Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/barclay/barclay_2.1.0-3.1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/barclay-2.1.0-3.1ihaa1u4t/barclay_2.1.0-3.1_all.buildinfo Get source package info: barclay=2.1.0-3.1 Source URL: http://snapshot.notset.fr/mr/package/barclay/2.1.0-3.1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 ant=1.10.9-1 ant-optional=1.10.9-1 antlr=2.7.7+dfsg-10 autoconf=2.69-14 automake=1:1.16.3-1 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-1 binutils=2.35.1-6 binutils-common=2.35.1-6 binutils-x86-64-linux-gnu=2.35.1-6 bnd=5.0.1-2 bsdextrautils=2.36.1-4 bsdutils=1:2.36.1-4 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 ca-certificates-java=20190909 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.1-3 dash=0.5.11+git20200708+dd9ef66-5 dctrl-tools=2.24-3+b1 debconf=1.5.74 debhelper=13.3.1 debianutils=4.11.2 default-jdk=2:1.11-72 default-jdk-doc=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 devscripts=2.20.5 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dirmngr=2.2.20-1 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 fakeroot=1.25.3-1.1 file=1:5.39-3 findutils=4.7.0+git20201010-2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.0-1 g++-10=10.2.1-3 gcc=4:10.2.0-1 gcc-10=10.2.1-3 gcc-10-base=10.2.1-3 gettext=0.21-3 gettext-base=0.21-3 gnupg=2.2.20-1 gnupg-l10n=2.2.20-1 gnupg-utils=2.2.20-1 gpg=2.2.20-1 gpg-agent=2.2.20-1 gpg-wks-client=2.2.20-1 gpg-wks-server=2.2.20-1 gpgconf=2.2.20-1 gpgsm=2.2.20-1 gpgv=2.2.20-1 gradle=4.4.1-12 gradle-debian-helper=2.1 grep=3.6-1 groff-base=1.22.4-5 groovy=2.4.21-1 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 ivy=2.4.0-5 java-common=0.72 java-wrappers=0.3 javahelper=0.77 junit4=4.13.1-1 libacl1=2.2.53-9 libantlr-java=2.7.7+dfsg-10 libaopalliance-java=20070526-6 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libasan6=10.2.1-3 libasm-java=9.0-1 libasound2=1.2.4-1 libasound2-data=1.2.4-1 libassuan0=2.5.3-7.1 libatinject-jsr330-api-java=1.0+ds1-5 libatomic1=10.2.1-3 libattr1=1:2.4.48-6 libaudit-common=1:3.0-1 libaudit1=1:3.0-1 libavahi-client3=0.8-3 libavahi-common-data=0.8-3 libavahi-common3=0.8-3 libb-hooks-op-check-perl=0.22-1+b3 libbcel-java=6.5.0-1 libbcpg-java=1.65-1 libbcprov-java=1.65-1 libbinutils=2.35.1-6 libblkid1=2.36.1-4 libbrotli1=1.0.9-2+b2 libbsd0=0.10.0-1 libbsf-java=1:2.4.0-8 libbsh-java=2.0b4-20 libbyte-buddy-java=1.8.2-2 libbz2-1.0=1.0.8-4 libc-bin=2.31-6 libc-dev-bin=2.31-6 libc6=2.31-6 libc6-dev=2.31-6 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-3 libcdi-api-java=1.2-2 libclass-method-modifiers-perl=2.13-1 libcom-err2=1.45.6-1 libcommons-cli-java=1.4-2 libcommons-codec-java=1.14-1 libcommons-collections3-java=3.2.2-2 libcommons-compress-java=1.20-1 libcommons-io-java=2.8.0-1 libcommons-lang-java=2.6-9 libcommons-lang3-java=3.11-1 libcommons-logging-java=1.2-2 libcommons-parent-java=43-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-6 libctf0=2.35.1-6 libcups2=2.3.3op1-4 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.20-1 libdd-plist-java=1.20-1.1 libdebconfclient0=0.255 libdebhelper-perl=13.3.1 libdevel-callchecker-perl=0.008-1+b2 libdom4j-java=2.1.3-1 libdpkg-perl=1.20.5 libdrm-amdgpu1=2.4.103-2 libdrm-common=2.4.103-2 libdrm-intel1=2.4.103-2 libdrm-nouveau2=2.4.103-2 libdrm-radeon1=2.4.103-2 libdrm2=2.4.103-2 libdynaloader-functions-perl=0.003-1.1 libedit2=3.1-20191231-2+b1 libel-api-java=3.0.0-3 libelf1=0.182-2 libencode-locale-perl=1.05-1.1 libexpat1=2.2.10-1 libfakeroot=1.25.3-1.1 libfelix-framework-java=4.6.1-2.1 libfelix-gogo-runtime-java=0.16.2-1.1 libfelix-resolver-java=1.16.0-1 libffi7=3.3-5 libfile-dirlist-perl=0.05-2 libfile-homedir-perl=1.006-1 libfile-listing-perl=6.14-1 libfile-stripnondeterminism-perl=1.9.0-1 libfile-touch-perl=0.11-1 libfile-which-perl=1.23-1 libfindbugs-java=3.1.0~preview2-3 libfontconfig1=2.13.1-4.2 libfreemarker-java=2.3.23-9 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.2.1-3 libgcc-s1=10.2.1-3 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgeronimo-annotation-1.3-spec-java=1.0-1.1 libgeronimo-interceptor-3.0-spec-java=1.0.1-4 libgif7=5.1.9-1 libgl1=1.3.2-1 libgl1-mesa-dri=20.2.6-1 libglapi-mesa=20.2.6-1 libglib2.0-0=2.66.4-1 libglvnd0=1.3.2-1 libglx-mesa0=20.2.6-1 libglx0=1.3.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-3 libgomp1=10.2.1-3 libgoogle-gson-java=2.8.6-1 libgpg-error0=1.38-2 libgradle-core-java=4.4.1-12 libgradle-plugins-java=4.4.1-12 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-4 libguava-java=29.0-6 libguice-java=4.2.3-1 libhamcrest-java=1.3-9 libharfbuzz0b=2.6.7-1 libhawtjni-runtime-java=1.17-1 libhogweed6=3.6-2 libhtml-parser-perl=3.75-1+b1 libhtml-tagset-perl=3.20-4 libhtml-tree-perl=5.07-2 libhttp-cookies-perl=6.09-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.26-1 libhttp-negotiate-perl=6.01-1 libhttpclient-java=4.5.13-1 libhttpcore-java=4.4.13-1 libicu67=67.1-5 libidn2-0=2.3.0-4 libimport-into-perl=1.002005-1 libio-html-perl=1.001-1.1 libio-pty-perl=1:1.15-2 libio-socket-ssl-perl=2.068-1 libipc-run-perl=20200505.0-1 libisl23=0.23-1 libitm1=10.2.1-3 libjacoco-java=0.8.3-1 libjansi-java=1.18-1 libjansi-native-java=1.8-1 libjarjar-java=1.4+svn142-10 libjatl-java=0.2.3-1.1 libjavaewah-java=0.7.9-1 libjaxen-java=1.1.6-4 libjcifs-java=1.3.19-2 libjcip-annotations-java=20060626-5.1 libjcommander-java=1.71-3 libjformatstring-java=0.10~20131207-2.1 libjgit-java=3.7.1-6 libjline2-java=2.14.6-4 libjna-java=5.5.0-1.1 libjna-jni=5.5.0-1.1 libjoptsimple-java=5.0.4-4 libjpeg62-turbo=1:2.0.5-2 libjs-jquery=3.5.1+dfsg+~3.5.5-4 libjsch-java=0.1.55-1 libjsoup-java=1.10.2-2 libjsp-api-java=2.3.4-3 libjsr305-java=0.1~+svn49-11 libjzlib-java=1.1.3-2 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libkryo-java=2.20-6.2 libksba8=1.5.0-3 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.56+dfsg-1 liblightcouch-java=0.0.6-1.1 libllvm11=1:11.0.1~+rc2-1 liblog4j2-java=2.11.2-1 liblogback-java=1:1.2.3-5 liblsan0=10.2.1-3 liblwp-mediatypes-perl=6.04-1 liblwp-protocol-https-perl=6.10-1 liblz4-1=1.9.3-1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmaven-parent-java=31-2 libmaven-resolver-java=1.4.2-1 libmaven-shared-utils-java=3.3.0-1 libmaven3-core-java=3.6.3-1 libminlog-java=1.3.0-1.1 libmockito-java=2.23.0-1 libmodule-runtime-perl=0.016-1 libmongodb-java=3.6.3-2 libmoo-perl=2.004004-1 libmount1=2.36.1-4 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libnative-platform-java=0.14-5 libnative-platform-jni=0.14-5 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnekohtml-java=1.9.22-1.1 libnet-http-perl=6.19-1 libnet-ssleay-perl=1.88-3+b1 libnettle8=3.6-2 libnpth0=1.6-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.29-1 libnss3=2:3.60-1 libobjenesis-java=3.1-1 libosgi-annotation-java=7.0.0-2 libosgi-compendium-java=7.0.0-1 libosgi-core-java=7.0.0-2 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libparams-classify-perl=0.015-1+b3 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libpcsclite1=1.9.0-1 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libplexus-cipher-java=1.7-3 libplexus-classworlds-java=2.6.0-1 libplexus-component-annotations-java=2.1.0-1 libplexus-container-default-java=2.1.0-1 libplexus-container-default1.5-java=2.1.0-1 libplexus-interpolation-java=1.26-1 libplexus-sec-dispatcher-java=1.4-4 libplexus-utils2-java=3.3.0-1 libpng16-16=1.6.37-3 libpolyglot-maven-java=0.8~tobrien+git20120905-10 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-1 libpython3.9-stdlib=3.9.1-1 libqdox-java=1.12.1-3 libquadmath0=10.2.1-3 libreadline8=8.1-1 libreflectasm-java=1.05-4.1 librhino-java=1.7.7.2-1 librole-tiny-perl=2.001004-1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsensors-config=1:3.6.0-2 libsensors5=1:3.6.0-2 libsepol1=3.1-1 libservlet-api-java=4.0.1-2 libservlet3.1-java=1:4.0.1-2 libsigsegv2=2.12-3 libsimple-http-java=4.1.21-1.1 libsisu-inject-java=0.3.3-1 libsisu-plexus-java=0.3.3-3 libslf4j-java=1.7.25-3 libsmartcols1=2.36.1-4 libsqlite3-0=3.34.0-1 libssl1.1=1.1.1i-1 libstdc++-10-dev=10.2.1-3 libstdc++6=10.2.1-3 libstrictures-perl=2.000006-1 libsub-override-perl=0.09-2 libsub-quote-perl=2.006006-1 libsystemd0=247.2-3 libtasn1-6=4.16.0-2 libtimedate-perl=2.3300-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtry-tiny-perl=0.30-1 libtsan0=10.2.1-3 libubsan1=10.2.1-3 libuchardet0=0.0.7-1 libudev1=247.2-3 libunistring2=0.9.10-4 liburi-perl=5.05-1 libuuid1=2.36.1-4 libvulkan1=1.2.154.1-1 libwagon-file-java=3.3.4-1 libwagon-http-java=3.3.4-1 libwagon-provider-api-java=3.3.4-1 libwebsocket-api-java=1.1-2 libwww-perl=6.51-1 libwww-robotrules-perl=6.02-1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libx11-xcb1=2:1.6.12-1 libxau6=1:1.0.8-1+b2 libxbean-reflect-java=4.5-8 libxcb-dri2-0=1.14-2.1 libxcb-dri3-0=1.14-2.1 libxcb-glx0=1.14-2.1 libxcb-present0=1.14-2.1 libxcb-sync1=1.14-2.1 libxcb-xfixes0=1.14-2.1 libxcb1=1.14-2.1 libxdamage1=1:1.1.5-2 libxdmcp6=1:1.1.2-3 libxerces2-java=2.12.1-1 libxext6=2:1.3.3-1.1 libxfixes3=1:5.0.3-2 libxi6=2:1.7.10-1 libxml-commons-external-java=1.4.01-5 libxml-commons-resolver1.1-java=1.2-11 libxml2=2.9.10+dfsg-6.3+b1 libxpp3-java=1.1.4c-3 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxstream-java=1.4.15-1 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libxz-java=1.8-2 libyaml-snake-java=1.27+ds-1 libz3-4=4.8.9-1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.9.15-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 maven-repo-helper=1.9.4 mawk=1.3.4.20200120-2 media-types=1.1.0 mime-support=3.66 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 netbase=6.2 openjdk-11-doc=11.0.10+8-1 openjdk-11-jdk=11.0.10+8-1 openjdk-11-jdk-headless=11.0.10+8-1 openjdk-11-jre=11.0.10+8-1 openjdk-11-jre-headless=11.0.10+8-1 openssl=1.1.1i-1 passwd=1:4.8.1-1 patch=2.7.6-6 patchutils=0.4.2-1 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 perl-openssl-defaults=5 pinentry-curses=1.1.0-4 po-debconf=1.0.21+nmu1 python3=3.9.1-1 python3-minimal=3.9.1-1 python3.9=3.9.1-1 python3.9-minimal=3.9.1-1 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 testng=6.9.12-4 tzdata=2020e-1 ucf=3.0043 unzip=6.0-25 util-linux=2.36.1-4 wdiff=1.2.2-2+b1 x11-common=1:7.7+21 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210106T142920Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201230T203527Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d barclay=2.1.0-3.1 && mkdir -p /build/barclay-aFzE4C && dpkg-source --no-check -x /*.dsc /build/barclay-aFzE4C/barclay-2.1.0 && chown -R builduser:builduser /build/barclay-aFzE4C" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/barclay-aFzE4C/barclay-2.1.0 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609685228" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/barclay-aFzE4C /tmp/barclay-2.1.0-3.1ihaa1u4t bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.WgFmsD3ajH as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.WgFmsD3ajH Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1095 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4648 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-6) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210106T142920Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201230T203527Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.WgFmsD3ajH Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20201230T203527Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210106T142920Z unstable/main amd64 Packages [11.6 MB] Fetched 34.3 MB in 29s (1191 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.WgFmsD3ajH I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d barclay=2.1.0-3.1 && mkdir -p /build/barclay-aFzE4C && dpkg-source --no-check -x /*.dsc /build/barclay-aFzE4C/barclay-2.1.0 && chown -R builduser:builduser /build/barclay-aFzE4C"' exec /tmp/mmdebstrap.WgFmsD3ajH Reading package lists... NOTICE: 'barclay' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/java-team/barclay.git Please use: git clone https://salsa.debian.org/java-team/barclay.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 150 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main barclay 2.1.0-3.1 (dsc) [2139 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main barclay 2.1.0-3.1 (tar) [141 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main barclay 2.1.0-3.1 (diff) [6744 B] Fetched 150 kB in 0s (397 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'barclay_2.1.0-3.1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting barclay in /build/barclay-aFzE4C/barclay-2.1.0 dpkg-source: info: unpacking barclay_2.1.0.orig.tar.xz dpkg-source: info: unpacking barclay_2.1.0-3.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_debian_build.patch dpkg-source: info: applying fix_deprecation.patch dpkg-source: info: applying fix_dataprovider.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/barclay-aFzE4C/barclay-2.1.0 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1609685228" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.WgFmsD3ajH dpkg-buildpackage: info: source package barclay dpkg-buildpackage: info: source version 2.1.0-3.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Holger Levsen dpkg-source --before-build . fakeroot debian/rules clean dh clean --buildsystem=gradle --with javahelper,jh_maven_repo_helper dh_auto_clean -O--buildsystem=gradle sh -c "find . -wholename .*build/tmp | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" sh -c "find . -wholename .