Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/a/artemis/artemis_18.1.0+dfsg-3_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/artemis-18.1.0+dfsg-37rwmplof/artemis_18.1.0+dfsg-3_amd64.buildinfo Get source package info: artemis=18.1.0+dfsg-3 Source URL: http://snapshot.notset.fr/mr/package/artemis/18.1.0+dfsg-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 ant=1.10.9-1 ant-optional=1.10.9-1 autoconf=2.69-11.1 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 binutils=2.35.1-3 binutils-common=2.35.1-3 binutils-x86-64-linux-gnu=2.35.1-3 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 ca-certificates-java=20190909 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-19 dash=0.5.11+git20200708+dd9ef66-2 dctrl-tools=2.24-3+b1 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 default-jdk=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 devscripts=2.20.5 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dirmngr=2.2.20-1 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 emboss=6.6.0+dfsg-8 emboss-data=6.6.0+dfsg-8 emboss-lib=6.6.0+dfsg-8 fakeroot=1.25.3-1.1 file=1:5.39-3 findutils=4.7.0+git20201010-2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.0-1 g++-10=10.2.0-19 gcc=4:10.2.0-1 gcc-10=10.2.0-19 gcc-10-base=10.2.0-19 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gnupg=2.2.20-1 gnupg-l10n=2.2.20-1 gnupg-utils=2.2.20-1 gpg=2.2.20-1 gpg-agent=2.2.20-1 gpg-wks-client=2.2.20-1 gpg-wks-server=2.2.20-1 gpgconf=2.2.20-1 gpgsm=2.2.20-1 gpgv=2.2.20-1 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hicolor-icon-theme=0.17-2 hostname=3.23 imagemagick=8:6.9.11.24+dfsg-1+b2 imagemagick-6-common=8:6.9.11.24+dfsg-1 imagemagick-6.q16=8:6.9.11.24+dfsg-1+b2 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 java-common=0.72 java-wrappers=0.3 javahelper=0.77 jemboss=6.6.0+dfsg-8 junit4=4.13.1-1 junit5=5.3.2-4 libacl1=2.2.53-8 libactivation-java=1.2.0-2 libaom0=1.0.0.errata1-3 libaopalliance-java=20070526-6 libapache-pom-java=18-1 libapiguardian-java=1.1.0-2 libarchive-zip-perl=1.68-1 libargs4j-java=2.33-1 libasan6=10.2.0-19 libasm-java=7.3.1-1 libasound2=1.2.3.2-1+b1 libasound2-data=1.2.3.2-1 libassuan0=2.5.3-7.1 libatinject-jsr330-api-java=1.0+ds1-5 libatomic1=10.2.0-19 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libavahi-client3=0.8-3 libavahi-common-data=0.8-3 libavahi-common3=0.8-3 libb-hooks-op-check-perl=0.22-1+b3 libbarclay-java=2.1.0-3 libbatik-java=1.12-4 libbinutils=2.35.1-3 libbiojava-java=1:1.7.1-8 libbiojava1.7-java=1:1.7.1-8 libblkid1=2.36.1-2 libbrotli1=1.0.9-2+b1 libbsd0=0.10.0-1 libbsh-java=2.0b4-20 libbuild-helper-maven-plugin-java=3.0.0-1 libbyte-buddy-java=1.8.2-2 libbytecode-java=0.92.svn.20090106-2 libbz2-1.0=1.0.8-4 libc-bin=2.31-5 libc-dev-bin=2.31-5 libc6=2.31-5 libc6-dev=2.31-5 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.0-19 libcdi-api-java=1.2-2 libcglib-java=3.2.12-1 libclass-method-modifiers-perl=2.13-1 libcodemodel-java=2.6+jaxb2.3.0.1-9 libcom-err2=1.45.6-1 libcommons-beanutils-java=1.9.4-1 libcommons-cli-java=1.4-2 libcommons-codec-java=1.14-1 libcommons-collections3-java=3.2.2-2 libcommons-compress-java=1.20-1 libcommons-configuration-java=1.10-5 libcommons-dbcp-java=1.4-7 libcommons-digester-java=1.8.1-5 libcommons-io-java=2.8.0-1 libcommons-jexl2-java=2.1.1-4 libcommons-lang-java=2.6-9 libcommons-lang3-java=3.11-1 libcommons-logging-java=1.2-2 libcommons-math3-java=3.6.1-3 libcommons-net-java=3.6-1 libcommons-parent-java=43-1 libcommons-pool-java=1.6-3 libcommons-validator-java=1:1.6-2 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-3 libctf0=2.35.1-3 libcups2=2.3.3op1-3 libdav1d4=0.7.1-3 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.20-1 libde265-0=1.0.7-1 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdevel-callchecker-perl=0.008-1+b2 libdom4j-java=2.1.3-1 libdoxia-core-java=1.7-2 libdoxia-java=1.7-2 libdoxia-sitetools-java=1.7.5-2 libdpkg-perl=1.20.5 libdrm-amdgpu1=2.4.103-2 libdrm-common=2.4.103-2 libdrm-intel1=2.4.103-2 libdrm-nouveau2=2.4.103-2 libdrm-radeon1=2.4.103-2 libdrm2=2.4.103-2 libdtd-parser-java=1.2~svn20110404-1 libdynaloader-functions-perl=0.003-1 libedit2=3.1-20191231-1 libel-api-java=3.0.0-3 libelf1=0.182-1 libencode-locale-perl=1.05-1 libexpat1=2.2.10-1 libfakeroot=1.25.3-1.1 libfastinfoset-java=1.2.12-3 libffi7=3.3-5 libfftw3-double3=3.3.8-2 libfile-dirlist-perl=0.05-2 libfile-homedir-perl=1.006-1 libfile-listing-perl=6.14-1 libfile-stripnondeterminism-perl=1.9.0-1 libfile-touch-perl=0.11-1 libfile-which-perl=1.23-1 libfontbox2-java=2.0.21-1 libfontconfig1=2.13.1-4.2 libfop-java=1:2.5-1 libfreemarker-java=2.3.23-9 libfreetype6=2.10.2+dfsg-4 libgatk-native-bindings-java=1.0.0-2 libgcc-10-dev=10.2.0-19 libgcc-s1=10.2.0-19 libgcrypt20=1.8.7-2 libgd3=2.3.0-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgeronimo-annotation-1.3-spec-java=1.0-1 libgeronimo-interceptor-3.0-spec-java=1.0.1-4 libgif7=5.1.9-1 libgkl-java=0.8.6+dfsg-2 libgl1=1.3.2-1 libgl1-mesa-dri=20.2.3-1 libglapi-mesa=20.2.3-1 libglib2.0-0=2.66.3-2 libglvnd0=1.3.2-1 libglx-mesa0=20.2.3-1 libglx0=1.3.