Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/a/avogadro/avogadro_1.93.0-2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/avogadro-1.93.0-27s2g6p3z/avogadro_1.93.0-2_amd64.buildinfo Get source package info: avogadro=1.93.0-2 Source URL: http://snapshot.notset.fr/mr/package/avogadro/1.93.0-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-6 binutils=2.34-6 binutils-common=2.34-6 binutils-x86-64-linux-gnu=2.34-6 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.8 bzip2=1.0.8-2 cmake=3.16.3-2 cmake-data=3.16.3-2 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.3.0-10 dash=0.5.10.2-7 debconf=1.5.74 debhelper=13 debianutils=4.9.1 dh-autoreconf=19 dh-strip-nondeterminism=1.8.0-1 diffutils=1:3.7-3 doxygen=1.8.16-2 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-5 fdisk=2.34-0.1 file=1:5.38-4 findutils=4.7.0-1 fontconfig=2.13.1-4 fontconfig-config=2.13.1-4 fonts-dejavu-core=2.37-1 g++=4:9.2.1-3.1 g++-9=9.3.0-10 gcc=4:9.2.1-3.1 gcc-10-base=10-20200418-1 gcc-9=9.3.0-10 gcc-9-base=9.3.0-10 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.4-1 groff-base=1.22.4-4 gzip=1.10-2 hdf5-helpers=1.10.6+repack-1 hostname=3.23 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-7 libaec-dev=1.0.4-1 libaec0=1.0.4-1 libarchive-zip-perl=1.68-1 libarchive13=3.4.0-2 libasan5=9.3.0-10 libatomic1=10-20200418-1 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libavahi-client3=0.7-5 libavahi-common-data=0.7-5 libavahi-common3=0.7-5 libavogadro-dev=1.93.0-3+b2 libavogadro2-1=1.93.0-3+b2 libbinutils=2.34-6 libblkid1=2.34-0.1 libboost-iostreams1.67.0=1.67.0-17+b1 libbrotli1=1.0.7-6+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libc-bin=2.30-4 libc-dev-bin=2.30-4 libc6=2.30-4 libc6-dev=2.30-4 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2.1+b2 libcc1-0=10-20200418-1 libclang1-9=1:9.0.1-12 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.16-1 libcrypt1=1:4.4.16-1 libctf-nobfd0=2.34-6 libctf0=2.34-6 libcups2=2.3.1-11 libcurl4=7.68.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.16-2 libdebconfclient0=0.251 libdebhelper-perl=13 libdouble-conversion3=3.1.5-5 libdpkg-perl=1.19.7 libdrm-amdgpu1=2.4.101-2 libdrm-common=2.4.101-2 libdrm-intel1=2.4.101-2 libdrm-nouveau2=2.4.101-2 libdrm-radeon1=2.4.101-2 libdrm2=2.4.101-2 libedit2=3.1-20191231-1 libegl-dev=1.3.1-1 libegl-mesa0=20.0.4-2 libegl1=1.3.1-1 libeigen3-dev=3.3.7-2 libelf1=0.176-1.1 libevdev2=1.9.0+dfsg-1 libexpat1=2.2.9-1 libfdisk1=2.34-0.1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.8.0-1 libfontconfig1=2.13.1-4 libfreetype6=2.10.1-2 libgbm1=20.0.4-2 libgcc-9-dev=9.3.0-10 libgcc-s1=10-20200418-1 libgcrypt20=1.8.5-5 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgfortran5=10-20200418-1 libgl-dev=1.3.1-1 libgl1=1.3.1-1 libgl1-mesa-dev=20.0.4-2 libgl1-mesa-dri=20.0.4-2 libgl2ps-dev=1.4.2+dfsg1-1 libgl2ps1.4=1.4.2+dfsg1-1 libglapi-mesa=20.0.4-2 libgles-dev=1.3.1-1 libgles1=1.3.1-1 libgles2=1.3.1-1 libglew-dev=2.1.0-4+b1 libglew2.1=2.1.0-4+b1 libglib2.0-0=2.64.2-1 libglu1-mesa=9.0.1-1 libglu1-mesa-dev=9.0.1-1 libglvnd-dev=1.3.1-1 libglvnd0=1.3.1-1 libglx-dev=1.3.1-1 libglx-mesa0=20.0.4-2 libglx0=1.3.1-1 libgmp10=2:6.2.0+dfsg-4 libgnutls30=3.6.13-2 libgomp1=10-20200418-1 libgpg-error0=1.37-1 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.17-7 libgudev-1.0-0=233-1 libharfbuzz0b=2.6.4-1 libhdf5-103-1=1.10.6+repack-1 libhdf5-cpp-103-1=1.10.6+repack-1 libhdf5-dev=1.10.6+repack-1 libhdf5-fortran-102=1.10.6+repack-1 libhdf5-hl-100=1.10.6+repack-1 libhdf5-hl-cpp-100=1.10.6+repack-1 libhdf5-hl-fortran-100=1.10.6+repack-1 libhogweed5=3.5.1+really3.5.1-2 libice6=2:1.0.9-2 libicu63=63.2-3 libidn2-0=2.3.0-1 libinput-bin=1.15.5-1 libinput10=1.15.5-1 libisl22=0.22.1-1 libitm1=10-20200418-1 libjpeg-dev=1:1.5.2-2 libjpeg62-turbo=1:1.5.2-2+b1 libjpeg62-turbo-dev=1:1.5.2-2+b1 libjsoncpp1=1.7.4-3.1 libk5crypto3=1.17-7 libkeyutils1=1.6.1-2 libkrb5-3=1.17-7 libkrb5support0=1.17-7 libldap-2.4-2=2.4.49+dfsg-4 libldap-common=2.4.49+dfsg-4 libllvm10=1:10.0.0-4 libllvm9=1:9.0.1-12 liblsan0=10-20200418-1 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmaeparser1=1.2.3-3 libmagic-mgc=1:5.38-4 libmagic1=1:5.38-4 libmount1=2.34-0.1 libmpc3=1.1.0-1 libmpfr6=4.0.2-1 libmtdev1=1.1.5-1.1 libncurses6=6.2-1 