*build/debian | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" rm -Rf /build/barclay-aFzE4C/barclay-2.1.0/.gradle /build/barclay-aFzE4C/barclay-2.1.0/buildSrc/.gradle .m2 dh_autoreconf_clean -O--buildsystem=gradle jh_clean -O--buildsystem=gradle rm -fr debian/_jh_manifest* debian/_jh_build* rm -fr debian/.eclipse-build rm -f debian/orbitdeps.debhelper mh_clean -O--buildsystem=gradle debian/rules override_dh_clean make[1]: Entering directory '/build/barclay-aFzE4C/barclay-2.1.0' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libbarclay-java.substvars debian/files rm -fr -- debian/libbarclay-java/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f debian/bd-temp-substvars rm -f debian/bd.substvars make[1]: Leaving directory '/build/barclay-aFzE4C/barclay-2.1.0' debian/rules build-indep dh build-indep --buildsystem=gradle --with javahelper,jh_maven_repo_helper dh_update_autotools_config -i -O--buildsystem=gradle dh_autoreconf -i -O--buildsystem=gradle dh_auto_configure -i -O--buildsystem=gradle jh_linkjars -i -O--buildsystem=gradle debian/rules override_dh_auto_build make[1]: Entering directory '/build/barclay-aFzE4C/barclay-2.1.0' dh_auto_build -- jar mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=4 jar Initialized native services in: /build/barclay-aFzE4C/barclay-2.1.0/.gradle/native Using 4 worker leases. Creating new cache for fileHashes, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@59d2103b Creating new cache for resourceHashesCache, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@59d2103b Creating new cache for fileHashes, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@681aad3b WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access using Lookup on org.gradle.internal.reflect.JavaMethod (file:/usr/share/gradle/lib/gradle-base-services-4.4.1.jar) to class java.lang.ClassLoader WARNING: Please consider reporting this to the maintainers of org.gradle.internal.reflect.JavaMethod WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release Starting Build Compiling initialization script '/build/barclay-aFzE4C/barclay-2.1.0/.gradle/init.d/init.gradle' using SubsetScriptTransformer. Creating new cache for metadata-1.1/results, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@4694f434 Compiling initialization script '/build/barclay-aFzE4C/barclay-2.1.0/.gradle/init.d/init.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/barclay-aFzE4C/barclay-2.1.0/settings.gradle'. Settings file not found (/build/barclay-aFzE4C/barclay-2.1.0/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'barclay' instead of the name of the root directory 'barclay-2.1.0' Projects loaded. Root project using build file '/build/barclay-aFzE4C/barclay-2.1.0/build.gradle'. Included projects: [root project 'barclay'] Keep-alive timer started Adding Debian repository to project 'barclay' Parallel execution is an incubating feature. Evaluating root project 'barclay' using build file '/build/barclay-aFzE4C/barclay-2.1.0/build.gradle'. Compiling build file '/build/barclay-aFzE4C/barclay-2.1.0/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/barclay-aFzE4C/barclay-2.1.0/build.gradle' using BuildScriptTransformer. Starting process 'command 'dpkg-parsechangelog''. Working directory: /build/barclay-aFzE4C/barclay-2.1.0 Command: dpkg-parsechangelog -S Version Successfully started process 'command 'dpkg-parsechangelog'' Adding Maven pom generation to project 'barclay' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : Creating new cache for annotation-processors, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@69944a90 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] Creating new cache for resourceHashesCache, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@681aad3b Creating new cache for taskHistory, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@7845ee8a Creating new cache for outputFiles, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@637506d8 :compileJava (Thread[main,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.081 secs. Creating new cache for metadata-2.36/module-metadata, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@2651e783 Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing org.apache.commons:commons-lang3:jar:3.4 -> org.apache.commons:commons-lang3:jar:debian Passing through org.apache.commons:commons-parent:jar:debian Passing through org.apache:apache:jar:debian Replacing org.apache.logging.log4j:log4j-api:jar:2.3 -> org.apache.logging.log4j:log4j-api:jar:debian Passing through org.apache.logging.log4j:log4j:jar:debian Replacing org.apache.logging.log4j:log4j-core:jar:2.3 -> org.apache.logging.log4j:log4j-core:jar:debian Replacing org.freemarker:freemarker:jar:2.3.23 -> org.freemarker:freemarker:jar:debian Replacing com.google.code.gson:gson:jar:2.2.2 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian Up-to-date check for task ':compileJava' took 14.799 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/utils/Utils.java:3: warning: [deprecation] WordUtils in org.apache.commons.lang3.text has been deprecated import org.apache.commons.lang3.text.WordUtils; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/BashTabCompletionDoclet.java:3: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.RootDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:5: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:6: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.RootDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocWorkUnit.java:3: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:3: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.FieldDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:4: warning: [removal] PackageDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.PackageDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:5: warning: [removal] ProgramElementDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ProgramElementDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:3: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:4: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.FieldDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/utils/Utils.java:162: warning: [deprecation] WordUtils in org.apache.commons.lang3.text has been deprecated .map(line -> WordUtils.wrap(line, width)) ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:94: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal private RootDoc rootDoc; // The javadoc root doc ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:105: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal public static boolean start(final RootDoc rootDoc) throws IOException { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:139: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal protected boolean startProcessDocs(final RootDoc rootDoc) throws IOException { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:256: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal private void processDocs(final RootDoc rootDoc) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:294: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal for (final ClassDoc classDoc : rootDoc.classes()) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:316: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal public RootDoc getRootDoc() { return rootDoc; } ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:361: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal public boolean includeInDocs(final DocumentedFeature documentedFeature, final ClassDoc classDoc, final Class clazz) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:412: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc classDoc, ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:443: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal private Class getClassForClassDoc(final ClassDoc doc) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/HelpDoclet.java:570: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal public ClassDoc getClassDocForClass(final Class clazz) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/BashTabCompletionDoclet.java:257: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal public static boolean start(RootDoc rootDoc) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocWorkUnit.java:25: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal private final ClassDoc classDoc; // javadoc documentation for clazz ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocWorkUnit.java:50: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc classDoc, ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocWorkUnit.java:112: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal public ClassDoc getClassDoc() { return classDoc; } ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocWorkUnit.java:187: warning: [deprecation] newInstance() in Class has been deprecated return commandLineProperties.programGroup().newInstance(); ^ where T is a type-variable: T extends Object declared in class Class /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:16: warning: [removal] ProgramElementDoc in com.sun.javadoc has been deprecated and marked for removal protected static Class getClassForDoc(ProgramElementDoc doc) throws ClassNotFoundException { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:20: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal protected static Field getFieldForFieldDoc(FieldDoc fieldDoc) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:35: warning: [removal] ProgramElementDoc in com.sun.javadoc has been deprecated and marked for removal protected static String getClassName(ProgramElementDoc doc, boolean binaryName) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DocletUtils.java:36: warning: [removal] PackageDoc in com.sun.javadoc has been deprecated and marked for removal PackageDoc containingPackage = doc.containingPackage(); ^ warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:195: warning: [deprecation] newInstance() in Class has been deprecated final Object argumentContainer = workUnit.getClazz().newInstance(); ^ where T is a type-variable: T extends Object declared in class Class warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:378: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal FieldDoc fieldDoc = getFieldDocForCommandLineArgument(currentWorkUnit, argDef); ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:423: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal private FieldDoc getFieldDocForCommandLineArgument( ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:429: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc declaringClassDoc = getDoclet().getRootDoc().classNamed(declaringClassTypeName); ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:439: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal final FieldDoc fieldDoc = getFieldDoc(declaringClassDoc, argDef.field.getName()); ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:645: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal private FieldDoc getFieldDoc(final ClassDoc classDoc, final String argumentFieldName) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:645: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal private FieldDoc getFieldDoc(final ClassDoc classDoc, final String argumentFieldName) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:646: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal for (final FieldDoc fieldDoc : classDoc.fields(false)) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:662: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc typeDoc = getDoclet().getRootDoc().classNamed(fieldDoc.type().qualifiedTypeName()); ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:667: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal FieldDoc result = getFieldDoc(typeDoc, argumentFieldName); ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:746: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal protected Map docForArgument(final FieldDoc fieldDoc, final CommandLineArgumentParser.ArgumentDefinition def) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:800: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc doc = this.getDoclet().getClassDocForClass(enumClass); ^ /build/barclay-aFzE4C/barclay-2.1.0/src/main/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandler.java:807: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal for (final FieldDoc fieldDoc : doc.fields(false)) { ^ 48 warnings :compileJava (Thread[main,5,main]) completed. Took 54.89 secs. :processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. Up-to-date check for task ':processResources' took 0.094 secs. It is not up-to-date because: No history is available. :processResources (Thread[Task worker for ':',5,main]) completed. Took 1.095 secs. :classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes (Thread[Task worker for ':',5,main]) completed. Took 0.003 secs. :debianMavenPom (Thread[Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.026 secs. It is not up-to-date because: No history is available. Generating pom file /build/barclay-aFzE4C/barclay-2.1.0/build/debian/barclay.pom :debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.997 secs. :jar (Thread[Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.112 secs. It is not up-to-date because: No history is available. :jar (Thread[Task worker for ':',5,main]) completed. Took 0.388 secs. BUILD SUCCESSFUL in 1m 51s 4 actionable tasks: 4 executed make[1]: Leaving directory '/build/barclay-aFzE4C/barclay-2.1.0' jh_build -i -O--buildsystem=gradle rm -f debian/libbarclay-java.