Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/a/autodocksuite/autodocksuite_4.2.6-9_amd64.buildinfo Use metasnap for getting required timestamps Cannot get timestamps from metasnap: 404 (Not Found) Use snapshot for getting required timestamps Get source package info: autodocksuite=4.2.6-9 Source URL: http://snapshot.notset.fr/mr/package/autodocksuite/4.2.6-9/srcfiles?fileinfo=1 Initialize APT cache Get binary package info: autoconf=2.71-2 Binary URL: http://snapshot.notset.fr/mr/binary/autoconf/2.71-2/binfiles?fileinfo=1 Get binary package info: automake=1:1.16.5-1.1 Binary URL: http://snapshot.notset.fr/mr/binary/automake/1:1.16.5-1.1/binfiles?fileinfo=1 Get binary package info: autopoint=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/autopoint/0.21-4/binfiles?fileinfo=1 Get binary package info: autotools-dev=20220109.1 Binary URL: http://snapshot.notset.fr/mr/binary/autotools-dev/20220109.1/binfiles?fileinfo=1 Get binary package info: base-files=12.2 Binary URL: http://snapshot.notset.fr/mr/binary/base-files/12.2/binfiles?fileinfo=1 Get binary package info: base-passwd=3.5.52 Binary URL: http://snapshot.notset.fr/mr/binary/base-passwd/3.5.52/binfiles?fileinfo=1 Get binary package info: bash=5.1-6 Binary URL: http://snapshot.notset.fr/mr/binary/bash/5.1-6/binfiles?fileinfo=1 Get binary package info: binutils=2.38-1 Binary URL: http://snapshot.notset.fr/mr/binary/binutils/2.38-1/binfiles?fileinfo=1 Get binary package info: binutils-common=2.38-1 Binary URL: http://snapshot.notset.fr/mr/binary/binutils-common/2.38-1/binfiles?fileinfo=1 Get binary package info: binutils-x86-64-linux-gnu=2.38-1 Binary URL: http://snapshot.notset.fr/mr/binary/binutils-x86-64-linux-gnu/2.38-1/binfiles?fileinfo=1 Get binary package info: bsdextrautils=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/bsdextrautils/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: bsdutils=1:2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/bsdutils/1:2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: build-essential=12.9 Binary URL: http://snapshot.notset.fr/mr/binary/build-essential/12.9/binfiles?fileinfo=1 Get binary package info: bzip2=1.0.8-5 Binary URL: http://snapshot.notset.fr/mr/binary/bzip2/1.0.8-5/binfiles?fileinfo=1 Get binary package info: coreutils=8.32-4.1 Binary URL: http://snapshot.notset.fr/mr/binary/coreutils/8.32-4.1/binfiles?fileinfo=1 Get binary package info: cpp=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/cpp/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: cpp-11=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/cpp-11/11.2.0-16/binfiles?fileinfo=1 Get binary package info: dash=0.5.11+git20210903+057cd650a4ed-3 Binary URL: http://snapshot.notset.fr/mr/binary/dash/0.5.11+git20210903+057cd650a4ed-3/binfiles?fileinfo=1 Get binary package info: debconf=1.5.79 Binary URL: http://snapshot.notset.fr/mr/binary/debconf/1.5.79/binfiles?fileinfo=1 Get binary package info: debhelper=13.6 Binary URL: http://snapshot.notset.fr/mr/binary/debhelper/13.6/binfiles?fileinfo=1 Get binary package info: debianutils=5.7-0.1 Binary URL: http://snapshot.notset.fr/mr/binary/debianutils/5.7-0.1/binfiles?fileinfo=1 Get binary package info: dh-autoreconf=20 Binary URL: http://snapshot.notset.fr/mr/binary/dh-autoreconf/20/binfiles?fileinfo=1 Get binary package info: dh-strip-nondeterminism=1.13.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/dh-strip-nondeterminism/1.13.0-1/binfiles?fileinfo=1 Get binary package info: diffutils=1:3.7-5 Binary URL: http://snapshot.notset.fr/mr/binary/diffutils/1:3.7-5/binfiles?fileinfo=1 Get binary package info: dpkg=1.21.1 Binary URL: http://snapshot.notset.fr/mr/binary/dpkg/1.21.1/binfiles?fileinfo=1 Get binary package info: dpkg-dev=1.21.1 Binary URL: http://snapshot.notset.fr/mr/binary/dpkg-dev/1.21.1/binfiles?fileinfo=1 Get binary package info: dwz=0.14-1 Binary URL: http://snapshot.notset.fr/mr/binary/dwz/0.14-1/binfiles?fileinfo=1 Get binary package info: file=1:5.41-2 Binary URL: http://snapshot.notset.fr/mr/binary/file/1:5.41-2/binfiles?fileinfo=1 Get binary package info: findutils=4.8.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/findutils/4.8.0-1/binfiles?fileinfo=1 Get binary package info: g++=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/g++/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: g++-11=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/g++-11/11.2.0-16/binfiles?fileinfo=1 Get binary package info: gcc=4:11.2.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/gcc/4:11.2.0-2/binfiles?fileinfo=1 Get binary package info: gcc-11=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-11/11.2.0-16/binfiles?fileinfo=1 Get binary package info: gcc-11-base=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/gcc-11-base/11.2.0-16/binfiles?fileinfo=1 Get binary package info: gettext=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/gettext/0.21-4/binfiles?fileinfo=1 Get binary package info: gettext-base=0.21-4 Binary URL: http://snapshot.notset.fr/mr/binary/gettext-base/0.21-4/binfiles?fileinfo=1 Get binary package info: grep=3.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/grep/3.7-1/binfiles?fileinfo=1 Get binary package info: groff-base=1.22.4-8 Binary URL: http://snapshot.notset.fr/mr/binary/groff-base/1.22.4-8/binfiles?fileinfo=1 Get binary package info: gzip=1.10-4 Binary URL: http://snapshot.notset.fr/mr/binary/gzip/1.10-4/binfiles?fileinfo=1 Get binary package info: hostname=3.23 Binary URL: http://snapshot.notset.fr/mr/binary/hostname/3.23/binfiles?fileinfo=1 Get binary package info: init-system-helpers=1.62 Binary URL: http://snapshot.notset.fr/mr/binary/init-system-helpers/1.62/binfiles?fileinfo=1 Get binary package info: intltool-debian=0.35.0+20060710.5 Binary URL: http://snapshot.notset.fr/mr/binary/intltool-debian/0.35.0+20060710.5/binfiles?fileinfo=1 Get binary package info: libacl1=2.3.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libacl1/2.3.1-1/binfiles?fileinfo=1 Get binary package info: libarchive-zip-perl=1.68-1 Binary URL: http://snapshot.notset.fr/mr/binary/libarchive-zip-perl/1.68-1/binfiles?fileinfo=1 Get binary package info: libasan6=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/libasan6/11.2.0-16/binfiles?fileinfo=1 Get binary package info: libatomic1=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/libatomic1/11.2.0-16/binfiles?fileinfo=1 Get binary package info: libattr1=1:2.5.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libattr1/1:2.5.1-1/binfiles?fileinfo=1 Get binary package info: libaudit-common=1:3.0.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaudit-common/1:3.0.7-1/binfiles?fileinfo=1 Get binary package info: libaudit1=1:3.0.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libaudit1/1:3.0.7-1/binfiles?fileinfo=1 Get binary package info: libbinutils=2.38-1 Binary URL: http://snapshot.notset.fr/mr/binary/libbinutils/2.38-1/binfiles?fileinfo=1 Get binary package info: libblkid1=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libblkid1/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: libbz2-1.0=1.0.8-5 Binary URL: http://snapshot.notset.fr/mr/binary/libbz2-1.0/1.0.8-5/binfiles?fileinfo=1 Get binary package info: libc-bin=2.33-6 Binary URL: http://snapshot.notset.fr/mr/binary/libc-bin/2.33-6/binfiles?fileinfo=1 Get binary package info: libc-dev-bin=2.33-6 Binary URL: http://snapshot.notset.fr/mr/binary/libc-dev-bin/2.33-6/binfiles?fileinfo=1 Get binary package info: libc6=2.33-6 Binary URL: http://snapshot.notset.fr/mr/binary/libc6/2.33-6/binfiles?fileinfo=1 Get binary package info: libc6-dev=2.33-6 Binary URL: http://snapshot.notset.fr/mr/binary/libc6-dev/2.33-6/binfiles?fileinfo=1 Get binary package info: libcap-ng0=0.7.9-2.2+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libcap-ng0/0.7.9-2.2+b1/binfiles?fileinfo=1 Get binary package info: libcap2=1:2.44-1 Binary URL: http://snapshot.notset.fr/mr/binary/libcap2/1:2.44-1/binfiles?fileinfo=1 Get binary package info: libcc1-0=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/libcc1-0/11.2.0-16/binfiles?fileinfo=1 Get binary package info: libcom-err2=1.46.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/libcom-err2/1.46.5-2/binfiles?fileinfo=1 Get binary package info: libcrypt-dev=1:4.4.27-1.1 Binary URL: http://snapshot.notset.fr/mr/binary/libcrypt-dev/1:4.4.27-1.1/binfiles?fileinfo=1 Get binary package info: libcrypt1=1:4.4.27-1.1 Binary URL: http://snapshot.notset.fr/mr/binary/libcrypt1/1:4.4.27-1.1/binfiles?fileinfo=1 Get binary package info: libctf-nobfd0=2.38-1 Binary URL: http://snapshot.notset.fr/mr/binary/libctf-nobfd0/2.38-1/binfiles?fileinfo=1 Get binary package info: libctf0=2.38-1 Binary URL: http://snapshot.notset.fr/mr/binary/libctf0/2.38-1/binfiles?fileinfo=1 Get binary package info: libdb5.3=5.3.28+dfsg1-0.8 Binary URL: http://snapshot.notset.fr/mr/binary/libdb5.3/5.3.28+dfsg1-0.8/binfiles?fileinfo=1 Get binary package info: libdebconfclient0=0.261 Binary URL: http://snapshot.notset.fr/mr/binary/libdebconfclient0/0.261/binfiles?fileinfo=1 Get binary package info: libdebhelper-perl=13.6 Binary URL: http://snapshot.notset.fr/mr/binary/libdebhelper-perl/13.6/binfiles?fileinfo=1 Get binary package info: libdpkg-perl=1.21.1 Binary URL: http://snapshot.notset.fr/mr/binary/libdpkg-perl/1.21.1/binfiles?fileinfo=1 Get binary package info: libelf1=0.186-1 Binary URL: http://snapshot.notset.fr/mr/binary/libelf1/0.186-1/binfiles?fileinfo=1 Get binary package info: libexpat1=2.4.5-1 Binary URL: http://snapshot.notset.fr/mr/binary/libexpat1/2.4.5-1/binfiles?fileinfo=1 Get binary package info: libffi8=3.4.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/libffi8/3.4.2-4/binfiles?fileinfo=1 Get binary package info: libfile-stripnondeterminism-perl=1.13.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libfile-stripnondeterminism-perl/1.13.0-1/binfiles?fileinfo=1 Get binary package info: libgcc-11-dev=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/libgcc-11-dev/11.2.0-16/binfiles?fileinfo=1 Get binary package info: libgcc-s1=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/libgcc-s1/11.2.0-16/binfiles?fileinfo=1 Get binary package info: libgcrypt20=1.9.4-5 Binary URL: http://snapshot.notset.fr/mr/binary/libgcrypt20/1.9.4-5/binfiles?fileinfo=1 Get binary package info: libgdbm-compat4=1.23-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgdbm-compat4/1.23-1/binfiles?fileinfo=1 Get binary package info: libgdbm6=1.23-1 Binary URL: http://snapshot.notset.fr/mr/binary/libgdbm6/1.23-1/binfiles?fileinfo=1 Get binary package info: libgmp10=2:6.2.1+dfsg-3 Binary URL: http://snapshot.notset.fr/mr/binary/libgmp10/2:6.2.1+dfsg-3/binfiles?fileinfo=1 Get binary package info: libgomp1=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/libgomp1/11.2.0-16/binfiles?fileinfo=1 Get binary package info: libgpg-error0=1.43-3 Binary URL: http://snapshot.notset.fr/mr/binary/libgpg-error0/1.43-3/binfiles?fileinfo=1 Get binary package info: libgssapi-krb5-2=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libgssapi-krb5-2/1.18.3-7/binfiles?fileinfo=1 Get binary package info: libicu67=67.1-7 Binary URL: http://snapshot.notset.fr/mr/binary/libicu67/67.1-7/binfiles?fileinfo=1 Get binary package info: libisl23=0.24-2 Binary URL: http://snapshot.notset.fr/mr/binary/libisl23/0.24-2/binfiles?fileinfo=1 Get binary package info: libitm1=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/libitm1/11.2.0-16/binfiles?fileinfo=1 Get binary package info: libk5crypto3=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libk5crypto3/1.18.3-7/binfiles?fileinfo=1 Get binary package info: libkeyutils1=1.6.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libkeyutils1/1.6.1-2/binfiles?fileinfo=1 Get binary package info: libkrb5-3=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libkrb5-3/1.18.3-7/binfiles?fileinfo=1 Get binary package info: libkrb5support0=1.18.3-7 Binary URL: http://snapshot.notset.fr/mr/binary/libkrb5support0/1.18.3-7/binfiles?fileinfo=1 Get binary package info: liblsan0=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/liblsan0/11.2.0-16/binfiles?fileinfo=1 Get binary package info: liblz4-1=1.9.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblz4-1/1.9.3-2/binfiles?fileinfo=1 Get binary package info: liblzma5=5.2.