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.6.15-4 libgomp1=10.2.0-19 libgoogle-gson-java=2.8.6-1 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libguava-java=29.0-6 libguice-java=4.2.3-1 libhamcrest-java=1.3-9 libhawtjni-runtime-java=1.17-1 libheif1=1.9.1-1 libhogweed6=3.6-2 libhpdf-2.3.0=2.3.0+dfsg-1+b1 libhsqldb-java=2.5.1-1 libhtml-parser-perl=3.75-1+b1 libhtml-tagset-perl=3.20-4 libhtml-tree-perl=5.07-2 libhtsjdk-java=2.23.0+dfsg-2 libhttp-cookies-perl=6.09-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.26-1 libhttp-negotiate-perl=6.01-1 libhttpclient-java=4.5.13-1 libhttpcore-java=4.4.13-1 libibatis-java=2.3.4.726-6 libicu67=67.1-4 libidn2-0=2.3.0-4 libimport-into-perl=1.002005-1 libio-html-perl=1.001-1 libio-pty-perl=1:1.15-2 libio-socket-ssl-perl=2.068-1 libipc-run-perl=20200505.0-1 libisl23=0.23-1 libistack-commons-java=3.0.6-4 libitext1-java=1.4-7 libitm1=10.2.0-19 libj2ssh-java=0.2.9-5 libjansi-java=1.18-1 libjansi-native-java=1.8-1 libjaxb-api-java=2.3.1-1 libjaxb-java=2.3.0.1-9 libjaxen-java=1.1.6-4 libjaxp1.3-java=1.3.05-5 libjbig0=2.1-3.1+b2 libjetty9-java=9.4.33-1 libjoptsimple-java=5.0.4-4 libjpeg62-turbo=1:2.0.5-1.1 libjs-jquery=3.5.1+dfsg+~3.5.4-3 libjsoup-java=1.10.2-2 libjsp-api-java=2.3.4-3 libjsr305-java=0.1~+svn49-11 libjtidy-java=7+svn20110807-5 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libksba8=1.5.0-2 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.56+dfsg-1 liblightcouch-java=0.0.6-1 libllvm11=1:11.0.0-5+b1 liblog4j1.2-java=1.2.17-9 liblog4j2-java=2.11.2-1 liblqr-1-0=0.4.2-2.1 liblsan0=10.2.0-19 libltdl7=2.4.6-14 liblwp-mediatypes-perl=6.04-1 liblwp-protocol-https-perl=6.09-1 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmagickcore-6.q16-6=8:6.9.11.24+dfsg-1+b2 libmagickwand-6.q16-6=8:6.9.11.24+dfsg-1+b2 libmariadb3=1:10.5.8-3 libmaven-antrun-plugin-java=1.8-3 libmaven-archiver-java=3.2.0-2 libmaven-artifact-transfer-java=0.9.1-4 libmaven-assembly-plugin-java=3.1.0-1 libmaven-clean-plugin-java=3.1.0-1 libmaven-common-artifact-filters-java=3.0.1-3 libmaven-compiler-plugin-java=3.8.1-4 libmaven-dependency-tree-java=3.0.1-1 libmaven-enforcer-plugin-java=3.0.0~M2-1 libmaven-file-management-java=3.0.0-1 libmaven-filtering-java=3.1.1-1 libmaven-install-plugin-java=2.5.2-4 libmaven-jar-plugin-java=3.1.2-1 libmaven-parent-java=31-2 libmaven-plugin-tools-java=3.6.0-1 libmaven-reporting-api-java=3.0-1 libmaven-reporting-exec-java=1.4-2 libmaven-reporting-impl-java=3.0.0-2 libmaven-resolver-java=1.4.2-1 libmaven-resources-plugin-java=3.1.0-1 libmaven-shared-incremental-java=1.1-3 libmaven-shared-io-java=3.0.0-3 libmaven-shared-utils-java=3.3.0-1 libmaven-site-plugin-java=3.6-3 libmaven3-core-java=3.6.3-1 libmockito-java=2.23.0-1 libmodule-runtime-perl=0.016-1 libmongodb-java=3.6.3-2 libmoo-perl=2.004004-1 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-1 libncursesw6=6.2+20201114-1 libnet-http-perl=6.19-1 libnet-ssleay-perl=1.88-3+b1 libnettle8=3.6-2 libngs-java=2.10.5-1 libngs-sdk-dev=2.10.5-1 libngs-sdk2=2.10.5-1 libnpth0=1.6-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.29-1 libnss3=2:3.59-1 libnuma1=2.0.12-1+b1 libobjenesis-java=3.1-1 libopenjp2-7=2.3.1-1 libopentest4j-java=1.2.0-2 liboro-java=2.0.8a-14 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libparams-classify-perl=0.015-1+b3 libparboiled-java=1.1.7-2 libpciaccess0=0.16-1 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libpcsclite1=1.9.0-1 libpegdown-java=1.6.0-1 libperl5.32=5.32.0-5 libpicard-java=2.23.8+dfsg-3 libpipeline1=1.5.3-1 libplexus-ant-factory-java=1.0~alpha2.1-4 libplexus-archiver-java=3.6.0-2 libplexus-bsh-factory-java=1.0~alpha7-4 libplexus-build-api-java=0.0.7-4 libplexus-cipher-java=1.7-3 libplexus-classworlds-java=2.6.0-1 libplexus-compiler-java=2.8.8-1 libplexus-component-annotations-java=2.1.0-1 libplexus-container-default-java=2.1.0-1 libplexus-container-default1.5-java=2.1.0-1 libplexus-i18n-java=1.0-beta-10-5 libplexus-interpolation-java=1.26-1 libplexus-io-java=3.2.0-1 libplexus-languages-java=0.9.10-2 libplexus-sec-dispatcher-java=1.4-4 libplexus-utils2-java=3.3.0-1 libplexus-velocity-java=1.2-3 libpng16-16=1.6.37-3 libpostgresql-jdbc-java=42.2.15-1 libpq5=13.1-1+b1 libprocps8=2:3.3.16-5 libproperties-maven-plugin-java=1.0.0-2 libpython3-stdlib=3.9.0-3 libpython3.9-minimal=3.9.1~rc1-2 libpython3.9-stdlib=3.9.1~rc1-2 