symlinks --use_ln touch symlinksdone rm -f /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX \ -DCBF_FILTER_STATIC -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial -c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_airy_disk.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_alloc.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_ascii.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_binary.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_byte_offset.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_canonical.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_codes.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_compress.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_copy.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_file.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_getopt.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5_filter.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_lex.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_packed.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_predictor.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_read_binary.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_read_mime.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_simple.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_string.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_stx.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_tree.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_uncompressed.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_write.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_write_binary.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_ws.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbff.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/md5c.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/fgetln.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c: In function ‘cbf_select_saveframe’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:2498:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2498 | if (!handle) | ^~ In file included from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:256: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf.h:895:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 895 | #define cbf_failnez(f) { int err; err = (f); if (err) return err; } | ^ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:2505:5: note: in expansion of macro ‘cbf_failnez’ 2505 | cbf_failnez (cbf_find_parent (&node, handle->node, CBF_DATABLOCK)) | ^~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c: In function ‘cbf_convert_dictionary_definition’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:5602:25: warning: ‘itemname’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5602 | if (parent_name && child_name) { | ~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:266: In function ‘strncpy’, inlined from ‘cbf_validate’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:7605:6: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘cbf_validate’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:7686:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_codes.c: In function ‘cbf_frombase32k’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_codes.c:1357:16: warning: ‘*enc’ may be used uninitialized [-Wmaybe-uninitialized] 1357 | if((enc[0] == '\xFF' && enc[1] == '\xFE' && cbf_isBigEndian() == 0) || (enc[0] == '\xFE' && enc[1] == '\xFF' && cbf_isBigEndian() !=0)) | ~~~^~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c:937:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c:922:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfcat_op’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20819:38: warning: implicit declaration of function ‘cbf_read_h5file_group’; did you mean ‘cbf_read_h5file’? [-Wimplicit-function-declaration] 20819 | error |= cbf_read_h5file_group(cbf,nx,nx->flags,(hid_t)object); | ^~~~~~~~~~~~~~~~~~~~~ | cbf_read_h5file /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20811:48: warning: unused variable ‘indent’ [-Wunused-variable] 20811 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20784:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20784 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfdb_op’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20933:48: warning: unused variable ‘indent’ [-Wunused-variable] 20933 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20906:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20906 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__entry_op’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21797:48: warning: unused variable ‘indent’ [-Wunused-variable] 21797 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21716:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 21716 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22516:36: warning: variable ‘node’ set but not used [-Wunused-but-set-variable] 22516 | cbf_node * node = NULL; | ^~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22110:30: warning: variable ‘data_row’ set but not used [-Wunused-but-set-variable] 22110 | unsigned int data_row = ~0x0; | ^~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22836:32: warning: variable ‘diffrn_scan_axis’ set but not used [-Wunused-but-set-variable] 22836 | cbf_node * diffrn_scan_axis = NULL; | ^~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__array_structure_list_axis’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26493:50: warning: unused variable ‘rotation_axis_path’ [-Wunused-variable] 26493 | const char * rotation_axis_path = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__cbf_general_axes’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26704:26: warning: unused variable ‘equipment_component’ [-Wunused-variable] 26704 | const char * equipment_component = NULL; | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__axis’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:27034:28: warning: variable ‘axis_rotation_axis’ set but not used [-Wunused-but-set-variable] 27034 | cbf_node * axis_rotation_axis = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_h5ds_store_as_column’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:40: warning: unused variable ‘close’ [-Wunused-variable] 29166 | char open, close; | ^~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:34: warning: unused variable ‘open’ [-Wunused-variable] 29166 | char open, close; | ^~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28931:21: warning: variable ‘type_order’ set but not used [-Wunused-but-set-variable] 28931 | H5T_order_t type_order; | ^~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28925:16: warning: unused variable ‘byte_order’ [-Wunused-variable] 28925 | char * byte_order; | ^~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28903:14: warning: unused variable ‘buffer’ [-Wunused-variable] 28903 | char buffer[25]; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_object_visit’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:42: warning: variable ‘checked_digest’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:36: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30708:32: warning: variable ‘atcbf’ set but not used [-Wunused-but-set-variable] 30708 | int save_incbf, incbf, atcbf; /* within or at NXpdb or CBF_cif, etc. */ | ^~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30707:36: warning: unused variable ‘atnexus’ [-Wunused-variable] 30707 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_read_h5file_group’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31937:13: warning: unused variable ‘errorcode’ [-Wunused-variable] 31937 | int errorcode = 0; | ^~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31933:19: warning: unused variable ‘node’ [-Wunused-variable] 31933 | cbf_node *node; | ^~~~ At top level: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20853:16: warning: ‘cbf_write_nx2cbf__cbfdb_op’ defined but not used [-Wunused-function] 20853 | static int cbf_write_nx2cbf__cbfdb_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20641:16: warning: ‘cbf_write_nx2cbf__cbfcat_op’ defined but not used [-Wunused-function] 20641 | static int cbf_write_nx2cbf__cbfcat_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:9133:16: warning: ‘cbf_require_nxdetectors’ defined but not used [-Wunused-function] 9133 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_get_nxdata_field_name2.isra’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:37: warning: ‘%06d’ directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] 6345 | sprintf(buffer,"%06d",block); | ^~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:36: note: directive argument in the range [1, 2147483647] 6345 | sprintf(buffer,"%06d",block); | ^~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:258: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 11 bytes into a destination of size 7 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_add_h5text_dataset_slab’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:13516:37: warning: ‘anondataset’ may be used uninitialized [-Wmaybe-uninitialized] 13516 | cbf_h5reportneg(H5Dset_extent(anondataset,curdim),CBF_FORMAT,errorcode); /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:888:32: note: in definition of macro ‘cbf_h5reportneg’ 888 | {int err; if (!(cerr)) {err = (x); if (err < 0) {(cerr)|=code;}}} | ^ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:13391:15: note: ‘anondataset’ declared here 13391 | hid_t anondataset; | ^~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17932:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17934:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18014:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18016:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23197:42: warning: ‘offset[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23197 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[2])); | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23195:42: warning: ‘offset[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23195 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[1])); | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23193:42: warning: ‘offset[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23193 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[0])); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string.part.0’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function ‘cbf_append_string.part.0’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9, inlined from ‘cbf_append_string’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:293:16, inlined from ‘cbf_set_minicbf_header’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:429:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c: In function ‘cbf_compress_nibble_offset’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:936:21: warning: ‘dmode’ may be used uninitialized [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:579:13: note: ‘dmode’ declared here 579 | int dmode[CBF_NIBBLE_RUN],maxmode,minmode,newmode,nextmaxmode,tempmode; | ^~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_stx.c: In function ‘cbf_lex_wrapper’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_stx.c:370:13: warning: variable ‘cbffile’ set but not used [-Wunused-but-set-variable] 370 | cbf_file *cbffile; | ^~~~~~~ At top level: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_stx.c:827:26: warning: ‘yytname’ defined but not used [-Wunused-const-variable=] 827 | static const char *const yytname[] = | ^~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_read_mar345header’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of ‘char[65]’ [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing ‘C64’ 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:12: In function ‘memcpy’, inlined from ‘img_set_tags’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1784:7, inlined from ‘img_set_tags’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1761:5, inlined from ‘img_free_handle’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1844:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:10: warning: ‘__builtin___memcpy_chk’ writing between 18446744039349813248 and 18446744073709551600 bytes into a region of size 0 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_free_handle’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1773:28: note: destination object of size 0 allocated by ‘malloc’ 1773 | img->tag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ar cr /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib/libcbf.a *.o /usr/bin/ranlib /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/adscimg2cbf In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:1: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c: In function ‘main’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:245:27: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 245 | strstrhit = cbf_cistrnstr(argv[iarg], flags[j], strlen(flags[j])); | ^ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:176:17: warning: unused variable ‘thickness’ [-Wunused-variable] 176 | double thickness=0.; | ^~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:162:25: warning: variable ‘cbf_status’ set but not used [-Wunused-but-set-variable] 162 | int cbf_status; | ^~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:13: In function ‘strncpy’, inlined from ‘gethd.constprop’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:31:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c: In function ‘gethd.constprop’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:28:7: note: length computed here 28 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘adscimg2cbf_sub2’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:793:20: warning: passing argument 1 of ‘convertroi’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 793 | if (convertroi(roi, smv_size1, smv_size2, | ^~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:433:22: note: expected ‘char *’ but argument is of type ‘const char *’ 433 | int convertroi(char *roi, int fastdim, int slowdim, | ~~~~~~^~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1727:27: warning: passing argument 1 of ‘cbf_free_text’ from incompatible pointer type [-Wincompatible-pointer-types] 1727 | cbf_free_text(&log,NULL); | ^~~~ | | | char ** In file included from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:262, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:179: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf_alloc.h:274:33: note: expected ‘const char **’ but argument is of type ‘char **’ 274 | int cbf_free_text (const char **old_block, size_t *old_nelem); | ~~~~~~~~~~~~~^~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1868:30: warning: variable ‘valmax’ set but not used [-Wunused-but-set-variable] 1868 | double valnew,valmin,valmax; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1868:16: warning: variable ‘valnew’ set but not used [-Wunused-but-set-variable] 1868 | double valnew,valmin,valmax; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:530:27: warning: unused variable ‘kjcm’ [-Wunused-variable] 530 | int ki, kj, kicm, kjcm; | ^~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:530:21: warning: unused variable ‘kicm’ [-Wunused-variable] 530 | int ki, kj, kicm, kjcm; | ^~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:522:35: warning: variable ‘smv_bin_type’ set but not used [-Wunused-but-set-variable] 522 | int smv_bin, smv_adc, smv_bin_type; | ^~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘adscimg2cbf_sub’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:2075:34: warning: passing argument 4 of ‘adscimg2cbf_sub2’ makes integer from pointer without a cast [-Wint-conversion] 2075 | NULL,NULL,NULL,NULL, | ^~~~ | | | void * /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:481:29: note: expected ‘size_t’ {aka ‘long unsigned int’} but argument is of type ‘void *’ 481 | size_t old_int_data_size, | ~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:179: In function ‘strncpy’, inlined from ‘gethd.constprop’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:263:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘gethd.constprop’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:260:7: note: length computed here 260 | l = strlen (field); | ^~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘adscimg2cbf_sub2’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:588:29: warning: ‘; ’ directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 588 | sprintf(temp, "%s=%s;\n", s, s1); | ^~~ In file included from /usr/include/stdio.h:866, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 4 or more bytes (assuming 1027) into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1846:53: warning: ‘smooth_data_as_int’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1846 | if (ki > 0 && smooth_data_as_int[(ki-1)*(1+fasthigh-fastlow+fastpadlow+fastpadhigh)/(bin+1)+kj] > 0) { | ^ mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/arvai_test.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/arvai_test mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cbf2adscimg In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:1: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:3: In function ‘strncpy’, inlined from ‘gethd’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:21:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c: In function ‘gethd’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:18:7: note: length computed here 18 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:126: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c: In function ‘padhd’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:217:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:217:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c: In function ‘cbfhandle2img_sub’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:75: warning: variable ‘dirinc’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:64: warning: variable ‘dirend’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:53: warning: variable ‘dirsta’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:46: warning: variable ‘second’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:39: warning: variable ‘first’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:31: warning: variable ‘colrow’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf2nexus.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cbf2nexus mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cif2c.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cif2c bash: line 1: g: command not found make[2]: [Makefile:1771: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cif2c] Error 127 (ignored) rm -f /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/solib/libcbf.so rm -f *.o mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/solib gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX -fPIC -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial -c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_airy_disk.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_alloc.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_ascii.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_binary.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_byte_offset.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_canonical.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_codes.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_compress.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_copy.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_file.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_getopt.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5_filter.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_lex.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_packed.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_predictor.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_read_binary.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_read_mime.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_simple.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_string.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_stx.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_tree.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_uncompressed.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_write.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_write_binary.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_ws.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbff.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/md5c.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/fgetln.