libncursesw6=6.2-1 libnettle7=3.5.1+really3.5.1-2 libnghttp2-14=1.40.0-1 libopenbabel-dev=3.0.0+dfsg-4 libopenbabel6=3.0.0+dfsg-4 libopengl-dev=1.3.1-1 libopengl0=1.3.1-1 libp11-kit0=0.23.20-1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpciaccess0=0.14-1 libpcre2-16-0=10.34-7 libpcre2-8-0=10.34-7 libpcre3=2:8.39-12+b1 libperl5.30=5.30.0-10 libpipeline1=1.5.2-2 libpixman-1-0=0.36.0-1 libpng16-16=1.6.37-2 libprocps8=2:3.3.16-4 libpsl5=0.21.0-1 libpthread-stubs0-dev=0.4-1 libqt5concurrent5=5.12.5+dfsg-10 libqt5core5a=5.12.5+dfsg-10 libqt5dbus5=5.12.5+dfsg-10 libqt5gui5=5.12.5+dfsg-10 libqt5network5=5.12.5+dfsg-10 libqt5printsupport5=5.12.5+dfsg-10 libqt5sql5=5.12.5+dfsg-10 libqt5test5=5.12.5+dfsg-10 libqt5widgets5=5.12.5+dfsg-10 libqt5xml5=5.12.5+dfsg-10 libquadmath0=10-20200418-1 librhash0=1.3.9-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.4.3-1+b1 libselinux1=3.0-1+b3 libsensors-config=1:3.6.0-2 libsensors5=1:3.6.0-2 libsigsegv2=2.12-2 libsm6=2:1.2.3-1 libsmartcols1=2.34-0.1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1g-1 libstdc++-9-dev=9.3.0-10 libstdc++6=10-20200418-1 libsub-override-perl=0.09-2 libsymspg-dev=1.15.0-1 libsymspg1=1.15.0-1 libsystemd0=245.5-1 libsz2=1.0.4-1 libtasn1-6=4.16.0-2 libtinfo6=6.2-1 libtool=2.4.6-14 libtsan0=10-20200418-1 libubsan1=10-20200418-1 libuchardet0=0.0.6-3 libudev1=245.5-1 libunistring2=0.9.10-2 libuuid1=2.34-0.1 libuv1=1.35.0-2 libvulkan-dev=1.2.135.0-2 libvulkan1=1.2.135.0-2 libwacom-common=1.3-2 libwacom2=1.3-2 libwayland-client0=1.18.0-1 libwayland-server0=1.18.0-1 libx11-6=2:1.6.9-2 libx11-data=2:1.6.9-2 libx11-dev=2:1.6.9-2 libx11-xcb1=2:1.6.9-2 libxapian30=1.4.15-1 libxau-dev=1:1.0.8-1+b2 libxau6=1:1.0.8-1+b2 libxcb-dri2-0=1.14-2 libxcb-dri3-0=1.14-2 libxcb-glx0=1.14-2 libxcb-icccm4=0.4.1-1.1 libxcb-image0=0.4.0-1+b2 libxcb-keysyms1=0.4.0-1+b2 libxcb-present0=1.14-2 libxcb-randr0=1.14-2 libxcb-render-util0=0.3.9-1+b1 libxcb-render0=1.14-2 libxcb-shape0=1.14-2 libxcb-shm0=1.14-2 libxcb-sync1=1.14-2 libxcb-util0=0.3.8-3+b2 libxcb-xfixes0=1.14-2 libxcb-xinerama0=1.14-2 libxcb-xinput0=1.14-2 libxcb-xkb1=1.14-2 libxcb1=1.14-2 libxcb1-dev=1.14-2 libxdamage1=1:1.1.5-2 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext-dev=2:1.3.3-1+b2 libxext6=2:1.3.3-1+b2 libxfixes3=1:5.0.3-2 libxkbcommon-x11-0=0.10.0-1 libxkbcommon0=0.10.0-1 libxml2=2.9.10+dfsg-5 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.7-4 libzstd1=1.4.4+dfsg-3 linux-libc-dev=5.5.17-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-1.2 man-db=2.9.1-1 mawk=1.3.4.20200120-2 ncurses-base=6.2-1 ncurses-bin=6.2-1 openbabel=3.0.0+dfsg-4 patch=2.7.6-6 perl=5.30.0-10 perl-base=5.30.0-10 perl-modules-5.30=5.30.0-10 pkg-config=0.29.2-1 po-debconf=1.0.21 procps=2:3.3.16-4 qt5-qmake=5.12.5+dfsg-10 qt5-qmake-bin=5.12.5+dfsg-10 qtbase5-dev=5.12.5+dfsg-10 qtbase5-dev-tools=5.12.5+dfsg-10 qtchooser=66-2 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-3 tar=1.30+dfsg-7 ucf=3.0038+nmu1 util-linux=2.34-0.1 x11-common=1:7.7+20 x11proto-core-dev=2020.1-1 x11proto-dev=2020.1-1 x11proto-xext-dev=2020.1-1 xkb-data=2.29-2 xorg-sgml-doctools=1:1.11-1 xtrans-dev=1.4.0-1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200425T031815Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d avogadro=1.93.0-2 && mkdir -p /build/avogadro-lcDMJH && dpkg-source --no-check -x /*.dsc /build/avogadro-lcDMJH/avogadro-1.93.0 && chown -R builduser:builduser /build/avogadro-lcDMJH" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/avogadro-lcDMJH/avogadro-1.93.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1587715526" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/avogadro-lcDMJH /tmp/avogadro-1.93.0-27s2g6p3z bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200425T031815Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.qr8x0uzR51 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.qr8x0uzR51 Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200425T031815Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200425T031815Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (722 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4504 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.30-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200425T031815Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.qr8x0uzR51 