Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/bitshuffle/bitshuffle_0.3.5-4_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/bitshuffle-0.3.5-4844neyru/bitshuffle_0.3.5-4_amd64.buildinfo Get source package info: bitshuffle=0.3.5-4 Source URL: http://snapshot.notset.fr/mr/package/bitshuffle/0.3.5-4/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.90.20220130-2 binutils-common=2.37.90.20220130-2 binutils-x86-64-linux-gnu=2.37.90.20220130-2 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 cmake=3.22.1-1+b1 cmake-data=3.22.1-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-16 cython3=0.29.24-2 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-exec=0.23.4 dh-python=5.20220119 dh-strip-nondeterminism=1.13.0-1 diffstat=1.64-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 ed=1.17-1 emacsen-common=3.0.4 file=1:5.41-2 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-16 gcc=4:11.2.0-2 gcc-11=11.2.0-16 gcc-11-base=11.2.0-16 gettext=0.21-4 gettext-base=0.21-4 gfortran-11=11.2.0-16 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hostname=3.23 ibverbs-providers=39.0-1 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libarchive-zip-perl=1.68-1 libarchive13=3.5.2-1 libasan6=11.2.0-16 libatomic1=11.2.0-16 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37.90.20220130-2 libblas3=3.10.0-2 libblkid1=2.37.3-1+b1 libbrotli1=1.0.9-2+b3 libbsd0=0.11.5-1+b1 libbz2-1.0=1.0.8-5 libc-bin=2.33-5 libc-dev-bin=2.33-5 libc6=2.33-5 libc6-dev=2.33-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcbor0.8=0.8.0-2 libcc1-0=11.2.0-16 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.37.90.20220130-2 libctf0=2.37.90.20220130-2 libcurl3-gnutls=7.81.0-1 libcurl4=7.81.0-1 libcurl4-openssl-dev=7.81.0-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdpkg-perl=1.21.1 libedit2=3.1-20210910-1 libelf1=0.186-1 libevent-2.1-7=2.1.12-stable-1 libevent-core-2.1-7=2.1.12-stable-1 libevent-dev=2.1.12-stable-1 libevent-extra-2.1-7=2.1.12-stable-1 libevent-openssl-2.1-7=2.1.12-stable-1 libevent-pthreads-2.1-7=2.1.12-stable-1 libexpat1=2.4.4-1 libexpat1-dev=2.4.4-1 libfabric1=1.11.0-3 libffi8=3.4.2-4 libfido2-1=1.10.0-1 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.2.0-16 libgcc-s1=11.2.0-16 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran-11-dev=11.2.0-16 libgfortran5=11.2.0-16 libglib2.0-0=2.70.3-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.3-4+b1 libgomp1=11.2.0-16 libgpg-error0=1.43-3 libgssapi-krb5-2=1.18.3-7 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhdf5-openmpi-103-1=1.10.7+repack-4 libhdf5-openmpi-cpp-103-1=1.10.7+repack-4 libhdf5-openmpi-dev=1.10.7+repack-4 libhdf5-openmpi-fortran-102=1.10.7+repack-4 libhdf5-openmpi-hl-100=1.10.7+repack-4 libhdf5-openmpi-hl-cpp-100=1.10.7+repack-4 libhdf5-openmpi-hl-fortran-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libhwloc-dev=2.7.0-2 libhwloc-plugins=2.7.0-2 libhwloc15=2.7.0-2 libibverbs-dev=39.0-1 libibverbs1=39.0-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-16 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjs-jquery-ui=1.13.0+dfsg-1 libjs-sphinxdoc=4.3.2-1 libjs-underscore=1.13.2~dfsg-2 libjsoncpp25=1.9.5-3 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-2 libldap-2.4-2=2.4.59+dfsg-1+b1 liblsan0=11.2.0-16 libltdl-dev=2.4.6-15 libltdl7=2.4.6-15 liblz4-1=1.9.3-2 liblz4-dev=1.9.3-2 liblzf-dev=3.6-3 liblzf1=3.6-3 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libmount1=2.37.3-1+b1 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.3-2 libncursesw6=6.3-2 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnl-3-200=3.4.0-1+b1 libnl-3-dev=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnl-route-3-dev=3.4.0-1+b1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma-dev=2.0.14-3 libnuma1=2.0.14-3 libopenmpi-dev=4.1.2-1 libopenmpi3=4.1.2-1 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpciaccess0=0.16-3 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.34=5.34.0-3 libpipeline1=1.5.5-1 libpmix-dev=4.1.1~rc6-1 libpmix2=4.1.1~rc6-1 libprocps8=2:3.3.17-6 libpsl5=0.21.0-1.2 libpsm-infinipath1=3.3+20.604758e7-6.1 libpsm2-2=11.2.185-1 libpython3-all-dev=3.9.8-1 libpython3-dev=3.9.8-1 libpython3-stdlib=3.9.8-1 libpython3.10=3.10.2-1 libpython3.10-dev=3.10.2-1 libpython3.10-minimal=3.10.2-1 libpython3.10-stdlib=3.10.2-1 libpython3.9=3.9.10-1 libpython3.9-dev=3.9.10-1 libpython3.9-minimal=3.9.10-1 libpython3.9-stdlib=3.9.10-1 libquadmath0=11.2.0-16 librdmacm1=39.0-1 libreadline8=8.1.2-1 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-3 libsasl2-modules-db=2.1.27+dfsg2-3 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsemanage-common=3.3-1 libsemanage2=3.3-1+b1 libsepol2=3.3-1 libsigsegv2=2.14-1 libsmartcols1=2.37.3-1+b1 libsqlite3-0=3.37.2-2 libssh2-1=1.10.0-2 libssl-dev=1.1.1m-1 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-16 libstdc++6=11.2.0-16 libsub-override-perl=0.09-2 libsystemd0=250.3-2 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-16 libubsan1=11.2.0-16 libuchardet0=0.0.7-1 libucx0=1.12.0-1 libudev1=250.3-2 libunistring2=0.9.10-6 libuuid1=2.37.3-1+b1 libuv1=1.43.0-1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxml2=2.9.12+dfsg-5+b1 libxnvctrl0=470.94-1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.16.7-1 login=1:4.11.1+dfsg1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.0-2 mawk=1.3.4.20200120-3+b1 media-types=5.0.0 mpi-default-bin=1.14 ncurses-base=6.3-2 