Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/beast2-mcmc/beast2-mcmc_2.6.3+dfsg-2_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/beast2-mcmc-2.6.3+dfsg-22x6pzqyu/beast2-mcmc_2.6.3+dfsg-2_all.buildinfo Get source package info: beast2-mcmc=2.6.3+dfsg-2 Source URL: http://snapshot.notset.fr/mr/package/beast2-mcmc/2.6.3+dfsg-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 ant=1.10.8-1 ant-optional=1.10.8-1 autoconf=2.69-11.1 automake=1:1.16.2-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-7 beignet-opencl-icd=1.3.2-7 binutils=2.35.1-1 binutils-common=2.35.1-1 binutils-x86-64-linux-gnu=2.35.1-1 bsdextrautils=2.36-3+b1 bsdutils=1:2.36-3+b1 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 ca-certificates-java=20190909 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-12 dash=0.5.10.2-7 dctrl-tools=2.24-3+b1 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 default-jdk=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 devscripts=2.20.4 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dirmngr=2.2.20-1 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 fakeroot=1.25.1-1 file=1:5.38-5 findutils=4.7.0-1 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-lmodern=2.004.5-6 g++=4:10.2.0-1 g++-10=10.2.0-12 gcc=4:10.2.0-1 gcc-10=10.2.0-12 gcc-10-base=10.2.0-12 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gnupg=2.2.20-1 gnupg-l10n=2.2.20-1 gnupg-utils=2.2.20-1 gpg=2.2.20-1 gpg-agent=2.2.20-1 gpg-wks-client=2.2.20-1 gpg-wks-server=2.2.20-1 gpgconf=2.2.20-1 gpgsm=2.2.20-1 gpgv=2.2.20-1 grep=3.4-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.58 intltool-debian=0.35.0+20060710.5 java-common=0.72 javahelper=0.77 junit4=4.12-8 libacl1=2.2.53-8 libantlr4-runtime-java=4.7.2-2 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libasan6=10.2.0-12 libasound2=1.2.3.2-1 libasound2-data=1.2.3.2-1 libassuan0=2.5.3-7.1 libatomic1=10.2.0-12 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libavahi-client3=0.8-3 libavahi-common-data=0.8-3 libavahi-common3=0.8-3 libb-hooks-op-check-perl=0.22-1+b2 libbinutils=2.35.1-1 libblkid1=2.36-3+b1 libbrotli1=1.0.9-2 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-3 libc-dev-bin=2.31-3 libc6=2.31-3 libc6-dev=2.31-3 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2.2 libcc1-0=10.2.0-12 libclass-method-modifiers-perl=2.13-1 libcolt-free-java=1.2.0+dfsg-7 libcom-err2=1.45.6-1 libcommons-logging-java=1.2-2 libcommons-parent-java=43-1 libconcurrent-java=1.3.4-4 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-1 libctf0=2.35.1-1 libcups2=2.3.3-3 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.20-1 libdebconfclient0=0.254 libdebhelper-perl=13.2.1 libdevel-callchecker-perl=0.008-1+b1 libdpkg-perl=1.20.5 libdrm-amdgpu1=2.4.102-1 libdrm-common=2.4.102-1 libdrm-intel1=2.4.102-1 libdrm-nouveau2=2.4.102-1 libdrm-radeon1=2.4.102-1 libdrm2=2.4.102-1 libdynaloader-functions-perl=0.003-1 libedit2=3.1-20191231-1 libelf1=0.181-1 libencode-locale-perl=1.05-1 libexpat1=2.2.9-1 libfakeroot=1.25.1-1 libfest-util-java=1.2.5-1 libffi7=3.3-4 libfile-homedir-perl=1.006-1 libfile-listing-perl=6.07-1 libfile-stripnondeterminism-perl=1.9.0-1 libfile-which-perl=1.23-1 libfontbox-java=1:1.8.16-2 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.2+dfsg-3 libgcc-10-dev=10.2.0-12 libgcc-s1=10.2.0-12 libgcrypt20=1.8.6-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgif7=5.1.9-1 libgl1=1.3.2-1 libgl1-mesa-dri=20.1.9-1 libglapi-mesa=20.1.9-1 libglib2.0-0=2.66.0-2 libglvnd0=1.3.2-1 libglx-mesa0=20.1.9-1 libglx0=1.3.2-1 libgmp10=2:6.2.0+dfsg-6 libgnutls30=3.6.15-4 libgomp1=10.2.0-12 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.17-10 libhamcrest-java=1.3-9 libharfbuzz0b=2.6.7-1 libhmsbeagle-java=3.1.2+dfsg-8 libhmsbeagle1v5=3.1.2+dfsg-8 libhogweed6=3.6-2 libhtml-parser-perl=3.75-1 libhtml-tagset-perl=3.20-4 libhtml-tree-perl=5.07-2 libhttp-cookies-perl=6.08-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.26-1 libhttp-negotiate-perl=6.01-1 libice6=2:1.0.10-1 libicu67=67.1-4 libidn2-0=2.3.0-1 libimport-into-perl=1.002005-1 libio-html-perl=1.001-1 libio-pty-perl=1:1.12-1 libio-socket-ssl-perl=2.068-1 libipc-run-perl=20200505.0-1 libisl22=0.22.1-1 libitm1=10.2.0-12 libjam-java=0.1.git20180106.740247a+dfsg-1 libjpeg62-turbo=1:2.0.5-1.1 libk5crypto3=1.17-10 libkeyutils1=1.6.1-2 libkpathsea6=2020.20200327.54578-5 libkrb5-3=1.17-10 libkrb5support0=1.17-10 libksba8=1.4.0-2 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.53+dfsg-1 libllvm10=1:10.0.1-6 liblsan0=10.2.0-12 liblwp-mediatypes-perl=6.04-1 liblwp-protocol-https-perl=6.09-1 