Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/a/augur/augur_11.0.0-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/augur-11.0.0-1xli5zyp3/augur_11.0.0-1_all.buildinfo Get source package info: augur=11.0.0-1 Source URL: http://snapshot.notset.fr/mr/package/augur/11.0.0-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-6 bsdutils=1:2.36.1-6 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.1 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.10.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210118-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-3 gettext-base=0.21-3 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblas3=3.9.0-3 libblkid1=2.36.1-6 libbrotli1=1.0.9-2+b2 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.45.6-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.256 libdebhelper-perl=13.3.1 libdeflate0=1.7-1 libdpkg-perl=1.20.7.1 libelf1=0.182-3 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.10.0-1 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgfortran5=10.2.1-6 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-6 libimagequant0=2.12.2-1.1 libisl23=0.23-1 libitm1=10.2.1-6 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.5-2 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 liblbfgsb0=3.0+dfsg.3-9 liblcms2-2=2.12~rc1-2 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-6 libmpc3=1.2.0-1 libmpdec3=2.5.1~rc1-2 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-2 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libpng16-16=1.6.37-3 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-3 libpython3.9-stdlib=3.9.1-3 libquadmath0=10.2.1-6 libreadline8=8.1-1 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsigsegv2=2.12-3 libsmartcols1=2.36.1-6 libsqlite3-0=3.34.1-1 libssl1.1=1.1.1i-2 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.2-5 libtiff5=4.2.0-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.2-5 libunistring2=0.9.10-4 libuuid1=2.36.1-6 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libxau6=1:1.0.8-1+b2 libxcb1=1.14-2.1 libxdmcp6=1:1.1.2-3 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.9-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mafft=7.475-1 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 po-debconf=1.0.21+nmu1 python3=3.9.1-1 python3-all=3.9.1-1 python3-attr=20.3.0-1 python3-biopython=1.78+dfsg-4 python3-dateutil=2.8.1-5 python3-decorator=4.4.2-2 python3-distutils=3.9.1-2 python3-freezegun=0.3.15-1 python3-importlib-metadata=1.6.0-2 python3-iniconfig=1.1.1-1 python3-jsonschema=3.2.0-3 python3-lib2to3=3.9.1-2 python3-minimal=3.9.1-1 python3-more-itertools=4.2.0-3 python3-numpy=1:1.19.5-1 python3-packaging=20.8-1 python3-pandas=1.1.5+dfsg-2 python3-pandas-lib=1.1.5+dfsg-2 python3-pil=8.1.0-1 python3-pkg-resources=51.3.3-1 python3-pluggy=0.13.0-6 python3-py=1.10.0-1 python3-pyparsing=2.4.7-1 python3-pyrsistent=0.15.5-1+b3 python3-pytest=6.0.2-2 python3-pytest-mock=1.10.4-4 python3-reportlab=3.5.59-1 python3-reportlab-accel=3.5.59-1 python3-scipy=1.6.0-2 python3-setuptools=51.3.3-1 python3-six=1.15.0-2 python3-toml=0.10.1-1 python3-treetime=0.8.1-1 python3-tz=2020.5-1 python3-zipp=1.0.0-3 python3.9=3.9.1-3 python3.9-minimal=3.9.1-3 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020f-1 util-linux=2.36.1-6 vcftools=0.1.16-2 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210821T085836Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210124T203726Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d augur=11.0.0-1 && mkdir -p /build/augur-EfpoJ9 && dpkg-source --no-check -x /*.dsc /build/augur-EfpoJ9/augur-11.0.0 && chown -R builduser:builduser /build/augur-EfpoJ9" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/augur-EfpoJ9/augur-11.0.0 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1611639884" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/augur-EfpoJ9 /tmp/augur-11.0.0-1xli5zyp3 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210124T203726Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.nzxOzD1LyE as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.nzxOzD1LyE Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210124T203726Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210124T203726Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1121 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4661 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210821T085836Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210124T203726Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.nzxOzD1LyE Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210821T085836Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210124T203726Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210821T085836Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210821T085836Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210821T085836Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210821T085836Z unstable/main amd64 Packages [11.8 MB] Fetched 34.6 MB in 29s (1194 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.nzxOzD1LyE I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d augur=11.0.0-1 && mkdir -p /build/augur-EfpoJ9 && dpkg-source --no-check -x /*.dsc /build/augur-EfpoJ9/augur-11.0.0 && chown -R builduser:builduser /build/augur-EfpoJ9"' exec /tmp/mmdebstrap.nzxOzD1LyE Reading package lists... NOTICE: 'augur' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/augur.git Please use: git clone https://salsa.debian.org/med-team/augur.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 11.2 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main augur 11.0.0-1 (dsc) [2379 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main augur 11.0.0-1 (tar) [11.2 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main augur 11.0.0-1 (diff) [14.0 kB] Fetched 11.2 MB in 9s (1279 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'augur_11.0.0-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting augur in /build/augur-EfpoJ9/augur-11.0.0 dpkg-source: info: unpacking augur_11.0.0.orig.tar.gz dpkg-source: info: unpacking augur_11.0.0-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/augur-EfpoJ9/augur-11.0.0 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1611639884" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.nzxOzD1LyE dpkg-buildpackage: info: source package augur dpkg-buildpackage: info: source version 11.0.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/augur-EfpoJ9/augur-11.0.0' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pytest_cache nextstrain_augur.egg-info make[1]: Leaving directory '/build/augur-EfpoJ9/augur-11.0.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-indep dh binary-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -i -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/mask.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/__version__.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/filenames.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/import_beast.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/clades.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/titers.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/ancestral.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/export_v1.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/distance.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/version.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/translate.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/validate_export.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/lbi.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/align.