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20200425T031815Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 21s (1068 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.qr8x0uzR51 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d avogadro=1.93.0-2 && mkdir -p /build/avogadro-lcDMJH && dpkg-source --no-check -x /*.dsc /build/avogadro-lcDMJH/avogadro-1.93.0 && chown -R builduser:builduser /build/avogadro-lcDMJH"' exec /tmp/mmdebstrap.qr8x0uzR51 Reading package lists... NOTICE: 'avogadro' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/avogadro.git Please use: git clone https://salsa.debian.org/debichem-team/avogadro.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2921 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main avogadro 1.93.0-2 (dsc) [2079 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main avogadro 1.93.0-2 (tar) [2905 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main avogadro 1.93.0-2 (diff) [13.6 kB] Fetched 2921 kB in 2s (1210 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'avogadro_1.93.0-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting avogadro in /build/avogadro-lcDMJH/avogadro-1.93.0 dpkg-source: info: unpacking avogadro_1.93.0.orig.tar.gz dpkg-source: info: unpacking avogadro_1.93.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying probe-X11-paths-with-find_package.patch dpkg-source: info: applying active_widget_37960b3.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/avogadro-lcDMJH/avogadro-1.93.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1587715526" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.qr8x0uzR51 dpkg-buildpackage: info: source package avogadro dpkg-buildpackage: info: source version 1.93.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0' dh_clean conf.log conf.pri make[1]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0' dh_auto_configure -- \ -DCMAKE_SKIP_RPATH=TRUE \ -DAvogadro_ENABLE_RPC=OFF \ -DBUILD_DOCUMENTATION=ON \ -DChemData_SOURCE_DIR=/build/avogadro-lcDMJH/avogadro-1.93.0 \ -DChemData_BINARY_DIR=/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_AUTOGEN_VERBOSE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_SKIP_RPATH=TRUE -DAvogadro_ENABLE_RPC=OFF -DBUILD_DOCUMENTATION=ON -DChemData_SOURCE_DIR=/build/avogadro-lcDMJH/avogadro-1.93.0 -DChemData_BINARY_DIR=/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu .. -- The C compiler identification is GNU 9.3.0 -- The CXX compiler identification is GNU 9.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could not use git to determine source version, using version 1.93.0 -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.6") found components: C -- Found Doxygen: /usr/bin/doxygen (found version "1.8.16") found components: doxygen missing components: dot -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/avogadro-lcDMJH/avogadro-1.93.0 -B/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/CMakeFiles /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' make -f avogadro/CMakeFiles/avogadro_autogen.dir/build.make avogadro/CMakeFiles/avogadro_autogen.dir/depend make[4]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-lcDMJH/avogadro-1.93.0 /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/CMakeFiles/avogadro_autogen.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro_autogen make[4]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' make -f avogadro/CMakeFiles/avogadro_autogen.dir/build.make avogadro/CMakeFiles/avogadro_autogen.dir/build make[4]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' [ 7%] Automatic MOC for target avogadro cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/bin/cmake -E cmake_autogen /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/CMakeFiles/avogadro_autogen.dir/AutogenInfo.json None AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.16/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -I/usr/include -I/usr/include/c++/9 -I/usr/include/x86_64-linux-gnu/c++/9 -I/usr/include/c++/9/backward -I/usr/lib/gcc/x86_64-linux-gnu/9/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Parsing "SRC:/avogadro/aboutdialog.h" AutoGen: Parsing "SRC:/avogadro/backgroundfileformat.h" AutoGen: Parsing "SRC:/avogadro/mainwindow.h" AutoGen: Parsing "SRC:/avogadro/application.h" AutoGen: Parsing "SRC:/avogadro/viewfactory.h" AutoGen: Parsing "SRC:/avogadro/aboutdialog.cpp" AutoGen: Parsing "SRC:/avogadro/menubuilder.h" AutoGen: Parsing "SRC:/avogadro/backgroundfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/menubuilder.cpp" AutoGen: Parsing "SRC:/avogadro/avogadro.cpp" AutoGen: Parsing "SRC:/avogadro/mainwindow.cpp" AutoGen: Parsing "SRC:/avogadro/application.cpp" AutoGen: Parsing "SRC:/avogadro/viewfactory.