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/liblzma5/5.2.5-2/binfiles?fileinfo=1 Get binary package info: libmagic-mgc=1:5.41-2 Binary URL: http://snapshot.notset.fr/mr/binary/libmagic-mgc/1:5.41-2/binfiles?fileinfo=1 Get binary package info: libmagic1=1:5.41-2 Binary URL: http://snapshot.notset.fr/mr/binary/libmagic1/1:5.41-2/binfiles?fileinfo=1 Get binary package info: libmount1=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libmount1/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: libmpc3=1.2.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/libmpc3/1.2.1-1/binfiles?fileinfo=1 Get binary package info: libmpdec3=2.5.1-2 Binary URL: http://snapshot.notset.fr/mr/binary/libmpdec3/2.5.1-2/binfiles?fileinfo=1 Get binary package info: libmpfr6=4.1.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libmpfr6/4.1.0-3/binfiles?fileinfo=1 Get binary package info: libncursesw6=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libncursesw6/6.3-2/binfiles?fileinfo=1 Get binary package info: libnsl-dev=1.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libnsl-dev/1.3.0-2/binfiles?fileinfo=1 Get binary package info: libnsl2=1.3.0-2 Binary URL: http://snapshot.notset.fr/mr/binary/libnsl2/1.3.0-2/binfiles?fileinfo=1 Get binary package info: libpam-modules=1.4.0-11 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-modules/1.4.0-11/binfiles?fileinfo=1 Get binary package info: libpam-modules-bin=1.4.0-11 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-modules-bin/1.4.0-11/binfiles?fileinfo=1 Get binary package info: libpam-runtime=1.4.0-11 Binary URL: http://snapshot.notset.fr/mr/binary/libpam-runtime/1.4.0-11/binfiles?fileinfo=1 Get binary package info: libpam0g=1.4.0-11 Binary URL: http://snapshot.notset.fr/mr/binary/libpam0g/1.4.0-11/binfiles?fileinfo=1 Get binary package info: libpcre2-8-0=10.39-3 Binary URL: http://snapshot.notset.fr/mr/binary/libpcre2-8-0/10.39-3/binfiles?fileinfo=1 Get binary package info: libpcre3=2:8.39-13 Binary URL: http://snapshot.notset.fr/mr/binary/libpcre3/2:8.39-13/binfiles?fileinfo=1 Get binary package info: libperl5.34=5.34.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/libperl5.34/5.34.0-3/binfiles?fileinfo=1 Get binary package info: libpipeline1=1.5.5-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpipeline1/1.5.5-1/binfiles?fileinfo=1 Get binary package info: libpython3-stdlib=3.9.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3-stdlib/3.9.8-1/binfiles?fileinfo=1 Get binary package info: libpython3.9-minimal=3.9.10-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.9-minimal/3.9.10-1/binfiles?fileinfo=1 Get binary package info: libpython3.9-stdlib=3.9.10-1 Binary URL: http://snapshot.notset.fr/mr/binary/libpython3.9-stdlib/3.9.10-1/binfiles?fileinfo=1 Get binary package info: libquadmath0=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/libquadmath0/11.2.0-16/binfiles?fileinfo=1 Get binary package info: libreadline8=8.1.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/libreadline8/8.1.2-1/binfiles?fileinfo=1 Get binary package info: libseccomp2=2.5.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libseccomp2/2.5.3-2/binfiles?fileinfo=1 Get binary package info: libselinux1=3.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libselinux1/3.3-1+b1/binfiles?fileinfo=1 Get binary package info: libsigsegv2=2.14-1 Binary URL: http://snapshot.notset.fr/mr/binary/libsigsegv2/2.14-1/binfiles?fileinfo=1 Get binary package info: libsmartcols1=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libsmartcols1/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: libsqlite3-0=3.37.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsqlite3-0/3.37.2-2/binfiles?fileinfo=1 Get binary package info: libssl1.1=1.1.1m-1 Binary URL: http://snapshot.notset.fr/mr/binary/libssl1.1/1.1.1m-1/binfiles?fileinfo=1 Get binary package info: libstdc++-11-dev=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/libstdc++-11-dev/11.2.0-16/binfiles?fileinfo=1 Get binary package info: libstdc++6=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/libstdc++6/11.2.0-16/binfiles?fileinfo=1 Get binary package info: libsub-override-perl=0.09-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsub-override-perl/0.09-2/binfiles?fileinfo=1 Get binary package info: libsystemd0=250.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libsystemd0/250.3-2/binfiles?fileinfo=1 Get binary package info: libtinfo6=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtinfo6/6.3-2/binfiles?fileinfo=1 Get binary package info: libtirpc-common=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc-common/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtirpc-dev=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc-dev/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtirpc3=1.3.2-2 Binary URL: http://snapshot.notset.fr/mr/binary/libtirpc3/1.3.2-2/binfiles?fileinfo=1 Get binary package info: libtool=2.4.6-15 Binary URL: http://snapshot.notset.fr/mr/binary/libtool/2.4.6-15/binfiles?fileinfo=1 Get binary package info: libtsan0=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/libtsan0/11.2.0-16/binfiles?fileinfo=1 Get binary package info: libubsan1=11.2.0-16 Binary URL: http://snapshot.notset.fr/mr/binary/libubsan1/11.2.0-16/binfiles?fileinfo=1 Get binary package info: libuchardet0=0.0.7-1 Binary URL: http://snapshot.notset.fr/mr/binary/libuchardet0/0.0.7-1/binfiles?fileinfo=1 Get binary package info: libudev1=250.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/libudev1/250.3-2/binfiles?fileinfo=1 Get binary package info: libunistring2=1.0-1 Binary URL: http://snapshot.notset.fr/mr/binary/libunistring2/1.0-1/binfiles?fileinfo=1 Get binary package info: libuuid1=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/libuuid1/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: libxml2=2.9.12+dfsg-6 Binary URL: http://snapshot.notset.fr/mr/binary/libxml2/2.9.12+dfsg-6/binfiles?fileinfo=1 Get binary package info: libzstd1=1.4.8+dfsg-3 Binary URL: http://snapshot.notset.fr/mr/binary/libzstd1/1.4.8+dfsg-3/binfiles?fileinfo=1 Get binary package info: linux-libc-dev=5.16.7-2 Binary URL: http://snapshot.notset.fr/mr/binary/linux-libc-dev/5.16.7-2/binfiles?fileinfo=1 Get binary package info: login=1:4.11.1+dfsg1-1 Binary URL: http://snapshot.notset.fr/mr/binary/login/1:4.11.1+dfsg1-1/binfiles?fileinfo=1 Get binary package info: lsb-base=11.1.0 Binary URL: http://snapshot.notset.fr/mr/binary/lsb-base/11.1.0/binfiles?fileinfo=1 Get binary package info: m4=1.4.18-5 Binary URL: http://snapshot.notset.fr/mr/binary/m4/1.4.18-5/binfiles?fileinfo=1 Get binary package info: make=4.3-4.1 Binary URL: http://snapshot.notset.fr/mr/binary/make/4.3-4.1/binfiles?fileinfo=1 Get binary package info: man-db=2.10.1-1 Binary URL: http://snapshot.notset.fr/mr/binary/man-db/2.10.1-1/binfiles?fileinfo=1 Get binary package info: mawk=1.3.4.20200120-3+b1 Binary URL: http://snapshot.notset.fr/mr/binary/mawk/1.3.4.20200120-3+b1/binfiles?fileinfo=1 Get binary package info: media-types=5.0.0 Binary URL: http://snapshot.notset.fr/mr/binary/media-types/5.0.0/binfiles?fileinfo=1 Get binary package info: ncurses-base=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/ncurses-base/6.3-2/binfiles?fileinfo=1 Get binary package info: ncurses-bin=6.3-2 Binary URL: http://snapshot.notset.fr/mr/binary/ncurses-bin/6.3-2/binfiles?fileinfo=1 Get binary package info: patch=2.7.6-7 Binary URL: http://snapshot.notset.fr/mr/binary/patch/2.7.6-7/binfiles?fileinfo=1 Get binary package info: perl=5.34.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/perl/5.34.0-3/binfiles?fileinfo=1 Get binary package info: perl-base=5.34.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/perl-base/5.34.0-3/binfiles?fileinfo=1 Get binary package info: perl-modules-5.34=5.34.0-3 Binary URL: http://snapshot.notset.fr/mr/binary/perl-modules-5.34/5.34.0-3/binfiles?fileinfo=1 Get binary package info: po-debconf=1.0.21+nmu1 Binary URL: http://snapshot.notset.fr/mr/binary/po-debconf/1.0.21+nmu1/binfiles?fileinfo=1 Get binary package info: python3=3.9.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3/3.9.8-1/binfiles?fileinfo=1 Get binary package info: python3-minimal=3.9.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3-minimal/3.9.8-1/binfiles?fileinfo=1 Get binary package info: python3.9=3.9.10-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3.9/3.9.10-1/binfiles?fileinfo=1 Get binary package info: python3.9-minimal=3.9.10-1 Binary URL: http://snapshot.notset.fr/mr/binary/python3.9-minimal/3.9.10-1/binfiles?fileinfo=1 Get binary package info: readline-common=8.1.2-1 Binary URL: http://snapshot.notset.fr/mr/binary/readline-common/8.1.2-1/binfiles?fileinfo=1 Get binary package info: rpcsvc-proto=1.4.2-4 Binary URL: http://snapshot.notset.fr/mr/binary/rpcsvc-proto/1.4.2-4/binfiles?fileinfo=1 Get binary package info: sed=4.8-1 Binary URL: http://snapshot.notset.fr/mr/binary/sed/4.8-1/binfiles?fileinfo=1 Get binary package info: sensible-utils=0.0.17 Binary URL: http://snapshot.notset.fr/mr/binary/sensible-utils/0.0.17/binfiles?fileinfo=1 Get binary package info: sysvinit-utils=3.01-1 Binary URL: http://snapshot.notset.fr/mr/binary/sysvinit-utils/3.01-1/binfiles?fileinfo=1 Get binary package info: tar=1.34+dfsg-1 Binary URL: http://snapshot.notset.fr/mr/binary/tar/1.34+dfsg-1/binfiles?fileinfo=1 Get binary package info: tzdata=2021e-1 Binary URL: http://snapshot.notset.fr/mr/binary/tzdata/2021e-1/binfiles?fileinfo=1 Get binary package info: util-linux=2.37.3-1+b1 Binary URL: http://snapshot.notset.fr/mr/binary/util-linux/2.37.3-1+b1/binfiles?fileinfo=1 Get binary package info: xz-utils=5.2.5-2 Binary URL: http://snapshot.notset.fr/mr/binary/xz-utils/5.2.5-2/binfiles?fileinfo=1 Get binary package info: zlib1g=1:1.2.11.dfsg-2 Binary URL: http://snapshot.notset.fr/mr/binary/zlib1g/1:1.2.11.dfsg-2/binfiles?fileinfo=1 Remaining packages to be found: 165 Timestamp source (33 packages): deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220208T213545Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220123T025342Z/ bookworm main Remaining packages to be found: 8 Timestamp source (7 packages): deb http://snapshot.notset.fr/archive/debian/20220215T025613Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220130T030506Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211103T025035Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220219T213354Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210830T143924Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211212T031254Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220212T154028Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211118T025207Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220112T025121Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211214T030236Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211122T030439Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220216T030243Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220124T155715Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220217T154341Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210823T024636Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211205T025806Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220104T153720Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211223T031038Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210816T024705Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210901T090918Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220106T025822Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211123T025155Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211220T093239Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220208T091208Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220202T030237Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220129T210618Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220129T025638Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210911T144836Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220211T025424Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220125T033125Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210930T025245Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211108T025858Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211105T024921Z/ bookworm main Remaining packages to be