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c: In function ‘cbf_select_saveframe’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:2498:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2498 | if (!handle) | ^~ In file included from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:256: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf.h:895:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 895 | #define cbf_failnez(f) { int err; err = (f); if (err) return err; } | ^ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:2505:5: note: in expansion of macro ‘cbf_failnez’ 2505 | cbf_failnez (cbf_find_parent (&node, handle->node, CBF_DATABLOCK)) | ^~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:266: In function ‘strncpy’, inlined from ‘cbf_validate’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:7605:6: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘cbf_validate’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf.c:7686:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c:937:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c:922:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfcat_op’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20819:38: warning: implicit declaration of function ‘cbf_read_h5file_group’; did you mean ‘cbf_read_h5file’? [-Wimplicit-function-declaration] 20819 | error |= cbf_read_h5file_group(cbf,nx,nx->flags,(hid_t)object); | ^~~~~~~~~~~~~~~~~~~~~ | cbf_read_h5file /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20811:48: warning: unused variable ‘indent’ [-Wunused-variable] 20811 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20784:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20784 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfdb_op’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20933:48: warning: unused variable ‘indent’ [-Wunused-variable] 20933 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20906:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20906 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__entry_op’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21797:48: warning: unused variable ‘indent’ [-Wunused-variable] 21797 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21716:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 21716 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22516:36: warning: variable ‘node’ set but not used [-Wunused-but-set-variable] 22516 | cbf_node * node = NULL; | ^~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22110:30: warning: variable ‘data_row’ set but not used [-Wunused-but-set-variable] 22110 | unsigned int data_row = ~0x0; | ^~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22836:32: warning: variable ‘diffrn_scan_axis’ set but not used [-Wunused-but-set-variable] 22836 | cbf_node * diffrn_scan_axis = NULL; | ^~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__array_structure_list_axis’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26493:50: warning: unused variable ‘rotation_axis_path’ [-Wunused-variable] 26493 | const char * rotation_axis_path = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__cbf_general_axes’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26704:26: warning: unused variable ‘equipment_component’ [-Wunused-variable] 26704 | const char * equipment_component = NULL; | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__axis’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:27034:28: warning: variable ‘axis_rotation_axis’ set but not used [-Wunused-but-set-variable] 27034 | cbf_node * axis_rotation_axis = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_h5ds_store_as_column’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:40: warning: unused variable ‘close’ [-Wunused-variable] 29166 | char open, close; | ^~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:34: warning: unused variable ‘open’ [-Wunused-variable] 29166 | char open, close; | ^~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28931:21: warning: variable ‘type_order’ set but not used [-Wunused-but-set-variable] 28931 | H5T_order_t type_order; | ^~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28925:16: warning: unused variable ‘byte_order’ [-Wunused-variable] 28925 | char * byte_order; | ^~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28903:14: warning: unused variable ‘buffer’ [-Wunused-variable] 28903 | char buffer[25]; | ^~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_object_visit’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:42: warning: variable ‘checked_digest’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:36: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30708:32: warning: variable ‘atcbf’ set but not used [-Wunused-but-set-variable] 30708 | int save_incbf, incbf, atcbf; /* within or at NXpdb or CBF_cif, etc. */ | ^~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30707:36: warning: unused variable ‘atnexus’ [-Wunused-variable] 30707 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_read_h5file_group’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31937:13: warning: unused variable ‘errorcode’ [-Wunused-variable] 31937 | int errorcode = 0; | ^~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31933:19: warning: unused variable ‘node’ [-Wunused-variable] 31933 | cbf_node *node; | ^~~~ At top level: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20853:16: warning: ‘cbf_write_nx2cbf__cbfdb_op’ defined but not used [-Wunused-function] 20853 | static int cbf_write_nx2cbf__cbfdb_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20641:16: warning: ‘cbf_write_nx2cbf__cbfcat_op’ defined but not used [-Wunused-function] 20641 | static int cbf_write_nx2cbf__cbfcat_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:9133:16: warning: ‘cbf_require_nxdetectors’ defined but not used [-Wunused-function] 9133 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_get_nxdata_field_name2.isra’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:37: warning: ‘%06d’ directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] 6345 | sprintf(buffer,"%06d",block); | ^~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:36: note: directive argument in the range [1, 2147483647] 6345 | sprintf(buffer,"%06d",block); | ^~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:258: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 11 bytes into a destination of size 7 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17932:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17934:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18014:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18016:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:122:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 122 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string.part.0’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function ‘cbf_append_string.part.0’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9, inlined from ‘cbf_append_string’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:293:16, inlined from ‘cbf_set_minicbf_header’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:429:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c: In function ‘cbf_compress_nibble_offset’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:936:21: warning: ‘dmode’ may be used uninitialized [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:579:13: note: ‘dmode’ declared here 579 | int dmode[CBF_NIBBLE_RUN],maxmode,minmode,newmode,nextmaxmode,tempmode; | ^~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_stx.c: In function ‘cbf_lex_wrapper’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_stx.c:370:13: warning: variable ‘cbffile’ set but not used [-Wunused-but-set-variable] 370 | cbf_file *cbffile; | ^~~~~~~ At top level: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/cbf_stx.c:827:26: warning: ‘yytname’ defined but not used [-Wunused-const-variable=] 827 | static const char *const yytname[] = | ^~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_read_mar345header’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of ‘char[65]’ [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing ‘C64’ 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ gcc -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/solib/libcbf.so *.o -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname -Wl,libcbf.so.1 -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 rm -f *.o mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cif2cbf.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cif2cbf In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:465: In function ‘strncpy’, inlined from ‘main’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2015:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cif2cbf.c: In function ‘main’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/fgetln.c -lm -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cbf_standardize_numbers In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c: In function ‘main’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:60:24: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 60 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:60:20: note: directive argument in the range [0, 2147483647] 60 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 6 and 15 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/fgetln.c:30: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/convert_image.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/convert_image /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/convert_image.c: In function ‘main’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/convert_image.c:533:7: warning: variable ‘transpose’ set but not used [-Wunused-but-set-variable] 533 | int transpose; | ^~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_read_mar345header’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of ‘char[65]’ [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing ‘C64’ 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:12: In function ‘memcpy’, inlined from ‘img_set_tags’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1784:7, inlined from ‘img_set_tags’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1761:5, inlined from ‘img_free_handle’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1844:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:10: warning: ‘__builtin___memcpy_chk’ writing between 18446744039349813248 and 18446744073709551600 bytes into a region of size 0 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_free_handle’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src/img.c:1773:28: note: destination object of size 0 allocated by ‘malloc’ 1773 | img->tag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: /tmp/ccCQ8cgV.o: in function `main': ././examples/convert_image.c:672: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/convert_minicbf.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/convert_minicbf chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/batch_convert_minicbf.sh mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/img2cif.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/img2cif gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/makecbf.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/makecbf gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/minicbf2nexus.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/minicbf2nexus mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/nexus2cbf.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/nexus2cbf mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/roi_peaksearch.c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/dps_peaksearch.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/roi_peaksearch mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/sequence_match.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/sequence_match mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/testcell.C -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testcell bash: line 1: g: command not found make[2]: [Makefile:1762: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testcell] Error 127 (ignored) mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/testalloc.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testalloc.tmp mv /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testalloc.tmp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testalloc mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/testreals.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testreals mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/testflat.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testflat mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/testflatpacked.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testflatpacked mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/testhdf5.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testhdf5.tmp mv /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testhdf5.tmp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testhdf5 mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/test_cbf_airy_disk.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk.tmp mv /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk.tmp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cbf_testxfelread.