libqdox-java=1.12.1-3 libqdox2-java=2.0.0-1 libquadmath0=10.2.0-19 libreadline8=8.1~rc3-1 librelaxng-datatype-java=1.0+ds1-3 librngom-java=2.3.0.1-9 librole-tiny-perl=2.001004-1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsemanage-common=3.1-1 libsemanage1=3.1-1+b1 libsensors-config=1:3.6.0-2 libsensors5=1:3.6.0-2 libsepol1=3.1-1 libservlet-api-java=4.0.1-2 libservlet3.1-java=1:4.0.1-2 libsigsegv2=2.12-2 libsisu-guice-java=4.2.0-1 libsisu-inject-java=0.3.3-1 libsisu-ioc-java=2.3.0-11 libsisu-plexus-java=0.3.3-3 libslf4j-java=1.7.25-3 libsmartcols1=2.36.1-2 libsnappy-java=1.1.7.7-1 libsnappy-jni=1.1.7.7-1 libsnappy1v5=1.1.8-1 libsqlite3-0=3.33.0-1 libssl1.1=1.1.1h-1 libstax-ex-java=1.7.8-3 libstdc++-10-dev=10.2.0-19 libstdc++6=10.2.0-19 libstreambuffer-java=1.5.4-1 libstrictures-perl=2.000006-1 libsub-override-perl=0.09-2 libsub-quote-perl=2.006006-1 libsurefire-java=2.22.2-2 libsystemd0=246.6-5 libtasn1-6=4.16.0-2 libtiff5=4.1.0+git191117-2 libtimedate-perl=2.3300-1 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtry-tiny-perl=0.30-1 libtsan0=10.2.0-19 libtxw2-java=2.3.0.1-9 libubsan1=10.2.0-19 libuchardet0=0.0.7-1 libudev1=246.6-5 libunistring2=0.9.10-4 libunivocity-parsers-java=2.8.3-2 liburi-perl=5.05-1 libuuid1=2.36.1-2 libvelocity-tools-java=2.0-7 libvulkan1=1.2.154.1-1 libwagon-file-java=3.3.4-1 libwagon-http-java=3.3.4-1 libwagon-http-shaded-java=3.3.4-1 libwagon-provider-api-java=3.3.4-1 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libwebsocket-api-java=1.1-2 libwww-perl=6.49-1 libwww-robotrules-perl=6.02-1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libx11-xcb1=2:1.6.12-1 libx265-192=3.4-2 libxalan2-java=2.7.2-4 libxau6=1:1.0.8-1+b2 libxbean-reflect-java=4.5-8 libxcb-dri2-0=1.14-2 libxcb-dri3-0=1.14-2 libxcb-glx0=1.14-2 libxcb-present0=1.14-2 libxcb-sync1=1.14-2 libxcb-xfixes0=1.14-2 libxcb1=1.14-2 libxdamage1=1:1.1.5-2 libxdmcp6=1:1.1.2-3 libxerces2-java=2.12.1-1 libxext6=2:1.3.3-1+b2 libxfixes3=1:5.0.3-2 libxi6=2:1.7.10-1 libxml-commons-external-java=1.4.01-5 libxml-commons-resolver1.1-java=1.2-11 libxml2=2.9.10+dfsg-6.3 libxml2-utils=2.9.10+dfsg-6.3 libxmlgraphics-commons-java=2.4-1 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxsom-java=2.3.0.1-9 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libxz-java=1.8-2 libz3-4=4.8.9-1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mariadb-common=1:10.5.8-3 maven=3.6.3-1 maven-debian-helper=2.4 maven-repo-helper=1.9.4 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 mysql-common=5.8+1.0.5 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 netbase=6.2 node-jquery=3.5.1+dfsg+~3.5.4-3 openjdk-11-jdk=11.0.9.1+1-1 openjdk-11-jdk-headless=11.0.9.1+1-1 openjdk-11-jre=11.0.9.1+1-1 openjdk-11-jre-headless=11.0.9.1+1-1 openssl=1.1.1h-1 passwd=1:4.8.1-1 patch=2.7.6-6 patchutils=0.4.2-1 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 perl-openssl-defaults=5 pinentry-curses=1.1.0-4 po-debconf=1.0.21 procps=2:3.3.16-5 python3=3.9.0-3 python3-minimal=3.9.0-3 python3.9=3.9.1~rc1-2 python3.9-minimal=3.9.1~rc1-2 readline-common=8.1~rc3-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sgml-base=1.30 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020d-1 ucf=3.0043 unzip=6.0-25 util-linux=2.36.1-2 velocity=1.7-5 wdiff=1.2.2-2+b1 x11-common=1:7.7+21 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201221T204028Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201202T205335Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d artemis=18.1.0+dfsg-3 && mkdir -p /build/artemis-gIx8lB && dpkg-source --no-check -x /*.dsc /build/artemis-gIx8lB/artemis-18.1.0+dfsg && chown -R builduser:builduser /build/artemis-gIx8lB" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/artemis-gIx8lB/artemis-18.1.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607099297" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/artemis-gIx8lB /tmp/artemis-18.1.0+dfsg-37rwmplof bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.BZ1fu_EfCV as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.BZ1fu_EfCV Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (752 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4614 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201221T204028Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201202T205335Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.BZ1fu_EfCV Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201221T204028Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20201221T204028Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201221T204028Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201221T204028Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20201221T204028Z unstable/main amd64 Packages [11.6 MB] Fetched 34.3 MB in 30s (1156 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.BZ1fu_EfCV I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d artemis=18.1.0+dfsg-3 && mkdir -p /build/artemis-gIx8lB && dpkg-source --no-check -x /*.dsc /build/artemis-gIx8lB/artemis-18.1.0+dfsg && chown -R builduser:builduser /build/artemis-gIx8lB"' exec /tmp/mmdebstrap.BZ1fu_EfCV Reading package lists... NOTICE: 'artemis' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/artemis.git Please use: git clone https://salsa.debian.org/med-team/artemis.