Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/berkeley-express/berkeley-express_1.5.3+dfsg-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/berkeley-express-1.5.3+dfsg-1buv3fqy0/berkeley-express_1.5.3+dfsg-1_all.buildinfo Get source package info: berkeley-express=1.5.3+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/berkeley-express/1.5.3+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11 automake=1:1.16.1-4 autopoint=0.19.8.1-9 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.46 bash=5.0-5 binutils=2.33.1-2 binutils-common=2.33.1-2 binutils-x86-64-linux-gnu=2.33.1-2 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.8 bzip2=1.0.8-2 cmake=3.15.4-1 cmake-data=3.15.4-1 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.2.1-19 dash=0.5.10.2-6 debconf=1.5.73 debhelper=12.7.1 debianutils=4.9 dh-autoreconf=19 dh-strip-nondeterminism=1.6.2-1 diffutils=1:3.7-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-2 fdisk=2.34-0.1 file=1:5.37-6 findutils=4.7.0-1 g++=4:9.2.1-3.1 g++-9=9.2.1-19 gcc=4:9.2.1-3.1 gcc-9=9.2.1-19 gcc-9-base=9.2.1-19 gettext=0.19.8.1-9 gettext-base=0.19.8.1-9 grep=3.3-1 groff-base=1.22.4-3 gzip=1.9-3+b1 hostname=3.23 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-5 libarchive-zip-perl=1.67-1 libarchive13=3.4.0-1+b1 libasan5=9.2.1-19 libatomic1=9.2.1-19 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-2 libaudit1=1:2.8.5-2 libbamtools-dev=2.5.1+dfsg-3 libbamtools2.5.1=2.5.1+dfsg-3 libbinutils=2.33.1-2 libblkid1=2.34-0.1 libboost-atomic1.67-dev=1.67.0-13 libboost-atomic1.67.0=1.67.0-13 libboost-chrono1.67-dev=1.67.0-13 libboost-chrono1.67.0=1.67.0-13 libboost-date-time-dev=1.67.0.2 libboost-date-time1.67-dev=1.67.0-13 libboost-date-time1.67.0=1.67.0-13 libboost-filesystem-dev=1.67.0.2 libboost-filesystem1.67-dev=1.67.0-13 libboost-filesystem1.67.0=1.67.0-13 libboost-program-options-dev=1.67.0.2 libboost-program-options1.67-dev=1.67.0-13 libboost-program-options1.67.0=1.67.0-13 libboost-serialization1.67-dev=1.67.0-13 libboost-serialization1.67.0=1.67.0-13 libboost-system-dev=1.67.0.2 libboost-system1.67-dev=1.67.0-13 libboost-system1.67.0=1.67.0-13 libboost-thread-dev=1.67.0.2 libboost-thread1.67-dev=1.67.0-13 libboost-thread1.67.0=1.67.0-13 libboost-tools-dev=1.67.0.2 libboost1.67-dev=1.67.0-13 libboost1.67-tools-dev=1.67.0-13 libbrotli1=1.0.7-5+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libc-bin=2.29-3 libc-dev-bin=2.29-3 libc6=2.29-3 libc6-dev=2.29-3 libcap-ng0=0.7.9-2.1 libcc1-0=9.2.1-19 libcom-err2=1.45.4-1 libcroco3=0.6.13-1 libcurl4=7.66.0-1+b1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.250 libdebhelper-perl=12.7.1 libdpkg-perl=1.19.7 libelf1=0.176-1.1 libexpat1=2.2.9-1 libfdisk1=2.34-0.1 libffi6=3.2.1-9 libfile-stripnondeterminism-perl=1.6.2-1 libgcc-9-dev=9.2.1-19 libgcc1=1:9.2.1-19 libgcrypt20=1.8.5-3 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libglib2.0-0=2.62.2-3 libgmp10=2:6.1.2+dfsg-4 libgnutls30=3.6.10-4 libgomp1=9.2.1-19 libgoogle-perftools-dev=2.7-1+b1 libgoogle-perftools4=2.7-1+b1 libgpg-error0=1.36-7 libgssapi-krb5-2=1.17-6 libhogweed5=3.5.1+really3.5.1-2 libicu63=63.2-2 libidn2-0=2.2.0-2 libisl21=0.21-2 libitm1=9.2.1-19 libjsoncpp1=1.7.4-3+b1 libk5crypto3=1.17-6 libkeyutils1=1.6-6 libkrb5-3=1.17-6 libkrb5support0=1.17-6 libldap-2.4-2=2.4.48+dfsg-1+b2 libldap-common=2.4.48+dfsg-1 liblsan0=9.2.1-19 liblz4-1=1.9.2-2 liblzma-dev=5.2.4-1+b1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.37-6 libmagic1=1:5.37-6 libmount1=2.34-0.1 libmpc3=1.1.0-1 libmpfr6=4.0.2-1 libncurses6=6.1+20191019-1 libncursesw6=6.1+20191019-1 libnettle7=3.5.1+really3.5.1-2 libnghttp2-14=1.39.2-1 libp11-kit0=0.23.18.1-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.32-5+b1 libpcre3=2:8.39-12+b1 libperl5.30=5.30.0-9 libpipeline1=1.5.1-2 libprocps7=2:3.3.15-2+b1 libprotobuf-dev=3.6.1.3-2+b1 libprotobuf-lite17=3.6.1.3-2+b1 libprotobuf17=3.6.1.3-2+b1 libprotoc17=3.6.1.3-2+b1 libpsl5=0.20.2-2 libquadmath0=9.2.1-19 librhash0=1.3.8-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2=2.1.27+dfsg-1 libsasl2-modules-db=2.1.27+dfsg-1 libseccomp2=2.4.2-1 libselinux1=2.9-3 libsigsegv2=2.12-2 libsmartcols1=2.34-0.1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1d-2 libstdc++-9-dev=9.2.1-19 libstdc++6=9.2.1-19 libsub-override-perl=0.09-2 libsystemd0=243-5 libtasn1-6=4.14-3 libtcmalloc-minimal4=2.7-1+b1 libtinfo6=6.1+20191019-1 libtool=2.4.6-11 libtsan0=9.2.1-19 libubsan1=9.2.1-19 libuchardet0=0.0.6-3 libudev1=243-5 libunistring2=0.9.10-2 