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread.tmp mv /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread.tmp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread make[2]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' # build the python extension. /usr/bin/make 'C++:=$(CXX)' /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' make[2]: '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/pycbf/setup.py' is up to date. make[2]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' dh_auto_build --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:237: /usr/bin/python3.10 setup.py build /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/pycbf/setup.py:7: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running build running build_py copying pycbf.py -> /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.10_pycbf/build running build_ext building '_pycbf' extension creating build creating build/src creating build/temp.linux-x86_64-3.10 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.10 -c ../src/cbf_simple.c -o build/temp.linux-x86_64-3.10/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: ../src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.10 -c pycbf_wrap.c -o build/temp.linux-x86_64-3.10/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function ‘cbf_handle_struct_set_image’: pycbf_wrap.c:4074:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims’: pycbf_wrap.c:4289:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_fs’: pycbf_wrap.c:4383:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_sf’: pycbf_wrap.c:4418:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_fs’: pycbf_wrap.c:4460:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image’: pycbf_wrap.c:4611:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_sf’: pycbf_wrap.c:4634:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image’: pycbf_wrap.c:4782:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims’: pycbf_wrap.c:4832:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_fs’: pycbf_wrap.c:4908:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_sf’: pycbf_wrap.c:5004:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_sf’: pycbf_wrap.c:5060:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image’: pycbf_wrap.c:5091:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_sf’: pycbf_wrap.c:5147:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray’: pycbf_wrap.c:5223:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray’: pycbf_wrap.c:5295:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_fs’: pycbf_wrap.c:5380:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_fs’: pycbf_wrap.c:5422:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_fs’: pycbf_wrap.c:5447:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_sf’: pycbf_wrap.c:5468:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: ‘convert_iarray’ defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: ‘convert_larray’ defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘get_error_message’: pycbf_wrap.c:3510:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: ‘%s’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 20 and 1043 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.10/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.10/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘SWIG_Python_FixMethods’ at pycbf_wrap.c:29493:15, inlined from ‘PyInit__pycbf’ at pycbf_wrap.c:29593:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/../src/cbf_simple.o build/temp.linux-x86_64-3.10/pycbf_wrap.o -L../solib/ -L../lib/ -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib -lcbf -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.10_pycbf/build/_pycbf.cpython-310-x86_64-linux-gnu.so I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py copying pycbf.py -> /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build running build_ext building '_pycbf' extension creating build/temp.linux-x86_64-3.9 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.9 -c ../src/cbf_simple.c -o build/temp.linux-x86_64-3.9/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: ../src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.9 -c pycbf_wrap.c -o build/temp.linux-x86_64-3.9/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function ‘cbf_handle_struct_set_image’: pycbf_wrap.c:4074:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims’: pycbf_wrap.c:4289:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_fs’: pycbf_wrap.c:4383:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_sf’: pycbf_wrap.c:4418:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_fs’: pycbf_wrap.c:4460:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image’: pycbf_wrap.c:4611:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_sf’: pycbf_wrap.c:4634:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image’: pycbf_wrap.c:4782:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims’: pycbf_wrap.c:4832:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_fs’: pycbf_wrap.c:4908:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_sf’: pycbf_wrap.c:5004:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_sf’: pycbf_wrap.c:5060:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image’: pycbf_wrap.c:5091:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_sf’: pycbf_wrap.c:5147:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray’: pycbf_wrap.c:5223:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray’: pycbf_wrap.c:5295:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_fs’: pycbf_wrap.c:5380:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_fs’: pycbf_wrap.c:5422:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_fs’: pycbf_wrap.c:5447:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_sf’: pycbf_wrap.c:5468:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: ‘convert_iarray’ defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: ‘convert_larray’ defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘get_error_message’: pycbf_wrap.c:3510:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: ‘%s’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 20 and 1043 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘SWIG_Python_FixMethods’ at pycbf_wrap.c:29493:15, inlined from ‘PyInit__pycbf’ at pycbf_wrap.c:29593:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/../src/cbf_simple.o build/temp.linux-x86_64-3.9/pycbf_wrap.o -L../solib/ -L../lib/ -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib -lcbf -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/_pycbf.cpython-39-x86_64-linux-gnu.so make[1]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--no-parallel dh_prep -a -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' # install the C/C++ library dh_auto_install make -j1 install DESTDIR=/build/cbflib-byGSW9/cbflib-0.9.6\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin g++ -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cif2c.