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmodule-runtime-perl=0.016-1 libmoo-perl=2.004000-1 libmount1=2.36-3+b1 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20200918-1 libnet-http-perl=6.19-1 libnet-ssleay-perl=1.88-3 libnettle8=3.6-2 libnpth0=1.6-2 libnspr4=2:4.28-1 libnss3=2:3.56-1 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libparams-classify-perl=0.015-1+b2 libpciaccess0=0.16-1 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libpcsclite1=1.9.0-1 libpdfbox-java=1:1.8.16-2 libperl5.30=5.30.3-4 libpipeline1=1.5.3-1 libpixman-1-0=0.36.0-1 libpng16-16=1.6.37-3 libptexenc1=2020.20200327.54578-5 libpython3-stdlib=3.8.2-3 libpython3.8-minimal=3.8.6-1 libpython3.8-stdlib=3.8.6-1 libquadmath0=10.2.0-12 libreadline8=8.0-4 librole-tiny-perl=2.001004-1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.4.4-1 libselinux1=3.1-2 libsemanage-common=3.1-1 libsemanage1=3.1-1 libsensors-config=1:3.6.0-2 libsensors5=1:3.6.0-2 libsepol1=3.1-1 libsigsegv2=2.12-2 libsm6=2:1.2.3-1 libsmartcols1=2.36-3+b1 libsqlite3-0=3.33.0-1 libssl1.1=1.1.1g-1 libstdc++-10-dev=10.2.0-12 libstdc++6=10.2.0-12 libstrictures-perl=2.000006-1 libsub-override-perl=0.09-2 libsub-quote-perl=2.006006-1 libsynctex2=2020.20200327.54578-5 libsystemd0=246.6-1 libtasn1-6=4.16.0-2 libteckit0=2.5.10+ds1-3 libtexlua53=2020.20200327.54578-5 libtexluajit2=2020.20200327.54578-5 libtimedate-perl=2.3300-1 libtinfo6=6.2+20200918-1 libtool=2.4.6-14 libtry-tiny-perl=0.30-1 libtsan0=10.2.0-12 libubsan1=10.2.0-12 libuchardet0=0.0.7-1 libudev1=246.6-1 libunistring2=0.9.10-4 liburi-perl=1.76-2 libuuid1=2.36-3+b1 libvulkan1=1.2.148.1-1 libwww-perl=6.49-1 libwww-robotrules-perl=6.02-1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libx11-xcb1=2:1.6.12-1 libxau6=1:1.0.8-1+b2 libxaw7=2:1.0.13-1+b2 libxcb-dri2-0=1.14-2 libxcb-dri3-0=1.14-2 libxcb-glx0=1.14-2 libxcb-present0=1.14-2 libxcb-render0=1.14-2 libxcb-shm0=1.14-2 libxcb-sync1=1.14-2 libxcb1=1.14-2 libxdamage1=1:1.1.5-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxfixes3=1:5.0.3-2 libxi6=2:1.7.10-1 libxml2=2.9.10+dfsg-6 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxt6=1:1.2.0-1 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.9-1 libzstd1=1.4.5+dfsg-4 libzzip-0-13=0.13.62-3.2 linux-libc-dev=5.8.10-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 mime-support=3.64 ncurses-base=6.2+20200918-1 ncurses-bin=6.2+20200918-1 netbase=6.1 ocl-icd-libopencl1=2.2.12-4 openjdk-11-jdk=11.0.8+10-1 openjdk-11-jdk-headless=11.0.8+10-1 openjdk-11-jre=11.0.8+10-1 openjdk-11-jre-headless=11.0.8+10-1 openssl=1.1.1g-1 passwd=1:4.8.1-1 patch=2.7.6-6 patchutils=0.4.2-1 perl=5.30.3-4 perl-base=5.30.3-4 perl-modules-5.30=5.30.3-4 perl-openssl-defaults=5 pinentry-curses=1.1.0-4 po-debconf=1.0.21 preview-latex-style=12.2-1 python3=3.8.2-3 python3-minimal=3.8.2-3 python3.8=3.8.6-1 python3.8-minimal=3.8.6-1 readline-common=8.0-4 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 t1utils=1.41-4 tar=1.30+dfsg-7 tex-common=6.15 texlive-base=2020.20200925-1 texlive-binaries=2020.20200327.54578-5 texlive-latex-base=2020.20200925-1 texlive-latex-extra=2020.20200925-1 texlive-latex-recommended=2020.20200925-1 texlive-pictures=2020.20200925-1 ucf=3.0043 util-linux=2.36-3+b1 wdiff=1.2.2-2+b1 x11-common=1:7.7+20 xdg-utils=1.1.3-2 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201007T144719Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200930T204132Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d beast2-mcmc=2.6.3+dfsg-2 && mkdir -p /build/beast2-mcmc-IJZzAS && dpkg-source --no-check -x /*.dsc /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg && chown -R builduser:builduser /build/beast2-mcmc-IJZzAS" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1601727821" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/beast2-mcmc-IJZzAS /tmp/beast2-mcmc-2.6.3+dfsg-22x6pzqyu bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200930T204132Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.cJLe9BgfmV as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.cJLe9BgfmV Reading package lists... Building dependency tree... util-linux is already the newest version (2.36-3+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200930T204132Z unstable/main amd64 libfakeroot amd64 1.25.1-1 [46.8 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200930T204132Z unstable/main amd64 fakeroot amd64 1.25.1-1 [86.