Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/a/ariba/ariba_2.14.6+ds-3_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/ariba-2.14.6+ds-3tabprufc/ariba_2.14.6+ds-3_amd64.buildinfo Get source package info: ariba=2.14.6+ds-3 Source URL: http://snapshot.notset.fr/mr/package/ariba/2.14.6+ds-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=asciidoctor=2.0.16-2 autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 bamtools=2.5.1+dfsg-10+b1 base-files=12 base-passwd=3.5.52 bash=5.1-5+b1 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 blt=2.5.3+dfsg-4.1 bowtie2=2.4.4-1 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bwa=0.7.17-6+b1 bzip2=1.0.8-5 ca-certificates=20211016 cd-hit=4.8.1-4 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-13 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-python=5.20211217 dh-strip-nondeterminism=1.12.1-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 fastaq=3.17.0-4 file=1:5.41-2 findutils=4.8.0-1 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-lyx=2.3.6-1 fonts-urw-base35=20200910-1 g++=4:11.2.0-2 g++-11=11.2.0-13 gawk=1:5.1.0-1 gcc=4:11.2.0-2 gcc-11=11.2.0-13 gcc-11-base=11.2.0-13 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 help2man=1.48.5 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-13 libatomic1=11.2.0-13 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbamtools2.5.1=2.5.1+dfsg-10+b1 libbinutils=2.37-10 libblas3=3.10.0-1 libblkid1=2.37.2-4 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-5 libc-bin=2.33-1 libc-dev-bin=2.33-1 libc6=2.33-1 libc6-dev=2.33-1 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcapnp-0.7.0=0.7.0-7 libcc1-0=11.2.0-13 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.26-1 libcrypt1=1:4.4.26-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcurl3-gnutls=7.79.1-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdeflate0=1.8-1 libdpkg-perl=1.21.1 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.1-3 libexpat1-dev=2.4.1-3 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.1-1 libfml-dev=0.1+git20190320.b499514-1+b1 libfml0=0.1+git20190320.b499514-1+b1 libfontconfig1=2.13.1-4.2 libfreetype6=2.11.0+dfsg-1 libfribidi0=1.0.8-2 libgcc-11-dev=11.2.0-13 libgcc-s1=11.2.0-13 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran5=11.2.0-13 libglib2.0-0=2.70.2-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-2 libgomp1=11.2.0-13 libgpg-error0=1.42-3 libgraphite2-3=1.3.14-1 libgsl27=2.7.1+dfsg-3 libgslcblas0=2.7.1+dfsg-3 libgssapi-krb5-2=1.18.3-7 libharfbuzz0b=2.7.4-1 libhat-trie0=0.1.2-2 libhogweed6=3.7.3-1 libhts3=1.13+ds-2 libhtscodecs2=1.1.1-3+b1 libicu67=67.1-7 libidn2-0=2.3.2-2 libimagequant0=2.12.2-1.1 libisl23=0.24-2 libitm1=11.2.0-13 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.1.2-1 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjs-jquery-ui=1.13.0+dfsg-1 libjs-sphinxdoc=4.3.1-2 libjs-underscore=1.9.1~dfsg-4 libjsoncpp25=1.9.5-2 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-1 liblbfgsb0=3.0+dfsg.3-10 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.59+dfsg-1 liblocale-gettext-perl=1.07-4+b1 liblsan0=11.2.0-13 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libminimap-dev=0.2-6 libminimap0=0.2-6 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libmurmurhash2=1.5-3 libncurses6=6.3-1 libncursesw6=6.3-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnlopt0=2.7.1-2 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopenjp2-7=2.4.0-3 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpng16-16=1.6.37-3 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libpython3-all-dev=3.9.8-1 libpython3-dev=3.9.8-1 libpython3-stdlib=3.9.8-1 libpython3.10=3.10.1-2 libpython3.10-dev=3.10.1-2 libpython3.10-minimal=3.10.1-2 libpython3.10-stdlib=3.10.1-2 libpython3.9=3.9.9-2 libpython3.9-dev=3.9.9-2 libpython3.9-minimal=3.9.9-2 libpython3.9-stdlib=3.9.9-2 libqhull-r8.0=2020.2-4 libquadmath0=11.2.0-13 libraqm0=0.7.0-4 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libruby2.7=2.7.5-1 libsasl2-2=2.1.27+dfsg2-2 libsasl2-modules-db=2.1.27+dfsg2-2 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-4 libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libssw0=1.1-13 libstdc++-11-dev=11.2.0-13 libstdc++6=11.2.0-13 libsub-override-perl=0.09-2 libsystemd0=249.7-1 libtasn1-6=4.18.0-4 libtcl8.6=8.6.12+dfsg-1 libtiff5=4.3.0-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtk8.6=8.6.12-1 libtool=2.4.6-15 libtsan0=11.2.0-13 libubsan1=11.2.0-13 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxft2=2.3.2-2 libxml2=2.9.12+dfsg-5+b1 libxrender1=1:0.9.10-1 libxslt1.1=1.1.34-4 libxss1=1:1.2.3-1 libyaml-0-2=0.2.2-1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.70+nmu1 make=4.3-4.1 man-db=2.9.4-2 mash=2.3+dfsg-1+b1 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 mummer=3.23+dfsg-7 ncurses-base=6.3-1 ncurses-bin=6.3-1 openssl=1.1.1l-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 python-matplotlib-data=3.5.0-5 python3=3.9.8-1 python3-all=3.9.8-1 python3-all-dev=3.9.8-1 python3-appdirs=1.4.4-1 python3-attr=20.3.0-1 python3-biopython=1.79+dfsg-1+b1 python3-brotli=1.0.9-2+b3 python3-bs4=4.10.0-2 python3-cycler=0.11.0-1 python3-dateutil=2.8.1-6 python3-decorator=4.4.2-2 python3-defcon=0.9.0-1 python3-dendropy=4.5.2-1 python3-dev=3.9.8-1 python3-distutils=3.9.9-3 python3-fonttools=4.28.3-1 python3-fs=2.4.12-1 python3-importlib-metadata=4.6.4-1 python3-iniconfig=1.1.1-1 python3-joblib=0.17.0-4 python3-kiwisolver=1.3.2-1+b1 python3-lib2to3=3.9.9-3 python3-lxml=4.6.4-1 python3-lz4=3.1.3+dfsg-1+b1 python3-matplotlib=3.5.0-5 python3-minimal=3.9.8-1 python3-more-itertools=8.10.0-2 python3-mpmath=1.2.1-2 python3-numpy=1:1.21.4-2 python3-packaging=21.3-1 python3-pil=8.4.0-1 python3-pil.imagetk=8.4.0-1 python3-pkg-resources=59.6.0-1 python3-pluggy=0.13.0-7.1 python3-py=1.10.0-1 python3-pymummer=0.11.0-2 python3-pyparsing=2.4.7-1 python3-pysam=0.17.0+ds-2+b1 python3-pytest=6.2.5-1 python3-renderpm=3.6.2-1 python3-reportlab=3.6.2-1 python3-reportlab-accel=3.6.2-1 python3-scipy=1.7.1-2+b1 python3-setuptools=59.6.0-1 python3-six=1.16.0-2 python3-soupsieve=2.3.1-1 python3-sympy=1.7.1-3 python3-tk=3.9.9-3 python3-toml=0.10.2-1 python3-tz=2021.3-1 