found: 2 Timestamp source (1 packages): deb http://snapshot.notset.fr/archive/debian/20220225T025859Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210909T025907Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220101T024315Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220218T213206Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210903T030245Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220122T031231Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220124T035008Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211019T025145Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211124T025830Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211118T205424Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211226T092955Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220212T031344Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20220221T085442Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211008T024925Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210824T024320Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20210902T030735Z/ bookworm main Skipping snapshot: deb http://snapshot.notset.fr/archive/debian/20211030T025126Z/ bookworm main Remaining packages to be found: 1 Timestamp source (1 packages): deb http://snapshot.notset.fr/archive/debian/20220219T151118Z/ unstable main New buildinfo file: /tmp/autodocksuite-4.2.6-9jle9tz6x/autodocksuite_4.2.6-9_amd64.buildinfo env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf:all=2.71-2 automake:all=1:1.16.5-1.1 autopoint:all=0.21-4 autotools-dev:all=20220109.1 base-files:amd64=12.2 base-passwd:amd64=3.5.52 bash:amd64=5.1-6 binutils:amd64=2.38-1 binutils-common:amd64=2.38-1 binutils-x86-64-linux-gnu:amd64=2.38-1 bsdextrautils:amd64=2.37.3-1+b1 bsdutils:amd64=1:2.37.3-1+b1 build-essential:amd64=12.9 bzip2:amd64=1.0.8-5 coreutils:amd64=8.32-4.1 cpp:amd64=4:11.2.0-2 cpp-11:amd64=11.2.0-16 dash:amd64=0.5.11+git20210903+057cd650a4ed-3 debconf:all=1.5.79 debhelper:all=13.6 debianutils:amd64=5.7-0.1 dh-autoreconf:all=20 dh-strip-nondeterminism:all=1.13.0-1 diffutils:amd64=1:3.7-5 dpkg:amd64=1.21.1 dpkg-dev:all=1.21.1 dwz:amd64=0.14-1 file:amd64=1:5.41-2 findutils:amd64=4.8.0-1 g++:amd64=4:11.2.0-2 g++-11:amd64=11.2.0-16 gcc:amd64=4:11.2.0-2 gcc-11:amd64=11.2.0-16 gcc-11-base:amd64=11.2.0-16 gettext:amd64=0.21-4 gettext-base:amd64=0.21-4 grep:amd64=3.7-1 groff-base:amd64=1.22.4-8 gzip:amd64=1.10-4 hostname:amd64=3.23 init-system-helpers:all=1.62 intltool-debian:all=0.35.0+20060710.5 libacl1:amd64=2.3.1-1 libarchive-zip-perl:all=1.68-1 libasan6:amd64=11.2.0-16 libatomic1:amd64=11.2.0-16 libattr1:amd64=1:2.5.1-1 libaudit-common:all=1:3.0.7-1 libaudit1:amd64=1:3.0.7-1 libbinutils:amd64=2.38-1 libblkid1:amd64=2.37.3-1+b1 libbz2-1.0:amd64=1.0.8-5 libc-bin:amd64=2.33-6 libc-dev-bin:amd64=2.33-6 libc6:amd64=2.33-6 libc6-dev:amd64=2.33-6 libcap-ng0:amd64=0.7.9-2.2+b1 libcap2:amd64=1:2.44-1 libcc1-0:amd64=11.2.0-16 libcom-err2:amd64=1.46.5-2 libcrypt-dev:amd64=1:4.4.27-1.1 libcrypt1:amd64=1:4.4.27-1.1 libctf-nobfd0:amd64=2.38-1 libctf0:amd64=2.38-1 libdb5.3:amd64=5.3.28+dfsg1-0.8 libdebconfclient0:amd64=0.261 libdebhelper-perl:all=13.6 libdpkg-perl:all=1.21.1 libelf1:amd64=0.186-1 libexpat1:amd64=2.4.5-1 libffi8:amd64=3.4.2-4 libfile-stripnondeterminism-perl:all=1.13.0-1 libgcc-11-dev:amd64=11.2.0-16 libgcc-s1:amd64=11.2.0-16 libgcrypt20:amd64=1.9.4-5 libgdbm-compat4:amd64=1.23-1 libgdbm6:amd64=1.23-1 libgmp10:amd64=2:6.2.1+dfsg-3 libgomp1:amd64=11.2.0-16 libgpg-error0:amd64=1.43-3 libgssapi-krb5-2:amd64=1.18.3-7 libicu67:amd64=67.1-7 libisl23:amd64=0.24-2 libitm1:amd64=11.2.0-16 libk5crypto3:amd64=1.18.3-7 libkeyutils1:amd64=1.6.1-2 libkrb5-3:amd64=1.18.3-7 libkrb5support0:amd64=1.18.3-7 liblsan0:amd64=11.2.0-16 liblz4-1:amd64=1.9.3-2 liblzma5:amd64=5.2.5-2 libmagic-mgc:amd64=1:5.41-2 libmagic1:amd64=1:5.41-2 libmount1:amd64=2.37.3-1+b1 libmpc3:amd64=1.2.1-1 libmpdec3:amd64=2.5.1-2 libmpfr6:amd64=4.1.0-3 libncursesw6:amd64=6.3-2 libnsl-dev:amd64=1.3.0-2 libnsl2:amd64=1.3.0-2 libpam-modules:amd64=1.4.0-11 libpam-modules-bin:amd64=1.4.0-11 libpam-runtime:all=1.4.0-11 libpam0g:amd64=1.4.0-11 libpcre2-8-0:amd64=10.39-3 libpcre3:amd64=2:8.39-13 libperl5.34:amd64=5.34.0-3 libpipeline1:amd64=1.5.5-1 libpython3-stdlib:amd64=3.9.8-1 libpython3.9-minimal:amd64=3.9.10-1 libpython3.9-stdlib:amd64=3.9.10-1 libquadmath0:amd64=11.2.0-16 libreadline8:amd64=8.1.2-1 libseccomp2:amd64=2.5.3-2 libselinux1:amd64=3.3-1+b1 libsigsegv2:amd64=2.14-1 libsmartcols1:amd64=2.37.3-1+b1 libsqlite3-0:amd64=3.37.2-2 libssl1.1:amd64=1.1.1m-1 libstdc++-11-dev:amd64=11.2.0-16 libstdc++6:amd64=11.2.0-16 libsub-override-perl:all=0.09-2 libsystemd0:amd64=250.3-2 libtinfo6:amd64=6.3-2 libtirpc-common:all=1.3.2-2 libtirpc-dev:amd64=1.3.2-2 libtirpc3:amd64=1.3.2-2 libtool:all=2.4.6-15 libtsan0:amd64=11.2.0-16 libubsan1:amd64=11.2.0-16 libuchardet0:amd64=0.0.7-1 libudev1:amd64=250.3-2 libunistring2:amd64=1.0-1 libuuid1:amd64=2.37.3-1+b1 libxml2:amd64=2.9.12+dfsg-6 libzstd1:amd64=1.4.8+dfsg-3 linux-libc-dev:amd64=5.16.7-2 login:amd64=1:4.11.1+dfsg1-1 lsb-base:all=11.1.0 m4:amd64=1.4.18-5 make:amd64=4.3-4.1 man-db:amd64=2.10.1-1 mawk:amd64=1.3.4.20200120-3+b1 media-types:all=5.0.0 ncurses-base:all=6.3-2 ncurses-bin:amd64=6.3-2 patch:amd64=2.7.6-7 perl:amd64=5.34.0-3 perl-base:amd64=5.34.0-3 perl-modules-5.34:all=5.34.0-3 po-debconf:all=1.0.21+nmu1 python3:amd64=3.9.8-1 python3-minimal:amd64=3.9.8-1 python3.9:amd64=3.9.10-1 python3.9-minimal:amd64=3.9.10-1 readline-common:all=8.1.2-1 rpcsvc-proto:amd64=1.4.2-4 sed:amd64=4.8-1 sensible-utils:all=0.0.17 sysvinit-utils:amd64=3.01-1 tar:amd64=1.34+dfsg-1 tzdata:all=2021e-1 util-linux:amd64=2.37.3-1+b1 xz-utils:amd64=5.2.5-2 zlib1g:amd64=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220222T025855Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220222T025855Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220215T025613Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220225T025859Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220219T151118Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d autodocksuite=4.2.6-9 && mkdir -p /build/autodocksuite-PEeJIp && dpkg-source --no-check -x /*.dsc /build/autodocksuite-PEeJIp/autodocksuite-4.2.6 && chown -R builduser:builduser /build/autodocksuite-PEeJIp" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/autodocksuite-PEeJIp/autodocksuite-4.2.6 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1645350513" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/autodocksuite-PEeJIp /tmp/autodocksuite-4.2.6-9jle9tz6x bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220219T213354Z bookworm main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.S0s8fFak8Y as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.S0s8fFak8Y Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220219T213354Z bookworm/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220219T213354Z bookworm/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (925 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4693 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-6) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220222T025855Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220222T025855Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220215T025613Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220225T025859Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220219T151118Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.S0s8fFak8Y Get:1 http://snapshot.notset.fr/archive/debian/20220222T025855Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220215T025613Z bookworm InRelease [129 kB] Get:4 http://snapshot.notset.fr/archive/debian/20220225T025859Z bookworm InRelease [130 kB] Get:5 http://snapshot.notset.fr/archive/debian/20220219T151118Z unstable InRelease [165 kB] Ign:6 http://snapshot.notset.fr/archive/debian/20220222T025855Z bookworm/main Sources Ign:7 http://snapshot.notset.fr/archive/debian/20220222T025855Z bookworm/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20220222T025855Z bookworm/main Sources Ign:7 http://snapshot.notset.fr/archive/debian/20220222T025855Z bookworm/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20220222T025855Z bookworm/main Sources Ign:7 http://snapshot.notset.fr/archive/debian/20220222T025855Z bookworm/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220222T025855Z bookworm/main Sources [11.9 MB] Get:7 http://snapshot.notset.fr/archive/debian/20220222T025855Z bookworm/main amd64 Packages [11.3 MB] Ign:8 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:9 http://snapshot.notset.fr/archive/debian/20220215T025613Z bookworm/main amd64 Packages Ign:10 http://snapshot.notset.fr/archive/debian/20220225T025859Z bookworm/main amd64 Packages Ign:11 http://snapshot.notset.fr/archive/debian/20220219T151118Z unstable/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:9 http://snapshot.notset.fr/archive/debian/20220215T025613Z bookworm/main amd64 Packages Ign:10 http://snapshot.notset.fr/archive/debian/20220225T025859Z bookworm/main amd64 Packages Ign:11 http://snapshot.notset.fr/archive/debian/20220219T151118Z unstable/main amd64 Packages Ign:8 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:9 http://snapshot.notset.fr/archive/debian/20220215T025613Z bookworm/main amd64 Packages Ign:10 http://snapshot.notset.fr/archive/debian/20220225T025859Z bookworm/main amd64 Packages Ign:11 http://snapshot.notset.fr/archive/debian/20220219T151118Z unstable/main amd64 Packages Get:8 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Get:9 http://snapshot.notset.fr/archive/debian/20220215T025613Z bookworm/main amd64 Packages [11.2 MB] Get:10 http://snapshot.notset.fr/archive/debian/20220225T025859Z bookworm/main amd64 Packages [11.3 MB] Get:11 http://snapshot.notset.fr/archive/debian/20220219T151118Z unstable/main amd64 Packages [12.2 MB] Fetched 69.6 MB in 1min 28s (787 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.S0s8fFak8Y I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d autodocksuite=4.2.6-9 && mkdir -p /build/autodocksuite-PEeJIp && dpkg-source --no-check -x /*.dsc /build/autodocksuite-PEeJIp/autodocksuite-4.2.6 && chown -R builduser:builduser /build/autodocksuite-PEeJIp"' exec /tmp/mmdebstrap.S0s8fFak8Y Reading package lists... NOTICE: 'autodocksuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/autodocksuite.git Please use: git clone https://salsa.debian.org/med-team/autodocksuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.5 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220222T025855Z bookworm/main autodocksuite 4.2.6-9 (dsc) [2373 B] Get:2 http://snapshot.notset.fr/archive/debian/20220222T025855Z bookworm/main autodocksuite 4.2.6-9 (tar) [35.4 MB] Get:3 http://snapshot.notset.fr/archive/debian/20220222T025855Z bookworm/main autodocksuite 4.2.6-9 (diff) [19.0 kB] Fetched 35.5 MB in 28s (1281 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'autodocksuite_4.2.6-9.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting autodocksuite in /build/autodocksuite-PEeJIp/autodocksuite-4.2.6 dpkg-source: info: unpacking autodocksuite_4.2.6.orig.tar.gz dpkg-source: info: unpacking autodocksuite_4.2.6-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying create_fake_autoreconf_files.patch dpkg-source: info: applying csh2bash.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying 2to3.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/autodocksuite-PEeJIp/autodocksuite-4.2.6 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1645350513" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.S0s8fFak8Y dpkg-buildpackage: info: source package autodocksuite dpkg-buildpackage: info: source version 4.2.6-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6' dh_auto_clean --sourcedirectory=autodock dh_auto_clean --sourcedirectory=autogrid rm -rf autodock/usr autogrid/usr rm -rf autodock/compile autogrid/compile rm -rf autogrid/mingw_* autogrid/parse_param_line.* autogrid/printdate.* autogrid/printhms.* autogrid/read_parameter_library* autogrid/stop.* autogrid/timesys* if [ -d debian/autodock_save ] ; then mv debian/autodock_save/* autodock; rmdir debian/autodock_save ; fi if [ -d debian/autogrid_save ] ; then mv debian/autogrid_save/* autogrid; rmdir debian/autogrid_save ; fi # remove test results rm -rf autodock/Tests/popfile autodock/Tests/test_1pgp*.dlg rm -rf autodock_testresults rm -rf autogrid/Tests/hsg1_sm.