ncurses-bin=6.3-2 ocl-icd-libopencl1=2.2.14-3 openmpi-bin=4.1.2-1 openmpi-common=4.1.2-1 openssh-client=1:8.7p1-4 passwd=1:4.11.1+dfsg1-1 patch=2.7.6-7 perl=5.34.0-3 perl-base=5.34.0-3 perl-modules-5.34=5.34.0-3 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 procps=2:3.3.17-6 python3=3.9.8-1 python3-all=3.9.8-1 python3-all-dev=3.9.8-1 python3-dev=3.9.8-1 python3-distutils=3.9.10-1 python3-h5py-mpi=3.6.0-2 python3-h5py-serial=3.6.0-2 python3-lib2to3=3.9.10-1 python3-minimal=3.9.8-1 python3-mpi4py=3.1.3-1 python3-numpy=1:1.21.5-1 python3-pkg-resources=59.6.0-1.2 python3-setuptools=59.6.0-1.2 python3.10=3.10.2-1 python3.10-dev=3.10.2-1 python3.10-minimal=3.10.2-1 python3.9=3.9.10-1 python3.9-dev=3.9.10-1 python3.9-minimal=3.9.10-1 quilt=0.66-2.1 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 tzdata=2021e-1 util-linux=2.37.3-1+b1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220213T030339Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220213T030339Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220206T214258Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d bitshuffle=0.3.5-4 && mkdir -p /build/bitshuffle-Gcb5tN && dpkg-source --no-check -x /*.dsc /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5 && chown -R builduser:builduser /build/bitshuffle-Gcb5tN" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1644267818" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/bitshuffle-Gcb5tN /tmp/bitshuffle-0.3.5-4844neyru bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220206T214258Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.P4xXGXerPg as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.P4xXGXerPg Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220206T214258Z unstable/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220206T214258Z unstable/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (1057 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4697 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220213T030339Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220213T030339Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220206T214258Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.P4xXGXerPg Get:1 http://snapshot.notset.fr/archive/debian/20220213T030339Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220206T214258Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20220213T030339Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220213T030339Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220213T030339Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220213T030339Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220213T030339Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220213T030339Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20220213T030339Z bookworm/main Sources [11.8 MB] Get:4 http://snapshot.notset.fr/archive/debian/20220213T030339Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.2 MB in 20s (1187 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.P4xXGXerPg I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d bitshuffle=0.3.5-4 && mkdir -p /build/bitshuffle-Gcb5tN && dpkg-source --no-check -x /*.dsc /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5 && chown -R builduser:builduser /build/bitshuffle-Gcb5tN"' exec /tmp/mmdebstrap.P4xXGXerPg Reading package lists... NOTICE: 'bitshuffle' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/alteholz/bitshuffle.git Please use: git clone https://salsa.debian.org/alteholz/bitshuffle.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 122 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220213T030339Z bookworm/main bitshuffle 0.3.5-4 (dsc) [2214 B] Get:2 http://snapshot.notset.fr/archive/debian/20220213T030339Z bookworm/main bitshuffle 0.3.5-4 (tar) [112 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220213T030339Z bookworm/main bitshuffle 0.3.5-4 (diff) [7080 B] Fetched 122 kB in 0s (782 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'bitshuffle_0.3.5-4.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting bitshuffle in /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5 dpkg-source: info: unpacking bitshuffle_0.3.5.orig.tar.gz dpkg-source: info: unpacking bitshuffle_0.3.5-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hdf5-old-api.patch dpkg-source: info: applying change-build-flags.patch dpkg-source: info: applying fix-deprecated.patch dpkg-source: info: applying 0003-use-the-system-liblzf.patch dpkg-source: info: applying 0005-use-the-system-lz4.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1644267818" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.P4xXGXerPg dpkg-buildpackage: info: source package bitshuffle dpkg-buildpackage: info: source version 0.3.5-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Thorsten Alteholz dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5' rm -rf lzf/lzf rm -rf lz4 dh_auto_clean I: pybuild base:237: python3.10 setup.py clean running clean removing '/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it I: pybuild base:237: python3.9 setup.py clean running clean removing '/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it make[1]: Leaving directory '/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py config running config I: pybuild base:237: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5' CC=mpicc dh_auto_build I: pybuild base:237: /usr/bin/python3.10 setup.py build running build running build_py creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle copying bitshuffle/__init__.