libunwind-dev=1.2.1-9 libunwind8=1.2.1-9 libuuid1=2.34-0.1 libuv1=1.33.1-2 libxml2=2.9.4+dfsg1-7+b4 libzstd1=1.4.3+dfsg-1 linux-libc-dev=5.3.9-2 login=1:4.7-2 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-1.2 man-db=2.9.0-1 mawk=1.3.3-17+b3 ncurses-base=6.1+20191019-1 ncurses-bin=6.1+20191019-1 patch=2.7.6-6 perl=5.30.0-9 perl-base=5.30.0-9 perl-modules-5.30=5.30.0-9 po-debconf=1.0.21 procps=2:3.3.15-2+b1 protobuf-compiler=3.6.1.3-2+b1 sed=4.7-1 sensible-utils=0.0.12 sysvinit-utils=2.96-1 tar=1.30+dfsg-6+b1 util-linux=2.34-0.1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-1+b1 zlib1g-dev=1:1.2.11.dfsg-1+b1 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20191119T090047Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20191114T152956Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d berkeley-express=1.5.3+dfsg-1 && mkdir -p /build/berkeley-express-7EHosk && dpkg-source --no-check -x /*.dsc /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg && chown -R builduser:builduser /build/berkeley-express-7EHosk" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1574007445" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/berkeley-express-7EHosk /tmp/berkeley-express-1.5.3+dfsg-1buv3fqy0 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20191114T152956Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.q0HjAGnXO2 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.q0HjAGnXO2 Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20191114T152956Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20191114T152956Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (740 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4504 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.29-3) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20191119T090047Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20191114T152956Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.q0HjAGnXO2 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20191119T090047Z unstable InRelease [139 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20191114T152956Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20191119T090047Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20191119T090047Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20191119T090047Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20191119T090047Z unstable/main amd64 Packages [11.1 MB] Fetched 33.8 MB in 29s (1181 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.q0HjAGnXO2 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d berkeley-express=1.5.3+dfsg-1 && mkdir -p /build/berkeley-express-7EHosk && dpkg-source --no-check -x /*.dsc /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg && chown -R builduser:builduser /build/berkeley-express-7EHosk"' exec /tmp/mmdebstrap.q0HjAGnXO2 Reading package lists... NOTICE: 'berkeley-express' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/berkeley-express.git Please use: git clone https://salsa.debian.org/med-team/berkeley-express.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 379 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main berkeley-express 1.5.3+dfsg-1 (dsc) [2475 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main berkeley-express 1.5.3+dfsg-1 (tar) [366 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main berkeley-express 1.5.3+dfsg-1 (diff) [10.3 kB] Fetched 379 kB in 0s (817 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'berkeley-express_1.5.3+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting berkeley-express in /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg dpkg-source: info: unpacking berkeley-express_1.5.3+dfsg.orig.tar.xz dpkg-source: info: unpacking berkeley-express_1.5.3+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling-fixes dpkg-source: info: applying fix-bamtools-path dpkg-source: info: applying drop-zlib dpkg-source: info: applying correct-debug-flags.patch dpkg-source: info: applying privacy-breach.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1574007445" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.q0HjAGnXO2 dpkg-buildpackage: info: source package berkeley-express dpkg-buildpackage: info: source version 1.5.