Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/bbmap/bbmap_38.90+dfsg-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/bbmap-38.90+dfsg-134puguso/bbmap_38.90+dfsg-1_all.buildinfo Get source package info: bbmap=38.90+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/bbmap/38.90+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-6 bsdutils=1:2.36.1-6 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20210119 ca-certificates-java=20190909 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20200708+dd9ef66-5 dctrl-tools=2.24-3+b1 debconf=1.5.74 debhelper=13.3.3 debianutils=4.11.2 default-jdk=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 devscripts=2.20.5 dh-autoreconf=20 dh-strip-nondeterminism=1.10.0-1 diffutils=1:3.7-5 dirmngr=2.2.20-1 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210126-1 fakeroot=1.25.3-1.1 file=1:5.39-3 findutils=4.8.0-1 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 gnupg=2.2.20-1 gnupg-l10n=2.2.20-1 gnupg-utils=2.2.20-1 gpg=2.2.20-1 gpg-agent=2.2.20-1 gpg-wks-client=2.2.20-1 gpg-wks-server=2.2.20-1 gpgconf=2.2.20-1 gpgsm=2.2.20-1 gpgv=2.2.20-1 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 java-common=0.72 javahelper=0.78 libacl1=2.2.53-10 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libasound2=1.2.4-1.1 libasound2-data=1.2.4-1.1 libassuan0=2.5.4-1 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libavahi-client3=0.8-4 libavahi-common-data=0.8-4 libavahi-common3=0.8-4 libb-hooks-op-check-perl=0.22-1+b3 libbinutils=2.35.1-7 libblkid1=2.36.1-6 libbrotli1=1.0.9-2+b2 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libclass-method-modifiers-perl=2.13-1 libcom-err2=1.45.7-1 libcommons-cli-java=1.4-2 libcommons-codec-java=1.15-1 libcommons-io-java=2.8.0-1 libcommons-parent-java=43-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libcups2=2.3.3op2-2 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.20-1 libdebconfclient0=0.256 libdebhelper-perl=13.3.3 libdevel-callchecker-perl=0.008-1+b2 libdpkg-perl=1.20.7.1 libdrm-amdgpu1=2.4.104-1 libdrm-common=2.4.104-1 libdrm-intel1=2.4.104-1 libdrm-nouveau2=2.4.104-1 libdrm-radeon1=2.4.104-1 libdrm2=2.4.104-1 libdynaloader-functions-perl=0.003-1.1 libedit2=3.1-20191231-2+b1 libelf1=0.182+20210203-1.1 libencode-locale-perl=1.05-1.1 libexpat1=2.2.10-1 libfakeroot=1.25.3-1.1 libffi7=3.3-5 libfile-dirlist-perl=0.05-2 libfile-homedir-perl=1.006-1 libfile-listing-perl=6.14-1 libfile-stripnondeterminism-perl=1.10.0-1 libfile-touch-perl=0.11-1 libfile-which-perl=1.23-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgif7=5.1.9-2 libgl1=1.3.2-1 libgl1-mesa-dri=20.3.4-1 libglapi-mesa=20.3.4-1 libglib2.0-0=2.66.6-1 libglvnd0=1.3.2-1 libglx-mesa0=20.3.4-1 libglx0=1.3.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-5 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-4 libharfbuzz0b=2.7.4-1 libhogweed6=3.7-2 libhtml-parser-perl=3.75-1+b1 libhtml-tagset-perl=3.20-4 libhtml-tree-perl=5.07-2 libhttp-cookies-perl=6.10-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.27-1 libhttp-negotiate-perl=6.01-1 libicu67=67.1-6 libidn2-0=2.3.0-5 libimport-into-perl=1.002005-1 libio-html-perl=1.001-1.1 libio-pty-perl=1:1.15-2 libio-socket-ssl-perl=2.069-1 libipc-run-perl=20200505.0-1 libisl23=0.23-1 libitm1=10.2.1-6 libjpeg62-turbo=1:2.0.5-2 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libksba8=1.5.0-3 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.57+dfsg-1 libllvm11=1:11.0.1-2 liblog4j1.2-java=1.2.17-9 liblsan0=10.2.1-6 liblwp-mediatypes-perl=6.04-1 liblwp-protocol-https-perl=6.10-1 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmodule-runtime-perl=0.016-1 libmoo-perl=2.004004-1 libmount1=2.36.1-6 libmpc3=1.2.0-1 libmpdec3=2.5.1-1 libmpfr6=4.1.0-3 libmpj-java=0.44+dfsg-4 libncursesw6=6.2+20201114-2 libnet-http-perl=6.20-1 libnet-ssleay-perl=1.88-3+b1 libnettle8=3.7-2 libnpth0=1.6-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.29-1 libnss3=2:3.60-1 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-4 libpam-modules-bin=1.4.0-4 libpam-runtime=1.4.0-4 libpam0g=1.4.0-4 libparams-classify-perl=0.015-1+b3 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libpcsclite1=1.9.0-1 libperl5.32=5.32.1-2 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-3 libpython3.9-stdlib=3.9.1-3 libquadmath0=10.2.1-6 libreadline8=8.1-1 