Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/b/bamtools/bamtools_2.5.1+dfsg-9_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/bamtools-2.5.1+dfsg-9cq5k9bth/bamtools_2.5.1+dfsg-9_amd64.buildinfo Get source package info: bamtools=2.5.1+dfsg-9 Source URL: http://snapshot.notset.fr/mr/package/bamtools/2.5.1+dfsg-9/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 apt=2.2.3 autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11.1 base-passwd=3.5.49 bash=5.1-2+b1 binutils=2.35.2-2 binutils-common=2.35.2-2 binutils-x86-64-linux-gnu=2.35.2-2 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 cmake=3.18.4-2 cmake-data=3.18.4-2 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 d-shlibs=0.98 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.76 debhelper=13.3.4 debian-archive-keyring=2021.1.1 debianutils=4.11.2 dh-autoreconf=20 dh-strip-nondeterminism=1.11.0-1 diffutils=1:3.7-5 doxygen=1.9.1-2 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 gpgv=2.2.27-1 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-4 help2man=1.48.3 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libapt-pkg6.0=2.2.3 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2+b1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.2-2 libblkid1=2.36.1-7 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-11 libc-dev-bin=2.31-11 libc6=2.31-11 libc6-dev=2.31-11 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libclang-cpp11=1:11.0.1-2 libclang1-11=1:11.0.1-2 libcom-err2=1.46.2-1 libcrypt-dev=1:4.4.18-2 libcrypt1=1:4.4.18-2 libctf-nobfd0=2.35.2-2 libctf0=2.35.2-2 libcurl4=7.74.0-1.2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.257 libdebhelper-perl=13.3.4 libdpkg-perl=1.20.9 libedit2=3.1-20191231-2+b1 libelf1=0.183-3 libexpat1=2.2.10-2 libffi7=3.3-6 libfile-stripnondeterminism-perl=1.11.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-3 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.1-3 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-5 libhogweed6=3.7.2-3 libicu67=67.1-6 libidn2-0=2.3.0-5 libisl23=0.23-1 libitm1=10.2.1-6 libjsoncpp-dev=1.9.4-4 libjsoncpp24=1.9.4-4 libk5crypto3=1.18.3-5 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-5 libkrb5support0=1.18.3-5 libldap-2.4-2=2.4.57+dfsg-2 libllvm11=1:11.0.1-2 liblocale-gettext-perl=1.07-4+b1 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-3 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnettle8=3.7.2-3 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-7 libpam-modules-bin=1.4.0-7 libpam-runtime=1.4.0-7 libpam0g=1.4.0-7 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-3 libpipeline1=1.5.3-1 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libquadmath0=10.2.1-6 librhash0=1.4.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsepol1=3.1-1 libsigsegv2=2.13-1 libsmartcols1=2.36.1-7 libssh2-1=1.9.0-3 libssl1.1=1.1.1k-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.3-5 libtasn1-6=4.16.0-2 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-5 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libuv1=1.40.0-1 libxapian30=1.4.18-3 libxml2=2.9.10+dfsg-6.3+b1 libxxhash0=0.8.0-2 libz3-4=4.8.10-1 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.28-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 passwd=1:4.8.1-1 patch=2.7.6-7 perl=5.32.1-3 perl-base=5.32.1-3 perl-modules-5.32=5.32.1-3 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-6 tar=1.34+dfsg-1 util-linux=2.36.1-7 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210417T032148Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d bamtools=2.5.1+dfsg-9 && mkdir -p /build/bamtools-zH4SDz && dpkg-source --no-check -x /*.dsc /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg && chown -R builduser:builduser /build/bamtools-zH4SDz" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1618514916" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/bamtools-zH4SDz /tmp/bamtools-2.5.1+dfsg-9cq5k9bth bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210417T032148Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.SavXUifIHT as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.SavXUifIHT Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210417T032148Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210417T032148Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (797 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4668 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-11) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210417T032148Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.SavXUifIHT Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210417T032148Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1146 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.SavXUifIHT I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d bamtools=2.5.1+dfsg-9 && mkdir -p /build/bamtools-zH4SDz && dpkg-source --no-check -x /*.dsc /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg && chown -R builduser:builduser /build/bamtools-zH4SDz"' exec /tmp/mmdebstrap.SavXUifIHT Reading package lists... NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bamtools.git Please use: git clone https://salsa.debian.org/med-team/bamtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 211 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main bamtools 2.5.1+dfsg-9 (dsc) [2388 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main bamtools 2.5.1+dfsg-9 (tar) [197 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main bamtools 2.5.1+dfsg-9 (diff) [11.8 kB] Fetched 211 kB in 0s (1105 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'bamtools_2.5.1+dfsg-9.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting bamtools in /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg dpkg-source: info: unpacking bamtools_2.5.1+dfsg.orig.tar.gz dpkg-source: info: unpacking bamtools_2.5.1+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying doxygen-tweak dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch dpkg-source: info: applying 0006-Doxygen-reproducibility dpkg-source: info: applying 0008_Cmake_Test.patch dpkg-source: info: applying spelling dpkg-source: info: applying tiddit.patch dpkg-source: info: applying shared_and_static.