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests copying bitshuffle/tests/__init__.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests copying bitshuffle/tests/make_regression_tdata.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests copying bitshuffle/tests/test_ext.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests copying bitshuffle/tests/test_regression.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests copying bitshuffle/tests/test_h5filter.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests copying bitshuffle/tests/test_h5plugin.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests/data copying bitshuffle/tests/data/regression_0.1.3.h5 -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests/data running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/bitshuffle/ext.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/bitshuffle/h5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling bitshuffle/ext.pyx because it changed. Compiling bitshuffle/h5.pyx because it changed. [1/2] Cythonizing bitshuffle/ext.pyx [2/2] Cythonizing bitshuffle/h5.pyx ################################# # Compiling with OpenMP support # ################################# building 'bitshuffle.ext' extension creating build creating build/temp.linux-x86_64-3.10 creating build/temp.linux-x86_64-3.10/bitshuffle creating build/temp.linux-x86_64-3.10/src mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c bitshuffle/ext.c -o build/temp.linux-x86_64-3.10/bitshuffle/ext.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from bitshuffle/ext.c:666: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ bitshuffle/ext.c: In function ‘__pyx_pf_10bitshuffle_3ext_using_NEON’: bitshuffle/ext.c:2292:16: warning: implicit declaration of function ‘bshuf_using_NEON’; did you mean ‘bshuf_using_AVX2’? [-Wimplicit-function-declaration] 2292 | __pyx_t_1 = (bshuf_using_NEON() != 0); | ^~~~~~~~~~~~~~~~ | bshuf_using_AVX2 mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c src/bitshuffle.c -o build/temp.linux-x86_64-3.10/src/bitshuffle.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -fopenmp src/bitshuffle.c: In function ‘bshuf_compress_lz4_block’: src/bitshuffle.c:61:5: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:697:75: note: declared here 697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ src/bitshuffle.c: In function ‘bshuf_decompress_lz4_block’: src/bitshuffle.c:100:5: warning: ‘LZ4_decompress_fast’ is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations] 100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:754:16: note: declared here 754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize); | ^~~~~~~~~~~~~~~~~~~ mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c src/bitshuffle_core.c -o build/temp.linux-x86_64-3.10/src/bitshuffle_core.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c src/iochain.c -o build/temp.linux-x86_64-3.10/src/iochain.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/bitshuffle/ext.o build/temp.linux-x86_64-3.10/src/bitshuffle.o build/temp.linux-x86_64-3.10/src/bitshuffle_core.o build/temp.linux-x86_64-3.10/src/iochain.o -llz4 -o /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/ext.cpython-310-x86_64-linux-gnu.so -fopenmp building 'bitshuffle.h5' extension mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.10 -c bitshuffle/h5.c -o build/temp.linux-x86_64-3.10/bitshuffle/h5.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -pthread -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.10 -c src/bitshuffle.c -o build/temp.linux-x86_64-3.10/src/bitshuffle.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -pthread -fopenmp src/bitshuffle.c: In function ‘bshuf_compress_lz4_block’: src/bitshuffle.c:61:5: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:697:75: note: declared here 697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ src/bitshuffle.c: In function ‘bshuf_decompress_lz4_block’: src/bitshuffle.c:100:5: warning: ‘LZ4_decompress_fast’ is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations] 100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:754:16: note: declared here 754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize); | ^~~~~~~~~~~~~~~~~~~ mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.10 -c src/bitshuffle_core.c -o build/temp.linux-x86_64-3.10/src/bitshuffle_core.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -pthread -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.10 -c src/bshuf_h5filter.c -o build/temp.linux-x86_64-3.10/src/bshuf_h5filter.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -pthread -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.10 -c src/iochain.c -o build/temp.linux-x86_64-3.10/src/iochain.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -pthread -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/bitshuffle/h5.o build/temp.linux-x86_64-3.10/src/bitshuffle.o build/temp.linux-x86_64-3.10/src/bitshuffle_core.o build/temp.linux-x86_64-3.10/src/bshuf_h5filter.o build/temp.linux-x86_64-3.10/src/iochain.o -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi -llz4 -o /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/h5.cpython-310-x86_64-linux-gnu.so -fopenmp building 'bitshuffle.plugin.libh5bshuf' extension mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.10 -c src/bitshuffle.c -o build/temp.linux-x86_64-3.10/src/bitshuffle.