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/EWIEGA46WW/moc_mainwindow.cpp", because it doesn't exist, from "SRC:/avogadro/mainwindow.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -I/usr/include -I/usr/include/c++/9 -I/usr/include/x86_64-linux-gnu/c++/9 -I/usr/include/c++/9/backward -I/usr/lib/gcc/x86_64-linux-gnu/9/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/moc_predefs.h -p avogadro -o /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/EWIEGA46WW/moc_mainwindow.cpp /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/EWIEGA46WW/moc_application.cpp", because it doesn't exist, from "SRC:/avogadro/application.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -I/usr/include -I/usr/include/c++/9 -I/usr/include/x86_64-linux-gnu/c++/9 -I/usr/include/c++/9/backward -I/usr/lib/gcc/x86_64-linux-gnu/9/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/moc_predefs.h -p avogadro -o /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/EWIEGA46WW/moc_application.cpp /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/application.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/EWIEGA46WW/moc_menubuilder.cpp", because it doesn't exist, from "SRC:/avogadro/menubuilder.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -I/usr/include -I/usr/include/c++/9 -I/usr/include/x86_64-linux-gnu/c++/9 -I/usr/include/c++/9/backward -I/usr/lib/gcc/x86_64-linux-gnu/9/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/moc_predefs.h -p avogadro -o /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/EWIEGA46WW/moc_menubuilder.cpp /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/menubuilder.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp", because it doesn't exist, from "SRC:/avogadro/backgroundfileformat.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -I/usr/include -I/usr/include/c++/9 -I/usr/include/x86_64-linux-gnu/c++/9 -I/usr/include/c++/9/backward -I/usr/lib/gcc/x86_64-linux-gnu/9/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/moc_predefs.h -p avogadro -o /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/backgroundfileformat.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/EWIEGA46WW/moc_aboutdialog.cpp", because it doesn't exist, from "SRC:/avogadro/aboutdialog.h" /usr/lib/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -I/usr/include/eigen3 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtConcurrent -I/usr/include -I/usr/include/c++/9 -I/usr/include/x86_64-linux-gnu/c++/9 -I/usr/include/c++/9/backward -I/usr/lib/gcc/x86_64-linux-gnu/9/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/moc_predefs.h -p avogadro -o /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/EWIEGA46WW/moc_aboutdialog.cpp /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/aboutdialog.h AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/avogadro/CMakeFiles/avogadro_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/avogadro/CMakeFiles/avogadro_autogen.dir/AutogenUsed.txt" make[4]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' [ 7%] Built target avogadro_autogen make -f avogadro/CMakeFiles/avogadro.dir/build.make avogadro/CMakeFiles/avogadro.dir/depend make[4]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' [ 14%] Generating ui_aboutdialog.h cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/lib/qt5/bin/uic -o /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/ui_aboutdialog.h /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/aboutdialog.ui [ 21%] Generating ui_mainwindow.h cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/lib/qt5/bin/uic -o /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/ui_mainwindow.h /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.ui [ 28%] Generating qrc_avogadro.cpp cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/lib/qt5/bin/rcc --name avogadro --output /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/qrc_avogadro.cpp /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/avogadro.qrc cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-lcDMJH/avogadro-1.93.0 /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/CMakeFiles/avogadro.