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (656 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4582 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.1-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.1-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.1-1_amd64.deb ... Unpacking fakeroot (1.25.1-1) ... Setting up libfakeroot:amd64 (1.25.1-1) ... Setting up fakeroot (1.25.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-3) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201007T144719Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200930T204132Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.cJLe9BgfmV Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201007T144719Z unstable InRelease [146 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20200930T204132Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20201007T144719Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201007T144719Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201007T144719Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20201007T144719Z unstable/main amd64 Packages [11.4 MB] Fetched 34.1 MB in 28s (1215 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.cJLe9BgfmV I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d beast2-mcmc=2.6.3+dfsg-2 && mkdir -p /build/beast2-mcmc-IJZzAS && dpkg-source --no-check -x /*.dsc /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg && chown -R builduser:builduser /build/beast2-mcmc-IJZzAS"' exec /tmp/mmdebstrap.cJLe9BgfmV Reading package lists... NOTICE: 'beast2-mcmc' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/beast2-mcmc.git Please use: git clone https://salsa.debian.org/med-team/beast2-mcmc.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 22.3 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main beast2-mcmc 2.6.3+dfsg-2 (dsc) [2446 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main beast2-mcmc 2.6.3+dfsg-2 (tar) [22.3 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main beast2-mcmc 2.6.3+dfsg-2 (diff) [17.1 kB] Fetched 22.3 MB in 18s (1269 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'beast2-mcmc_2.6.3+dfsg-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting beast2-mcmc in /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg dpkg-source: info: unpacking beast2-mcmc_2.6.3+dfsg.orig.tar.xz dpkg-source: info: unpacking beast2-mcmc_2.6.3+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_classpath_in_build_xml.patch dpkg-source: info: applying remove_appbundler.patch dpkg-source: info: applying antlr-compatibility.patch dpkg-source: info: applying remove_mac_only_code.patch dpkg-source: info: applying remove_jsign_from_build.patch dpkg-source: info: applying accents_in_source.patch dpkg-source: info: applying remove_import_swing_security.patch dpkg-source: info: applying adapt_source_to_Debian_jar_path.patch dpkg-source: info: applying handling_minor_issues_in_tests.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1601727821" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.cJLe9BgfmV dpkg-buildpackage: info: source package beast2-mcmc dpkg-buildpackage: info: source version 2.6.3+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . debian/rules clean dh clean --with javahelper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg' # skip as it needs patches applied make[1]: Leaving directory '/build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg' jh_clean dh_clean debian/rules binary-indep dh binary-indep --with javahelper dh_update_autotools_config -i dh_autoreconf -i dh_auto_configure -i jh_linkjars -i debian/rules override_dh_auto_build make[1]: Entering directory '/build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg' # move tests requiring fest.swing out of the way mv src/test/beast/app/beauti debian/fest_swing_tests dh_auto_build ant -Duser.name debian Buildfile: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build.xml clean: init: [echo] BUILD_BEAST_2: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build.xml compile-all: [echo] Building BEAST 2 [mkdir] Created dir: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build [javac] Compiling 490 source files to /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 1 warning [delete] Deleting: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/beast/app/beauti/BeautiLauncher.class [delete] Deleting: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/beast/app/tools/AppLauncherLauncher.class [delete] Deleting: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/beast/app/tools/LogCombinerLauncher.class [delete] Deleting: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/beast/app/treeannotator/TreeAnnotatorLauncher.class [delete] Deleting: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/beast/app/util/Utils6.class [delete] Deleting: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/beast/app/BEASTVersion.class [delete] Deleting: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/beast/util/BEASTClassLoader.class [delete] Deleting: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/beast/app/util/Version.class [javac] Compiling 15 source files to /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings [copy] Copying 67 files to /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build [echo] Successfully compiled. junit: [mkdir] Created dir: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/junitreport [junit] Running test.beast.app.BeautiSubTemplateTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.903 sec [junit] Running test.beast.app.BeautiTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.31 sec [junit] Running test.beast.app.tools.LogCombinerTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.513 sec [junit] Running test.beast.core.BEASTInterfaceTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.813 sec [junit] Running test.beast.core.InputForAnnotatedConstructorTest [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.385 sec [junit] Running test.beast.core.InputTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.905 sec [junit] Running test.beast.core.LoggerTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.813 sec [junit] Running test.beast.core.OperatorScheduleTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.791 sec [junit] Running test.beast.core.StateNodeInitialiserTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.706 sec [junit] Running test.beast.core.parameter.BooleanParameterListTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.805 sec [junit] Running test.beast.core.parameter.IntegerParameterListTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.887 sec [junit] Running test.beast.core.parameter.ParameterTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.703 sec [junit] Running test.beast.core.parameter.RealParameterListTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.796 sec [junit] Running test.beast.core.util.SumTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.623 sec [junit] Running test.beast.evolution.alignment.FilteredAlignmentTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.477 sec [junit] Running test.beast.evolution.alignment.UncertainAlignmentTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.723 sec [junit] Running test.beast.evolution.alignment.UnorderedAlignmentsTest [junit] beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware [junit] (If you have multiple ICDs installed and OpenCL works, you can ignore this message) [junit] [junit] OpenCL error: CL_DEVICE_NOT_FOUND from file , line 122. [junit] Running test.beast.evolution.alignment.UnorderedAlignmentsTest [junit] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec [junit] Test test.beast.evolution.alignment.UnorderedAlignmentsTest FAILED (crashed) [junit] Running test.beast.evolution.datatype.DataTypeDeEncodeTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.815 sec [junit] Running test.beast.evolution.datatype.IntegerDataTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.616 sec [junit] Running test.beast.evolution.likelihood.TreeLikelihoodTest [junit] beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware [junit] (If you have multiple ICDs installed and OpenCL works, you can ignore this message) [junit] [junit] OpenCL error: CL_DEVICE_NOT_FOUND from file , line 122. [junit] Running test.beast.evolution.likelihood.TreeLikelihoodTest [junit] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec [junit] Test test.beast.evolution.likelihood.TreeLikelihoodTest FAILED (crashed) [junit] Running test.beast.evolution.operator.CompoundParameterHelperTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.727 sec [junit] Running test.beast.evolution.operator.DeltaExchangeOperatorTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.72 sec [junit] Running test.beast.evolution.operator.ExchangeOperatorTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 57.212 sec [junit] Running test.beast.evolution.operator.IntRandomWalkOperatorTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 29.433 sec [junit] Running test.beast.evolution.operator.ScaleOperatorTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.03 sec [junit] Running test.beast.evolution.operator.UniformIntegerOperatorTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.723 sec [junit] Running