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/barclay-aFzE4C/barclay-2.1.0' # Tests do not work with locales with a different decimal separator # (for example ',') env LC_ALL=C \ dh_auto_build -- test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=4 test Initialized native services in: /build/barclay-aFzE4C/barclay-2.1.0/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/barclay-aFzE4C/barclay-2.1.0/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-11-openjdk-amd64/bin/java -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 4.834 secs. The client will now receive all logging from the daemon (pid: 4042851). The daemon log file: /build/barclay-aFzE4C/barclay-2.1.0/.gradle/daemon/4.4.1/daemon-4042851.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 4 worker leases. Creating new cache for fileHashes, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@67cd778f Creating new cache for resourceHashesCache, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@67cd778f Creating new cache for fileHashes, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2004d553 Starting Build Creating new cache for metadata-1.1/results, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@27e99ab3 Settings evaluated using settings file '/build/barclay-aFzE4C/barclay-2.1.0/settings.gradle'. Settings file not found (/build/barclay-aFzE4C/barclay-2.1.0/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'barclay' instead of the name of the root directory 'barclay-2.1.0' Projects loaded. Root project using build file '/build/barclay-aFzE4C/barclay-2.1.0/build.gradle'. Included projects: [root project 'barclay'] Keep-alive timer started Adding Debian repository to project 'barclay' Parallel execution is an incubating feature. Evaluating root project 'barclay' using build file '/build/barclay-aFzE4C/barclay-2.1.0/build.gradle'. Starting process 'command 'dpkg-parsechangelog''. Working directory: /build/barclay-aFzE4C/barclay-2.1.0 Command: dpkg-parsechangelog -S Version Successfully started process 'command 'dpkg-parsechangelog'' Adding Maven pom generation to project 'barclay' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : Creating new cache for annotation-processors, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@959a86b Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] Creating new cache for resourceHashesCache, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2004d553 Creating new cache for taskHistory, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@32c5913d Creating new cache for outputFiles, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@28d6f256 :compileJava (Thread[Daemon worker,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 1.735 secs. Creating new cache for metadata-2.36/module-metadata, path /build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@59f3ed01 Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing org.apache.commons:commons-lang3:jar:3.4 -> org.apache.commons:commons-lang3:jar:debian Passing through org.apache.commons:commons-parent:jar:debian Passing through org.apache:apache:jar:debian Replacing org.apache.logging.log4j:log4j-api:jar:2.3 -> org.apache.logging.log4j:log4j-api:jar:debian Passing through org.apache.logging.log4j:log4j:jar:debian Replacing org.apache.logging.log4j:log4j-core:jar:2.3 -> org.apache.logging.log4j:log4j-core:jar:debian Replacing org.freemarker:freemarker:jar:2.3.23 -> org.freemarker:freemarker:jar:debian Replacing com.google.code.gson:gson:jar:2.2.2 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian Skipping task ':compileJava' as it is up-to-date (took 4.194 secs). :compileJava UP-TO-DATE :compileJava (Thread[Daemon worker,5,main]) completed. Took 6.903 secs. :processResources (Thread[Daemon worker,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. Skipping task ':processResources' as it is up-to-date (took 0.105 secs). :processResources UP-TO-DATE :processResources (Thread[Daemon worker,5,main]) completed. Took 0.191 secs. :classes (Thread[Daemon worker,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE :classes (Thread[Daemon worker,5,main]) completed. Took 0.002 secs. :compileTestJava (Thread[Daemon worker,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Passing through org.testng:testng:jar:debian Replacing org.mockito:mockito-core:jar:2.10.0 -> org.mockito:mockito-core:jar:debian Passing through org.beanshell:bsh:jar:debian Passing through com.beust:jcommander:jar:debian Passing through net.bytebuddy:byte-buddy:jar:debian Passing through net.bytebuddy:byte-buddy-parent:jar:debian Passing through net.bytebuddy:byte-buddy-agent:jar:debian Passing through org.objenesis:objenesis:jar:debian Passing through org.objenesis:objenesis-parent:jar:debian Passing through net.bytebuddy:byte-buddy-dep:jar:debian Passing through org.ow2.asm:asm:jar:debian Passing through org.ow2.asm:asm-commons:jar:debian Passing through org.ow2.asm:asm-analysis:jar:debian Up-to-date check for task ':compileTestJava' took 15.522 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocWorkUnitTest.java:3: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandlerUnitTest.java:3: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandlerUnitTest.java:4: warning: [removal] FieldDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.FieldDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/testdoclets/TestDoclet.java:3: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/testdoclets/TestDoclet.java:4: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.RootDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:3: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.ClassDoc; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:4: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal import com.sun.javadoc.Tag; ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocumentationGenerationIntegrationTest.java:241: warning: [removal] Main in com.sun.tools.javadoc has been deprecated and marked for removal com.sun.tools.javadoc.Main.execute( ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/testdoclets/TestDoclet.java:18: warning: [removal] RootDoc in com.sun.javadoc has been deprecated and marked for removal public static boolean start(RootDoc rootDoc) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/testdoclets/TestDoclet.java:29: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc classDoc, ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:21: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal public static ClassDoc mockClassDoc(final String javadocText, ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:24: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc mockedClassDoc = Mockito.mock(ClassDoc.class); ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:24: warning: [removal] ClassDoc in com.sun.javadoc has been deprecated and marked for removal final ClassDoc mockedClassDoc = Mockito.mock(ClassDoc.class); ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:26: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal final Tag[] javadoc = Arrays.stream(javadocText.split("\n")) ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:28: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal .toArray(Tag[]::new); ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:30: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal final Tag[] inline = inlineTags.entrySet().stream() ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:32: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal .toArray(Tag[]::new); ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:37: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal private static Tag mockTag(final String name, final String text) { ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:38: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal final Tag tag = Mockito.mock(Tag.class); ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/help/DocGenMocks.java:38: warning: [removal] Tag in com.sun.javadoc has been deprecated and marked for removal final Tag tag = Mockito.mock(Tag.class); ^ /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java:117: warning: [deprecation] newInstance() in Class has been deprecated testPluginBase = (TestPluginBase) pluggableClass.newInstance(); ^ where T is a type-variable: T extends Object declared in class Class /build/barclay-aFzE4C/barclay-2.1.0/src/test/java/org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java:393: warning: [deprecation] newInstance() in Class has been deprecated final TestPluginArgCollisionBase plugin = (TestPluginArgCollisionBase) pluggableClass.newInstance(); ^ where T is a type-variable: T extends Object declared in class Class 22 warnings :compileTestJava (Thread[Daemon worker,5,main]) completed. Took 43.704 secs. :processTestResources (Thread[Task worker for ':' Thread 3,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. Up-to-date check for task ':processTestResources' took 0.306 secs. It is not up-to-date because: No history is available. :processTestResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 1.2 secs. :testClasses (Thread[Daemon worker,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. :testClasses (Thread[Daemon worker,5,main]) completed. Took 0.001 secs. :test (Thread[Daemon worker,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.002 secs. Up-to-date check for task ':test' took 5.017 secs. It is not up-to-date because: Task.upToDateWhen is false. Starting process 'Gradle Test Executor 1'. Working directory: /build/barclay-aFzE4C/barclay-2.1.0 Command: /usr/lib/jvm/java-11-openjdk-amd64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath17346570112306964072txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Running Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@5560a110, [], /tmp/enabledExpansion4327646203304719999.args, [Ljava.lang.String;@3edccc4c, [Ljava.lang.String;@6d7abc3f, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@5560a110, [], /tmp/enabledExpansion4327646203304719999.args, [Ljava.lang.String;@3edccc4c, [Ljava.lang.String;@6d7abc3f, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) produced standard out/err: ERROR StatusLogger No Log4j 2 configuration file found. Using default configuration (logging only errors to the console), or user programmatically provided configurations. Set system property 'log4j2.debug' to show Log4j 2 internal initialization logging. See https://logging.apache.org/log4j/2.x/manual/configuration.html for instructions on how to configure Log4j 2 Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests.testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@5560a110, [], /tmp/enabledExpansion4327646203304719999.args, [Ljava.lang.String;@3edccc4c, [Ljava.lang.String;@6d7abc3f, false) STANDARD_ERROR ERROR StatusLogger No Log4j 2 configuration file found. Using default configuration (logging only errors to the console), or user programmatically provided configurations. Set system property 'log4j2.debug' to show Log4j 2 internal initialization logging. See https://logging.apache.org/log4j/2.x/manual/configuration.html for instructions on how to configure Log4j 2 Running Test: Test method testCollectionFromExpansionFile[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@325e7837, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion7235925604449978731.args, [Ljava.lang.String;@3edccc4c, [Ljava.lang.String;@6526041b, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromExpansionFile[2](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@7168d5bf, [], /tmp/enabledExpansion15945106877617113083.list, [Ljava.lang.String;@3edccc4c, [Ljava.lang.String;@7a9fb79f, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromExpansionFile[3](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@7032375f, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion12163539168362428359.list, [Ljava.lang.String;@3edccc4c, [Ljava.lang.String;@20651580, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromExpansionFile[4](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@1526ae44, [], /tmp/enabledExpansion5072480902184743403.args, [Ljava.lang.String;@3edccc4c, [Ljava.lang.String;@39d590cc, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromExpansionFile[5](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@554e59f1, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion15087524289471947385.args, [Ljava.lang.String;@3edccc4c, [Ljava.lang.String;@74782c35, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromExpansionFile[6](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@3bd57ea8, [], /tmp/enabledExpansion2739030075044762469.list, [Ljava.lang.String;@3edccc4c, [Ljava.lang.String;@299a7c2a, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromExpansionFile[7](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@22232228, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion1853549576368440224.list, [Ljava.lang.String;@3edccc4c, [Ljava.lang.String;@15008f6b, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromListFileMixed[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@76127376, [], [Ljava.lang.String;@2d16b117, [Ljava.lang.String;@4712de44, [Ljava.lang.String;@3207a2c1, [Ljava.lang.String;@576bee34)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionFromListFileMixed[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@3d0731c4, [APPEND_TO_COLLECTIONS], [Ljava.lang.String;@2d16b117, [Ljava.lang.String;@4712de44, [Ljava.lang.String;@4002aa80, [Ljava.lang.String;@4726cdec)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionThatCannotBeAutoInitialized(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testGetCommandLineWithExpansionFile(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[0]([Ljava.lang.String;@39c95c40, [APPEND_TO_COLLECTIONS], [foo, bar, baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[1]([Ljava.lang.String;@39c95c40, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[2]([Ljava.lang.String;@3e116b32, [APPEND_TO_COLLECTIONS], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[3]([Ljava.lang.String;@3e116b32, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[4]([Ljava.lang.String;@63d42e5c, [APPEND_TO_COLLECTIONS], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[5]([Ljava.lang.String;@63d42e5c, [], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[6]([Ljava.lang.String;@c75da35, [APPEND_TO_COLLECTIONS], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testInitializedCollections[7]([Ljava.lang.String;@59cb6167, [[]], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testRejectNonCollectionFileExpansionSuppression(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testUninitializedCollections[0]([Ljava.lang.String;@25f4eeae, [], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testUninitializedCollections[1]([Ljava.lang.String;@25f4eeae, [APPEND_TO_COLLECTIONS], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method