python3-yaml=5.4.1-1+b1 python3-zipp=1.0.0-3 python3.10=3.10.1-2 python3.10-dev=3.10.1-2 python3.10-minimal=3.10.1-2 python3.9=3.9.9-2 python3.9-dev=3.9.9-2 python3.9-minimal=3.9.9-2 rake=13.0.3-1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 ruby=1:2.7.6 ruby-asciidoctor=2.0.16-2 ruby-minitest=5.13.0-1 ruby-net-telnet=0.1.1-2 ruby-power-assert=1.1.7-2 ruby-rubygems=3.2.27-3 ruby-test-unit=3.3.9-1 ruby-xmlrpc=0.3.2-1 ruby2.7=2.7.5-1 rubygems-integration=1.18 samtools=1.13-4 sed=4.8-1 sensible-utils=0.0.17 spades=3.13.1+dfsg-2+b2 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 tk8.6-blt2.5=2.5.3+dfsg-4.1 tzdata=2021e-1 ucf=3.0043 unicode-data=14.0.0-1.1 util-linux=2.37.2-4 x11-common=1:7.7+23 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211221T034239Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211221T034239Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211225T152514Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211217T210032Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d ariba=2.14.6+ds-3 && mkdir -p /build/ariba-Y2UE1J && dpkg-source --no-check -x /*.dsc /build/ariba-Y2UE1J/ariba-2.14.6+ds && chown -R builduser:builduser /build/ariba-Y2UE1J" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/ariba-Y2UE1J/ariba-2.14.6+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639853763" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/ariba-Y2UE1J /tmp/ariba-2.14.6+ds-3tabprufc bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211217T210032Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.M7ImLEuRkr as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.M7ImLEuRkr Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211217T210032Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211217T210032Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (529 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4680 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-1) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211221T034239Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211221T034239Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211225T152514Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211217T210032Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.M7ImLEuRkr Get:1 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211225T152514Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20211217T210032Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main Sources [11.8 MB] Get:5 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211225T152514Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20211225T152514Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20211225T152514Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211225T152514Z unstable/main amd64 Packages [12.0 MB] Fetched 35.3 MB in 29s (1216 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.M7ImLEuRkr I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d ariba=2.14.6+ds-3 && mkdir -p /build/ariba-Y2UE1J && dpkg-source --no-check -x /*.dsc /build/ariba-Y2UE1J/ariba-2.14.6+ds && chown -R builduser:builduser /build/ariba-Y2UE1J"' exec /tmp/mmdebstrap.M7ImLEuRkr Reading package lists... NOTICE: 'ariba' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ariba.git Please use: git clone https://salsa.debian.org/med-team/ariba.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1983 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main ariba 2.14.6+ds-3 (dsc) [2321 B] Get:2 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main ariba 2.14.6+ds-3 (tar) [1970 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211221T034239Z bookworm/main ariba 2.14.6+ds-3 (diff) [9824 B] Fetched 1983 kB in 2s (1202 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'ariba_2.14.6+ds-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting ariba in /build/ariba-Y2UE1J/ariba-2.14.6+ds dpkg-source: info: unpacking ariba_2.14.6+ds.orig.tar.xz dpkg-source: info: unpacking ariba_2.14.6+ds-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs_for_extension.patch dpkg-source: info: applying use_bwa_compatible_fermi-lite.patch dpkg-source: info: applying add-testdata.patch dpkg-source: info: applying disable-tests-with-internet-access.patch dpkg-source: info: applying support-pymummer-0.11.patch dpkg-source: info: applying run-debian-spades-wrapper.patch dpkg-source: info: applying port-to-pytest.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/ariba-Y2UE1J/ariba-2.14.6+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639853763" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.M7ImLEuRkr dpkg-buildpackage: info: source package ariba dpkg-buildpackage: info: source version 2.14.6+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/ariba-Y2UE1J/ariba-2.14.6+ds' rm -rf /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/man dh_auto_clean -- I: pybuild base:237: python3.10 setup.py clean running clean removing '/build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it I: pybuild base:237: python3.9 setup.py clean running clean removing '/build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it make[1]: Leaving directory '/build/ariba-Y2UE1J/ariba-2.14.6+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:237: python3.10 setup.py config running config I: pybuild base:237: python3.9 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3.10 setup.py build running build running build_py creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/ref_seq_chooser.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/refdata_query.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/card_record.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/summary_cluster.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/vfdb_parser.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/report_flag_expander.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/scaffold_graph.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/assembly_compare.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/mlst_profile.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/pubmlst_ref_preparer.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/read_filter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/bam_parse.