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/reconstruct_sequences.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/export.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/traits.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/titer_model.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/frequencies.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/filter.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/sequence_traits.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/__init__.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/__main__.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/validate.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/parse.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/frequency_estimators.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/export_v2.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/utils.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/import.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/refine.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/tree.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur creating /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/metadata_file.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/shell_command_runner.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/color_parser_line.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/node_data_file.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/node_data.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/node_data_reader.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/color_parser.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/__init__.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/date_disambiguator.py -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support creating /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/schema-auspice-config-v2.json -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/schema-export-v1-tree.json -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/colors.tsv -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/schema-annotations.json -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/lat_longs.tsv -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/schema-export-v2.json -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/schema-export-v1-meta.json -> /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data dh_auto_test -i -O--buildsystem=pybuild I: pybuild base:232: cd /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build; python3.9 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.9.1+, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/augur-EfpoJ9/augur-11.0.0 plugins: mock-1.10.4 collected 197 items tests/test_align.py ............................................... [ 23%] tests/test_filter.py ............... [ 31%] tests/test_frequencies.py ................... [ 41%] tests/test_mask.py ....................................... [ 60%] tests/test_parse.py .. [ 61%] tests/test_translate.py .. [ 62%] tests/test_utils.py .............. [ 70%] tests/test_validate_export.py .. [ 71%] tests/util_support/test_color_parser.py .... [ 73%] tests/util_support/test_date_disambiguator.py ..................... [ 83%] tests/util_support/test_metadata_file.py ........... [ 89%] tests/util_support/test_node_data.py ... [ 90%] tests/util_support/test_node_data_file.py ...... [ 93%] tests/util_support/test_node_data_reader.py ...... [ 96%] tests/util_support/test_shell_command_runner.py ...... [100%] ============================= 197 passed in 11.56s ============================= create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/augur-EfpoJ9/augur-11.0.0/debian/augur running install running build running build_py running install_lib creating /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr creating /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib creating /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9 creating /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/alignment.fasta.to_align.fasta -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages creating /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/mask.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__version__.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/filenames.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/import_beast.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/clades.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/titers.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/ancestral.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/export_v1.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/distance.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/version.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/translate.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/validate_export.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/lbi.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/align.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur creating /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/schema-auspice-config-v2.json -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/schema-export-v1-tree.json -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/colors.tsv -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/schema-annotations.json -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/lat_longs.tsv -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/schema-export-v2.json -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/schema-export-v1-meta.json -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/reconstruct_sequences.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/export.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/traits.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/titer_model.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/frequencies.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/filter.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/sequence_traits.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__init__.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur creating /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/tree.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/import_beast.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/distance.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/align.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/reconstruct_sequences.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/titer_model.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/filter.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/__version__.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/__init__.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/clades.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/sequence_traits.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/frequencies.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/parse.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/validate.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/refine.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/export_v2.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/titers.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/lbi.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/translate.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/version.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/mask.