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 8347 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main artemis 18.1.0+dfsg-3 (dsc) [2662 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main artemis 18.1.0+dfsg-3 (tar) [8329 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main artemis 18.1.0+dfsg-3 (diff) [14.6 kB] Fetched 8347 kB in 7s (1193 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'artemis_18.1.0+dfsg-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting artemis in /build/artemis-gIx8lB/artemis-18.1.0+dfsg dpkg-source: info: unpacking artemis_18.1.0+dfsg.orig.tar.xz dpkg-source: info: unpacking artemis_18.1.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying samreader.patch dpkg-source: info: applying use-lang3.patch dpkg-source: info: applying using_system_jars_in_pom.patch dpkg-source: info: applying missing_htsjdk_dependency_in_pom.patch dpkg-source: info: applying no_install_of_provided_jars.patch dpkg-source: info: applying running_build_tests.patch dpkg-source: info: applying debianize_launcher_scripts.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/artemis-gIx8lB/artemis-18.1.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607099297" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.BZ1fu_EfCV dpkg-buildpackage: info: source package artemis dpkg-buildpackage: info: source version 18.1.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/artemis-gIx8lB/artemis-18.1.0+dfsg' dh_auto_clean bash -c "for dir in \$(find . -name target -type d); do if [ -f \$(echo \$dir | sed -e s/target\$/pom.xml/) ]; then rm -Rf \$dir; fi done" mh_unpatchpoms -partemis rm -f debian/artemis.manifest rm -f images/helix.png rm -f -rf target/jarsBuild rm -f -rf target/modifiedJars make[1]: Leaving directory '/build/artemis-gIx8lB/artemis-18.1.0+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a mh_patchpoms -partemis --debian-build --keep-pom-version --maven-repo=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg/debian/maven-repo debian/rules override_dh_auto_build make[1]: Entering directory '/build/artemis-gIx8lB/artemis-18.1.0+dfsg' dh_auto_build /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg/debian -Dmaven.repo.local=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg/debian/maven-repo --batch-mode package -DskipTests -Dnotimestamp=true -Dlocale=en_US WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$1 (file:/usr/share/maven/lib/guice.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain) WARNING: Please consider reporting this to the maintainers of com.google.inject.internal.cglib.core.$ReflectUtils$1 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for uk.ac.sanger:artemis:jar:18.1.0 [WARNING] 'dependencies.dependency.systemPath' for org.emboss:jemboss:jar should use a variable instead of a hard-coded path /usr/share/EMBOSS/jemboss/lib/jemboss.jar @ line 212, column 16 [WARNING] 'dependencies.dependency.systemPath' for org.biojava:biojava:jar should use a variable instead of a hard-coded path /usr/share/java/biojava.jar @ line 241, column 16 [WARNING] 'dependencies.dependency.systemPath' for com.github.broadinstitute:picard:jar should use a variable instead of a hard-coded path /usr/share/java/picard.jar @ line 252, column 16 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [INFO] [INFO] ------------------------< uk.ac.sanger:artemis >------------------------ [INFO] Building Artemis 18.1.0 [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-maven-3) @ artemis --- [INFO] [INFO] --- properties-maven-plugin:1.0.0:read-project-properties (load-external-properties) @ artemis --- [INFO] Quiet processing - ignoring properties cannot be loaded from File: /build/artemis-gIx8lB/artemis-18.1.0+dfsg/maven.properties [INFO] [INFO] --- maven-antrun-plugin:1.8:run (updating-software-version-number) @ artemis --- [INFO] Executing tasks main: [INFO] Executed tasks [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ artemis --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 35 resources [INFO] [INFO] --- maven-resources-plugin:3.1.0:copy-resources (copy-property-files) @ artemis --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 