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -pthread -fopenmp src/bitshuffle.c: In function ‘bshuf_compress_lz4_block’: src/bitshuffle.c:61:5: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:697:75: note: declared here 697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ src/bitshuffle.c: In function ‘bshuf_decompress_lz4_block’: src/bitshuffle.c:100:5: warning: ‘LZ4_decompress_fast’ is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations] 100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:754:16: note: declared here 754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize); | ^~~~~~~~~~~~~~~~~~~ mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.10 -c src/bitshuffle_core.c -o build/temp.linux-x86_64-3.10/src/bitshuffle_core.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -pthread -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.10 -c src/bshuf_h5filter.c -o build/temp.linux-x86_64-3.10/src/bshuf_h5filter.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -pthread -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.10 -c src/bshuf_h5plugin.c -o build/temp.linux-x86_64-3.10/src/bshuf_h5plugin.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -pthread -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.10 -c src/iochain.c -o build/temp.linux-x86_64-3.10/src/iochain.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -pthread -fopenmp creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/plugin x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/src/bitshuffle.o build/temp.linux-x86_64-3.10/src/bitshuffle_core.o build/temp.linux-x86_64-3.10/src/bshuf_h5filter.o build/temp.linux-x86_64-3.10/src/bshuf_h5plugin.o build/temp.linux-x86_64-3.10/src/iochain.o -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi -llz4 -o /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-310-x86_64-linux-gnu.so -fopenmp building 'bitshuffle.plugin.libh5LZF' extension creating build/temp.linux-x86_64-3.10/lzf mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/liblzf -I/usr/include/python3.10 -c lzf/lzf_filter.c -o build/temp.linux-x86_64-3.10/lzf/lzf_filter.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -pthread -fopenmp lzf/lzf_filter.c: In function ‘register_lzf’: lzf/lzf_filter.c:85:9: warning: initialization of ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 85 | "lzf", | ^~~~~ lzf/lzf_filter.c:85:9: note: (near initialization for ‘filter_class.id’) lzf/lzf_filter.c:86:9: warning: initialization of ‘unsigned int’ from ‘void *’ makes integer from pointer without a cast [-Wint-conversion] 86 | NULL, | ^~~~ lzf/lzf_filter.c:86:9: note: (near initialization for ‘filter_class.encoder_present’) lzf/lzf_filter.c:87:9: warning: initialization of ‘unsigned int’ from ‘herr_t (*)(hid_t, hid_t, hid_t)’ {aka ‘int (*)(long int, long int, long int)’} makes integer from pointer without a cast [-Wint-conversion] 87 | (H5Z_set_local_func_t)(lzf_set_local), | ^ lzf/lzf_filter.c:87:9: note: (near initialization for ‘filter_class.decoder_present’) lzf/lzf_filter.c:88:9: warning: initialization of ‘const char *’ from incompatible pointer type ‘size_t (*)(unsigned int, size_t, const unsigned int *, size_t, size_t *, void **)’ {aka ‘long unsigned int (*)(unsigned int, long unsigned int, const unsigned int *, long unsigned int, long unsigned int *, void **)’} [-Wincompatible-pointer-types] 88 | (H5Z_func_t)(lzf_filter) | ^ lzf/lzf_filter.c:88:9: note: (near initialization for ‘filter_class.name’) mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/liblzf -I/usr/include/python3.10 -c src/lzf_h5plugin.c -o build/temp.linux-x86_64-3.10/src/lzf_h5plugin.o -std=c99 -ffast-math -fno-strict-aliasing -O3 -fPIC -pthread -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/lzf/lzf_filter.o build/temp.linux-x86_64-3.10/src/lzf_h5plugin.o -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi -llzf -o /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-310-x86_64-linux-gnu.so -fopenmp I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle copying bitshuffle/__init__.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests copying bitshuffle/tests/__init__.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests copying bitshuffle/tests/make_regression_tdata.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests copying bitshuffle/tests/test_ext.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests copying bitshuffle/tests/test_regression.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests copying bitshuffle/tests/test_h5filter.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests copying bitshuffle/tests/test_h5plugin.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/data copying bitshuffle/tests/data/regression_0.1.3.h5 -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/data running build_ext ################################# # Compiling with OpenMP support # ################################# building 'bitshuffle.ext' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/bitshuffle creating build/temp.linux-x86_64-3.9/src mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c bitshuffle/ext.c -o build/temp.linux-x86_64-3.9/bitshuffle/ext.