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/export.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/utils.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/traits.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/validate_export.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/export_v1.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/frequency_estimators.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/ancestral.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/import.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__main__.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/validate.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/parse.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/frequency_estimators.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/export_v2.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/utils.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/import.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/refine.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/tree.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur creating /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/metadata_file.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/shell_command_runner.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/color_parser_line.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/node_data_file.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/node_data.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/node_data_reader.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/color_parser.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__init__.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support creating /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/color_parser_line.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/node_data.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/shell_command_runner.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/__init__.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/node_data_reader.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/node_data_file.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/color_parser.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/date_disambiguator.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/metadata_file.cpython-39.pyc -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-EfpoJ9/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/date_disambiguator.py -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/mask.py to mask.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__version__.py to __version__.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/filenames.py to filenames.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/import_beast.py to import_beast.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/clades.py to clades.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/titers.py to titers.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/ancestral.py to ancestral.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/export_v1.py to export_v1.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/distance.py to distance.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/version.py to version.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/translate.py to translate.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/validate_export.py to validate_export.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/lbi.py to lbi.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/align.py to align.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/reconstruct_sequences.py to reconstruct_sequences.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/export.py to export.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/traits.py to traits.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/titer_model.py to titer_model.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/frequencies.py to frequencies.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/filter.py to filter.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/sequence_traits.py to sequence_traits.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__init__.py to __init__.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__main__.py to __main__.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/validate.py to validate.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/parse.py to parse.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/frequency_estimators.py to frequency_estimators.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/export_v2.py to export_v2.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/utils.py to utils.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/import.py to import.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/refine.py to refine.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/tree.py to tree.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/metadata_file.py to metadata_file.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/shell_command_runner.py to shell_command_runner.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/color_parser_line.py to color_parser_line.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/node_data_file.py to node_data_file.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/node_data.py to node_data.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/node_data_reader.py to node_data_reader.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/color_parser.py to color_parser.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__init__.py to __init__.cpython-39.pyc byte-compiling /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/date_disambiguator.py to date_disambiguator.cpython-39.pyc running install_data copying LICENSE.txt -> /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/ running install_egg_info running egg_info creating nextstrain_augur.egg-info writing nextstrain_augur.egg-info/PKG-INFO writing dependency_links to nextstrain_augur.egg-info/dependency_links.txt writing entry points to nextstrain_augur.egg-info/entry_points.txt writing requirements to nextstrain_augur.egg-info/requires.txt writing top-level names to nextstrain_augur.egg-info/top_level.txt writing manifest file 'nextstrain_augur.egg-info/SOURCES.txt' reading manifest file 'nextstrain_augur.egg-info/SOURCES.txt' writing manifest file 'nextstrain_augur.egg-info/SOURCES.txt' Copying nextstrain_augur.egg-info to /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/nextstrain_augur-11.0.0.egg-info Skipping SOURCES.txt running install_scripts Installing augur script to /build/augur-EfpoJ9/augur-11.0.0/debian/augur/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/augur-EfpoJ9/augur-11.0.0' dh_install find debian -name LICENSE.txt -delete find debian -name '*.fasta' -delete make[1]: Leaving directory '/build/augur-EfpoJ9/augur-11.0.0' dh_installdocs -i -O--buildsystem=pybuild dh_installchangelogs -i -O--buildsystem=pybuild dh_installman -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'augur' in '../augur_11.0.0-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../augur_11.0.0-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/augur-EfpoJ9 /tmp/augur-11.0.0-1xli5zyp3 I: cleaning package lists and apt cache... W: deleting files in /tmp: pytest-of-builduser I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.nzxOzD1LyE... I: success in 363.8427 seconds md5: augur_11.0.0-1_all.deb: OK sha1: augur_11.0.0-1_all.deb: OK sha256: augur_11.0.0-1_all.deb: OK Checksums: OK