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro make[4]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' make -f avogadro/CMakeFiles/avogadro.dir/build.make avogadro/CMakeFiles/avogadro.dir/build make[4]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' [ 35%] Building CXX object avogadro/CMakeFiles/avogadro.dir/avogadro_autogen/mocs_compilation.cpp.o cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/include -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/build/avogadro-lcDMJH/avogadro-1.93.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -o CMakeFiles/avogadro.dir/avogadro_autogen/mocs_compilation.cpp.o -c /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/mocs_compilation.cpp [ 42%] Building CXX object avogadro/CMakeFiles/avogadro.dir/aboutdialog.cpp.o cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/include -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/build/avogadro-lcDMJH/avogadro-1.93.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -o CMakeFiles/avogadro.dir/aboutdialog.cpp.o -c /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/aboutdialog.cpp [ 50%] Building CXX object avogadro/CMakeFiles/avogadro.dir/application.cpp.o cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/include -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/build/avogadro-lcDMJH/avogadro-1.93.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -o CMakeFiles/avogadro.dir/application.cpp.o -c /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/application.cpp [ 57%] Building CXX object avogadro/CMakeFiles/avogadro.dir/avogadro.cpp.o cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/include -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/build/avogadro-lcDMJH/avogadro-1.93.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -o CMakeFiles/avogadro.dir/avogadro.cpp.o -c /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/avogadro.cpp [ 64%] Building CXX object avogadro/CMakeFiles/avogadro.dir/backgroundfileformat.cpp.o cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/include -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/build/avogadro-lcDMJH/avogadro-1.93.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -o CMakeFiles/avogadro.dir/backgroundfileformat.cpp.o -c /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/backgroundfileformat.cpp [ 71%] Building CXX object avogadro/CMakeFiles/avogadro.dir/mainwindow.cpp.o cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/include -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/build/avogadro-lcDMJH/avogadro-1.93.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -o CMakeFiles/avogadro.dir/mainwindow.cpp.o -c /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.cpp [ 78%] Building CXX object avogadro/CMakeFiles/avogadro.dir/menubuilder.cpp.o cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/include -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/build/avogadro-lcDMJH/avogadro-1.93.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -o CMakeFiles/avogadro.dir/menubuilder.cpp.o -c /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/menubuilder.cpp [ 85%] Building CXX object avogadro/CMakeFiles/avogadro.dir/viewfactory.cpp.o cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/include -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/build/avogadro-lcDMJH/avogadro-1.93.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -o CMakeFiles/avogadro.dir/viewfactory.cpp.o -c /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/viewfactory.cpp [ 92%] Building CXX object avogadro/CMakeFiles/avogadro.dir/qrc_avogadro.cpp.o cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/bin/c++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/avogadro_autogen/include -I/build/avogadro-lcDMJH/avogadro-1.93.0 -I/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro -isystem /usr/include/eigen3 -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtConcurrent -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/build/avogadro-lcDMJH/avogadro-1.93.