37 resources [INFO] [INFO] --- maven-resources-plugin:3.1.0:copy-resources (copy-icons-folder) @ artemis --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ artemis --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 585 source files to /build/artemis-gIx8lB/artemis-18.1.0+dfsg/target/classes [WARNING] /build/artemis-gIx8lB/artemis-18.1.0+dfsg/src/main/java/uk/ac/sanger/artemis/j2ssh/SshFileManager.java:[437,17] destroy() in java.lang.Thread has been deprecated and marked for removal [INFO] /build/artemis-gIx8lB/artemis-18.1.0+dfsg/src/main/java/uk/ac/sanger/artemis/io/Range.java: Some input files use or override a deprecated API. [INFO] /build/artemis-gIx8lB/artemis-18.1.0+dfsg/src/main/java/uk/ac/sanger/artemis/io/Range.java: Recompile with -Xlint:deprecation for details. [INFO] /build/artemis-gIx8lB/artemis-18.1.0+dfsg/src/main/java/uk/ac/sanger/artemis/Entry.java: Some input files use unchecked or unsafe operations. [INFO] /build/artemis-gIx8lB/artemis-18.1.0+dfsg/src/main/java/uk/ac/sanger/artemis/Entry.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ artemis --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 60 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ artemis --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 39 source files to /build/artemis-gIx8lB/artemis-18.1.0+dfsg/target/test-classes [INFO] /build/artemis-gIx8lB/artemis-18.1.0+dfsg/src/test/java/uk/ac/sanger/artemis/components/alignment/BamUtilsTest.java: Some input files use or override a deprecated API. [INFO] /build/artemis-gIx8lB/artemis-18.1.0+dfsg/src/test/java/uk/ac/sanger/artemis/components/alignment/BamUtilsTest.java: Recompile with -Xlint:deprecation for details. [INFO] /build/artemis-gIx8lB/artemis-18.1.0+dfsg/src/test/java/uk/ac/sanger/artemis/components/TransferAnnotationToolTest.java: /build/artemis-gIx8lB/artemis-18.1.0+dfsg/src/test/java/uk/ac/sanger/artemis/components/TransferAnnotationToolTest.java uses unchecked or unsafe operations. [INFO] /build/artemis-gIx8lB/artemis-18.1.0+dfsg/src/test/java/uk/ac/sanger/artemis/components/TransferAnnotationToolTest.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ artemis --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ artemis --- [INFO] Building jar: /build/artemis-gIx8lB/artemis-18.1.0+dfsg/target/artemis-18.1.0.jar [INFO] [INFO] --- maven-assembly-plugin:3.1.0:single (create-unix-release) @ artemis --- [INFO] Assemblies have been skipped per configuration of the skipAssembly parameter. [INFO] [INFO] --- maven-assembly-plugin:3.1.0:single (create-windows-release) @ artemis --- [INFO] Assemblies have been skipped per configuration of the skipAssembly parameter. [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 03:32 min [INFO] Finished at: 2021-10-11T21:59:54Z [INFO] ------------------------------------------------------------------------ # Now, 4 jars are meant to be created: they are similar to each other but # do not exactly have the same contents. We design this with the pom.xml file, # but we don't use it since it creates shaded jars. cd target/ && mkdir jarsBuild && mkdir modifiedJars && cd jarsBuild && \ jar xf ../artemis-*.jar && \ rm -f -rf META_INF/ && \ jar cf artemis.jar * && \ mv artemis.jar ../modifiedJars/ && \ cp ../modifiedJars/artemis.jar ../modifiedJars/act.jar && \ rm -f -rf artemis_sqlmap/ && \ jar cf dnaplotter.jar * && \ mv dnaplotter.jar ../modifiedJars/ && \ cp ../modifiedJars/dnaplotter.jar ../modifiedJars/bamview.jar # Preparing the classpath for jh_manifest, which will fix the classpath and # the main class. sed 's|@CLASSPATH@|/usr/share/java/biojava.jar /usr/share/java/j2ssh-core.jar /usr/share/java/ibatis.jar /usr/share/java/log4j-1.2.jar /usr/share/java/postgresql-jdbc3.jar /usr/share/java/picard.jar /usr/share/java/htsjdk.jar /usr/share/java/commons-logging.jar /usr/share/java/commons-net.jar /usr/share/java/commons-lang3.jar /usr/share/java/cglib.jar /usr/share/java/batik-codec.jar /usr/share/java/batik-dom.jar /usr/share/java/batik-ext.jar /usr/share/java/batik-svggen.jar /usr/share/java/batik-util.jar /usr/share/EMBOSS/jemboss/lib/jemboss.jar /usr/share/java/artemis.jar|g' debian/artemis.manifest.in > \ debian/artemis.manifest make[1]: Leaving directory '/build/artemis-gIx8lB/artemis-18.1.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/artemis-gIx8lB/artemis-18.1.0+dfsg' # EMBOSS_ROOT has to be passed to Maven as an environment variable. EMBOSS_ROOT="/usr" dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg/debian -Dmaven.repo.local=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg/debian/maven-repo --batch-mode test WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$1 (file:/usr/share/maven/lib/guice.