test.beast.evolution.operator.WilsonBaldingTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 13.707 sec [junit] Running test.beast.evolution.speciation.BirthDeathGernhard08ModelTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.298 sec [junit] Running test.beast.evolution.speciation.YuleModelTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.009 sec [junit] Running test.beast.evolution.substmodel.BinaryCovarionModelTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.089 sec [junit] Running test.beast.evolution.substmodel.GTRTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.816 sec [junit] Running test.beast.evolution.substmodel.GeneralSubstitutionModelTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.885 sec [junit] Running test.beast.evolution.substmodel.HKYTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.814 sec [junit] Running test.beast.evolution.tree.NodeTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.099 sec [junit] Running test.beast.evolution.tree.RandomTreeTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 34.035 sec [junit] Running test.beast.evolution.tree.TraitSetTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.853 sec [junit] Running test.beast.evolution.tree.TreeAnnotatorTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.603 sec [junit] Running test.beast.evolution.tree.TreeTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.121 sec [junit] Running test.beast.evolution.tree.TreeUtilsTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.089 sec [junit] Running test.beast.evolution.tree.coalescent.BayesianSkylineTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.267 sec [junit] Running test.beast.evolution.tree.coalescent.CoalescentTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.088 sec [junit] Running test.beast.integration.DocumentationTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.599 sec [junit] Running test.beast.integration.ExampleJSONParsingTest [junit] beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware [junit] (If you have multiple ICDs installed and OpenCL works, you can ignore this message) [junit] [junit] OpenCL error: CL_DEVICE_NOT_FOUND from file , line 122. [junit] Running test.beast.integration.ExampleJSONParsingTest [junit] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec [junit] Test test.beast.integration.ExampleJSONParsingTest FAILED (crashed) [junit] Running test.beast.integration.ExampleXmlParsingTest [junit] beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware [junit] (If you have multiple ICDs installed and OpenCL works, you can ignore this message) [junit] [junit] OpenCL error: CL_DEVICE_NOT_FOUND from file , line 122. [junit] Running test.beast.integration.ExampleXmlParsingTest [junit] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec [junit] Test test.beast.integration.ExampleXmlParsingTest FAILED (crashed) [junit] Running test.beast.integration.InputTypeTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.942 sec [junit] Running test.beast.integration.ResumeTest [junit] beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware [junit] (If you have multiple ICDs installed and OpenCL works, you can ignore this message) [junit] [junit] OpenCL error: CL_DEVICE_NOT_FOUND from file , line 122. [junit] Running test.beast.integration.ResumeTest [junit] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec [junit] Test test.beast.integration.ResumeTest FAILED (crashed) [junit] Running test.beast.integration.XMLElementNameTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.842 sec [junit] Running test.beast.integration.XMLProducerTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 34.499 sec [junit] Running test.beast.math.distributions.GammaTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.378 sec [junit] Running test.beast.math.distributions.InvGammaTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.791 sec [junit] Running test.beast.math.distributions.LaplaceDistributionTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 15.895 sec [junit] Running test.beast.math.distributions.LogNormalDistributionModelTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 27.784 sec [junit] Running test.beast.math.distributions.MRCAPriorTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.271 sec [junit] Running test.beast.math.distributions.MeanOfParametricDistributionTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.48 sec [junit] Running test.beast.math.distributions.NormalDistributionTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 17.44 sec [junit] Running