*.map autogrid/Tests/hsg1_sm.glg autogrid/Tests/hsg1_sm.maps* autogrid/Tests/test_x1* autogrid/Tests/x1hpv.*.map autogrid/Tests/x1hpv.maps.* rm -rf autogrid_testresults find . -name "*.pyc" -delete make[1]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6' mkdir -p debian/autodock_save cd autodock && cp -a Makefile.in aclocal.m4 config.guess config.sub configure ../debian/autodock_save && autoreconf -i configure.ac:36: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:36: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:36: the top level configure.ac:36: installing './compile' dh_auto_configure --sourcedirectory=autodock cd autodock && ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes /build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autodock/missing: Unknown '--is-lightweight' option Try '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autodock/missing --help' for more information configure: WARNING: 'missing' script is too old or missing checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gawk... (cached) mawk checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for ranlib... ranlib checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for GNU libc compatible malloc... yes checking for gethostname... yes checking for getpid... yes checking for GetProcessId... no checking for fchmod... yes checking for setlinebuf... yes checking for sysconf... yes checking for times... yes checking for getrusage... yes checking for pow... no checking for sqrt... no checking for strncasecmp... yes checking whether the compiler supports GNU C++... (cached) yes checking whether g++ accepts -g... (cached) yes checking for g++ option to enable C++11 features... (cached) none needed checking dependency style of g++... (cached) none checking for g++ option to support OpenMP... -fopenmp checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands mkdir -p debian/autogrid_save cd autogrid && cp -a Makefile.in aclocal.m4 config.guess config.sub configure ../debian/autogrid_save && autoreconf -i configure.ac:27: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:27: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:27: the top level configure.ac:24: installing './compile' dh_auto_configure --sourcedirectory=autogrid cd autogrid && ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes /build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autogrid/missing: Unknown '--is-lightweight' option Try '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autogrid/missing --help' for more information configure: WARNING: 'missing' script is too old or missing checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for sqrt in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for an ANSI C-conforming const... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for GNU libc compatible malloc... yes checking for gethostname... yes checking for getpid... yes checking for GetProcessId... no checking for fchmod... yes checking for setlinebuf... yes checking for sysconf... yes checking for times... yes checking for getrusage... yes checking for pow... yes checking for sqrt... yes checking for strncasecmp... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands make[1]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6' debian/rules override_dh_auto_build make[1]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6' dh_auto_build --sourcedirectory=autodock cd autodock && make -j10 make[2]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autodock' rm -f default_parameters.h sh ./paramdat2h.csh ./AD4_parameters.dat ./AD4.1_bound.dat > default_parameters.h make all-am make[3]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autodock' g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-main.o `test -f 'main.cc' || echo './'`main.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-alea.o `test -f 'alea.cc' || echo './'`alea.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-analysis.o `test -f 'analysis.cc' || echo './'`analysis.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cc' || echo './'`atom_parameter_manager.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-banner.o `test -f 'banner.cc' || echo './'`banner.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-bestpdb.o `test -f 'bestpdb.cc' || echo './'`bestpdb.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-calculateEnergies.o `test -f 'calculateEnergies.cc' || echo './'`calculateEnergies.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-call_glss.o `test -f 'call_glss.cc' || echo './'`call_glss.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-call_ls.o `test -f 'call_ls.cc' || echo './'`call_ls.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-center_ligand.o `test -f 'center_ligand.cc' || echo './'`center_ligand.cc main.cc:798:74: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 798 | (void) fprintf(logFile, " Compiled on %s at %s\n\n\n", __DATE__, __TIME__); | ^~~~~~~~ main.cc:798:84: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 798 | (void) fprintf(logFile, " Compiled on %s at %s\n\n\n", __DATE__, __TIME__); | ^~~~~~~~ main.cc:3490: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 3490 | #pragma omp parallel for \ | bestpdb.cc: In function ‘void bestpdb(int, const int*, const int (*)[2000], const Real*, const Real (*)[2048][3], const char (*)[128], int, Boole, const Real*, int, FILE*)’: bestpdb.cc:58:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 58 | register int i=0, | ^ bestpdb.cc:59:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 59 | j=0, | ^ bestpdb.cc:60:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 60 | k=0, | ^ bestpdb.cc:61:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 61 | confnum=0; | ^~~~~~~ In file included from eval.h:38, from support.h:237, from ls.h:40, from call_ls.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from ls.h:40, from call_ls.cc:40: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ In file included from eval.h:38, from support.h:237, from gs.h:36, from call_glss.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from gs.h:36, from call_glss.cc:40: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from analysis.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ analysis.cc: In function ‘void analysis(int, int*, GroupEnergy*, int, const char (*)[128], const Real*, const Real*, const Real*, Boole, const Real&, const Real (*)[3], const EnergyTables*, MapType*, const Real*, int, int, const NonbondParam*, int, int, State*, const char*, const Real*, Boole, Boole, const int (*)[2048], const int*, const Real (*)[3], const char*, const Real&, Boole, int, const int*, Boole, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Boole, Unbound_Model, Boole, int, int, FILE*)’: analysis.cc:138:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 138 | register int i = 0; | ^ analysis.cc:139:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 139 | register int j = 0; | ^ analysis.cc:140:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 140 | register int k = 0; | ^ analysis.cc:141:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 141 | register int t = 0; | ^ call_ls.cc: In function ‘Representation** cnv_state_to_rep(const State&)’: call_ls.cc:50:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 50 | register int i; | ^ call_glss.cc: In function ‘State call_glss(Global_Search*, Local_Search*, const State&, unsigned int, unsigned int, int, FILE*, const Output_pop_stats&, Molecule*, Eval*, Boole, Boole, Boole, const GridMapSetInfo*, const char*, int*)’: call_glss.cc:259:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 259 | register unsigned int i; | ^ call_glss.cc:260:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 260 | register int j; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-changeState.o `test -f 'changeState.cc' || echo './'`changeState.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-check_header_float.o `test -f 'check_header_float.cc' || echo './'`check_header_float.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-check_header_int.o `test -f 'check_header_int.cc' || echo './'`check_header_int.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-check_header_line.o `test -f 'check_header_line.cc' || echo './'`check_header_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-cluster_analysis.o `test -f 'cluster_analysis.cc' || echo './'`cluster_analysis.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-clmode.o `test -f 'clmode.cc' || echo './'`clmode.cc In file included from changeState.cc:34: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ changeState.cc: In function ‘State changeState(const State&, const Real&, const Real&, int, const Real (*)[8][2], const int*)’: changeState.cc:46:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 46 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-cnv_state_to_coords.o `test -f 'cnv_state_to_coords.cc' || echo './'`cnv_state_to_coords.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-com.o `test -f 'com.cc' || echo './'`com.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-conformation_sampler.o `test -f 'conformation_sampler.cc' || echo './'`conformation_sampler.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-dimLibrary.o `test -f 'dimLibrary.cc' || echo './'`dimLibrary.cc com.cc:238: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 238 | #pragma omp critical | In file included from eval.h:38, from support.h:237, from gs.h:36, from hybrids.h:40, from main.cc:98: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from gs.h:36, from hybrids.h:40, from main.cc:98: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-distdepdiel.o `test -f 'distdepdiel.cc' || echo './'`distdepdiel.cc main.cc: In function ‘int main(int, const char**)’: main.cc:480:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 480 | register int i = 0; | ^ main.cc:481:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 481 | register int j = 0; | ^ main.cc:482:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 482 | register int k = 0; | ^ main.cc:484:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 484 | register int xyz = 0; | ^~~ cluster_analysis.cc: In function ‘int cluster_analysis(const Real&, int (*)[2000], int*, const int*, int, int, const int*, const Real (*)[2048][3], const Real (*)[3], const Real*, Real (*)[2000], Boole, Boole, Real (*)[3], int, Real*, Boole, int)’: cluster_analysis.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 61 | register int compare = 0, | ^~~~~~~ cluster_analysis.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 62 | i = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-stateLibrary.o `test -f 'stateLibrary.cc' || echo './'`stateLibrary.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-readfield.o `test -f 'readfield.cc' || echo './'`readfield.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from cnv_state_to_coords.cc:37: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from clmode.h:40, from clmode.cc:38: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ clmode.cc: In function ‘void clmode(int, const Real&, const char*, const clock_t&, const tms&, Boole, const char*, const Real (*)[3], const Real*, Boole, Boole, const char*, Boole, int, int, FILE*)’: clmode.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 62 | register int xyz = 0; | ^~~ clmode.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 89 | register int i = 0; | ^ clmode.