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/megares_data_finder.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/summary.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/megares_zip_parser.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/mlst_reporter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/samtools_variants.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/summary_cluster_variant.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/link.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/external_progs.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/flag.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/report_filter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/tb.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/read_store.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/pubmlst_getter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/sequence_variant.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/report.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/histogram.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/summary_sample.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/mic_plotter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/faidx.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/common.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/cdhit.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/ref_genes_getter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/mapping.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/aln_to_metadata.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/cluster.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/ref_preparer.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/clusters.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/versions.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/sequence_metadata.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/__init__.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/reference_data.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/assembly_variants.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba copying ariba/assembly.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/pubmlst_ref_preparer_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/vfdb_parser_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/reference_data_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/read_store_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/report_flag_expander_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/mic_plotter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/summary_sample_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/report_filter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/mlst_reporter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/read_filter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/aln_to_metadata_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/assembly_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/sequence_variant_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/sequence_metadata_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/pubmlst_getter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/summary_cluster_variant_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/tb_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/flag_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/link_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/faidx_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/histogram_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/ref_genes_getter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/external_progs_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/bam_parse_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/ref_preparer_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/samtools_variants_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/clusters_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/summary_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/mlst_profile_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/summary_cluster_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/test_refdata_query.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/assembly_compare_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/card_record_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/versions_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/megares_zip_parser_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/ref_seq_chooser_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/cdhit_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/cluster_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/megares_data_finder_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/scaffold_graph_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/__init__.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/common_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/mapping_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/ncbi_getter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests copying ariba/tests/assembly_variants_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/expandflag.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/version.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/prepareref.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/run.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/summary.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/flag.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/micplot.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/prepareref_tb.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/reportfilter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/refquery.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/pubmlstget.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/pubmlstspecies.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/__init__.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/getref.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks copying ariba/tasks/aln2meta.