librole-tiny-perl=2.002004-1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsensors-config=1:3.6.0-7 libsensors5=1:3.6.0-7 libsepol1=3.1-1 libsigsegv2=2.13-1 libsmartcols1=2.36.1-6 libsqlite3-0=3.34.1-1 libssl1.1=1.1.1i-3 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libstrictures-perl=2.000006-1 libsub-override-perl=0.09-2 libsub-quote-perl=2.006006-1 libsystemd0=247.3-1 libtasn1-6=4.16.0-2 libtimedate-perl=2.3300-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtry-tiny-perl=0.30-1 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-1 libunistring2=0.9.10-4 liburi-perl=5.07-1 libuuid1=2.36.1-6 libvulkan1=1.2.162.0-1 libwww-perl=6.52-1 libwww-robotrules-perl=6.02-1 libx11-6=2:1.7.0-2 libx11-data=2:1.7.0-2 libx11-xcb1=2:1.7.0-2 libxau6=1:1.0.9-1 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-present0=1.14-3 libxcb-shm0=1.14-3 libxcb-sync1=1.14-3 libxcb-xfixes0=1.14-3 libxcb1=1.14-3 libxdamage1=1:1.1.5-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1.1 libxfixes3=1:5.0.3-2 libxi6=2:1.7.10-1 libxml2=2.9.10+dfsg-6.3+b1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.10-1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.12-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 netbase=6.2 openjdk-11-jdk=11.0.10+9-1 openjdk-11-jdk-headless=11.0.10+9-1 openjdk-11-jre=11.0.10+9-1 openjdk-11-jre-headless=11.0.10+9-1 openssl=1.1.1i-3 passwd=1:4.8.1-1 patch=2.7.6-7 patchutils=0.4.2-1 perl=5.32.1-2 perl-base=5.32.1-2 perl-modules-5.32=5.32.1-2 perl-openssl-defaults=5 pinentry-curses=1.1.0-4 po-debconf=1.0.21+nmu1 python3=3.9.1-1 python3-minimal=3.9.1-1 python3.9=3.9.1-3 python3.9-minimal=3.9.1-3 readline-common=8.1-1 rename=1.13-1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2021a-1 ucf=3.0043 util-linux=2.36.1-6 wdiff=1.2.2-2+b1 x11-common=1:7.7+21 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210206T145410Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210205T091048Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d bbmap=38.90+dfsg-1 && mkdir -p /build/bbmap-tEvC8N && dpkg-source --no-check -x /*.dsc /build/bbmap-tEvC8N/bbmap-38.90+dfsg && chown -R builduser:builduser /build/bbmap-tEvC8N" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/bbmap-tEvC8N/bbmap-38.90+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612520348" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/bbmap-tEvC8N /tmp/bbmap-38.90+dfsg-134puguso bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210205T091048Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.DRxvkUJ419 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.DRxvkUJ419 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210205T091048Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210205T091048Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (992 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4663 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210206T145410Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210205T091048Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.DRxvkUJ419 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210206T145410Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210205T091048Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210206T145410Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210206T145410Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210206T145410Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210206T145410Z unstable/main amd64 Packages [11.7 MB] Fetched 34.4 MB in 28s (1211 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.DRxvkUJ419 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d bbmap=38.90+dfsg-1 && mkdir -p /build/bbmap-tEvC8N && dpkg-source --no-check -x /*.dsc /build/bbmap-tEvC8N/bbmap-38.90+dfsg && chown -R builduser:builduser /build/bbmap-tEvC8N"' exec /tmp/mmdebstrap.DRxvkUJ419 Reading package lists... NOTICE: 'bbmap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bbmap.git Please use: git clone https://salsa.debian.org/med-team/bbmap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4443 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main bbmap 38.90+dfsg-1 (dsc) [2055 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main bbmap 38.90+dfsg-1 (tar) [4418 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main bbmap 38.90+dfsg-1 (diff) [22.9 kB] Fetched 4443 kB in 4s (1265 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'bbmap_38.90+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting bbmap in /build/bbmap-tEvC8N/bbmap-38.90+dfsg dpkg-source: info: unpacking bbmap_38.90+dfsg.orig.tar.xz dpkg-source: info: unpacking bbmap_38.90+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debug_symbols.