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain) WARNING: Please consider reporting this to the maintainers of com.google.inject.internal.cglib.core.$ReflectUtils$1 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for uk.ac.sanger:artemis:jar:18.1.0 [WARNING] 'dependencies.dependency.systemPath' for org.emboss:jemboss:jar should use a variable instead of a hard-coded path /usr/share/EMBOSS/jemboss/lib/jemboss.jar @ line 212, column 16 [WARNING] 'dependencies.dependency.systemPath' for org.biojava:biojava:jar should use a variable instead of a hard-coded path /usr/share/java/biojava.jar @ line 241, column 16 [WARNING] 'dependencies.dependency.systemPath' for com.github.broadinstitute:picard:jar should use a variable instead of a hard-coded path /usr/share/java/picard.jar @ line 252, column 16 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [INFO] [INFO] ------------------------< uk.ac.sanger:artemis >------------------------ [INFO] Building Artemis 18.1.0 [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-enforcer-plugin:3.0.0-M2:enforce (enforce-maven-3) @ artemis --- [INFO] [INFO] --- properties-maven-plugin:1.0.0:read-project-properties (load-external-properties) @ artemis --- [INFO] Quiet processing - ignoring properties cannot be loaded from File: /build/artemis-gIx8lB/artemis-18.1.0+dfsg/maven.properties [INFO] [INFO] --- maven-antrun-plugin:1.8:run (updating-software-version-number) @ artemis --- [INFO] Executing tasks main: [INFO] Executed tasks [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ artemis --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 35 resources [INFO] [INFO] --- maven-resources-plugin:3.1.0:copy-resources (copy-property-files) @ artemis --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 37 resources [INFO] [INFO] --- maven-resources-plugin:3.1.0:copy-resources (copy-icons-folder) @ artemis --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ artemis --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ artemis --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 60 resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ artemis --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:2.22.2:test (default-test) @ artemis --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running uk.ac.sanger.artemis.plot.UserPlotTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.69 s - in uk.ac.sanger.artemis.plot.UserPlotTest [INFO] Running uk.ac.sanger.artemis.ComparisonDataFactoryTest [INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.215 s - in uk.ac.sanger.artemis.ComparisonDataFactoryTest [INFO] Running uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.601 s - in uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest [INFO] Running uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.901 s - in uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest [INFO] Running uk.ac.sanger.artemis.circular.digest.UtilsTest [WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.484 s - in uk.ac.sanger.artemis.circular.digest.UtilsTest [INFO] Running uk.ac.sanger.artemis.components.RunInterProSearchTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 11.719 s - in uk.ac.sanger.artemis.components.RunInterProSearchTest [INFO] Running uk.ac.sanger.artemis.components.ProjectPropertyTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.411 s - in uk.ac.sanger.artemis.components.ProjectPropertyTest [INFO] Running uk.ac.sanger.artemis.components.EditMenuTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.485 s - in uk.ac.sanger.artemis.components.EditMenuTest [INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.533 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest [INFO] Running uk.ac.sanger.artemis.components.alignment.BamUtilsTest testGetExistingIndexFileForFtpCram(): This test creates index files and may be slow to complete testGetIndexFileForFtpBam(): This test creates index files and may be slow to complete [INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.818 s - in uk.ac.sanger.artemis.components.alignment.BamUtilsTest [INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.585 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsTest [INFO] Running uk.ac.sanger.artemis.components.DbfetchEntrySourceTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.578 s - in uk.ac.sanger.artemis.components.DbfetchEntrySourceTest [INFO] Running uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest [WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.501 s - in uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest [INFO] Running uk.ac.sanger.artemis.components.TransferAnnotationToolTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.904 s - in