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1618514916" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.SavXUifIHT dpkg-buildpackage: info: source package bamtools dpkg-buildpackage: info: source version 2.5.1+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:22 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Checking for one of the modules 'jsoncpp>=1' Did NOT find system JsonCpp, instead using bundled version -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu dh_auto_build -a cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg -B/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/api/CMakeFiles/BamTools_static.dir/build.make src/api/CMakeFiles/BamTools_static.dir/depend make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make[3]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/BamTools_static.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= Dependee "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/BamTools_static.dir/DependInfo.cmake" is newer than depender "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/BamTools_static.dir/depend.internal". Dependee "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake" is newer than depender "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/BamTools.dir/depend.internal". Dependee "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/BamTools.dir/depend.internal". Dependee "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/BamTools_static.dir/depend.internal". Scanning dependencies of target BamTools make[3]: Leaving directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build Scanning dependencies of target BamTools_static make[3]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/api/CMakeFiles/BamTools_static.dir/build.make src/api/CMakeFiles/BamTools_static.dir/build make[3]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o [ 2%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamAlignment.cpp.o [ 3%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ 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src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 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-I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp [ 7%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamMultiReader.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/BamMultiReader.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp [ 8%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp [ 9%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. 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-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp [ 15%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamWriter.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/BamWriter.cpp.o -c 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Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp [ 20%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE 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src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/bam/BamWriter_p.cpp [ 23%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamProgramChain.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/index/BamToolsIndex_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp [ 42%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp [ 43%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamFile_p.cpp.o cd 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CMakeFiles/BamTools_static.dir/internal/io/BamHttp_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/BamHttp_p.cpp [ 48%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/BamPipe_p.cpp [ 50%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS 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/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp [ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp [ 56%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HostInfo_p.cpp /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function ‘void BamTools::Internal::HostAddress::Clear()’: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:273:49: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct BamTools::Internal::IPv6Address’; use assignment or value-initialization instead [-Wclass-memaccess] 273 | memset(&m_ip6Address, 0, sizeof(IPv6Address)); | ^ In file included from /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:10: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.h:31:8: note: ‘struct BamTools::Internal::IPv6Address’ declared here 31 | struct IPv6Address | ^~~~~~~~~~~ /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function ‘void BamTools::Internal::HostAddress::Clear()’: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:273:49: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct BamTools::Internal::IPv6Address’; use assignment or value-initialization instead [-Wclass-memaccess] 273 | memset(&m_ip6Address, 0, sizeof(IPv6Address)); | ^ In file included from /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:10: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.h:31:8: note: ‘struct BamTools::Internal::IPv6Address’ declared here 31 | struct IPv6Address | ^~~~~~~~~~~ [ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HostInfo_p.cpp [ 58%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HttpHeader_p.cpp [ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/HttpHeader_p.cpp [ 60%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp [ 61%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp [ 62%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocket_p.cpp [ 63%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp [ 64%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp [ 65%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp [ 66%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp [ 67%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp [ 68%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp [ 69%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp [ 70%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocket_p.cpp [ 71%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp [ 72%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp [ 73%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp [ 74%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp [ 75%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/utils/BamException_p.cpp [ 76%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp [ 77%] Linking CXX shared library libbamtools.so cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbamtools.so.2.5.1 -o libbamtools.so.2.5.1 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz [ 78%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api/internal/utils/BamException_p.cpp cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.1 libbamtools.so.2.5.1 libbamtools.so make[3]: Leaving directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 78%] Built target BamTools make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/utils /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color= Dependee "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake" is newer than depender "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/depend.internal". Dependee "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/depend.internal". Scanning dependencies of target BamTools-utils make[3]: Leaving directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build make[3]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c 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-c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/toolkit/bamtools_revert.cpp [ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/toolkit/bamtools_sort.cpp [ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/toolkit/bamtools_split.cpp [ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/toolkit/bamtools_stats.cpp [ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/api -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/utils -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/src/toolkit/bamtools.cpp [100%] Linking CXX executable bamtools cd /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o bamtools -Wl,-rpath,/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api: ../utils/libbamtools-utils.a -ljsoncpp ../api/libbamtools.so.2.5.1 make[3]: Leaving directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [100%] Built target bamtools_cmd make[2]: Leaving directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg' cd obj-* && ln -s src/toolkit/ bin dh_auto_test --arch cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 make[2]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j4 Test project /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu Start 1: bamtools_help Start 2: bamtools_stats 1/2 Test #1: bamtools_help .................... Passed 0.01 sec 2/2 Test #2: bamtools_stats ................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 0.09 sec make[2]: Leaving directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/bamtools-zH4SDz/bamtools-2.5.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg -B/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/bamtools-1.pc -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.1 -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.a -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h -- Installing: /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools -- Set runtime path of "/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools" to "" make[1]: Leaving directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg' dh_install --arch d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbamtools-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbamtools2.5.1/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.a debian/libbamtools-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so debian/libbamtools-dev/usr/lib/x86_64-linux-gnu mv /build/bamtools-zH4SDz/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.1 debian/libbamtools2.5.1/usr/lib/x86_64-linux-gnu PKGDEV=libbamtools-dev PKGSHL=libbamtools2.5.1 install -d -m 755 debian/libbamtools-dev/usr/include mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include install -d -m 755 debian/libbamtools-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libbamtools-dev/usr/lib/x86_64-linux-gnu/pkgconfig make[1]: Leaving directory '/build/bamtools-zH4SDz/bamtools-2.5.1+dfsg' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package libbamtools-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'bamtools' in '../bamtools_2.5.1+dfsg-9_amd64.deb'. dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.1+dfsg-9_amd64.deb'. dpkg-deb: building package 'libbamtools2.5.1-dbgsym' in '../libbamtools2.5.1-dbgsym_2.5.1+dfsg-9_amd64.deb'. dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.5.1+dfsg-9_amd64.deb'. dpkg-deb: building package 'libbamtools2.5.1' in '../libbamtools2.5.1_2.5.1+dfsg-9_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../bamtools_2.5.1+dfsg-9_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/bamtools-zH4SDz /tmp/bamtools-2.5.1+dfsg-9cq5k9bth I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.SavXUifIHT... I: success in 771.8817 seconds md5: bamtools-dbgsym_2.5.1+dfsg-9_amd64.deb: OK md5: bamtools_2.5.1+dfsg-9_amd64.deb: OK md5: libbamtools-dev_2.5.1+dfsg-9_amd64.deb: OK md5: libbamtools2.5.1-dbgsym_2.5.1+dfsg-9_amd64.deb: OK md5: libbamtools2.5.1_2.5.1+dfsg-9_amd64.deb: OK sha1: bamtools-dbgsym_2.5.1+dfsg-9_amd64.deb: OK sha1: bamtools_2.5.1+dfsg-9_amd64.deb: OK sha1: libbamtools-dev_2.5.1+dfsg-9_amd64.deb: OK sha1: libbamtools2.5.1-dbgsym_2.5.1+dfsg-9_amd64.deb: OK sha1: libbamtools2.5.1_2.5.1+dfsg-9_amd64.deb: OK sha256: bamtools-dbgsym_2.5.1+dfsg-9_amd64.deb: OK sha256: bamtools_2.5.1+dfsg-9_amd64.deb: OK sha256: libbamtools-dev_2.5.1+dfsg-9_amd64.deb: OK sha256: libbamtools2.5.1-dbgsym_2.5.1+dfsg-9_amd64.deb: OK sha256: libbamtools2.5.1_2.5.1+dfsg-9_amd64.deb: OK Checksums: OK