passingMutexCheck[0](simple mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@54fd94a6, [Ljava.lang.String;@64275612)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method passingMutexCheck[1](collection mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@4a5b7d6c, [Ljava.lang.String;@3f5c810)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method passingMutexCheck[2](collection multiple mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@1b3e5661, [Ljava.lang.String;@105675a2)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method passingMutexCheck[3](scalar mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@11059e83, [Ljava.lang.String;@70c79114)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAbbreviationsAreRejected(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAdvancedArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentCollection(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentNameCollision(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentUseClash(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentsFile(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testBadFieldCausesException(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testBadValue(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testBetaExperimentalMutex(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testBetaFeatureUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testCombinationOfFlags(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testDefault(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testExperimentalFeatureUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFailingMutex[0](no args, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@2473b815, [Ljava.lang.String;@19d3c368)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFailingMutex[1](1 of group required, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@70de3baa, [Ljava.lang.String;@422e0e5a)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFailingMutex[2](mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@5112e1f7, [Ljava.lang.String;@7bf4d80f)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFailingMutex[3](mega mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@18c37171, [Ljava.lang.String;@75bf9b2)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFailingMutex[4](collection and scalar mutex mix, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@3a203f0, [Ljava.lang.String;@1598d0e3)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagNoArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagWithPositionalFollowing(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagsWithArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testGatherArgumentValuesOfType[0]([--childSuperTypeTarget, childSuperTypeTargetValue, --childSubTypeTarget, childSubTypeTargetValue, --parentSuperTypeTarget, parentSuperTypeTargetValue, --parentSubTypeTarget, parentSubTypeTargetValue, --childCollectionSuperTypeTarget, childCollectionSuperTypeTargetValue, --childCollectionSubTypeTarget, childCollectionSubTypeTargetValue, --parentCollectionSuperTypeTarget, parentCollectionSuperTypeTargetValue, --parentCollectionSubTypeTarget, parentCollectionSubTypeTargetValue, --childListSuperTypeTarget, childListSuperTypeTargetValue1, --childListSuperTypeTarget, childListSuperTypeTargetValue2, --childListSuperTypeTarget, childListSuperTypeTargetValue3, --childListSubTypeTarget, childListSubTypeTargetValue1, --childListSubTypeTarget, childListSubTypeTargetValue2, --childListSubTypeTarget, childListSubTypeTargetValue3, --parentListSuperTypeTarget, parentListSuperTypeTargetValue1, --parentListSuperTypeTarget, parentListSuperTypeTargetValue2, --parentListSuperTypeTarget, parentListSuperTypeTargetValue3, --parentListSubTypeTarget, parentListSubTypeTargetValue1, --parentListSubTypeTarget, parentListSubTypeTargetValue2, --parentListSubTypeTarget, parentListSubTypeTargetValue3, --childCollectionListSuperTypeTarget, childCollectionListSuperTypeTargetValue1, --childCollectionListSuperTypeTarget, childCollectionListSuperTypeTargetValue2, --childCollectionListSuperTypeTarget, childCollectionListSuperTypeTargetValue3, --childNonTargetArgument, 1, --parentNonTargetArgument, 1, --childCollectionNonTargetArgument, 1, --parentCollectionNonTargetArgument, 1, --childNonTargetListArgument, 1], [(childCollectionListSuperTypeTarget,childCollectionListSuperTypeTargetValue1), (childCollectionListSuperTypeTarget,childCollectionListSuperTypeTargetValue2), (childCollectionListSuperTypeTarget,childCollectionListSuperTypeTargetValue3), (childCollectionSubTypeTarget,childCollectionSubTypeTargetValue), (childCollectionSuperTypeTarget,childCollectionSuperTypeTargetValue), (childListSubTypeTarget,childListSubTypeTargetValue1), (childListSubTypeTarget,childListSubTypeTargetValue2), (childListSubTypeTarget,childListSubTypeTargetValue3), (childListSuperTypeTarget,childListSuperTypeTargetValue1), (childListSuperTypeTarget,childListSuperTypeTargetValue2), (childListSuperTypeTarget,childListSuperTypeTargetValue3), (childSubTypeTarget,childSubTypeTargetValue), (childSuperTypeTarget,childSuperTypeTargetValue), (parentCollectionSubTypeTarget,parentCollectionSubTypeTargetValue), (parentCollectionSuperTypeTarget,parentCollectionSuperTypeTargetValue), (parentListSubTypeTarget,parentListSubTypeTargetValue1), (parentListSubTypeTarget,parentListSubTypeTargetValue2), (parentListSubTypeTarget,parentListSubTypeTargetValue3), (parentListSuperTypeTarget,parentListSuperTypeTargetValue1), (parentListSuperTypeTarget,parentListSuperTypeTargetValue2), (parentListSuperTypeTarget,parentListSuperTypeTargetValue3), (parentSubTypeTarget,parentSubTypeTargetValue), (parentSuperTypeTarget,parentSuperTypeTargetValue), (uninitializedChildCollectionTarget,null), (uninitializedChildListTarget,null), (uninitializedChildTarget,null), (uninitializedParentCollectionTarget,null), (uninitializedParentTarget,null)])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testGatherArgumentValuesOfTypeWithParameterizedType(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testGetCommandLine(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testGetCommandLineWithSensitiveArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: USAGE: BooleanFlags [arguments] Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest.testHelp STANDARD_ERROR USAGE: BooleanFlags [arguments] Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Usage: program [arguments...] Usage: program [arguments...] Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Version:null Version:null Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Optional Arguments: Optional Arguments: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --antiflag1:Boolean Undocumented option Default value: false. Possible values: {true, false} Cannot be used --antiflag1:Boolean Undocumented option Default value: false. Possible values: {true, false} Cannot be used Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: in conjuction with argument(s) flag1 in conjuction with argument(s) flag1 Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --arguments_file:File read one or more arguments files and add them to the command line This argument may be --arguments_file:File read one or more arguments files and add them to the command line This argument may be Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: specified 0 or more times. Default value: null. specified 0 or more times. Default value: null. Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --flag1:Boolean Undocumented option Default value: false. Possible values: {true, false} Cannot be used --flag1:Boolean Undocumented option Default value: false. Possible values: {true, false} Cannot be used Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: in conjuction with argument(s) antiflag1 in conjuction with argument(s) antiflag1 Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --flag2:Boolean Undocumented option Default value: true. Possible values: {true, false} --flag2:Boolean Undocumented option Default value: true. Possible values: {true, false} Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --flag3:Boolean Undocumented option Default value: false. Possible values: {true, false} --flag3:Boolean Undocumented option Default value: false. Possible values: {true, false} Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --help,-h:Boolean display the help message Default value: false. Possible values: {true, false} --help,-h:Boolean display the help message Default value: false. Possible values: {true, false} Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --version:Boolean display the version number for this tool Default value: false. Possible values: {true, --version:Boolean display the version number for this tool Default value: false. Possible values: {true, Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: false} false} Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Advanced Arguments: Advanced Arguments: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: --showHidden,-showHidden:Boolean --showHidden,-showHidden:Boolean Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: display hidden arguments Default value: false. Possible values: {true, false} display hidden arguments Default value: false. Possible values: {true, false} Test: Test method testHelp(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testHiddenArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testHiddenRequiredArgumentThrowException(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testLongPreamble(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testMissingRequiredCollectionArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testNotEnoughOfListArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOptionalOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[0]([Ljava.lang.String;@3617b48d)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[1]([Ljava.lang.String;@331d8255)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[2]([Ljava.lang.String;@193cfade)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[3]([Ljava.lang.String;@2f4705aa)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[4]([Ljava.lang.String;@2aca499a)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[5]([Ljava.lang.String;@63a20ffe)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[6]([Ljava.lang.String;@6a007ec9)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOutOfRangesArguments[7]([Ljava.lang.String;@5a5c60b6)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPositive(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPrivateArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredAdvancedNotAllowed(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testVersionSpecialFlag(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Test: Test method testVersionSpecialFlag(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) produced standard out/err: Version:null Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest.testVersionSpecialFlag STANDARD_ERROR Version:null Running Test: Test method testWithBoundariesArgumentsForNoNumeric(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithDoubleBoundariesArgumentsForInteger(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[0]([Ljava.lang.String;@73f814ba, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[1]([Ljava.lang.String;@ad8c6db, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[2]([Ljava.lang.String;@2104e98c, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[3]([Ljava.lang.String;@1c48d854, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[4]([Ljava.lang.String;@3dca3cfb, 1, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[5]([Ljava.lang.String;@cbfdca6, null, 2.0)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithinBoundariesArguments[6]([Ljava.lang.String;@48c68bcb, 1, 2.0)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testBasicPlugin[0]([Ljava.lang.String;@368c7bfd, 