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg' dh_clean src/config.h make[1]: Leaving directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg' debian/rules build-indep dh build-indep dh_update_autotools_config -i dh_autoreconf -i dh_auto_configure -i cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Boost: /usr/include (found suitable version "1.67.0", minimum required is "1.39") found components: thread system filesystem program_options date_time chrono atomic -- Found GPERFTOOLS_TCMALLOC: /usr/lib/x86_64-linux-gnu/libtcmalloc.so -- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so;-lpthread (found version "3.6.1") -- Do not try to find libbamtools.a -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu dh_auto_build -i cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg -B/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend make[3]: Entering directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' [ 5%] Running cpp protocol buffer compiler on /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/targets.proto cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/protoc --cpp_out /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src -I /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/targets.proto [ 11%] Running cpp protocol buffer compiler on /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/alignments.proto cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/protoc --cpp_out /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src -I /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/alignments.proto [libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: targets.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) [libprotobuf WARNING google/protobuf/compiler/parser.cc:562] No syntax specified for the proto file: alignments.proto. Please use 'syntax = "proto2";' or 'syntax = "proto3";' to specify a syntax version. (Defaulted to proto2 syntax.) cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake --color= Scanning dependencies of target express make[3]: Leaving directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/build make[3]: Entering directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' [ 22%] Building CXX object src/CMakeFiles/express.dir/fragments.cpp.o [ 22%] Building CXX object src/CMakeFiles/express.dir/bundles.cpp.o [ 27%] Building CXX object src/CMakeFiles/express.dir/biascorrection.cpp.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/bundles.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/bundles.cpp cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/fragments.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/fragments.cpp [ 33%] Building CXX object src/CMakeFiles/express.dir/directiondetector.cpp.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/biascorrection.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/biascorrection.cpp cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/directiondetector.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/directiondetector.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 38%] Building CXX object src/CMakeFiles/express.dir/lengthdistribution.cpp.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/lengthdistribution.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/lengthdistribution.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 44%] Building CXX object src/CMakeFiles/express.dir/main.cpp.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/main.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/main.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 50%] Building CXX object src/CMakeFiles/express.dir/mapparser.cpp.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/mapparser.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/mapparser.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 55%] Building CXX object src/CMakeFiles/express.dir/markovmodel.cpp.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/markovmodel.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/markovmodel.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 61%] Building CXX object src/CMakeFiles/express.dir/mismatchmodel.cpp.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/mismatchmodel.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/mismatchmodel.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 66%] Building CXX object src/CMakeFiles/express.dir/robertsfilter.cpp.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/robertsfilter.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/robertsfilter.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 72%] Building CXX object src/CMakeFiles/express.dir/sequence.cpp.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/sequence.