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -o CMakeFiles/avogadro.dir/qrc_avogadro.cpp.o -c /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/qrc_avogadro.cpp [100%] Linking CXX executable ../bin/avogadro2 cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro.dir/link.txt --verbose=1 /usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/build/avogadro-lcDMJH/avogadro-1.93.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -rdynamic CMakeFiles/avogadro.dir/avogadro_autogen/mocs_compilation.cpp.o CMakeFiles/avogadro.dir/aboutdialog.cpp.o CMakeFiles/avogadro.dir/application.cpp.o CMakeFiles/avogadro.dir/avogadro.cpp.o CMakeFiles/avogadro.dir/backgroundfileformat.cpp.o CMakeFiles/avogadro.dir/mainwindow.cpp.o CMakeFiles/avogadro.dir/menubuilder.cpp.o CMakeFiles/avogadro.dir/viewfactory.cpp.o CMakeFiles/avogadro.dir/qrc_avogadro.cpp.o -o ../bin/avogadro2 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.12.5 /usr/lib/x86_64-linux-gnu/libQt5Concurrent.so.5.12.5 /usr/lib/x86_64-linux-gnu/libAvogadroQtOpenGL.so.1.93.0 /usr/lib/x86_64-linux-gnu/libAvogadroQtPlugins.so.1.93.0 /usr/lib/x86_64-linux-gnu/libAvogadroRendering.so.1.93.0 /usr/lib/x86_64-linux-gnu/libGLEW.so /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libAvogadroQtGui.so.1.93.0 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.12.5 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.12.5 /usr/lib/x86_64-linux-gnu/libAvogadroIO.so.1.93.0 /usr/lib/x86_64-linux-gnu/libAvogadroCore.so.1.93.0 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.12.5 make[4]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' [100%] Built target avogadro make[3]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' cd obj-x86_64-linux-gnu; make documentation make[2]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/avogadro-lcDMJH/avogadro-1.93.0 -B/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu --check-build-system 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/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/docs /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/docs/CMakeFiles/documentation.dir/DependInfo.cmake --color= Scanning dependencies of target documentation make[5]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' make -f docs/CMakeFiles/documentation.dir/build.make docs/CMakeFiles/documentation.dir/build make[5]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/docs && /usr/bin/cmake -E remove_directory /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/docs/html cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/docs && /usr/bin/doxygen /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/docs/doxyfile warning: Tag 'SYMBOL_CACHE_SIZE' at line 290 of file 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Otherwise you run the risk that the wrong font is being used for dot generated graphs. warning: source images is not a readable file or directory... skipping. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/application.h:39: warning: Compound Avogadro::Application is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/menubuilder.h:42: warning: Compound Avogadro::MenuBuilder is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/aboutdialog.h:28: warning: Compound Avogadro::AboutDialog is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/viewfactory.h:37: warning: Compound Avogadro::ViewFactory is not documented. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro Searching for files in directory /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/icons Searching for files in directory /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/lastinstall Reading and parsing tag files Parsing files Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/aboutdialog.cpp... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/aboutdialog.cpp... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/aboutdialog.h... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/aboutdialog.h... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/application.cpp... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/application.cpp... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/application.h... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/application.h... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/avogadro.cpp... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/avogadro.cpp... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/backgroundfileformat.cpp... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/backgroundfileformat.cpp... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/backgroundfileformat.h... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/backgroundfileformat.h... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.cpp... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.cpp... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.h... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.h... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/menubuilder.cpp... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/menubuilder.cpp... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/menubuilder.h... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/menubuilder.h... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/rpclistener.cpp... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/rpclistener.cpp... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/rpclistener.h... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/rpclistener.h... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/viewfactory.cpp... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/viewfactory.cpp... Preprocessing /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/viewfactory.h... Parsing file /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/viewfactory.h... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Distributing member group do/build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.cpp:429: warning: Member setWidgetMolecule(T *glWidget, M *mol) (function) of namespace Avogadro is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.cpp:791: warning: Member populatePluginModel(ScenePluginModel &model, bool editOnly=false) (function) of namespace Avogadro is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.cpp:815: warning: Member populateTools(T *glWidget) (function) of namespace Avogadro is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.cpp:1573: warning: Member ToolSort(const ToolPlugin *a, const ToolPlugin *b) (function) of namespace Avogadro is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/aboutdialog.h:31: warning: Member AboutDialog(QWidget *Parent) (function) of class Avogadro::AboutDialog is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/application.h:57: warning: Member Application(int &argc, char **argv) (function) of class Avogadro::Application is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/application.h:58: warning: Member loadFile(const QString &fileName) (function) of class Avogadro::Application is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/application.h:61: warning: Member event(QEvent *event) (function) of class Avogadro::Application is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.h:75: warning: Member setMolecule(Avogadro::QtGui::Molecule *molecule) (slot) of class Avogadro::MainWindow is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.h:71: warning: Member MainWindow(const QStringList &fileNames, bool disableSettings=false) (function) of class Avogadro::MainWindow is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.h:103: warning: Member molecule() (function) of class Avogadro::MainWindow is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.h:216: warning: Member undoEdit() (slot) of class Avogadro::MainWindow is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.h:217: warning: Member redoEdit() (slot) of class Avogadro::MainWindow is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.h:218: warning: Member activeMoleculeEdited() (slot) of class Avogadro::MainWindow is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/mainwindow.h:124: warning: Member closeEvent(QCloseEvent *event) (function) of class Avogadro::MainWindow