0)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testBasicPlugin[1]([Ljava.lang.String;@7e71bd7f, 1)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[0](TestPluginWithRequiredArg, requiredStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[1](TestPluginWithOptionalArg, optionalStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testEnableMultiplePlugins(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testEnableNonExistentPlugin(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testNoPluginsSpecified(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testPluginArgumentNameCollision(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testPluginUsage(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testRequiredDependentArguments[0](TestPluginWithRequiredArg, requiredStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false) STANDARD_OUT [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 201ms] [parsing completed 201ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 191ms] [parsing completed 191ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 308ms] [parsing completed 308ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 85ms] [parsing completed 85ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 19ms] [parsing completed 19ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 81ms] [parsing completed 81ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 91ms] [parsing completed 91ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 208ms] [parsing completed 208ms] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[0](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@74158f87, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 11674 ms] [done in 11674 ms] Running Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false) STANDARD_OUT [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 95ms] [parsing completed 95ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 218ms] [parsing completed 218ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 7ms] [parsing completed 7ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 88ms] [parsing completed 88ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 96ms] [parsing completed 96ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 98ms] [parsing completed 98ms] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[1](class org.broadinstitute.barclay.help.HelpDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@47ba6f08, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 6980 ms] [done in 6980 ms] Running Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false) STANDARD_OUT [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 79ms] [parsing completed 79ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 199ms] [parsing completed 199ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 11ms] [parsing completed 11ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 97ms] [parsing completed 97ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 102ms] [parsing completed 102ms] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[2](class org.broadinstitute.barclay.help.testdoclets.TestDoclet, src/test/resources/org/broadinstitute/barclay/help/templates/TestDoclet, src/test/resources/org/broadinstitute/barclay/help/expected/TestDoclet, index, html, html, html, html, [Ljava.lang.String;@5705fc6, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 4804 ms] [done in 4804 ms] Running Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true) STANDARD_OUT [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 14ms] [parsing completed 14ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 79ms] [parsing completed 79ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 3ms] [parsing completed 3ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 3ms] [parsing completed 3ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 96ms] [parsing completed 96ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 92ms] [parsing completed 92ms] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[3](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, src/main/resources/org/broadinstitute/barclay/helpTemplates, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@55723e2d, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 3401 ms] [done in 3401 ms] Running Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false) STANDARD_OUT [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 10ms] [parsing completed 10ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 86ms] [parsing completed 86ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 3ms] [parsing completed 3ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 94ms] [parsing completed 94ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 100ms] [parsing completed 100ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 111ms] [parsing completed 111ms] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[4](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, html, html, [Ljava.lang.String;@6d12a271, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 3728 ms] [done in 3728 ms] Running Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false) STANDARD_OUT [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 102ms] [parsing completed 102ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 11ms] [parsing completed 11ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 90ms] [parsing completed 90ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 3ms] [parsing completed 3ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 5ms] [parsing completed 5ms] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[5](class org.broadinstitute.barclay.help.HelpDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/HelpDoclet, index, html, html, xhtml, html, [Ljava.lang.String;@10d46e05, false)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 2887 ms] [done in 2887 ms] Running Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true) STANDARD_OUT [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 109ms] [parsing completed 109ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 79ms] [parsing completed 79ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 95ms] [parsing completed 95ms] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[6](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunch-completion, sh, sh, sh, sh, [Ljava.lang.String;@2f59c770, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 2300 ms] [done in 2300 ms] Running Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.ci/module-info.class] Gradle suite > Gradle test > org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest.testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true) STANDARD_OUT [loading /modules/jdk.internal.vm.ci/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.security.auth/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.jfr/module-info.class] [loading /modules/jdk.management.jfr/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.rmic/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml/module-info.class] [loading /modules/java.xml/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.jcmd/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.ldap/module-info.class] [loading /modules/jdk.naming.ldap/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.compiler/module-info.class] [loading /modules/java.compiler/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdi/module-info.class] [loading /modules/jdk.jdi/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.editpad/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.localedata/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.jsobject/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.transaction.xa/module-info.class] [loading /modules/java.transaction.xa/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jstatd/module-info.class] [loading /modules/jdk.jstatd/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.management/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.attach/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.pack/module-info.class] [loading /modules/jdk.pack/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.logging/module-info.class] [loading /modules/java.logging/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql/module-info.class] [loading /modules/java.sql/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jconsole/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.scripting/module-info.class] [loading /modules/java.scripting/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.sql.rowset/module-info.class] [loading /modules/java.sql.rowset/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jfr/module-info.class] [loading /modules/jdk.jfr/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.net/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.management.agent/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.httpserver/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.dynalink/module-info.class] [loading /modules/jdk.dynalink/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.jdeps/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler/module-info.class] [loading /modules/jdk.internal.vm.compiler/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.javadoc/module-info.class] [loading /modules/jdk.javadoc/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management/module-info.class] [loading /modules/java.management/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported/module-info.class] [loading /modules/jdk.unsupported/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.aot/module-info.class] [loading /modules/jdk.aot/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.datatransfer/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.vm.compiler.management/module-info.class] [loading /modules/jdk.internal.vm.compiler.management/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.xml.crypto/module-info.class] [loading /modules/java.xml.crypto/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/module-info.class] [loading /modules/java.base/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.instrument/module-info.class] [loading /modules/java.instrument/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.internal.le/module-info.class] [loading /modules/jdk.internal.le/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.zipfs/module-info.class] [loading /modules/jdk.zipfs/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.rmi/module-info.class] [loading /modules/java.rmi/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.prefs/module-info.class] [loading /modules/java.prefs/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.naming/module-info.class] [loading /modules/java.naming/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.jgss/module-info.class] [loading /modules/java.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.jshell/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.net.http/module-info.class] [loading /modules/java.net.http/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.charsets/module-info.class] [loading /modules/jdk.charsets/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.unsupported.desktop/module-info.class] [loading /modules/jdk.unsupported.desktop/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jartool/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.desktop/module-info.class] [loading /modules/java.desktop/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.sctp/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.accessibility/module-info.class] [loading /modules/jdk.accessibility/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.compiler/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.management.rmi/module-info.class] [loading /modules/java.management.rmi/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.smartcardio/module-info.class] [loading /modules/java.smartcardio/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.jlink/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.security.sasl/module-info.class] [loading /modules/java.security.sasl/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.se/module-info.class] [loading /modules/java.se/module-info.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.help.testinputs... Loading source files for package org.broadinstitute.barclay.help.testinputs... Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestBaseArgumentType.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentContainer.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestArgumentCollection.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/help/testinputs/TestExtraDocs.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 1ms] [parsing completed 1ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Loading source files for package org.broadinstitute.barclay.argparser... Loading source files for package org.broadinstitute.barclay.argparser... Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 609ms] [parsing completed 609ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TaggedArgumentTest.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 6ms] [parsing completed 6ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CollectionArgumentUnitTests.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/StrictBooleanConverterTest.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 88ms] [parsing completed 88ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/TestProgramGroup.