uk.ac.sanger.artemis.components.TransferAnnotationToolTest [INFO] Running uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest [INFO] Tests run: 29, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.108 s - in uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest [INFO] Running uk.ac.sanger.artemis.io.GFFTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12.666 s - in uk.ac.sanger.artemis.io.GFFTest [INFO] Running uk.ac.sanger.artemis.io.GffToEMBLTest Written... /build/artemis-gIx8lB/artemis-18.1.0+dfsg/target/test-classes/data/gff/Pf3D7_01_02_v3.gff.gz.embl.gz Written... /build/artemis-gIx8lB/artemis-18.1.0+dfsg/target/test-classes/data/gff/test.gff.gz.embl.gz Written... /build/artemis-gIx8lB/artemis-18.1.0+dfsg/target/test-classes/data/gff/test_boundary.gff.gz.embl.gz [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 22.994 s - in uk.ac.sanger.artemis.io.GffToEMBLTest [INFO] Running uk.ac.sanger.artemis.io.LineGroupCacheTest [INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.598 s - in uk.ac.sanger.artemis.io.LineGroupCacheTest [INFO] Running uk.ac.sanger.artemis.io.SimpleDocumentEntryTest [INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 44.602 s - in uk.ac.sanger.artemis.io.SimpleDocumentEntryTest [INFO] Running uk.ac.sanger.artemis.io.LocationTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.12 s - in uk.ac.sanger.artemis.io.LocationTest [INFO] Running uk.ac.sanger.artemis.io.ValidateFeatureTest [INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.192 s - in uk.ac.sanger.artemis.io.ValidateFeatureTest [INFO] Running uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.788 s - in uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest [INFO] Running uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest [INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.079 s - in uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest [INFO] Running uk.ac.sanger.artemis.io.GFF3EncoderTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.015 s - in uk.ac.sanger.artemis.io.GFF3EncoderTest [INFO] Running uk.ac.sanger.artemis.io.BlastStreamFeatureTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.51 s - in uk.ac.sanger.artemis.io.BlastStreamFeatureTest [INFO] Running uk.ac.sanger.artemis.sequence.BasesTest [INFO] Tests run: 28, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 11.973 s - in uk.ac.sanger.artemis.sequence.BasesTest [INFO] Running uk.ac.sanger.artemis.sequence.StrandTest [INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.193 s - in uk.ac.sanger.artemis.sequence.StrandTest [INFO] Running uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest [INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.768 s - in uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest [INFO] Running uk.ac.sanger.artemis.FeatureSegmentTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.901 s - in uk.ac.sanger.artemis.FeatureSegmentTest [INFO] Running uk.ac.sanger.artemis.editor.EvidenceViewerTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.476 s - in uk.ac.sanger.artemis.editor.EvidenceViewerTest [INFO] Running uk.ac.sanger.artemis.util.IconManagerTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.99 s - in uk.ac.sanger.artemis.util.IconManagerTest [INFO] Running uk.ac.sanger.artemis.FeatureTest [INFO] Tests run: 75, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 278.904 s - in uk.ac.sanger.artemis.FeatureTest [INFO] [INFO] Results: [INFO] [WARNING] Tests run: 297, Failures: 0, Errors: 0, Skipped: 5 [INFO] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 12:15 min [INFO] Finished at: 2021-10-11T22:12:29Z [INFO] ------------------------------------------------------------------------ make[1]: Leaving directory '/build/artemis-gIx8lB/artemis-18.1.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg/debian -Dmaven.repo.local=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg/debian/maven-repo --batch-mode -Ddebian.dir=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg/debian -Ddebian.package=artemis -Dmaven.repo.local=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg/debian/maven-repo -Dinstall.to.usj=true org.debian.maven:debian-maven-plugin:2.4:install WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$1 (file:/usr/share/maven/lib/guice.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain) WARNING: Please consider reporting this to the maintainers of com.google.inject.internal.cglib.core.