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 90 | register int j = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-readmap.o `test -f 'readmap.cc' || echo './'`readmap.cc In file included from eval.h:38, from support.h:237, from conformation_sampler.h:29, from conformation_sampler.cc:27: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-readPDBQT.o `test -f 'readPDBQT.cc' || echo './'`readPDBQT.cc In file included from support.h:237, from conformation_sampler.h:29, from conformation_sampler.cc:27: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-read_parameter_library.o `test -f 'read_parameter_library.cc' || echo './'`read_parameter_library.cc conformation_sampler.cc: In constructor ‘ConformationSampler::ConformationSampler(const State&, int, Eval*, int, FILE*)’: conformation_sampler.cc:99:10: warning: variable ‘base_q’ set but not used [-Wunused-but-set-variable] 99 | Quat base_q = probe_point.readQuat(); | ^~~~~~ readfield.cc: In function ‘void readfield(GridMapSetInfo*, char*, const clock_t&, const tms&, int, FILE*)’: readfield.cc:49:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 49 | register int i = 0; | ^ In file included from eval.h:38, from support.h:237, from gs.h:36, from pso.h:4, from dimLibrary.cc:6: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-eval.o `test -f 'eval.cc' || echo './'`eval.cc readfield.cc:83:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 83 | (void) fgets(inputline, LINE_LEN, fldFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readfield.cc:108:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 108 | (void) fgets(inputline, LINE_LEN, fldFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readfield.cc:116:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 116 | (void) fgets(inputline, LINE_LEN, fldFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readfield.cc:123:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 123 | (void) fgets(inputline, LINE_LEN, fldFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from support.h:237, from gs.h:36, from pso.h:4, from dimLibrary.cc:6: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-gencau.o `test -f 'gencau.cc' || echo './'`gencau.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-getrms.o `test -f 'getrms.cc' || echo './'`getrms.cc dimLibrary.cc: In function ‘void copyDimension(State*, const Position&)’: dimLibrary.cc:17:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 17 | register int i, j; | ^ dimLibrary.cc:17:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 17 | register int i, j; | ^ dimLibrary.cc: In function ‘void copyState2Dimension(Position*, const State&)’: dimLibrary.cc:34:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 34 | register int i, j; | ^ dimLibrary.cc:34:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 34 | register int i, j; | ^ In file included from stateLibrary.cc:34: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ stateLibrary.cc: In function ‘void initialiseState(State*)’: stateLibrary.cc:40:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 40 | register int i; | ^ stateLibrary.cc: In function ‘void copyState(State*, const State&)’: stateLibrary.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 61 | register int i; | ^ stateLibrary.cc: In function ‘void printState(FILE*, State, int)’: stateLibrary.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 90 | register int i; | ^ stateLibrary.cc: In function ‘int checkState(FILE*, const State*)’: stateLibrary.cc:199:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 199 | register int i; | ^ stateLibrary.cc: In function ‘Molecule copyStateToMolecule(const State*, Molecule*)’: stateLibrary.cc:251:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 251 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-get_atom_type.o `test -f 'get_atom_type.cc' || echo './'`get_atom_type.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-getInitialState.o `test -f 'getInitialState.cc' || echo './'`getInitialState.cc readmap.cc: In function ‘Statistics readmap(char*, int, const clock_t&, const tms&, Boole, Boole*, int, const GridMapSetInfo*, MapType*, char, FILE*)’: readmap.cc:82:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 82 | register int xyz = 0; | ^~~ readmap.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 83 | register int i = 0; | ^ readmap.cc:84:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 84 | register int j = 0; | ^ readmap.cc:85:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 85 | register int k = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-getpdbcrds.o `test -f 'getpdbcrds.cc' || echo './'`getpdbcrds.cc read_parameter_library.cc: In function ‘void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)’: read_parameter_library.cc:207:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 207 | register int counter = 0; | ^~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-gs.o `test -f 'gs.cc' || echo './'`gs.cc readPDBQT.cc: In function ‘Molecule readPDBQT(char*, int, int*, Real (*)[3], Real*, Boole*, int*, int*, char (*)[5], char*, char*, Boole, char (*)[128], int*, int*, Boole*, int*, int*, Real*, Real*, int*, int*, int (*)[2048], Real (*)[3], int*, int*, NonbondParam*, const clock_t&, const tms&, const char*, int*, int*, int, char (*)[256], int*, int, int, FILE*)’: readPDBQT.cc:138:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 138 | register int i = 0; | ^ readPDBQT.cc:139:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 139 | register int j = 0; | ^ readPDBQT.cc:133:25: warning: variable ‘B_has_conect_records’ set but not used [-Wunused-but-set-variable] 133 | Boole B_has_conect_records = FALSE; | ^~~~~~~~~~~~~~~~~~~~ get_atom_type.cc: In function ‘int get_atom_type(const char*)’: get_atom_type.cc:53:9: warning: variable ‘bond_index’ set but not used [-Wunused-but-set-variable] 53 | int bond_index = -1; | ^~~~~~~~~~ getrms.cc: In function ‘Real getrms(const Real (*)[3], const Real (*)[3], Boole, Boole, int, const int*, Boole, int)’: getrms.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 48 | register int i, j, xyz; | ^ getrms.cc:48:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 48 | register int i, j, xyz; | ^ getrms.cc:48:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 48 | register int i, j, xyz; | ^~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-initautodock.o `test -f 'initautodock.cc' || echo './'`initautodock.cc In file included from eval.h:38, from eval.cc:39: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from eval.cc:39: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ eval.cc: In function ‘void make_state_from_rep(const Representation* const*, State*, int, FILE*)’: eval.cc:72:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 72 | register int i; | ^ eval.cc: In member function ‘double Eval::eval(int)’: eval.cc:135:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 135 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-input_state.o `test -f 'input_state.cc' || echo './'`input_state.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-investigate.o `test -f 'investigate.cc' || echo './'`investigate.cc In file included from initautodock.h:31, from initautodock.cc:36: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ initautodock.cc: In function ‘void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)’: initautodock.cc:76:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 76 | register int xyz = 0; | ^~~ initautodock.cc:77:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 77 | register int i = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-linpack.o `test -f 'linpack.cc' || echo './'`linpack.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-ls.o `test -f 'ls.cc' || echo './'`ls.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-mapping.o `test -f 'mapping.cc' || echo './'`mapping.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-mingw_getrusage.o `test -f 'mingw_getrusage.cc' || echo './'`mingw_getrusage.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-minmeanmax.o `test -f 'minmeanmax.cc' || echo './'`minmeanmax.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-mkNewState.o `test -f 'mkNewState.cc' || echo './'`mkNewState.cc In file included from getInitialState.h:31, from getInitialState.cc:38: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ getInitialState.cc: In function ‘void getInitialState(Real*, const Real&, State*, State*, State*, Boole, Boole, Boole, const Real*, const Real*, const Real*, Real (*)[3], const Real (*)[3], const char (*)[128], EnergyComponent*, const EnergyTables*, Boole, MapType*, int, int, int*, GroupEnergy*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], int, int, const Real&, int, const int*, Boole, const Real&, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Unbound_Model, int, FILE*)’: getInitialState.cc:111:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 111 | register int i = 0; | ^ In file included from eval.h:38, from support.h:237, from gs.h:36, from gs.cc:42: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from gs.h:36, from gs.cc:42: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ In file included from mkNewState.h:31, from mkNewState.cc:33: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ mkNewState.cc: In function ‘void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)’: mkNewState.cc:56:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 56 | register int i; | ^ gs.cc: In function ‘double worst_in_window(const double*, int, int, FILE*)’: gs.cc:73:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 73 | register int i; | ^ gs.cc: In function ‘double avg_in_window(const double*, int, FILE*)’: gs.cc:107:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 107 | register int i; | ^ gs.cc: In member function ‘double Genetic_Algorithm::worst_this_generation(const Population&, int, FILE*)’: gs.cc:130:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 130 | register unsigned int i; | ^ In file included from input_state.h:30, from input_state.cc:34: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ gs.cc: In member function ‘void Genetic_Algorithm::make_table(int, const Real&, int, FILE*)’: gs.cc:287:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 287 | register int i, j; | ^ gs.cc:287:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 287 | register int i, j; | ^ gs.cc: In member function ‘void Genetic_Algorithm::initialize(unsigned int, unsigned int, int, FILE*)’: gs.cc:396:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 396 | register unsigned int i; | ^ gs.cc: In member function ‘void Genetic_Algorithm::crossover(Population&, int, FILE*)’: gs.cc:596:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 596 | register unsigned int i; | ^ In file included from constants.h:28, from structs.h:30, from rep.h:45, from support.h:236, from gs.h:36, from gs.cc:42: autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); } | ^~~~~~~~~ gs.cc:641:10: note: in expansion of macro ‘assertQuatOK’ 641 | assertQuatOK( q_father ); | ^~~~~~~~~~~~ autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); } | ^~~~~~~~~ gs.cc:652:10: note: in expansion of macro ‘assertQuatOK’ 652 | assertQuatOK( q_mother ); | ^~~~~~~~~~~~ gs.cc: In member function ‘void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)’: gs.cc:877:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 877 | register unsigned int i; | ^ gs.cc: In member function ‘void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)’: gs.cc:983:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 983 | register unsigned int i=0, start_index = 0; | ^ gs.cc:983:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 983 | register unsigned int i=0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function ‘void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)’: gs.cc:1262:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1262 | register unsigned int i = 0, start_index = 0; | ^ gs.cc:1262:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1262 | register unsigned int i = 0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function ‘void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)’: gs.cc:1327:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1327 | register unsigned int i = 0, start_index = 0; | ^ gs.cc:1327:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1327 | register unsigned int i = 0, start_index = 0; | ^~~~~~~~~~~ In file included from eval.h:38, from support.h:237, from mapping.cc:37: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ gs.cc: In member function ‘virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)’: gs.cc:1420:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1420 | register unsigned int i; | ^ In file included from support.h:237, from mapping.cc:37: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-mkTorTree.o `test -f 'mkTorTree.cc' || echo './'`mkTorTree.