test.beast.statistic.RPNCalculatorTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.922 sec [junit] Running test.beast.util.ClusterTreeTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.364 sec [junit] Running test.beast.util.JSONTest [junit] beignet-opencl-icd: no supported GPU found, this is probably the wrong opencl-icd package for this hardware [junit] (If you have multiple ICDs installed and OpenCL works, you can ignore this message) [junit] [junit] OpenCL error: CL_DEVICE_NOT_FOUND from file , line 122. [junit] Running test.beast.util.JSONTest [junit] Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 0 sec [junit] Test test.beast.util.JSONTest FAILED (crashed) [junit] Running test.beast.util.NexusParserTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 10.623 sec [junit] Running test.beast.util.RandomizerTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.692 sec [junit] Running test.beast.util.TreeParserTest [junit] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.714 sec [junit] Running test.beast.util.XMLParserTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.108 sec [junit] Running test.beast.util.XMLTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.02 sec [echo] JUnit test finished. dist_all_BEAST: [mkdir] Created dir: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/dist [jar] Building jar: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/dist/beast.jar [jar] Building jar: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/dist/launcher.jar [jar] Building jar: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/build/dist/beast.src.jar [mkdir] Created dir: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/release/package [mkdir] Created dir: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/release/package/lib [copy] Copying 1 file to /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/release/package [copy] Copying 1 file to /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/release/package/lib [copy] Copying 1 file to /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/release/package [jar] Building jar: /build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg/release/package/BEAST.package.v2.6.3.zip build_jar_all_BEAST: BUILD SUCCESSFUL Total time: 10 minutes 8 seconds mv debian/fest_swing_tests src/test/beast/app/beauti make[1]: Leaving directory '/build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg' dh_auto_test -i create-stamp debian/debhelper-build-stamp dh_testroot -i dh_prep -i dh_auto_install -i dh_install -i jh_installjavadoc -i dh_installdocs -i dh_installchangelogs -i dh_installman -i dh_perl -i dh_link -i jh_installlibs -i jh_classpath -i jh_manifest -i jh_exec -i jh_depends -i dh_strip_nondeterminism -i debian/rules override_dh_compress make[1]: Entering directory '/build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/beast2-mcmc-IJZzAS/beast2-mcmc-2.6.3+dfsg' dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dpkg-gencontrol: warning: Depends field of package beast2-mcmc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package beast2-mcmc-doc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package beast2-mcmc-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'beast2-mcmc-examples' in '../beast2-mcmc-examples_2.6.3+dfsg-2_all.deb'. dpkg-deb: building package 'beast2-mcmc-doc' in '../beast2-mcmc-doc_2.6.3+dfsg-2_all.deb'. dpkg-deb: building package 'beast2-mcmc' in '../beast2-mcmc_2.6.3+dfsg-2_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../beast2-mcmc_2.6.3+dfsg-2_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/beast2-mcmc-IJZzAS /tmp/beast2-mcmc-2.6.3+dfsg-22x6pzqyu I: cleaning package lists and apt cache... W: deleting files in /tmp: JSONTest.json W: deleting files in /tmp: source.trees W: deleting files in /tmp: hsperfdata_builduser W: deleting files in /tmp: XMLTest.xml W: deleting files in /tmp: summary.tree W: deleting files in /tmp: target.tree W: deleting files in /tmp: JSONTest2.json W: deleting files in /tmp: JSONTest3.json W: deleting files in /tmp: hsperfdata_root I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.cJLe9BgfmV... I: success in 1430.3525 seconds md5: beast2-mcmc-doc_2.6.3+dfsg-2_all.deb: OK md5: beast2-mcmc-examples_2.6.3+dfsg-2_all.deb: OK md5: beast2-mcmc_2.6.3+dfsg-2_all.deb: OK sha1: beast2-mcmc-doc_2.6.3+dfsg-2_all.deb: OK sha1: beast2-mcmc-examples_2.6.3+dfsg-2_all.deb: OK sha1: beast2-mcmc_2.6.3+dfsg-2_all.deb: OK sha256: beast2-mcmc-doc_2.6.3+dfsg-2_all.deb: OK sha256: beast2-mcmc-examples_2.6.3+dfsg-2_all.deb: OK sha256: beast2-mcmc_2.6.3+dfsg-2_all.deb: OK Checksums: OK