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cif2c mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cif2cbf.c -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cif2cbf In file included from /usr/include/string.h:519, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:465: In function ‘strncpy’, inlined from ‘main’ at /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2015:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:91:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation] 91 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cif2cbf.c: In function ‘main’: /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin g++ -g -O2 -ffile-prefix-map=/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include -I/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/testcell.C -L/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testcell mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/include mkdir -p /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib # # libcbf # chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a chmod: cannot access '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1101: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf_old.a cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1102: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/lib/libcbf.a /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a #-chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so #-cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf_old.so cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/solib/libcbf.so /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 ln -s -r -f /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1 ln -s -r -f /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so #ln -s -f /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/lib_cbf.so chmod 644 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so # # includes # chmod -R 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib chmod -R 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib rm -rf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib_old cp -r /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib_old rm -rf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib cp -r /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/include /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib chmod 644 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib/*.h # # libfcb # # # libimg # # # programs # cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf': No such file or directory make[2]: [Makefile:1131: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/adscimg2cbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg': No such file or directory make[2]: [Makefile:1133: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cbf2adscimg /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers \ /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers': No such file or directory make[2]: [Makefile:1135: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cbf_standardize_numbers /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image': No such file or directory make[2]: [Makefile:1137: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/convert_image /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf': No such file or directory make[2]: [Makefile:1139: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/convert_minicbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf': No such file or directory make[2]: [Makefile:1141: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/makecbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif': No such file or directory make[2]: [Makefile:1143: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/img2cif /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf': No such file or directory make[2]: [Makefile:1145: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cif2cbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus': No such file or directory make[2]: [Makefile:1147: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/minicbf2nexus /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus': No such file or directory make[2]: [Makefile:1149: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cbf2nexus /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf': No such file or directory make[2]: [Makefile:1151: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/nexus2cbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch': No such file or directory make[2]: [Makefile:1153: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/roi_peaksearch /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match': No such file or directory make[2]: [Makefile:1155: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/sequence_match /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc': No such file or directory make[2]: [Makefile:1157: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testalloc /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test': No such file or directory make[2]: [Makefile:1159: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/arvai_test /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c': No such file or directory make[2]: [Makefile:1161: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/cif2c /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals': No such file or directory make[2]: [Makefile:1163: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testreals /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat': No such file or directory make[2]: [Makefile:1165: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testflat /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked': No such file or directory make[2]: [Makefile:1167: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testflatpacked /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked #-cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf_old #cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/tiff2cbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk': No such file or directory make[2]: [Makefile:1171: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5_old cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5': No such file or directory make[2]: [Makefile:1175: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/bin/testhdf5 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf_old.sh cp: cannot stat '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh': No such file or directory make[2]: [Makefile:1177: baseinstall] Error 1 (ignored) cp /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/examples/batch_convert_minicbf.sh /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk chmod 755 /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh make[2]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' # install the python extension /usr/bin/make 'C++:=$(CXX)' /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' make[2]: '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/pycbf/setup.py' is up to date. make[2]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' dh_auto_install --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:237: /usr/bin/python3.10 setup.py install --root /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/pycbf/setup.py:7: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running install running build running build_py running build_ext running install_lib creating /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf creating /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr creating /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib creating /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.10 creating /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.10/dist-packages copying /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.10_pycbf/build/pycbf.py -> /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.10/dist-packages copying /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.10_pycbf/build/_pycbf.cpython-310-x86_64-linux-gnu.so -> /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.10/dist-packages byte-compiling /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.10/dist-packages/pycbf.py to pycbf.cpython-310.pyc running install_egg_info Writing /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.10/dist-packages/_pycbf-0.0.0.egg-info I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf running install running build running build_py running build_ext running install_lib creating /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9 creating /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages copying /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/pycbf.py -> /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages copying /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/_pycbf.cpython-39-x86_64-linux-gnu.so -> /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages byte-compiling /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages/pycbf.py to pycbf.cpython-39.pyc running install_egg_info Writing /build/cbflib-byGSW9/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages/_pycbf-0.0.0.egg-info make[1]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' debian/rules override_dh_install make[1]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' # cbflib-bin dh_install -p cbflib-bin usr/bin/cbf2nexus dh_install -p cbflib-bin usr/bin/cif2cbf dh_install -p cbflib-bin usr/bin/convert_image dh_install -p cbflib-bin usr/bin/img2cif dh_install -p cbflib-bin usr/bin/makecbf # libcbf-dev dh_install -p libcbf-dev usr/include/cbflib/* dh_install -p libcbf-dev usr/lib/*/lib*.a dh_install -p libcbf-dev usr/lib/*/lib*.so # libcbf1 dh_install -p libcbf1 usr/lib/*/libcbf.so.* # Exclude duplicates (lintian check duplicate-files) dh_install -Xcif_img_1.3.2_22Jun05.html -Xcif_img_1.3.1.html make[1]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' debian/rules override_dh_installdocs make[1]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' # cbflib-doc dh_install -p cbflib-doc doc/*.html usr/share/doc/cbflib-doc/html dh_install: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). dh_installdocs -p cbflib-doc html_graphics dh_installdocs: warning: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions). # libcbf-dev dh_installdocs -p libcbf-dev README dh_installdocs make[1]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' dh_installchangelogs -a -O--no-parallel debian/rules override_dh_installman make[1]: Entering directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' dh_installman -p cbflib-bin debian/manpages/* make[1]: Leaving directory '/build/cbflib-byGSW9/cbflib-0.9.6+dfsg1' dh_python3 -a -O--no-parallel dh_installinit -a -O--no-parallel dh_installsystemduser -a -O--no-parallel dh_perl -a -O--no-parallel dh_link -a -O--no-parallel dh_strip_nondeterminism -a -O--no-parallel dh_compress -a -O--no-parallel dh_fixperms -a -O--no-parallel dh_missing -a -O--no-parallel dh_missing: warning: usr/bin/adscimg2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/arvai_test exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/batch_convert_minicbf.sh exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf2adscimg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf_standardize_numbers exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cif2c exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/convert_minicbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/minicbf2nexus exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/nexus2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/roi_peaksearch exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/sequence_match exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/test_cbf_airy_disk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/test_cbf_airy_disk_old exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testalloc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testflat exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testflatpacked exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testhdf5 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testreals exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: cbflib-bin (5), cbflib-doc (0), libcbf-dev (37), libcbf1 (2), python3-pycbf (0) * dh_installdocs: cbflib-bin (0), cbflib-doc (0), libcbf-dev (1), libcbf1 (0), python3-pycbf (0) * dh_installman: cbflib-bin (4), cbflib-doc (0), libcbf-dev (0), libcbf1 (0), python3-pycbf (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pycbf/usr/lib/python3/dist-packages/_pycbf.cpython-310-x86_64-linux-gnu.so debian/python3-pycbf/usr/lib/python3/dist-packages/_pycbf.cpython-39-x86_64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -a -O--no-parallel dh_gencontrol -a -O--no-parallel dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--no-parallel dh_builddeb -a -O--no-parallel dpkg-deb: building package 'libcbf-dev' in '../libcbf-dev_0.9.6+dfsg1-3+b1_amd64.deb'. dpkg-deb: building package 'libcbf1' in '../libcbf1_0.9.6+dfsg1-3+b1_amd64.deb'. dpkg-deb: building package 'libcbf1-dbgsym' in '../libcbf1-dbgsym_0.9.6+dfsg1-3+b1_amd64.deb'. dpkg-deb: building package 'cbflib-bin' in '../cbflib-bin_0.9.6+dfsg1-3+b1_amd64.deb'. dpkg-deb: building package 'cbflib-bin-dbgsym' in '../cbflib-bin-dbgsym_0.9.6+dfsg1-3+b1_amd64.deb'. dpkg-deb: building package 'python3-pycbf' in '../python3-pycbf_0.9.6+dfsg1-3+b1_amd64.deb'. dpkg-deb: building package 'python3-pycbf-dbgsym' in '../python3-pycbf-dbgsym_0.9.6+dfsg1-3+b1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../cbflib_0.9.6+dfsg1-3+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/cbflib-byGSW9 /tmp/cbflib-0.9.6+dfsg1-3+b1wlbtgz0f I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.eWOZe4fnj5... I: success in 3306.4328 seconds md5: cbflib-bin-dbgsym_0.9.6+dfsg1-3+b1_amd64.deb: OK md5: cbflib-bin_0.9.6+dfsg1-3+b1_amd64.deb: OK md5: libcbf-dev_0.9.6+dfsg1-3+b1_amd64.deb: OK md5: libcbf1-dbgsym_0.9.6+dfsg1-3+b1_amd64.deb: OK md5: libcbf1_0.9.6+dfsg1-3+b1_amd64.deb: OK md5: python3-pycbf-dbgsym_0.9.6+dfsg1-3+b1_amd64.deb: OK md5: python3-pycbf_0.9.6+dfsg1-3+b1_amd64.deb: OK sha1: cbflib-bin-dbgsym_0.9.6+dfsg1-3+b1_amd64.deb: OK sha1: cbflib-bin_0.9.6+dfsg1-3+b1_amd64.deb: OK sha1: libcbf-dev_0.9.6+dfsg1-3+b1_amd64.deb: OK sha1: libcbf1-dbgsym_0.9.6+dfsg1-3+b1_amd64.deb: OK sha1: libcbf1_0.9.6+dfsg1-3+b1_amd64.deb: OK sha1: python3-pycbf-dbgsym_0.9.6+dfsg1-3+b1_amd64.deb: OK sha1: python3-pycbf_0.9.6+dfsg1-3+b1_amd64.deb: OK sha256: cbflib-bin-dbgsym_0.9.6+dfsg1-3+b1_amd64.deb: OK sha256: cbflib-bin_0.9.6+dfsg1-3+b1_amd64.deb: OK sha256: libcbf-dev_0.9.6+dfsg1-3+b1_amd64.deb: OK sha256: libcbf1-dbgsym_0.9.6+dfsg1-3+b1_amd64.deb: OK sha256: libcbf1_0.9.6+dfsg1-3+b1_amd64.deb: OK sha256: python3-pycbf-dbgsym_0.9.6+dfsg1-3+b1_amd64.deb: OK sha256: python3-pycbf_0.9.6+dfsg1-3+b1_amd64.deb: OK Checksums: OK