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc input_state.cc: In function ‘int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)’: input_state.cc:70:25: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | (void) fgets(myline, LINELEN, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from investigate.h:33, from investigate.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ investigate.cc: In function ‘void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)’: investigate.cc:103:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 103 | register int Test = -1; | ^~~~ investigate.cc:106:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 106 | register int i = 0; | ^ investigate.cc:120:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 120 | register int NumOutside = 0; | ^~~~~~~~~~ investigate.cc:121:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 121 | register int LocalTest = 0; | ^~~~~~~~~ In file included from eval.h:38, from support.h:237, from ls.h:40, from ls.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from ls.h:40, from ls.cc:40: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ mkTorTree.cc: In function ‘void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)’: mkTorTree.cc:88:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 88 | register int i = 0; | ^ mkTorTree.cc:89:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 89 | register int j = 0; | ^ mkTorTree.cc:90:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 90 | register int k = 0; | ^ ls.cc: In function ‘Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)’: ls.cc:46:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 46 | register unsigned int i, index = 0; | ^ ls.cc:46:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 46 | register unsigned int i, index = 0; | ^~~~~ ls.cc: In member function ‘virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)’: ls.cc:88:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^ ls.cc:88:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^ ls.cc:88:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^~~~~~~~~~~~~ ls.cc:88:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^~~~~~~~~~~~ ls.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 89 | register Real temp_rho = rho; | ^~~~~~~~ ls.cc:92:9: warning: unused variable ‘thisQuat’ [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~ ls.cc:92:19: warning: unused variable ‘prevQuat’ [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~ ls.cc:92:29: warning: unused variable ‘startQuat’ [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~~ ls.cc: In member function ‘virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)’: ls.cc:248:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^ ls.cc:248:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^ ls.cc:248:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~~ ls.cc:248:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~ ls.cc:248:70: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mkTorTree.cc: At global scope: mkTorTree.cc:456:5: warning: ‘int check_atomnumber(int, const int*, int, int, FILE*)’ defined but not used [-Wunused-function] 456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord, | ^~~~~~~~~~~~~~~~ In file included from eval.h:38, from support.h:237, from minmeanmax.cc:39: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from minmeanmax.cc:39: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc minmeanmax.cc: In function ‘void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)’: minmeanmax.cc:51:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:51:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:51:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:56:76: warning: variable ‘best’ set but not used [-Wunused-but-set-variable] 56 | double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ]; | ^~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc mkRandomState.cc: In function ‘State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)’: mkRandomState.cc:44:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 44 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc In file included from nonbonds.cc:35: mdist.h: In function ‘void mdist()’: mdist.h:45:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 45 | register int i,j; | ^ mdist.h:45:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 45 | register int i,j; | ^ mdist.h:32:25: warning: operation on ‘mindist[0][0]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:89:5: note: in expansion of macro ‘set_minmax’ 89 | set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[0][0]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:89:5: note: in expansion of macro ‘set_minmax’ 89 | set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on ‘mindist[1][1]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:96:5: note: in expansion of macro ‘set_minmax’ 96 | set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[1][1]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:96:5: note: in expansion of macro ‘set_minmax’ 96 | set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on ‘mindist[2][2]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:102:5: note: in expansion of macro ‘set_minmax’ 102 | set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[2][2]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:102:5: note: in expansion of macro ‘set_minmax’ 102 | set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on ‘mindist[3][3]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:107:5: note: in expansion of macro ‘set_minmax’ 107 | set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming. | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[3][3]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:107:5: note: in expansion of macro ‘set_minmax’ 107 | set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming. | ^~~~~~~~~~ mdist.h:32:25: warning: operation on ‘mindist[4][4]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:111:5: note: in expansion of macro ‘set_minmax’ 111 | set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[4][4]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:111:5: note: in expansion of macro ‘set_minmax’ 111 | set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults | ^~~~~~~~~~ mdist.h:32:25: warning: operation on ‘mindist[5][5]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:114:5: note: in expansion of macro ‘set_minmax’ 114 | set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[5][5]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:114:5: note: in expansion of macro ‘set_minmax’ 114 | set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on ‘mindist[6][6]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:116:5: note: in expansion of macro ‘set_minmax’ 116 | set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[6][6]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:116:5: note: in expansion of macro ‘set_minmax’ 116 | set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515 | ^~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc nonbonds.cc: In function ‘void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)’: nonbonds.cc:250:13: warning: ‘?:’ using integer constants in boolean context [-Wint-in-bool-context] 248 | for (int j=0; j< | ~~ 249 | B_print_all_bonds | ~~~~~~~~~~~~~~~~~ 250 | ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 | : nbonds[i]; // loop over this atom's "j" bonds | ~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from writePDBQT.h:34, from writePDBQT.cc:35: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-pso.o `test -f 'pso.cc' || echo './'`pso.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc prClusterHist.cc: In function ‘void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)’: prClusterHist.cc:51:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 51 | register int Rank=0, | ^~~~ prClusterHist.cc:52:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 52 | j=0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-rep.o `test -f 'rep.cc' || echo './'`rep.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc In file included from qmultiply.cc:35: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.cc:42:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 42 | register const Quat *const ql, //left | ^~ qmultiply.cc:43:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 43 | register const Quat *const qr ) //right | ^~ qmultiply.cc: In function ‘void qmultiply(Quat*, const Quat*, const Quat*)’: qmultiply.cc:66:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from writePDBQT.h:34, from prInitialState.cc:36: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.cc: In function ‘AxisAngle QuatToAxisAngle(const Quat&)’: qmultiply.cc:224:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 224 | register double angle = 2. * acos( input.w ); | ^~~~~ qmultiply.cc: In function ‘Quat inverse(const Quat&)’: qmultiply.cc:356:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 356 | register Quat conj, inv; | ^~~~ qmultiply.cc:356:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 356 | register Quat conj, inv; | ^~~ qmultiply.cc:357:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 357 | register double inv_squared_magnitude; | ^~~~~~~~~~~~~~~~~~~~~ prInitialState.cc: In function ‘void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)’: prInitialState.cc:59:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 59 | register int i = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc prTorConList.cc: In function ‘void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)’: prTorConList.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 64 | register int i = 0; | ^ In file included from eval.h:38, from support.h:237, from gs.h:36, from pso.h:4, from pso.cc:1: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-stack.o `test -f 'stack.cc' || echo './'`stack.cc In file included from support.h:237, from gs.h:36, from pso.h:4, from pso.cc:1: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ In file included from qtransform.h:35, from qtransform.cc:32: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qtransform.cc: In function ‘void qtransform(const Coord&, const Quat&, Real (*)[3], int)’: qtransform.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 65 | register int a; | ^ scauchy.cc: In function ‘Real scauchy2()’: scauchy.cc:81:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 81 | register Real x, y, r1, r2; | ^ scauchy.cc:81:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 81 | register Real x, y, r1, r2; | ^ scauchy.cc:81:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 81 | register Real x, y, r1, r2; | ^~ scauchy.cc:81:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 81 | register Real x, y, r1, r2; | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4-stop.o `test -f 'stop.cc' || echo './'`stop.cc rep.cc: In constructor ‘IntVector::IntVector(int)’: rep.cc:77:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 77 | register int i; | ^ rep.cc: In constructor ‘IntVector::IntVector(int, int, int)’: rep.cc:95:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 95 | register int i; | ^ rep.cc: In copy constructor ‘IntVector::IntVector(const IntVector&)’: rep.cc:129:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 129 | for (register unsigned int i=0; i ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); } | ^~~~~~~~~ gs.cc:641:10: note: in expansion of macro ‘assertQuatOK’ 641 | assertQuatOK( q_father ); | ^~~~~~~~~~~~ autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); } | ^~~~~~~~~ gs.cc:652:10: note: in expansion of macro ‘assertQuatOK’ 652 | assertQuatOK( q_mother ); | ^~~~~~~~~~~~ gs.cc: In member function ‘void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)’: gs.cc:877:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 877 | register unsigned int i; | ^ gs.cc: In member function ‘void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)’: gs.cc:983:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 983 | register unsigned int i=0, start_index = 0; | ^ gs.cc:983:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 983 | register unsigned int i=0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function ‘void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)’: gs.cc:1262:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1262 | register unsigned int i = 0, start_index = 0; | ^ gs.cc:1262:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1262 | register unsigned int i = 0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function ‘void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)’: gs.cc:1327:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1327 | register unsigned int i = 0, start_index = 0; | ^ gs.cc:1327:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1327 | register unsigned int i = 0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function ‘virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)’: gs.cc:1420:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 1420 | register unsigned int i; | ^ input_state.cc: In function ‘int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)’: input_state.cc:70:25: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | (void) fgets(myline, LINELEN, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc In file included from initautodock.h:31, from initautodock.cc:36: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ initautodock.cc: In function ‘void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)’: initautodock.cc:76:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 76 | register int xyz = 0; | ^~~ initautodock.cc:77:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 77 | register int i = 0; | ^ In file included from mkNewState.h:31, from mkNewState.cc:33: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ mkNewState.cc: In function ‘void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)’: mkNewState.cc:56:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 56 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc In file included from eval.h:38, from support.h:237, from ls.h:40, from ls.