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/bbmap-tEvC8N/bbmap-38.90+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612520348" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.DRxvkUJ419 dpkg-buildpackage: info: source package bbmap dpkg-buildpackage: info: source version 38.90+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . debian/rules clean dh clean --with javahelper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' # do nothing make[1]: Leaving directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' jh_clean debian/rules override_dh_clean make[1]: Entering directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' dh_clean find . -name "*.class" -delete find . -name "*.so" -delete make[1]: Leaving directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' debian/rules binary-indep dh binary-indep --with javahelper dh_update_autotools_config -i dh_autoreconf -i dh_auto_configure -i jh_linkjars -i debian/rules override_dh_auto_build make[1]: Entering directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' cd jni && make -f makefile.linux make[2]: Entering directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg/jni' gcc -g -O2 -ffile-prefix-map=/build/bbmap-tEvC8N/bbmap-38.90+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -std=c99 -fPIC -I"/usr/lib/jvm/default-java/include" -I"/usr/lib/jvm/default-java/include/linux" -c -o BandedAlignerJNI.o BandedAlignerJNI.c gcc -g -O2 -ffile-prefix-map=/build/bbmap-tEvC8N/bbmap-38.90+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -std=c99 -fPIC -I"/usr/lib/jvm/default-java/include" -I"/usr/lib/jvm/default-java/include/linux" -c -o MultiStateAligner11tsJNI.o MultiStateAligner11tsJNI.c MultiStateAligner11tsJNI.c: In function ‘fillUnlimited’: MultiStateAligner11tsJNI.c:198:13: warning: variable ‘prevState’ set but not used [-Wunused-but-set-variable] 198 | jbyte prevState; | ^~~~~~~~~ MultiStateAligner11tsJNI.c:245:11: warning: variable ‘prevState’ set but not used [-Wunused-but-set-variable] 245 | jbyte prevState; | ^~~~~~~~~ MultiStateAligner11tsJNI.c:275:11: warning: variable ‘prevState’ set but not used [-Wunused-but-set-variable] 275 | jbyte prevState; | ^~~~~~~~~ MultiStateAligner11tsJNI.c: In function ‘fillLimitedX’: MultiStateAligner11tsJNI.c:498:12: warning: variable ‘prevState’ set but not used [-Wunused-but-set-variable] 498 | jbyte prevState; | ^~~~~~~~~ MultiStateAligner11tsJNI.c:588:11: warning: variable ‘prevState’ set but not used [-Wunused-but-set-variable] 588 | jbyte prevState; | ^~~~~~~~~ MultiStateAligner11tsJNI.c:629:11: warning: variable ‘prevState’ set but not used [-Wunused-but-set-variable] 629 | jbyte prevState; | ^~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/bbmap-tEvC8N/bbmap-38.90+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -std=c99 -fPIC -I"/usr/lib/jvm/default-java/include" -I"/usr/lib/jvm/default-java/include/linux" -c -o BBMergeOverlapper.o BBMergeOverlapper.c BBMergeOverlapper.c: In function ‘findBestRatio’: BBMergeOverlapper.c:123:13: warning: unused variable ‘maxOverlap’ [-Wunused-variable] 123 | const jint maxOverlap=alen+blen-max(minOverlap, minInsert); | ^~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/bbmap-tEvC8N/bbmap-38.90+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -std=c99 -fPIC -I"/usr/lib/jvm/default-java/include" -I"/usr/lib/jvm/default-java/include/linux" -c -o IceCreamAlignerJNI.o IceCreamAlignerJNI.c gcc -o libbbtoolsjni.so BandedAlignerJNI.o MultiStateAligner11tsJNI.o BBMergeOverlapper.o IceCreamAlignerJNI.o -Wl,-z,relro -O3 -Wall -std=c99 -fPIC -shared make[2]: Leaving directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg/jni' JH_JAR_EXTRA=`/build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/*` jh_build bbmap.jar current /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 2: AAGTCGTAACAAGGTA: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 4: CGACCTCGATGTTGGA: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 6: TATATATATATATATA: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 8: TGCCAGCAGCCGCGGT: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 10: ATCGAATTAAACCACA: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 12: CCTTGCACACACCGCC: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 14: GACCTCGATGTTGAAT: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 16: CTGTTTACCAAAAACA: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 18: AGGAATTACTAGTAAT: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 20: GGGCAGGCATCACCTT: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 22: TGGGCTATAGACGTGC: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 24: AACTAACCAGAGTCTC: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 26: TAGGGTTCACATAAGA: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 28: TCCCCTGCCTCCCCGC: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 30: GAGGGGGCCGCCCGGC: not found /build/bbmap-tEvC8N/bbmap-38.90+dfsg/resources/16S_15mers.fa: 32: CCAAGATTTTGATCAG: not found warning: [options] bootstrap class path not set in conjunction with -source 7 Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 1 warning Creating destination directory: "debian/_jh_build.javadoc/api/" current/align2/AbstractMapThread.java:2218: warning - invalid usage of tag < current/align2/AbstractMapThread.java:2278: warning - invalid usage of tag < current/align2/QualityTools.java:431: warning - invalid usage of tag > current/align2/QualityTools.java:431: warning - invalid usage of tag > current/aligner/FlatAligner.java:12: warning - @param argument "qstart" is not a parameter name. current/aligner/FlatAligner.java:128: warning - @param argument "qstart" is not a parameter name. current/aligner/FlatAligner.java:131: warning - @param argument "minScore" is not a parameter name. current/aligner/FlatAligner2.java:12: warning - @param argument "qstart" is not a parameter name. current/aligner/FlatAligner2.java:128: warning - @param argument "qstart" is not a parameter name. current/aligner/FlatAligner2.java:131: warning - @param argument "minScore" is not a parameter name. current/cardinality/CardinalityTracker.java:268: warning - invalid usage of tag > current/cardinality/CardinalityTracker.java:206: warning - invalid usage of tag < current/cardinality/CardinalityTracker.java:206: warning - invalid usage of tag < current/cardinality/CardinalityTracker.java:124: warning - invalid usage of tag > current/cardinality/CardinalityTracker.java:124: warning - invalid usage of tag > current/cardinality/CardinalityTracker.java:206: warning - invalid usage of tag < current/cardinality/CardinalityTracker.java:206: warning - invalid usage of tag < current/cardinality/CardinalityTracker.java:268: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/icecream/IceCreamAligner.java:22: warning - @param argument "qstart" is not a parameter name. current/icecream/IceCreamAligner.java:35: warning - @param argument "qstart" is not a parameter name. current/icecream/IceCreamAlignerJava.java:110: warning - @param argument "qstart" is not a parameter name. current/icecream/IceCreamAlignerJNI.java:18: warning - @param argument "qstart" is not a parameter name. current/icecream/IceCreamAlignerJNI.java:73: warning - @param argument "qstart" is not a parameter name. current/jasper/NCBISparseTree.java:186: warning - @param argument "nodeName" is not a parameter name. current/jasper/NCBISparseTree.java:204: warning - @param argument "orgName" is not a parameter name. current/jasper/NCBITreeNode.java:87: warning - invalid usage of tag < current/jasper/NCBITreeNode.java:87: warning - invalid usage of tag > current/jasper/NCBITreeNode.java:41: warning - @param argument "kid" is not a parameter name. current/jasper/NCBITreeNode.java:87: warning - invalid usage of tag < current/jasper/NCBITreeNode.java:87: warning - invalid usage of tag > current/jasper/TreeNode.java:83: warning - invalid usage of tag < current/jasper/TreeNode.java:83: warning - invalid usage of tag > current/jasper/TreeNode.java:37: warning - @param argument "kid" is not a parameter name. current/jasper/TreeNode.java:83: warning - invalid usage of tag < current/jasper/TreeNode.java:83: warning - invalid usage of tag > current/jgi/BBDuk.java:55: warning - invalid usage of tag > current/kmer/TableReader.java:546: warning - invalid usage of tag > current/kmer/TableReader.java:546: warning - invalid usage of tag > current/shared/PreParser.java:27: warning - @param argument "args" is not a parameter name. current/shared/PreParser.java:37: warning - @param argument "args" is not a parameter name. current/structures/EntropyTracker.java:43: warning - @param argument "k_" is not a parameter name. current/structures/EntropyTracker.java:44: warning - @param argument "window_" is not a parameter name. current/structures/EntropyTracker.java:367: warning - @param argument "maxMonomer" is not a parameter name. current/structures/IntList2.java:9: warning - invalid usage of tag < current/structures/IntList2.java:9: warning - invalid usage of tag > current/tax/TaxTree.java:2140: warning - invalid usage of tag > current/tax/TaxTree.java:2466: warning - invalid usage of tag > current/structures/IntList2.java:9: warning - invalid usage of tag < current/structures/IntList2.java:9: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/dna/AminoAcid.java:223: warning - invalid usage of tag > current/cardinality/CardinalityTracker.java:268: warning - invalid usage of tag > current/cardinality/CardinalityTracker.java:206: warning - invalid usage of tag < current/cardinality/CardinalityTracker.java:206: warning - invalid usage of tag < current/structures/IntList2.java:9: warning - invalid usage of tag < current/structures/IntList2.java:9: warning - invalid usage of tag > current/cardinality/CardinalityTracker.java:124: warning - invalid usage of tag > current/align2/QualityTools.java:431: warning - invalid usage of tag > current/jasper/NCBITreeNode.java:87: warning - invalid usage of tag < current/jasper/NCBITreeNode.java:87: warning - invalid usage of tag > current/jasper/TreeNode.java:83: warning - invalid usage of tag < current/jasper/TreeNode.java:83: warning - invalid usage of tag > current/structures/IntList2.java:9: warning - invalid usage of tag < current/structures/IntList2.java:9: warning - invalid usage of tag > 77 warnings make[1]: Leaving directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' dh_auto_test -i create-stamp debian/debhelper-build-stamp dh_prep -i dh_auto_install -i debian/rules override_dh_install make[1]: Entering directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' dh_install mkdir -p debian/bbmap/usr/share/bbmap cp -a calcmem.sh debian/bbmap/usr/share/bbmap for scr in *.sh ; do \ if [ "${scr}" != "calcmem.sh" ] ; then \ sed -e 's:^CP=".DIR""current/":CP=/usr/share/java/bbmap.jar:' \ -e 's:source ".DIR""/calcmem.sh":source "/usr/share/bbmap/calcmem.sh":' \ ${scr} > debian/bbmap/usr/share/bbmap/${scr} ; \ fi ; \ done make[1]: Leaving directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' jh_installjavadoc -i debian/rules override_dh_installdocs make[1]: Entering directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' dh_installdocs find debian -name compiling.txt -delete find debian -name git.txt -delete find debian -name "Legal*.txt" -delete make[1]: Leaving directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' dh_installchangelogs -i debian/rules override_dh_installman make[1]: Entering directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' dh_installman --language=C make[1]: Leaving directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' dh_perl -i dh_link -i jh_installlibs -i jh_classpath -i jh_manifest -i jh_exec -i jh_depends -i dh_strip_nondeterminism -i dh_compress -i debian/rules override_dh_fixperms make[1]: Entering directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' dh_fixperms chmod +x debian/bbmap/usr/share/bbmap/* make[1]: Leaving directory '/build/bbmap-tEvC8N/bbmap-38.90+dfsg' dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'bbmap' in '../bbmap_38.90+dfsg-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../bbmap_38.90+dfsg-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/bbmap-tEvC8N /tmp/bbmap-38.90+dfsg-134puguso I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_builduser W: deleting files in /tmp: hsperfdata_root I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.DRxvkUJ419... I: success in 897.8659 seconds md5: bbmap_38.90+dfsg-1_all.deb: OK sha1: bbmap_38.90+dfsg-1_all.deb: OK sha256: bbmap_38.90+dfsg-1_all.deb: OK Checksums: OK