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from bitshuffle/ext.c:666: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ bitshuffle/ext.c: In function ‘__pyx_pf_10bitshuffle_3ext_using_NEON’: bitshuffle/ext.c:2292:16: warning: implicit declaration of function ‘bshuf_using_NEON’; did you mean ‘bshuf_using_AVX2’? [-Wimplicit-function-declaration] 2292 | __pyx_t_1 = (bshuf_using_NEON() != 0); | ^~~~~~~~~~~~~~~~ | bshuf_using_AVX2 mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/bitshuffle.c -o build/temp.linux-x86_64-3.9/src/bitshuffle.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -fopenmp src/bitshuffle.c: In function ‘bshuf_compress_lz4_block’: src/bitshuffle.c:61:5: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:697:75: note: declared here 697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ src/bitshuffle.c: In function ‘bshuf_decompress_lz4_block’: src/bitshuffle.c:100:5: warning: ‘LZ4_decompress_fast’ is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations] 100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:754:16: note: declared here 754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize); | ^~~~~~~~~~~~~~~~~~~ mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/bitshuffle_core.c -o build/temp.linux-x86_64-3.9/src/bitshuffle_core.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c src/iochain.c -o build/temp.linux-x86_64-3.9/src/iochain.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/bitshuffle/ext.o build/temp.linux-x86_64-3.9/src/bitshuffle.o build/temp.linux-x86_64-3.9/src/bitshuffle_core.o build/temp.linux-x86_64-3.9/src/iochain.o -llz4 -o /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/ext.cpython-39-x86_64-linux-gnu.so -fopenmp building 'bitshuffle.h5' extension mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.9 -c bitshuffle/h5.c -o build/temp.linux-x86_64-3.9/bitshuffle/h5.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -pthread -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bitshuffle.c -o build/temp.linux-x86_64-3.9/src/bitshuffle.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -pthread -fopenmp src/bitshuffle.c: In function ‘bshuf_compress_lz4_block’: src/bitshuffle.c:61:5: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:697:75: note: declared here 697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ src/bitshuffle.c: In function ‘bshuf_decompress_lz4_block’: src/bitshuffle.c:100:5: warning: ‘LZ4_decompress_fast’ is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations] 100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:754:16: note: declared here 754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize); | ^~~~~~~~~~~~~~~~~~~ mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bitshuffle_core.c -o build/temp.linux-x86_64-3.9/src/bitshuffle_core.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -pthread -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bshuf_h5filter.c -o build/temp.linux-x86_64-3.9/src/bshuf_h5filter.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -pthread -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.9 -c src/iochain.c -o build/temp.linux-x86_64-3.9/src/iochain.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -pthread -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/bitshuffle/h5.o build/temp.linux-x86_64-3.9/src/bitshuffle.o build/temp.linux-x86_64-3.9/src/bitshuffle_core.o build/temp.linux-x86_64-3.9/src/bshuf_h5filter.o build/temp.linux-x86_64-3.9/src/iochain.o -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi -llz4 -o /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/h5.cpython-39-x86_64-linux-gnu.so -fopenmp building 'bitshuffle.plugin.libh5bshuf' extension mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bitshuffle.c -o build/temp.linux-x86_64-3.9/src/bitshuffle.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -pthread -fopenmp src/bitshuffle.c: In function ‘bshuf_compress_lz4_block’: src/bitshuffle.c:61:5: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:697:75: note: declared here 697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ src/bitshuffle.c: In function ‘bshuf_decompress_lz4_block’: src/bitshuffle.c:100:5: warning: ‘LZ4_decompress_fast’ is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations] 100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:754:16: note: declared here 754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize); | ^~~~~~~~~~~~~~~~~~~ mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bitshuffle_core.c -o build/temp.linux-x86_64-3.9/src/bitshuffle_core.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -pthread -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bshuf_h5filter.c -o build/temp.linux-x86_64-3.9/src/bshuf_h5filter.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -pthread -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.9 -c src/bshuf_h5plugin.c -o build/temp.linux-x86_64-3.9/src/bshuf_h5plugin.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -pthread -fopenmp mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 -Isrc/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/python3.9 -c src/iochain.c -o build/temp.linux-x86_64-3.9/src/iochain.