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 0ms] [parsing completed 0ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 2ms] [parsing completed 2ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] [parsing started DirectoryFileObject[src/test/java:org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest.java]] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [parsing completed 13ms] [parsing completed 13ms] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: Constructing Javadoc information... Constructing Javadoc information... Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for source files: src/test/java] [search path for source files: src/test/java] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] [search path for class files: /usr/lib/jvm/java-11-openjdk-amd64/lib/modules,/build/barclay-aFzE4C/barclay-2.1.0/.gradle/caches/4.4.1/workerMain/gradle-worker.jar,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/test,/build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main,/build/barclay-aFzE4C/barclay-2.1.0/build/resources/main,/usr/share/maven-repo/net/sf/jopt-simple/jopt-simple/debian/jopt-simple-debian.jar,/usr/share/maven-repo/org/apache/commons/commons-lang3/debian/commons-lang3-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-core/debian/log4j-core-debian.jar,/usr/share/maven-repo/org/apache/logging/log4j/log4j-api/debian/log4j-api-debian.jar,/usr/share/maven-repo/org/freemarker/freemarker/debian/freemarker-debian.jar,/usr/share/maven-repo/com/google/code/gson/gson/debian/gson-debian.jar,/usr/share/maven-repo/org/testng/testng/debian/testng-debian.jar,/usr/share/maven-repo/org/mockito/mockito-core/debian/mockito-core-debian.jar,/usr/share/java/objenesis.jar,/usr/share/java/cglib.jar,/usr/share/java/hamcrest-core.jar,/usr/share/java/asm.jar,/usr/share/java/junit4.jar,/usr/share/maven-repo/org/beanshell/bsh/debian/bsh-debian.jar,/usr/share/maven-repo/com/beust/jcommander/debian/jcommander-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy/debian/byte-buddy-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-agent/debian/byte-buddy-agent-debian.jar,/usr/share/maven-repo/net/bytebuddy/byte-buddy-dep/debian/byte-buddy-dep-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-commons/debian/asm-commons-debian.jar,/usr/share/maven-repo/org/ow2/asm/asm-analysis/debian/asm-analysis-debian.jar] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Argument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/File.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/List.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/Object.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginProvider.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/help/DocumentedFeature.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramProperties.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/BetaFeature.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/String.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Double.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/ArrayList.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Enum.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/lang/Comparable.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/io/Serializable.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParser$ClpEnum.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLinePluginDescriptor.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ExperimentalFeature.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] [loading /usr/share/java/commons-lang3.jar(/org/apache/commons/lang3/tuple/Pair.class)] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] [loading /usr/share/java/testng.jar(/org/testng/Assert.class)] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/DataProvider.class)] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] [loading /usr/share/java/testng.jar(/org/testng/annotations/Test.class)] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/ByteArrayOutputStream.class] [loading /modules/java.base/java/io/ByteArrayOutputStream.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/PrintStream.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/PrintWriter.class] [loading /modules/java.base/java/io/PrintWriter.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/reflect/Field.class] [loading /modules/java.base/java/lang/reflect/Field.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/function/Consumer.class] [loading /modules/java.base/java/util/function/Consumer.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/Exception.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Runnable.class] [loading /modules/java.base/java/lang/Runnable.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Integer.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Boolean.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/util/Map.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/io/IOException.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/util/Set.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineParserOptions.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/HashSet.class] [loading /modules/java.base/java/util/HashSet.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/util/Collection.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] [loading /usr/share/java/joptsimple.jar(/joptsimple/ValueConversionException.class)] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineProgramGroup.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/lang/Class.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/IllegalAccessException.class] [loading /modules/java.base/java/lang/IllegalAccessException.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/InstantiationException.class] [loading /modules/java.base/java/lang/InstantiationException.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/io/Closeable.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/lang/AutoCloseable.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/io/Flushable.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/Deprecated.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/Retention.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/Target.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/ElementType.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/annotation/Annotation.class] [loading /modules/java.base/java/lang/annotation/Annotation.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ArgumentCollection.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/PositionalArguments.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Hidden.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/Advanced.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Override.class] [loading /modules/java.base/java/lang/Override.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$CommandLineParserInternalException.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$MissingArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$BadArgumentValue.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/CommandLineException$OutOfRangeArgumentValue.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/SuppressWarnings.class] [loading /modules/java.base/java/lang/SuppressWarnings.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Byte.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Character.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Short.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Long.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Float.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/lang/Void.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /modules/java.base/java/lang/AssertionError.class] [loading /modules/java.base/java/lang/AssertionError.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/help/testinputs/TestArgumentContainer$1.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/ClassFinder.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser$1OptionFileContainerForUsage.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/TaggedArgumentParser.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/main/org/broadinstitute/barclay/argparser/StrictBooleanConverter.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithHiddenArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredAdvancedArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithDoubleBoundariesArgumentsForInteger.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/TaggedArgumentTest$1.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithAdvancedArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1WithBoundariesArgumentsForString.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParserTest$1.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] [loading /build/barclay-aFzE4C/barclay-2.1.0/build/classes/java/test/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest$1ToolWithRequiredHiddenArgument.class] Test: Test method testDocGenRoundTrip[7](class org.broadinstitute.barclay.help.BashTabCompletionDoclet, null, src/test/resources/org/broadinstitute/barclay/help/expected/BashTabCompletionDoclet, bashTabCompletionDocletTestLaunchWithDefaults-completion, sh, sh, sh, sh, [Ljava.lang.String;@11cba93e, true)(org.broadinstitute.barclay.help.DocumentationGenerationIntegrationTest) produced standard out/err: [done in 3515 ms] [done in 3515 ms] Running Test: Test method testAddToDefaultValuesListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testArgumentCollectionFlat(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testArgumentCollectionNested(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testArgumentCollectionNoReferenceProvidedForOptional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'REFERENCE_SEQUENCE' is required. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testArgumentCollectionNoReferenceProvidedForRequired STANDARD_ERROR ERROR: Option 'REFERENCE_SEQUENCE' is required. Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: ToolWithRequiredReference [options] USAGE: ToolWithRequiredReference [options] Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: REFERENCE_SEQUENCE=File A reference is required Required. REFERENCE_SEQUENCE=File A reference is required Required. Test: Test method testArgumentCollectionNoReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testArgumentCollectionWithReferenceProvidedForOptional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testArgumentCollectionWithReferenceProvidedForRequired(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: 'HiMom' is not a valid value for FrobnicationFlavor. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testBadEnumValue STANDARD_ERROR ERROR: 'HiMom' is not a valid value for FrobnicationFlavor. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testBadEnumValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Problem constructing Integer from the string 'ABC'. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testBadValue STANDARD_ERROR ERROR: Problem constructing Integer from the string 'ABC'. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testBadValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testBetaExperimentalMutex(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testBetaFeatureUsage(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testClearDefaultValuesFromListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testClearDefaultValuesFromListOptionAndAddNew(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testCollectionThatCannotBeAutoInitialized(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testExperimentalFeatureUsage(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testForIdenticalShortName(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[0](hello, hello)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[1](, )(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[2](hibye, hi bye)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[3](hibye, hibye)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[4](hi
  • bye, hi - bye)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[5](hibye, hibye)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[6](
    , 

)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest)
Running Test: Test method testHTMLConverter[7]( string,  string (http://go.here.org))(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest)
Running Test: Test method testHTMLConverter[8]( string,  string (http://go.here.org))(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest)
Running Test: Test method testHTMLConverter[9](< a href="http://go.here.org"> string,  string (http://go.here.org))(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest)
Running Test: Test method testHTMLConverter[10](hi
    • bye, hi bye)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHTMLConverter[11](Using read outputs from high throughput sequencing (HTS) technologies, this tool provides metrics regarding the quality of read alignments to a reference sequence, as well as the proportion of the reads that passed machine signal-to-noise threshold quality filters (Illumina).

    Usage example:

        java -jar picard.jar CollectAlignmentSummaryMetrics \
              R=reference_sequence.fasta \
              I=input.bam \
              O=output.txt
    Please see     the AlignmentSummaryMetrics documentation for detailed explanations of each metric.