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/sequence.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 77%] Building CXX object src/CMakeFiles/express.dir/targets.cpp.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/targets.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/targets.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 83%] Building CXX object src/CMakeFiles/express.dir/threadsafety.cpp.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/threadsafety.cpp.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src/threadsafety.cpp : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 88%] Building CXX object src/CMakeFiles/express.dir/alignments.pb.cc.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/alignments.pb.cc.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/alignments.pb.cc : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [ 94%] Building CXX object src/CMakeFiles/express.dir/targets.pb.cc.o cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/bamtools -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -std=gnu++11 -o CMakeFiles/express.dir/targets.pb.cc.o -c /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/targets.pb.cc : warning: "__FILE__" redefined [-Wbuiltin-macro-redefined] [100%] Linking CXX executable express cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/express.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D__FILE__=\"\" -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/express.dir/biascorrection.cpp.o CMakeFiles/express.dir/bundles.cpp.o CMakeFiles/express.dir/directiondetector.cpp.o CMakeFiles/express.dir/fragments.cpp.o CMakeFiles/express.dir/lengthdistribution.cpp.o CMakeFiles/express.dir/main.cpp.o CMakeFiles/express.dir/mapparser.cpp.o CMakeFiles/express.dir/markovmodel.cpp.o CMakeFiles/express.dir/mismatchmodel.cpp.o CMakeFiles/express.dir/robertsfilter.cpp.o CMakeFiles/express.dir/sequence.cpp.o CMakeFiles/express.dir/targets.cpp.o CMakeFiles/express.dir/threadsafety.cpp.o CMakeFiles/express.dir/alignments.pb.cc.o CMakeFiles/express.dir/targets.pb.cc.o -o express -lboost_thread -lpthread -lboost_system -lboost_filesystem -lboost_program_options -lboost_date_time -lboost_chrono -lboost_atomic -lbamtools -lprotobuf -lpthread -lrt make[3]: Leaving directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' [100%] Built target express make[2]: Leaving directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' dh_auto_test -i create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep dh binary-indep dh_testroot -i dh_prep -i dh_auto_install -i cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/berkeley-express-7EHosk/berkeley-express-1.5.3\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg -B/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/depend make[3]: Entering directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' cd /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/src /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/express.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/express.dir/build.make src/CMakeFiles/express.dir/build make[3]: Entering directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/express.dir/build'. make[3]: Leaving directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' [100%] Built target express make[2]: Leaving directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/debian/tmp/usr/bin/express make[1]: Leaving directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg/obj-x86_64-linux-gnu' dh_install -i dh_installdocs -i dh_installchangelogs -i dh_installexamples -i dh_installman -i dh_perl -i dh_link -i dh_strip_nondeterminism -i debian/rules override_dh_compress make[1]: Entering directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg' dh_compress --exclude=express-doc.pdf make[1]: Leaving directory '/build/berkeley-express-7EHosk/berkeley-express-1.5.3+dfsg' dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'berkeley-express-doc' in '../berkeley-express-doc_1.5.3+dfsg-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../berkeley-express_1.5.3+dfsg-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/berkeley-express-7EHosk /tmp/berkeley-express-1.5.3+dfsg-1buv3fqy0 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.q0HjAGnXO2... I: success in 624.6723 seconds md5: berkeley-express-doc_1.5.3+dfsg-1_all.deb: OK sha1: berkeley-express-doc_1.5.3+dfsg-1_all.deb: OK sha256: berkeley-express-doc_1.5.3+dfsg-1_all.deb: OK Checksums: OK