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -pthread -fopenmp creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/src/bitshuffle.o build/temp.linux-x86_64-3.9/src/bitshuffle_core.o build/temp.linux-x86_64-3.9/src/bshuf_h5filter.o build/temp.linux-x86_64-3.9/src/bshuf_h5plugin.o build/temp.linux-x86_64-3.9/src/iochain.o -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi -llz4 -o /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-39-x86_64-linux-gnu.so -fopenmp building 'bitshuffle.plugin.libh5LZF' extension creating build/temp.linux-x86_64-3.9/lzf mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/liblzf -I/usr/include/python3.9 -c lzf/lzf_filter.c -o build/temp.linux-x86_64-3.9/lzf/lzf_filter.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -pthread -fopenmp lzf/lzf_filter.c: In function ‘register_lzf’: lzf/lzf_filter.c:85:9: warning: initialization of ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 85 | "lzf", | ^~~~~ lzf/lzf_filter.c:85:9: note: (near initialization for ‘filter_class.id’) lzf/lzf_filter.c:86:9: warning: initialization of ‘unsigned int’ from ‘void *’ makes integer from pointer without a cast [-Wint-conversion] 86 | NULL, | ^~~~ lzf/lzf_filter.c:86:9: note: (near initialization for ‘filter_class.encoder_present’) lzf/lzf_filter.c:87:9: warning: initialization of ‘unsigned int’ from ‘herr_t (*)(hid_t, hid_t, hid_t)’ {aka ‘int (*)(long int, long int, long int)’} makes integer from pointer without a cast [-Wint-conversion] 87 | (H5Z_set_local_func_t)(lzf_set_local), | ^ lzf/lzf_filter.c:87:9: note: (near initialization for ‘filter_class.decoder_present’) lzf/lzf_filter.c:88:9: warning: initialization of ‘const char *’ from incompatible pointer type ‘size_t (*)(unsigned int, size_t, const unsigned int *, size_t, size_t *, void **)’ {aka ‘long unsigned int (*)(unsigned int, long unsigned int, const unsigned int *, long unsigned int, long unsigned int *, void **)’} [-Wincompatible-pointer-types] 88 | (H5Z_func_t)(lzf_filter) | ^ lzf/lzf_filter.c:88:9: note: (near initialization for ‘filter_class.name’) mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilzf/ -I/usr/include/hdf5/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/include/liblzf -I/usr/include/python3.9 -c src/lzf_h5plugin.c -o build/temp.linux-x86_64-3.9/src/lzf_h5plugin.o -std=c99 -ffast-math -O3 -fno-strict-aliasing -fPIC -pthread -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/lzf/lzf_filter.o build/temp.linux-x86_64-3.9/src/lzf_h5plugin.o -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi -llzf -o /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-39-x86_64-linux-gnu.so -fopenmp # build the hdf5 plugins for hdf5 flavours for flavour in serial openmpi; do\ builddir=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/build-$flavour;\ mkdir -p $builddir;\ cc -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -std=c99 -ffast-math -pthread -O3 -fPIC \ -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 \ -I/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/lzf src/lzf_h5plugin.c lzf/lzf_filter.c \ `pkg-config --cflags --libs hdf5-$flavour` \ `pkg-config --cflags --libs liblzf` \ -o $builddir/libh5LZF.so;\ cc -g -O2 -ffile-prefix-map=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -std=c99 -ffast-math -pthread -O3 -fPIC \ -DBSHUF_VERSION_MAJOR=0 -DBSHUF_VERSION_MINOR=3 -DBSHUF_VERSION_POINT=5 \ -I/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/src src/bshuf_h5plugin.c src/bshuf_h5filter.c src/bitshuffle.c src/bitshuffle_core.c src/iochain.c \ `pkg-config --cflags --libs hdf5-$flavour` \ `pkg-config --cflags --libs liblz4` \ -o $builddir/libh5bshuf.so;\ done lzf/lzf_filter.c: In function ‘register_lzf’: lzf/lzf_filter.c:85:9: warning: initialization of ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 85 | "lzf", | ^~~~~ lzf/lzf_filter.c:85:9: note: (near initialization for ‘filter_class.id’) lzf/lzf_filter.c:86:9: warning: initialization of ‘unsigned int’ from ‘void *’ makes integer from pointer without a cast [-Wint-conversion] 86 | NULL, | ^~~~ lzf/lzf_filter.c:86:9: note: (near initialization for ‘filter_class.encoder_present’) lzf/lzf_filter.c:87:9: warning: initialization of ‘unsigned int’ from ‘herr_t (*)(hid_t, hid_t, hid_t)’ {aka ‘int (*)(long int, long int, long int)’} makes integer from pointer without a cast [-Wint-conversion] 87 | (H5Z_set_local_func_t)(lzf_set_local), | ^ lzf/lzf_filter.c:87:9: note: (near initialization for ‘filter_class.decoder_present’) lzf/lzf_filter.c:88:9: warning: initialization of ‘const char *’ from incompatible pointer type ‘size_t (*)(unsigned int, size_t, const unsigned int *, size_t, size_t *, void **)’ {aka ‘long unsigned int (*)(unsigned int, long unsigned int, const unsigned int *, long unsigned int, long unsigned int *, void **)’} [-Wincompatible-pointer-types] 88 | (H5Z_func_t)(lzf_filter) | ^ lzf/lzf_filter.c:88:9: note: (near initialization for ‘filter_class.name’) src/bitshuffle.c: In function ‘bshuf_compress_lz4_block’: src/bitshuffle.c:61:5: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:697:75: note: declared here 697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ src/bitshuffle.c: In function ‘bshuf_decompress_lz4_block’: src/bitshuffle.c:100:5: warning: ‘LZ4_decompress_fast’ is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations] 100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:754:16: note: declared here 754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize); | ^~~~~~~~~~~~~~~~~~~ lzf/lzf_filter.c: In function ‘register_lzf’: lzf/lzf_filter.c:85:9: warning: initialization of ‘int’ from ‘char *’ makes integer from pointer without a cast [-Wint-conversion] 85 | "lzf", | ^~~~~ lzf/lzf_filter.c:85:9: note: (near initialization for ‘filter_class.id’) lzf/lzf_filter.c:86:9: warning: initialization of ‘unsigned int’ from ‘void *’ makes integer from pointer without a cast [-Wint-conversion] 86 | NULL, | ^~~~ lzf/lzf_filter.c:86:9: note: (near initialization for ‘filter_class.encoder_present’) lzf/lzf_filter.c:87:9: warning: initialization of ‘unsigned int’ from ‘herr_t (*)(hid_t, hid_t, hid_t)’ {aka ‘int (*)(long int, long int, long int)’} makes integer from pointer without a cast [-Wint-conversion] 87 | (H5Z_set_local_func_t)(lzf_set_local), | ^ lzf/lzf_filter.c:87:9: note: (near initialization for ‘filter_class.decoder_present’) lzf/lzf_filter.c:88:9: warning: initialization of ‘const char *’ from incompatible pointer type ‘size_t (*)(unsigned int, size_t, const unsigned int *, size_t, size_t *, void **)’ {aka ‘long unsigned int (*)(unsigned int, long unsigned int, const unsigned int *, long unsigned int, long unsigned int *, void **)’} [-Wincompatible-pointer-types] 88 | (H5Z_func_t)(lzf_filter) | ^ lzf/lzf_filter.c:88:9: note: (near initialization for ‘filter_class.name’) src/bitshuffle.c: In function ‘bshuf_compress_lz4_block’: src/bitshuffle.c:61:5: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 61 | nbytes = LZ4_compress((const char*) tmp_buf_bshuf, (char*) tmp_buf_lz4, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:697:75: note: declared here 697 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ src/bitshuffle.c: In function ‘bshuf_decompress_lz4_block’: src/bitshuffle.c:100:5: warning: ‘LZ4_decompress_fast’ is deprecated: This function is deprecated and unsafe. Consider using LZ4_decompress_safe() instead [-Wdeprecated-declarations] 100 | nbytes = LZ4_decompress_fast((const char*) in + 4, (char*) tmp_buf, size * elem_size); | ^~~~~~ In file included from src/bitshuffle.c:15: /usr/include/lz4.h:754:16: note: declared here 754 | LZ4LIB_API int LZ4_decompress_fast (const char* src, char* dst, int originalSize); | ^~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5' debian/rules override_dh_auto_test make[1]: Entering directory '/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5' set -e; \ for py in `py3versions -s -v`; do \ mpirun --allow-run-as-root -n 1 pybuild --test -i python{version} -p $py; \ done make[1]: Leaving directory '/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5' for flavour in serial openmpi; do\ pdir=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/tmp/`pkg-config --variable=PluginDir hdf5-$flavour`;\ builddir=/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/build-$flavour;\ install -d $pdir;\ install -t $pdir $builddir/*;\ done dh_auto_install I: pybuild base:237: /usr/bin/python3.10 setup.py install --root /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext ################################# # Compiling with OpenMP support # ################################# running install_lib creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10 creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/__init__.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests/__init__.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests/make_regression_tdata.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests/test_ext.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests/test_regression.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests/test_h5filter.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests/test_h5plugin.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests/data copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/tests/data/regression_0.1.3.h5 -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests/data copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/ext.cpython-310-x86_64-linux-gnu.so -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/h5.cpython-310-x86_64-linux-gnu.so -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/plugin copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-310-x86_64-linux-gnu.so -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/plugin copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.10_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-310-x86_64-linux-gnu.so -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/plugin byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/__init__.py to __init__.cpython-310.pyc byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests/__init__.py to __init__.cpython-310.pyc byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests/make_regression_tdata.py to make_regression_tdata.cpython-310.pyc byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests/test_ext.py to test_ext.cpython-310.pyc byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests/test_regression.py to test_regression.cpython-310.pyc byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests/test_h5filter.py to test_h5filter.cpython-310.pyc byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle/tests/test_h5plugin.py to test_h5plugin.cpython-310.pyc running install_egg_info running egg_info creating bitshuffle.egg-info writing bitshuffle.egg-info/PKG-INFO writing dependency_links to bitshuffle.egg-info/dependency_links.txt writing requirements to bitshuffle.egg-info/requires.txt writing top-level names to bitshuffle.egg-info/top_level.txt writing manifest file 'bitshuffle.egg-info/SOURCES.txt' reading manifest file 'bitshuffle.