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from investigate.h:33, from investigate.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from ls.h:40, from ls.cc:40: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ investigate.cc: In function ‘void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)’: investigate.cc:103:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 103 | register int Test = -1; | ^~~~ investigate.cc:106:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 106 | register int i = 0; | ^ investigate.cc:120:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 120 | register int NumOutside = 0; | ^~~~~~~~~~ investigate.cc:121:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 121 | register int LocalTest = 0; | ^~~~~~~~~ ls.cc: In function ‘Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)’: ls.cc:46:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 46 | register unsigned int i, index = 0; | ^ ls.cc:46:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 46 | register unsigned int i, index = 0; | ^~~~~ ls.cc: In member function ‘virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)’: ls.cc:88:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^ ls.cc:88:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^ ls.cc:88:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^~~~~~~~~~~~~ ls.cc:88:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^~~~~~~~~~~~ ls.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 89 | register Real temp_rho = rho; | ^~~~~~~~ ls.cc:92:9: warning: unused variable ‘thisQuat’ [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~ ls.cc:92:19: warning: unused variable ‘prevQuat’ [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~ ls.cc:92:29: warning: unused variable ‘startQuat’ [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~~ ls.cc: In member function ‘virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)’: ls.cc:248:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^ ls.cc:248:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^ ls.cc:248:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~~ ls.cc:248:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~ ls.cc:248:70: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mkTorTree.cc: In function ‘void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)’: mkTorTree.cc:88:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 88 | register int i = 0; | ^ mkTorTree.cc:89:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 89 | register int j = 0; | ^ mkTorTree.cc:90:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 90 | register int k = 0; | ^ mkRandomState.cc: In function ‘State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)’: mkRandomState.cc:44:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 44 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc In file included from eval.h:38, from support.h:237, from minmeanmax.cc:39: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ mkTorTree.cc: At global scope: mkTorTree.cc:456:5: warning: ‘int check_atomnumber(int, const int*, int, int, FILE*)’ defined but not used [-Wunused-function] 456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord, | ^~~~~~~~~~~~~~~~ In file included from eval.h:38, from support.h:237, from mapping.cc:37: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from support.h:237, from minmeanmax.cc:39: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ In file included from support.h:237, from mapping.cc:37: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc minmeanmax.cc: In function ‘void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)’: minmeanmax.cc:51:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:51:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:51:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:56:76: warning: variable ‘best’ set but not used [-Wunused-but-set-variable] 56 | double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ]; | ^~~~ In file included from nonbonds.cc:35: mdist.h: In function ‘void mdist()’: mdist.h:45:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 45 | register int i,j; | ^ mdist.h:45:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 45 | register int i,j; | ^ mdist.h:32:25: warning: operation on ‘mindist[0][0]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:89:5: note: in expansion of macro ‘set_minmax’ 89 | set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[0][0]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:89:5: note: in expansion of macro ‘set_minmax’ 89 | set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on ‘mindist[1][1]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:96:5: note: in expansion of macro ‘set_minmax’ 96 | set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[1][1]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:96:5: note: in expansion of macro ‘set_minmax’ 96 | set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on ‘mindist[2][2]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:102:5: note: in expansion of macro ‘set_minmax’ 102 | set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[2][2]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:102:5: note: in expansion of macro ‘set_minmax’ 102 | set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on ‘mindist[3][3]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:107:5: note: in expansion of macro ‘set_minmax’ 107 | set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming. | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[3][3]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:107:5: note: in expansion of macro ‘set_minmax’ 107 | set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming. | ^~~~~~~~~~ mdist.h:32:25: warning: operation on ‘mindist[4][4]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:111:5: note: in expansion of macro ‘set_minmax’ 111 | set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[4][4]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:111:5: note: in expansion of macro ‘set_minmax’ 111 | set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults | ^~~~~~~~~~ mdist.h:32:25: warning: operation on ‘mindist[5][5]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:114:5: note: in expansion of macro ‘set_minmax’ 114 | set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[5][5]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:114:5: note: in expansion of macro ‘set_minmax’ 114 | set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on ‘mindist[6][6]’ may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:116:5: note: in expansion of macro ‘set_minmax’ 116 | set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on ‘maxdist[6][6]’ may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:116:5: note: in expansion of macro ‘set_minmax’ 116 | set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515 | ^~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc nonbonds.cc: In function ‘void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)’: nonbonds.cc:250:13: warning: ‘?:’ using integer constants in boolean context [-Wint-in-bool-context] 248 | for (int j=0; j< | ~~ 249 | B_print_all_bonds | ~~~~~~~~~~~~~~~~~ 250 | ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 | : nbonds[i]; // loop over this atom's "j" bonds | ~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from writePDBQT.h:34, from writePDBQT.cc:35: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-pso.o `test -f 'pso.cc' || echo './'`pso.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-rep.o `test -f 'rep.cc' || echo './'`rep.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc prTorConList.cc: In function ‘void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)’: prTorConList.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 64 | register int i = 0; | ^ In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from writePDBQT.h:34, from prInitialState.cc:36: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ prInitialState.cc: In function ‘void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)’: prInitialState.cc:59:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 59 | register int i = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc In file included from qtransform.h:35, from qtransform.cc:32: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qtransform.cc: In function ‘void qtransform(const Coord&, const Quat&, Real (*)[3], int)’: qtransform.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 65 | register int a; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc prClusterHist.cc: In function ‘void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)’: prClusterHist.cc:51:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 51 | register int Rank=0, | ^~~~ prClusterHist.cc:52:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 52 | j=0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-stack.o `test -f 'stack.cc' || echo './'`stack.cc In file included from qmultiply.cc:35: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.cc:42:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 42 | register const Quat *const ql, //left | ^~ qmultiply.cc:43:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 43 | register const Quat *const qr ) //right | ^~ qmultiply.cc: In function ‘void qmultiply(Quat*, const Quat*, const Quat*)’: qmultiply.cc:66:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autodock4_omp-stop.o `test -f 'stop.cc' || echo './'`stop.cc In file included from eval.h:38, from support.h:237, from gs.h:36, from pso.h:4, from pso.cc:1: qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.cc: In function ‘AxisAngle QuatToAxisAngle(const Quat&)’: qmultiply.cc:224:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 224 | register double angle = 2. * acos( input.w ); | ^~~~~ qmultiply.cc: In function ‘Quat inverse(const Quat&)’: qmultiply.cc:356:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 356 | register Quat conj, inv; | ^~~~ qmultiply.cc:356:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 356 | register Quat conj, inv; | ^~~ qmultiply.cc:357:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 357 | register double inv_squared_magnitude; | ^~~~~~~~~~~~~~~~~~~~~ In file included from support.h:237, from gs.h:36, from pso.h:4, from pso.cc:1: eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’: eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 195 | register int i; | ^ rep.cc: In constructor ‘IntVector::IntVector(int)’: rep.cc:77:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 77 | register int i; | ^ rep.cc: In constructor ‘IntVector::IntVector(int, int, int)’: rep.cc:95:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 95 | register int i; | ^ rep.cc: In copy constructor ‘IntVector::IntVector(const IntVector&)’: rep.cc:129:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 129 | for (register unsigned int i=0; i default_parameters.h sh ./copyfilesfromAD make all-am make[3]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autogrid' g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-main.o `test -f 'main.cpp' || echo './'`main.