    Additional information about Illumina's quality filters can be found in the following documents on the Illumina website:
    , Using read outputs from high throughput sequencing (HTS) technologies, this tool provides metrics regarding the quality of read alignments to a reference sequence, as well as the proportion of the reads that passed machine signal-to-noise threshold quality filters (Illumina). Usage example: java -jar picard.jar CollectAlignmentSummaryMetrics \ R=reference_sequence.fasta \ I=input.bam \ O=output.txt Please see the AlignmentSummaryMetrics documentation (http://broadinstitute.github.io/picard/picard-metric-definitions.html#AlignmentSummaryMetrics) for detailed explanations of each metric. Additional information about Illumina's quality filters can be found in the following documents on the Illumina website: - hiseq-x-percent-pf-technical-note (http://support.illumina.com/content/dam/illumina-marketing/documents/products/technotes/hiseq-x-percent-pf-technical-note-770-2014-043.pdf) - hiseq-x-system-guide (http://support.illumina.com/content/dam/illumina-support/documents/documentation/system_documentation/hiseqx/hiseq-x-system-guide-15050091-d.pdf) )(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHtmlUnescape[0](<, <)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHtmlUnescape[1](x)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testHtmlUnescape[4]( x y< x , x<y y< x )(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[0](-15)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[1](-5)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[2](-2)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[3](1)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[4](0)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[5](2)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[6](5)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testIgnoringBoundaries[7](10)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testLongPreamble(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'FROBNICATION_FLAVOR' is required. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMissingRequiredArgument STANDARD_ERROR ERROR: Option 'FROBNICATION_FLAVOR' is required. Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testMutex[0](pass, [Ljava.lang.String;@51f96f13, true)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false) STANDARD_ERROR ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[1](no args, [Ljava.lang.String;@28b2fa71, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false) STANDARD_ERROR ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@246929d1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[3](mutex, [Ljava.lang.String;@787f02be, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[3](mutex, [Ljava.lang.String;@787f02be, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@6bae7f1f, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testNonASCIIAccept(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testNonASCIIReject(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testNonAsciiAssertion(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testNonAsciiConverted(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'SHMIGGLE_TYPE' must be specified at least 1 times. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testNotEnoughOfListOption STANDARD_ERROR ERROR: Option 'SHMIGGLE_TYPE' must be specified at least 1 times. Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testNotEnoughOfListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: At least 2 positional arguments must be specified. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testNotEnoughPositional STANDARD_ERROR ERROR: At least 2 positional arguments must be specified. Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: non-null value must be provided for 'FROBNICATION_THRESHOLD'. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testNullValue STANDARD_ERROR ERROR: non-null value must be provided for 'FROBNICATION_THRESHOLD'. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptionsWithNullList [options] USAGE: FrobnicateOptionsWithNullList [options] Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Required. T=Integer Frobnication threshold setting. Required. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Default value: BAR. This option can be set to 'null' to clear the Undocumented option Default value: BAR. This option can be set to 'null' to clear the Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: default value. Possible values: {FOO, BAR, BAZ} default value. Possible values: {FOO, BAR, BAZ} Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option must be specified no more than 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option must be specified no more than 3 Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Default value: false. This option can be set to 'null' to clear the TRUTHINESS=Boolean Undocumented option Default value: false. This option can be set to 'null' to clear the Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: default value. Possible values: {true, false} default value. Possible values: {true, false} Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: non-null value must be provided for 'FROBNICATION_THRESHOLD'. ERROR: non-null value must be provided for 'FROBNICATION_THRESHOLD'. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptionsWithNullList [options] USAGE: FrobnicateOptionsWithNullList [options] Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Required. T=Integer Frobnication threshold setting. Required. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Default value: BAR. This option can be set to 'null' to clear the Undocumented option Default value: BAR. This option can be set to 'null' to clear the Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: default value. Possible values: {FOO, BAR, BAZ} default value. Possible values: {FOO, BAR, BAZ} Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option must be specified no more than 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option must be specified no more than 3 Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Default value: false. This option can be set to 'null' to clear the TRUTHINESS=Boolean Undocumented option Default value: false. This option can be set to 'null' to clear the Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: default value. Possible values: {true, false} default value. Possible values: {true, false} Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testNullValue(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testOptionDefinitionCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'FROBNICATION_FLAVOR' cannot be specified more than once. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testOptionUseCaseClash STANDARD_ERROR ERROR: Option 'FROBNICATION_FLAVOR' cannot be specified more than once. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testOptionUseCaseClash(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testOptionsFile(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'T' cannot be specified more than once. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testOptionsFileWithDisallowedOverride STANDARD_ERROR ERROR: Option 'T' cannot be specified more than once. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testOptionsFileWithDisallowedOverride(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testPositive(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testPositiveTerminalEqualSign(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testPositiveWithSpaces(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testPositiveWithoutPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'SHMIGGLE_TYPE' cannot be used more than 3 times. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testTooManyListOption STANDARD_ERROR ERROR: Option 'SHMIGGLE_TYPE' cannot be used more than 3 times. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line OPTIONS_FILE=File File of OPTION_NAME=value pairs. No positional parameters allowed. Unlike command-line Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: options, unrecognized options are ignored. A single-valued option set in an options file options, unrecognized options are ignored. A single-valued option set in an options file Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: may be overridden by a subsequent command-line option. A line starting with '#' is may be overridden by a subsequent command-line option. A line starting with '#' is Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: considered a comment. Required. considered a comment. Required. Test: Test method testTooManyListOption(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: No more than 2 positional arguments may be specified on the command line. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testTooManyPositional STANDARD_ERROR ERROR: No more than 2 positional arguments may be specified on the command line. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: FrobnicateOptions [options] USAGE: FrobnicateOptions [options] Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: frobnicate [options] input-file output-file Usage: frobnicate [options] input-file output-file Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Read input-file, frobnicate it, and write frobnicated results to output-file Read input-file, frobnicate it, and write frobnicated results to output-file Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Invalid argument 'positional'. Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testUnexpectedPositional STANDARD_ERROR ERROR: Invalid argument 'positional'. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: OptionsWithoutPositional [options] USAGE: OptionsWithoutPositional [options] Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: framistat [options] Usage: framistat [options] Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Compute the plebnick of the freebozzle. Compute the plebnick of the freebozzle. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_THRESHOLD=Integer FROBNICATION_THRESHOLD=Integer Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to T=Integer Frobnication threshold setting. Default value: 20. This option can be set to 'null' to Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: clear the default value. clear the default value. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: FROBNICATION_FLAVOR=FrobnicationFlavor FROBNICATION_FLAVOR=FrobnicationFlavor Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Undocumented option Required. Possible values: {FOO, BAR, BAZ} Undocumented option Required. Possible values: {FOO, BAR, BAZ} Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. times. Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} TRUTHINESS=Boolean Undocumented option Required. Possible values: {true, false} Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testUninitializedCollections(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsage(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositionalWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method recognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) Running Test: Test method unrecognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) Running Test: Test method testBadTaggedArguments[0]([Ljava.lang.String;@1ec39571)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[1]([Ljava.lang.String;@488cece8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[2]([Ljava.lang.String;@16fde1c8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[3]([Ljava.lang.String;@7879a6f1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[4]([Ljava.lang.String;@2799b4ee)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[5]([Ljava.lang.String;@668d6dd3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[6]([Ljava.lang.String;@4de1334e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[7]([Ljava.lang.String;@23216368)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[8]([Ljava.lang.String;@6e4ece00)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[9]([Ljava.lang.String;@368c5c67)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[10]([Ljava.lang.String;@16f1d8e2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[11]([Ljava.lang.String;@39c84a74)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[12]([Ljava.lang.String;@2a50dfb4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[13]([Ljava.lang.String;@456756b6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[14]([Ljava.lang.String;@2a65f3e3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[15]([Ljava.lang.String;@52cf27cb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[16]([Ljava.lang.String;@66c8ac5f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[17]([Ljava.lang.String;@1b37fcc2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[18]([Ljava.lang.String;@64aab261)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[19]([Ljava.lang.String;@368ea11c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[20]([Ljava.lang.String;@5a5c9a46)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[21]([Ljava.lang.String;@57dfbad8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[22]([Ljava.lang.String;@22575818)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[23]([Ljava.lang.String;@4fd19e17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[24]([Ljava.lang.String;@70e5b627)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[25]([Ljava.lang.String;@418f6c75)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[26]([Ljava.lang.String;@21749aac)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[27]([Ljava.lang.String;@72fe290c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[28]([Ljava.lang.String;@614d7e9d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[29]([Ljava.lang.String;@6a1d25a4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[30]([Ljava.lang.String;@4da0b5c1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[31]([Ljava.lang.String;@3be83acc)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[32]([Ljava.lang.String;@6bf4420)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[33]([Ljava.lang.String;@5ef9d0d6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[34]([Ljava.lang.String;@3dd77bf0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[35]([Ljava.lang.String;@60c3bea)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[36]([Ljava.lang.String;@64700868)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[37]([Ljava.lang.String;@4c87b4d4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[38]([Ljava.lang.String;@630f9e69)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[39]([Ljava.lang.String;@86d413b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[40]([Ljava.lang.String;@6e717d13)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[41]([Ljava.lang.String;@7b8dee63)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[42]([Ljava.lang.String;@4d786e0b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[43]([Ljava.lang.String;@3af168e4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[44]([Ljava.lang.String;@400d35a1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[45]([Ljava.lang.String;@360b3bac)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[46]([Ljava.lang.String;@4bc78600)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[47]([Ljava.lang.String;@d783895)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[48]([Ljava.lang.String;@1d934130)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[49]([Ljava.lang.String;@7584e572)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[50]([Ljava.lang.String;@62758a1f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[51]([Ljava.lang.String;@1089b57f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[52]([Ljava.lang.String;@58f30f2c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[53]([Ljava.lang.String;@33c92c7e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testBadTaggedArguments[54]([Ljava.lang.String;@62ebe092)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGetCommandLineTagged[0]([Ljava.lang.String;@6ff6d42d, TaggableArguments --tFullName:tumor gcs://my/tumor.