$ReflectUtils$1 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations WARNING: All illegal access operations will be denied in a future release [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for uk.ac.sanger:artemis:jar:18.1.0 [WARNING] 'dependencies.dependency.systemPath' for org.emboss:jemboss:jar should use a variable instead of a hard-coded path /usr/share/EMBOSS/jemboss/lib/jemboss.jar @ line 212, column 16 [WARNING] 'dependencies.dependency.systemPath' for org.biojava:biojava:jar should use a variable instead of a hard-coded path /usr/share/java/biojava.jar @ line 241, column 16 [WARNING] 'dependencies.dependency.systemPath' for com.github.broadinstitute:picard:jar should use a variable instead of a hard-coded path /usr/share/java/picard.jar @ line 252, column 16 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [INFO] [INFO] ------------------------< uk.ac.sanger:artemis >------------------------ [INFO] Building Artemis 18.1.0 [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- debian-maven-plugin:2.4:install (default-cli) @ artemis --- [INFO] Cleaning pom file: /build/artemis-gIx8lB/artemis-18.1.0+dfsg/pom.xml.save with options: [INFO] --keep-pom-version --package=artemis [INFO] --rules=/build/artemis-gIx8lB/artemis-18.1.0+dfsg/debian/maven.rules [INFO] --ignore-rules=/build/artemis-gIx8lB/artemis-18.1.0+dfsg/debian/maven.ignoreRules [INFO] --published-rules=/build/artemis-gIx8lB/artemis-18.1.0+dfsg/debian/maven.publishedRules [INFO] Install jar file into Maven repo: /build/artemis-gIx8lB/artemis-18.1.0+dfsg/target/artemis-18.1.0.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 5.217 s [INFO] Finished at: 2021-10-11T22:12:46Z [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -partemis --base-directory=/build/artemis-gIx8lB/artemis-18.1.0\+dfsg --non-explore Analysing pom.xml... > dpkg --search /usr/share/maven-repo/org/emboss/jemboss/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/org/emboss/jemboss Oct 11, 2021 10:13:15 PM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/artemis-gIx8lB/artemis-18.1.0+dfsg/pom.xml: Dependency not found org.emboss:jemboss:jar:debian ERROR: pom.xml: dependency is not packaged in the Maven repository for Debian: org.emboss:jemboss:debian -------- Some problems were found in this project, exiting... mh_unpatchpoms -partemis debian/rules override_dh_install make[1]: Entering directory '/build/artemis-gIx8lB/artemis-18.1.0+dfsg' dh_install # Using imagemagick to convert the icon from gif to png. mkdir -p debian/artemis/usr/share/icons/hicolor/96x96/apps/ convert src/main/resources/images/helix.gif -resize 96x96\! debian/artemis/usr/share/icons/hicolor/96x96/apps/helix.png # Defining the right classpaths and main classes. jh_manifest make[1]: Leaving directory '/build/artemis-gIx8lB/artemis-18.1.0+dfsg' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_icons -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package artemis: substitution variable ${java:Depends} used, but is not defined dpkg-gencontrol: warning: package artemis: substitution variable ${maven:CompileDepends} unused, but is defined dpkg-gencontrol: warning: package artemis: substitution variable ${maven:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'artemis' in '../artemis_18.1.0+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../artemis_18.1.0+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/artemis-gIx8lB /tmp/artemis-18.1.0+dfsg-37rwmplof I: cleaning package lists and apt cache... W: deleting files in /tmp: dummy4243586966845389151dummy W: deleting files in /tmp: hsperfdata_builduser W: deleting files in /tmp: out.gff3657310284935240443 W: deleting files in /tmp: out.blast16876263270578137849 W: deleting files in /tmp: dummy5260473883175721540dummy W: deleting files in /tmp: dummy239764198087726584dummy W: deleting files in /tmp: dummy4591094470210925657dummy W: deleting files in /tmp: dummy6163217332337749923dummy W: deleting files in /tmp: dummy11788883032300457670dummy W: deleting files in /tmp: dummy2701972925321409367dummy W: deleting files in /tmp: out.gtf12308858612518127797 W: deleting files in /tmp: out.fa8927545887168822270 W: deleting files in /tmp: out.gbk16515409894904719938 W: deleting files in /tmp: out.gff39524685193584599708 W: deleting files in /tmp: hsperfdata_root W: deleting files in /tmp: dummy12832006807355077495dummy W: deleting files in /tmp: dummy9329701904926726205dummy W: deleting files in /tmp: dummy2018660028941439905dummy W: deleting files in /tmp: dummy17301909921004991705dummy W: deleting files in /tmp: dummy14309070476764904325dummy W: deleting files in /tmp: out.embl18388618997704604337 W: deleting files in /tmp: dummy4233315925806865132dummy W: deleting files in /tmp: dummy9644351144158869554dummy I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.BZ1fu_EfCV... I: success in 2311.5923 seconds md5: artemis_18.1.0+dfsg-3_amd64.deb: OK sha1: artemis_18.1.0+dfsg-3_amd64.deb: OK sha256: artemis_18.1.0+dfsg-3_amd64.deb: OK Checksums: OK