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-check_size.o `test -f 'check_size.cpp' || echo './'`check_size.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-setflags.o `test -f 'setflags.cpp' || echo './'`setflags.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-timesys.o `test -f 'timesys.cpp' || echo './'`timesys.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-timesyshms.o `test -f 'timesyshms.cpp' || echo './'`timesyshms.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-printhms.o `test -f 'printhms.cpp' || echo './'`printhms.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-prHMSfixed.o `test -f 'prHMSfixed.cpp' || echo './'`prHMSfixed.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-printdate.o `test -f 'printdate.cpp' || echo './'`printdate.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-strindex.o `test -f 'strindex.cpp' || echo './'`strindex.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-banner.o `test -f 'banner.cpp' || echo './'`banner.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-gpfparser.o `test -f 'gpfparser.cpp' || echo './'`gpfparser.cpp main.cpp: In function ‘int main(int, char**)’: main.cpp:427:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^ main.cpp:427:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^~ main.cpp:427:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^ main.cpp:427:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^ main.cpp:427:43: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^~~~~~ main.cpp:427:55: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^~~~~~~~ main.cpp:428:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~~~~~~~~ main.cpp:428:54: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~~ main.cpp:428:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:71: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:79: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:429:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 429 | register int closestH = 0; | ^~~~~~~~ g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-parsetypes.o `test -f 'parsetypes.cpp' || echo './'`parsetypes.cpp main.cpp:214:5: warning: variable ‘parameter_library_found’ set but not used [-Wunused-but-set-variable] 214 | int parameter_library_found = 0; | ^~~~~~~~~~~~~~~~~~~~~~~ main.cpp:263:8: warning: variable ‘maptypeptr’ set but not used [-Wunused-but-set-variable] 263 | char * maptypeptr; /*ptr for current map->type*/ | ^~~~~~~~~~ main.cpp:301:44: warning: variable ‘nitrogen’ set but not used [-Wunused-but-set-variable] 301 | int hydrogen, carbon, arom_carbon, oxygen, nitrogen; | ^~~~~~~~ main.cpp:302:21: warning: variable ‘nonHB_nitrogen’ set but not used [-Wunused-but-set-variable] 302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur; | ^~~~~~~~~~~~~~ main.cpp:302:46: warning: variable ‘nonHB_sulphur’ set but not used [-Wunused-but-set-variable] 302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur; | ^~~~~~~~~~~~~ main.cpp:305:5: warning: variable ‘chlorine’ set but not used [-Wunused-but-set-variable] 305 | int chlorine, bromine, fluorine, iodine; | ^~~~~~~~ main.cpp:305:15: warning: variable ‘bromine’ set but not used [-Wunused-but-set-variable] 305 | int chlorine, bromine, fluorine, iodine; | ^~~~~~~ main.cpp:305:24: warning: variable ‘fluorine’ set but not used [-Wunused-but-set-variable] 305 | int chlorine, bromine, fluorine, iodine; | ^~~~~~~~ main.cpp:305:34: warning: variable ‘iodine’ set but not used [-Wunused-but-set-variable] 305 | int chlorine, bromine, fluorine, iodine; | ^~~~~~ main.cpp:307:5: warning: variable ‘map_hydrogen’ set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~~~ main.cpp:307:19: warning: variable ‘map_carbon’ set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~ main.cpp:307:31: warning: variable ‘map_arom_carbon’ set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~~~~~~ main.cpp:307:48: warning: variable ‘map_oxygen’ set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~ main.cpp:307:60: warning: variable ‘map_nitrogen’ set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~~~ main.cpp:308:5: warning: variable ‘map_nonHB_hydrogen’ set but not used [-Wunused-but-set-variable] 308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur; | ^~~~~~~~~~~~~~~~~~ main.cpp:308:25: warning: variable ‘map_nonHB_nitrogen’ set but not used [-Wunused-but-set-variable] 308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur; | ^~~~~~~~~~~~~~~~~~ main.cpp:308:45: warning: variable ‘map_sulphur’ set but not used [-Wunused-but-set-variable] 308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur; | ^~~~~~~~~~~ main.cpp:308:58: warning: variable ‘map_nonHB_sulphur’ set but not used [-Wunused-but-set-variable] 308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur; | ^~~~~~~~~~~~~~~~~ main.cpp:309:5: warning: variable ‘map_chlorine’ set but not used [-Wunused-but-set-variable] 309 | int map_chlorine, map_bromine, map_fluorine, map_iodine; | ^~~~~~~~~~~~ main.cpp:309:19: warning: variable ‘map_bromine’ set but not used [-Wunused-but-set-variable] 309 | int map_chlorine, map_bromine, map_fluorine, map_iodine; | ^~~~~~~~~~~ main.cpp:309:32: warning: variable ‘map_fluorine’ set but not used [-Wunused-but-set-variable] 309 | int map_chlorine, map_bromine, map_fluorine, map_iodine; | ^~~~~~~~~~~~ main.cpp:309:46: warning: variable ‘map_iodine’ set but not used [-Wunused-but-set-variable] 309 | int map_chlorine, map_bromine, map_fluorine, map_iodine; | ^~~~~~~~~~ g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cpp' || echo './'`atom_parameter_manager.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-read_parameter_library.o `test -f 'read_parameter_library.cpp' || echo './'`read_parameter_library.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-parse_param_line.o `test -f 'parse_param_line.cpp' || echo './'`parse_param_line.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-distdepdiel.o `test -f 'distdepdiel.cpp' || echo './'`distdepdiel.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-mingw_getrusage.o `test -f 'mingw_getrusage.cpp' || echo './'`mingw_getrusage.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-calc_vina_potential.o `test -f 'calc_vina_potential.cpp' || echo './'`calc_vina_potential.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -c -o autogrid4-stop.o `test -f 'stop.cpp' || echo './'`stop.cpp read_parameter_library.cpp: In function ‘void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)’: read_parameter_library.cpp:207:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 207 | register int counter = 0; | ^~~~~~~ calc_vina_potential.cpp: In function ‘int calc_vina_potential(int, const char (*)[3], int, const char (*)[3], EnergyTables*)’: calc_vina_potential.cpp:110:9: warning: variable ‘hydrogen’ set but not used [-Wunused-but-set-variable] 110 | int hydrogen=-1; | ^~~~~~~~ calc_vina_potential.cpp:113:9: warning: variable ‘oxygen’ set but not used [-Wunused-but-set-variable] 113 | int oxygen=-1; | ^~~~~~ calc_vina_potential.cpp:114:9: warning: variable ‘nitrogen’ set but not used [-Wunused-but-set-variable] 114 | int nitrogen=-1; | ^~~~~~~~ calc_vina_potential.cpp:115:9: warning: variable ‘fluorine’ set but not used [-Wunused-but-set-variable] 115 | int fluorine=-1; | ^~~~~~~~ calc_vina_potential.cpp:116:9: warning: variable ‘chlorine’ set but not used [-Wunused-but-set-variable] 116 | int chlorine=-1; | ^~~~~~~~ calc_vina_potential.cpp:117:9: warning: variable ‘bromine’ set but not used [-Wunused-but-set-variable] 117 | int bromine=-1; | ^~~~~~~ calc_vina_potential.cpp:118:9: warning: variable ‘iodine’ set but not used [-Wunused-but-set-variable] 118 | int iodine=-1; | ^~~~~~ g++ -g -O2 -ffile-prefix-map=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6=. -fstack-protector-strong -Wformat -Werror=format-security -flto -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto -o autogrid4 autogrid4-main.o autogrid4-check_size.o autogrid4-setflags.o autogrid4-timesys.o autogrid4-timesyshms.o autogrid4-printhms.o autogrid4-prHMSfixed.o autogrid4-printdate.o autogrid4-strindex.o autogrid4-banner.o autogrid4-gpfparser.o autogrid4-parsetypes.o autogrid4-atom_parameter_manager.o autogrid4-read_parameter_library.o autogrid4-parse_param_line.o autogrid4-distdepdiel.o autogrid4-mingw_getrusage.o autogrid4-calc_vina_potential.o autogrid4-stop.o -lm make[3]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autogrid' make[2]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autogrid' make[1]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6' dh_auto_install --sourcedirectory=autodock cd autodock && make -j10 install DESTDIR=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autodock' make install-am make[3]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autodock' make[4]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autodock' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/debian/tmp/usr/bin' /usr/bin/install -c autodock4 autodock4.omp '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/debian/tmp/usr/bin' make[4]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autodock' make[3]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autodock' make[2]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autodock' dh_auto_install --sourcedirectory=autogrid cd autogrid && make -j10 install DESTDIR=/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autogrid' make install-am make[3]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autogrid' make[4]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autogrid' make[4]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/debian/tmp/usr/bin' /usr/bin/install -c autogrid4 '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/debian/tmp/usr/bin' make[4]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autogrid' make[3]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autogrid' make[2]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6/autogrid' make[1]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6' dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6' dh_installchangelogs autodock/RELEASENOTES make[1]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a debian/rules override_dh_missing make[1]: Entering directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6' find debian -name autodock4.omp -delete dh_missing make[1]: Leaving directory '/build/autodocksuite-PEeJIp/autodocksuite-4.2.6' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'autodock' in '../autodock_4.2.6-9_amd64.deb'. dpkg-deb: building package 'autodock-dbgsym' in '../autodock-dbgsym_4.2.6-9_amd64.deb'. dpkg-deb: building package 'autogrid' in '../autogrid_4.2.6-9_amd64.deb'. dpkg-deb: building package 'autogrid-dbgsym' in '../autogrid-dbgsym_4.2.6-9_amd64.deb'. dpkg-genbuildinfo --build=any -O../autodocksuite_4.2.6-9_amd64.buildinfo dpkg-genchanges --build=any -O../autodocksuite_4.2.6-9_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/autodocksuite-PEeJIp /tmp/autodocksuite-4.2.6-9jle9tz6x I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.S0s8fFak8Y... I: success in 2710.2827 seconds md5: autodock-dbgsym_4.2.6-9_amd64.deb: OK md5: autodock_4.2.6-9_amd64.deb: OK md5: autogrid-dbgsym_4.2.6-9_amd64.deb: OK md5: autogrid_4.2.6-9_amd64.deb: OK sha1: autodock-dbgsym_4.2.6-9_amd64.deb: OK sha1: autodock_4.2.6-9_amd64.deb: OK sha1: autogrid-dbgsym_4.2.6-9_amd64.deb: OK sha1: autogrid_4.2.6-9_amd64.deb: OK sha256: autodock-dbgsym_4.2.6-9_amd64.deb: OK sha256: autodock_4.2.6-9_amd64.deb: OK sha256: autogrid-dbgsym_4.2.6-9_amd64.deb: OK sha256: autogrid_4.2.6-9_amd64.deb: OK Checksums: OK