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGetCommandLineTagged[1]([Ljava.lang.String;@48b778a9, TaggableArguments --tFullName:tumor,training=true,truth=false tumor.bam --tFullName:normal,training=false,truth=true normal.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[0]([Ljava.lang.String;@b6f3ac, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@29b04485, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4cea5980)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[1]([Ljava.lang.String;@522ab8f2, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6a136028, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@59524ba0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[2]([Ljava.lang.String;@3e49e548, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@68f05518, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@d36731c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[3]([Ljava.lang.String;@7158fb20, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@a4fbe1c, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@605093b9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[4]([Ljava.lang.String;@159fb074, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@50bdf552, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2cd95d0e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[5]([Ljava.lang.String;@45eb96c8, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@205ae710, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@13d7a290)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[6]([Ljava.lang.String;@7450f629, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@428fc8f3, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5ddac160)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[7]([Ljava.lang.String;@2386a390, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@52875102, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@680e28fd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[8]([Ljava.lang.String;@35c62082, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6b33ffd9, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@26144387)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[9]([Ljava.lang.String;@7ea7acf6, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2dc164c6, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@36af6dd0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[10]([Ljava.lang.String;@48c16094, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@647ac8b9, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@498f4e56)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[11]([Ljava.lang.String;@468ca459, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6d90b805, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@287a487e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[12]([Ljava.lang.String;@7276a9ee, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6d3adf89, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@339847c3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[13]([Ljava.lang.String;@3e6a7a57, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@259ed82b, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3139baca)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[14]([Ljava.lang.String;@67187b95, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@34efae11, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@49eb3a74)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[15]([Ljava.lang.String;@5d303134, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@489cd048, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@737416cf)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[16]([Ljava.lang.String;@24954d1, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@4e1c4693, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5bfab6cd)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testGoodTaggedArguments[17]([Ljava.lang.String;@55b1fde3, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@2de52ed6, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@30928977)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testMixedTagCollectionArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testTaggedScalarArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testNonNullDoesNotThrow(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testNonNullThrows(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testNonNullWithMessageReturn(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testNonNullWithMessageThrows(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[0](hello hello hello hello hello, hello hello hello hello hello, 12)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[1](hello hello hello hello hello, hello hello hello hello hello, 11)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[2](hello hello hello hello hello, hello hello hello hello hello, 10)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[3](hello hello hello hello hello, hello hello hello hello hello, 10)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[4](hello hello hello hello hello, hello hello hello hello hello, 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[5](hello hello hello hello hello , hello hello hello hello hello , 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[6](hello hello hello hello hello , hello hello hello hello hello , 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[7](, , 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[8]( , , 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[9]( , , 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[10](null, null, 20)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[11](hello, hello, 0)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[12](hello, hello, -1)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[13](a b c d e f g, a b c d e f g, 1)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[14](a b c d e f g, a b c d e f g, 0)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[15](a b c d e f g, a b c d e f g, -1)(org.broadinstitute.barclay.utils.UtilsUnitTest) Running Test: Test method testWrapParagraph[16](a b c d e f g, a b c d e f g, -1000)(org.broadinstitute.barclay.utils.UtilsUnitTest) Gradle Test Executor 1 finished executing tests. Results: SUCCESS (281 tests, 281 successes, 0 failures, 0 skipped) Finished generating test XML results (0.682 secs) into: /build/barclay-aFzE4C/barclay-2.1.0/build/test-results/test Generating HTML test report... Finished generating test html results (0.482 secs) into: /build/barclay-aFzE4C/barclay-2.1.0/build/reports/tests/test :test (Thread[Daemon worker,5,main]) completed. Took 1 mins 6.212 secs. BUILD SUCCESSFUL in 2m 50s 5 actionable tasks: 3 executed, 2 up-to-date make[1]: Leaving directory '/build/barclay-aFzE4C/barclay-2.1.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep dh binary-indep --buildsystem=gradle --with javahelper,jh_maven_repo_helper dh_testroot -i -O--buildsystem=gradle dh_prep -i -O--buildsystem=gradle rm -f -- debian/libbarclay-java.substvars rm -fr -- debian/.debhelper/generated/libbarclay-java/ debian/libbarclay-java/ debian/tmp/ dh_auto_install -i -O--buildsystem=gradle install -d /build/barclay-aFzE4C/barclay-2.1.0/debian/libbarclay-java jh_installjavadoc -i -O--buildsystem=gradle dh_installdocs -i -O--buildsystem=gradle install -d debian/libbarclay-java/usr/share/doc/libbarclay-java install -d debian/.debhelper/generated/libbarclay-java install -p -m0644 debian/copyright debian/libbarclay-java/usr/share/doc/libbarclay-java/copyright dh_installchangelogs -i -O--buildsystem=gradle install -p -m0644 debian/changelog debian/libbarclay-java/usr/share/doc/libbarclay-java/changelog.Debian dh_installinit -i -O--buildsystem=gradle dh_perl -i -O--buildsystem=gradle dh_link -i -O--buildsystem=gradle jh_installlibs -i -O--buildsystem=gradle install -d debian/libbarclay-java/usr/share/java install -p -m0644 ./build/libs/barclay-2.1.0.jar debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar rm -f debian/libbarclay-java/usr/share/java/barclay.jar ln -s barclay-2.1.0.jar debian/libbarclay-java/usr/share/java/barclay.jar jh_classpath -i -O--buildsystem=gradle jh_manifest -plibbarclay-java "--classpath=/usr/lib/jvm/default-java/lib/tools.jar /usr/share/java/joptsimple.jar /usr/share/java/log4j-api.jar /usr/share/java/log4j-core.jar /usr/share/java/commons-lang3.jar /usr/share/java/gson.jar" debian/libbarclay-java/usr/share/java/barclay.jar Updating symlinked /build/barclay-aFzE4C/barclay-2.1.0/debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar (via debian/libbarclay-java/usr/share/java/barclay.jar) Reading manifest from /build/barclay-aFzE4C/barclay-2.1.0/debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar Updating manifest in /build/barclay-aFzE4C/barclay-2.1.0/debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar jh_manifest -i -O--buildsystem=gradle find debian/libbarclay-java -name '*.jar' Found symlink usr/share/java/barclay.jar Found usr/share/java/barclay-2.1.0.jar Reading manifest from debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar No update of debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar required. jh_exec -i -O--buildsystem=gradle jh_depends -i -O--buildsystem=gradle Searching /build/barclay-aFzE4C/barclay-2.1.0/debian/libbarclay-java for libbarclay-java Searching /build/barclay-aFzE4C/barclay-2.1.0/debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar Found Jars: /usr/lib/jvm/default-java/lib/tools.jar /usr/share/java/commons-lang3.jar /usr/share/java/gson.jar /usr/share/java/joptsimple.jar /usr/share/java/log4j-api.jar /usr/share/java/log4j-core.jar Checking: /build/barclay-aFzE4C/barclay-2.1.0/debian/libbarclay-java/usr/lib/jvm/default-java/lib/tools.jar Checking: /build/barclay-aFzE4C/barclay-2.1.0/debian/libbarclay-java/usr/share/java/commons-lang3.jar Checking: /build/barclay-aFzE4C/barclay-2.1.0/debian/libbarclay-java/usr/share/java/gson.jar Checking: /build/barclay-aFzE4C/barclay-2.1.0/debian/libbarclay-java/usr/share/java/joptsimple.jar Checking: /build/barclay-aFzE4C/barclay-2.1.0/debian/libbarclay-java/usr/share/java/log4j-api.jar Checking: /build/barclay-aFzE4C/barclay-2.1.0/debian/libbarclay-java/usr/share/java/log4j-core.jar Found Debs: libcommons-lang3-java libgoogle-gson-java libjoptsimple-java liblog4j2-java Adding substvars: java:Depends=libcommons-lang3-java, libgoogle-gson-java, libjoptsimple-java, liblog4j2-java java:Recommends= mh_installpoms -i -O--buildsystem=gradle mh_installpom --package=libbarclay-java --usj-name=barclay debian/pom-barclay.xml mh_cleanpom --package=libbarclay-java --rules=debian/maven.rules debian/pom-barclay.xml debian/.mh/pom.xml debian/.mh/pom.properties mv debian/.mh/pom.xml debian/.mh/barclay-debian.pom install -m 644 -D debian/.mh/barclay-2.1.0.pom debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/2.1.0/barclay-2.1.0.pom install -m 644 -D debian/.mh/barclay-debian.pom debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.pom mh_linkjars --skip-clean-poms -i -O--buildsystem=gradle mh_linkjar --package=libbarclay-java --skip-clean-pom debian/pom-barclay.xml /usr/share/java/barclay.jar dh_link -plibbarclay-java /usr/share/javabarclay.jar usr/share/maven-repo/org/broadinstitute/barclay/2.1.0/barclay-2.1.0.jar rm -f debian/libbarclay-java/usr/share/java/barclay.jar ln -s barclay-2.1.0.jar debian/libbarclay-java/usr/share/java/barclay.jar rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/2.1.0/barclay-2.1.0.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/2.1.0/barclay-2.1.0.jar dh_link -plibbarclay-java /usr/share/javabarclay.jar usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/2.1.0/barclay-2.1.0.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/2.1.0/barclay-2.1.0.jar rm -f debian/libbarclay-java/usr/share/java/barclay.jar ln -s barclay-2.1.0.jar debian/libbarclay-java/usr/share/java/barclay.jar rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar dh_strip_nondeterminism -i -O--buildsystem=gradle Using 1609685228 as canonical time Normalizing debian/libbarclay-java/usr/share/java/barclay-2.1.0.jar using File::StripNondeterminism::handlers::jar dh_compress -i -O--buildsystem=gradle cd debian/libbarclay-java chmod a-x usr/share/doc/libbarclay-java/changelog.Debian gzip -9nf usr/share/doc/libbarclay-java/changelog.Debian cd '/build/barclay-aFzE4C/barclay-2.1.0' dh_fixperms -i -O--buildsystem=gradle find debian/libbarclay-java -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libbarclay-java ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libbarclay-java/usr/share/doc -type f -a -true -a ! -regex 'debian/libbarclay-java/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libbarclay-java/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libbarclay-java -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -i -O--buildsystem=gradle dh_installdeb -i -O--buildsystem=gradle install -d debian/libbarclay-java/DEBIAN rm -f debian/libbarclay-java.debhelper.log debian/rules override_dh_gencontrol make[1]: Entering directory '/build/barclay-aFzE4C/barclay-2.1.0' cat debian/control \ | sed -e '/^Build-.*Depends:/,/^[^[:space:]#]/{s/^Build-.*Depends:/ /;p};d' \ | grep '^[[:space:]]' \ | tr ',' '\n' \ > debian/bd-temp-substvars echo -n "bd:barclay-java=" > debian/bd.substvars grep 'libbarclay-java ' debian/bd-temp-substvars \ | tr "\n" "," \ | sed -e 's/[[:space:]]\+/ /g;s/,$/\n/' \ >> debian/bd.substvars dh_gencontrol -O--buildsystem=gradle -- -Tdebian/bd.substvars echo misc:Depends= >> debian/libbarclay-java.substvars echo misc:Pre-Depends= >> debian/libbarclay-java.substvars dpkg-gencontrol -plibbarclay-java -ldebian/changelog -Tdebian/libbarclay-java.substvars -Pdebian/libbarclay-java -Tdebian/bd.substvars dpkg-gencontrol: warning: Depends field of package libbarclay-java: substitution variable ${maven:Depends} used, but is not defined dpkg-gencontrol: warning: package libbarclay-java: substitution variable ${java:Depends} unused, but is defined chmod 0644 -- debian/libbarclay-java/DEBIAN/control chown 0:0 -- debian/libbarclay-java/DEBIAN/control make[1]: Leaving directory '/build/barclay-aFzE4C/barclay-2.1.0' dh_md5sums -i -O--buildsystem=gradle cd debian/libbarclay-java >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libbarclay-java/DEBIAN/md5sums chown 0:0 -- debian/libbarclay-java/DEBIAN/md5sums dh_builddeb -i -O--buildsystem=gradle dpkg-deb --build debian/libbarclay-java .. dpkg-deb: building package 'libbarclay-java' in '../libbarclay-java_2.1.0-3.1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../barclay_2.1.0-3.1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/barclay-aFzE4C /tmp/barclay-2.1.0-3.1ihaa1u4t I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_builduser W: deleting files in /tmp: org.broadinstitute.barclay.help.BashTabCompletionDoclet5557369393401410407 W: deleting files in /tmp: org.broadinstitute.barclay.help.HelpDoclet8259359201219297503 W: deleting files in /tmp: org.broadinstitute.barclay.help.HelpDoclet11445293112699743215 W: deleting files in /tmp: org.broadinstitute.barclay.help.HelpDoclet4334769755709965855 W: deleting files in /tmp: org.broadinstitute.barclay.help.BashTabCompletionDoclet15327456681766025613 W: deleting files in /tmp: gradle-worker-classpath17346570112306964072txt W: deleting files in /tmp: org.broadinstitute.barclay.help.BashTabCompletionDoclet17784824589852462567 W: deleting files in /tmp: hsperfdata_root W: deleting files in /tmp: org.broadinstitute.barclay.help.HelpDoclet1080469369782947317 W: deleting files in /tmp: org.broadinstitute.barclay.help.testdoclets.TestDoclet17046177205978683352 I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.WgFmsD3ajH... I: success in 1115.2061 seconds md5: libbarclay-java_2.1.0-3.1_all.deb: OK sha1: libbarclay-java_2.1.0-3.1_all.deb: OK sha256: libbarclay-java_2.1.0-3.1_all.deb: OK Checksums: OK