is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/menubuilder.h:56: warning: argument 'menu' of command @param is not found in the argument list of MenuBuilder::buildMenuBar(QMenuBar *menuBar) /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/menubuilder.h:63: warning: The following parameters of Avogadro::MenuBuilder::buildMenuBar(QMenuBar *menuBar) are not documented: parameter 'menuBar' /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/rpclistener.h:48: warning: Member RpcListener(QObject *parent=0) (function) of class Avogadro::RpcListener is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/rpclistener.h:51: warning: Member start() (function) of class Avogadro::RpcListener is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/viewfactory.h:55: warning: Member views() const (function) of class Avogadro::ViewFactory is not documented. /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro/viewfactory.h:56: warning: Member createView(const QString &view) (function) of class Avogadro::ViewFactory is not documented. cumentation. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for namespace Avogadro Generating docs for compound Avogadro::AboutDialog... Generating docs for compound Avogadro::Application... Generating docs for compound Avogadro::BackgroundFileFormat... Generating docs for compound Avogadro::MainWindow... Generating docs for compound Avogadro::MenuBuilder... Generating docs for compound Avogadro::RpcListener... Generating docs for compound Avogadro::ViewFactory... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... lookup cache used 209/65536 hits=978 misses=295 finished... make[5]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' Built target documentation make[4]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0' dh_auto_install --destdir=debian/tmp cd obj-x86_64-linux-gnu && make -j4 install 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7%] Built target avogadro_autogen make -f avogadro/CMakeFiles/avogadro.dir/build.make avogadro/CMakeFiles/avogadro.dir/depend make[4]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' cd /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/avogadro-lcDMJH/avogadro-1.93.0 /build/avogadro-lcDMJH/avogadro-1.93.0/avogadro /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/avogadro/CMakeFiles/avogadro.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' make -f avogadro/CMakeFiles/avogadro.dir/build.make avogadro/CMakeFiles/avogadro.dir/build make[4]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'avogadro/CMakeFiles/avogadro.dir/build'. make[4]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' [100%] Built target avogadro make[3]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/avogadro-lcDMJH/avogadro-1.93.0/debian/tmp/usr/share/doc/AvogadroApp/avogadro2/README.md -- Installing: /build/avogadro-lcDMJH/avogadro-1.93.0/debian/tmp/usr/share/doc/AvogadroApp/avogadro2/CONTRIBUTING.md -- Installing: /build/avogadro-lcDMJH/avogadro-1.93.0/debian/tmp/usr/share/doc/AvogadroApp/avogadro2/LICENSE -- Installing: /build/avogadro-lcDMJH/avogadro-1.93.0/debian/tmp/usr/share/applications/avogadro2.desktop -- Installing: /build/avogadro-lcDMJH/avogadro-1.93.0/debian/tmp/usr/share/pixmaps/avogadro2.png -- Installing: /build/avogadro-lcDMJH/avogadro-1.93.0/debian/tmp/usr/bin/avogadro2 make[2]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0/obj-x86_64-linux-gnu' cp -r obj-x86_64-linux-gnu/docs/html debian/tmp make[1]: Leaving directory '/build/avogadro-lcDMJH/avogadro-1.93.0' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'avogadro' in '../avogadro_1.93.0-2_amd64.deb'. dpkg-deb: building package 'avogadro-dbgsym' in '../avogadro-dbgsym_1.93.0-2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../avogadro_1.93.0-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/avogadro-lcDMJH /tmp/avogadro-1.93.0-27s2g6p3z I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.qr8x0uzR51... I: success in 710.1048 seconds md5: avogadro-dbgsym_1.93.0-2_amd64.deb: OK md5: avogadro_1.93.0-2_amd64.deb: OK sha1: avogadro-dbgsym_1.93.0-2_amd64.deb: OK sha1: avogadro_1.93.0-2_amd64.deb: OK sha256: avogadro-dbgsym_1.93.0-2_amd64.deb: OK sha256: avogadro_1.93.0-2_amd64.deb: OK Checksums: OK