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.h' under directory 'lz4' warning: no files found matching '*.c' under directory 'lz4' warning: no previously-included files found matching 'setup.cfg' adding license file 'LICENSE' writing manifest file 'bitshuffle.egg-info/SOURCES.txt' Copying bitshuffle.egg-info to /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.10/dist-packages/bitshuffle-0.3.5.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext ################################# # Compiling with OpenMP support # ################################# running install_lib creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9 creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/__init__.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/__init__.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/make_regression_tdata.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/test_ext.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/test_regression.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/test_h5filter.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/test_h5plugin.py -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/data copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/tests/data/regression_0.1.3.h5 -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/data copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/ext.cpython-39-x86_64-linux-gnu.so -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/h5.cpython-39-x86_64-linux-gnu.so -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle creating /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/plugin copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin/libh5bshuf.cpython-39-x86_64-linux-gnu.so -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/plugin copying /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/.pybuild/cpython3_3.9_bitshuffle/build/bitshuffle/plugin/libh5LZF.cpython-39-x86_64-linux-gnu.so -> /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/plugin byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/__init__.py to __init__.cpython-39.pyc byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/make_regression_tdata.py to make_regression_tdata.cpython-39.pyc byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/test_ext.py to test_ext.cpython-39.pyc byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/test_regression.py to test_regression.cpython-39.pyc byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/test_h5filter.py to test_h5filter.cpython-39.pyc byte-compiling /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle/tests/test_h5plugin.py to test_h5plugin.cpython-39.pyc running install_egg_info running egg_info writing bitshuffle.egg-info/PKG-INFO writing dependency_links to bitshuffle.egg-info/dependency_links.txt writing requirements to bitshuffle.egg-info/requires.txt writing top-level names to bitshuffle.egg-info/top_level.txt reading manifest file 'bitshuffle.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.h' under directory 'lz4' warning: no files found matching '*.c' under directory 'lz4' warning: no previously-included files found matching 'setup.cfg' adding license file 'LICENSE' writing manifest file 'bitshuffle.egg-info/SOURCES.txt' Copying bitshuffle.egg-info to /build/bitshuffle-Gcb5tN/bitshuffle-0.3.5/debian/bitshuffle/usr/lib/python3.9/dist-packages/bitshuffle-0.3.5.egg-info Skipping SOURCES.txt running install_scripts make[1]: Leaving directory '/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5' debian/rules override_dh_install make[1]: Entering directory '/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5' dh_install dh_install -p bitshuffle /usr make[1]: Leaving directory '/build/bitshuffle-Gcb5tN/bitshuffle-0.3.5' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installinit -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package bitshuffle: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package bitshuffle: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'bitshuffle' in '../bitshuffle_0.3.5-4_amd64.deb'. dpkg-deb: building package 'bitshuffle-dbgsym' in '../bitshuffle-dbgsym_0.3.5-4_amd64.deb'. dpkg-genbuildinfo --build=any -O../bitshuffle_0.3.5-4_amd64.buildinfo dpkg-genchanges --build=any -O../bitshuffle_0.3.5-4_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/bitshuffle-Gcb5tN /tmp/bitshuffle-0.3.5-4844neyru I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.P4xXGXerPg... I: success in 586.1979 seconds md5: Value of 'md5' differs for bitshuffle-dbgsym_0.3.5-4_amd64.deb md5: Size differs for bitshuffle-dbgsym_0.3.5-4_amd64.deb md5: Value of 'md5' differs for bitshuffle_0.3.5-4_amd64.deb md5: Size differs for bitshuffle_0.3.5-4_amd64.deb sha1: Value of 'sha1' differs for bitshuffle-dbgsym_0.3.5-4_amd64.deb sha1: Size differs for bitshuffle-dbgsym_0.3.5-4_amd64.deb sha1: Value of 'sha1' differs for bitshuffle_0.3.5-4_amd64.deb sha1: Size differs for bitshuffle_0.3.5-4_amd64.deb sha256: Value of 'sha256' differs for bitshuffle-dbgsym_0.3.5-4_amd64.deb sha256: Size differs for bitshuffle-dbgsym_0.3.5-4_amd64.deb sha256: Value of 'sha256' differs for bitshuffle_0.3.5-4_amd64.deb sha256: Size differs for bitshuffle_0.3.5-4_amd64.deb Checksums: FAIL Cannot generate diffoscope for bitshuffle-dbgsym_0.3.5-4_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/25800671c3bac69a32e348b8dbddcdbeec6ab235cc4d2da729d3959a094b68dc/download Cannot generate diffoscope for bitshuffle_0.3.5-4_amd64.deb: RetryError[]