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/test_run_data copying ariba/test_run_data/metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_seqs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/test_run_data creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.gb -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.fa.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_bad.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/dummy.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_clean.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_long.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.expected.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_short.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_rename_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.rename -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_fofn -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.out.csv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_data_info_file -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.params.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_rename_sequences.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.3 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_good.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_fasta_file.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_init.fofn -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_write_report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_ok.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parser_write_files creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene running build_ext building 'minimap_ariba' extension creating build creating build/temp.linux-x86_64-3.10 creating build/temp.linux-x86_64-3.10/ariba creating build/temp.linux-x86_64-3.10/ariba/ext x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/ariba-Y2UE1J/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/minimap -I/usr/include/python3.10 -c ariba/ext/minimap_ariba.cpp -o build/temp.linux-x86_64-3.10/ariba/ext/minimap_ariba.o ariba/ext/minimap_ariba.cpp: In function ‘bool readMappingOk(const mm_reg1_t*, const mm_idx_t*, const kseq_t*, uint32_t)’: ariba/ext/minimap_ariba.cpp:371:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 371 | if (r->qe - r->qs < std::min((unsigned) 50, (int) 0.5 * ks->seq.l)) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ariba/ext/minimap_ariba.cpp:381:26: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 381 | startOk = (r->qs < endTolerance || refLength - r->re < endTolerance); | ~~~~~~^~~~~~~~~~~~~~ ariba/ext/minimap_ariba.cpp:382:60: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 382 | endOk = (ks->seq.l - r->qe < endTolerance || r->rs < endTolerance); | ~~~~~~^~~~~~~~~~~~~~ ariba/ext/minimap_ariba.cpp:386:26: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 386 | startOk = (r->qs < endTolerance || r->rs < endTolerance); | ~~~~~~^~~~~~~~~~~~~~ ariba/ext/minimap_ariba.cpp:386:50: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 386 | startOk = (r->qs < endTolerance || r->rs < endTolerance); | ~~~~~~^~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/ariba-Y2UE1J/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/ariba/ext/minimap_ariba.o -o /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/minimap_ariba.cpython-310-x86_64-linux-gnu.so -lz -lminimap building 'fermilite_ariba' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/ariba-Y2UE1J/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c ariba/ext/fml-asm_ariba.cpp -o build/temp.linux-x86_64-3.10/ariba/ext/fml-asm_ariba.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/ariba-Y2UE1J/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/ariba/ext/fml-asm_ariba.o -o /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/fermilite_ariba.cpython-310-x86_64-linux-gnu.so -lz -lfml building 'vcfcall_ariba' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/ariba-Y2UE1J/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c ariba/ext/vcfcall_ariba.cpp -o build/temp.linux-x86_64-3.10/ariba/ext/vcfcall_ariba.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/ariba-Y2UE1J/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/ariba/ext/vcfcall_ariba.o -o /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/vcfcall_ariba.cpython-310-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.10 copying and adjusting scripts/ariba -> build/scripts-3.10 changing mode of build/scripts-3.10/ariba from 644 to 755 I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/ref_seq_chooser.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/refdata_query.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/card_record.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/summary_cluster.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/vfdb_parser.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/report_flag_expander.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/scaffold_graph.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/assembly_compare.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/mlst_profile.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/pubmlst_ref_preparer.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/read_filter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/bam_parse.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/megares_data_finder.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/summary.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/megares_zip_parser.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/mlst_reporter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/samtools_variants.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/summary_cluster_variant.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/link.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/external_progs.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/flag.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/report_filter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/tb.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/read_store.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/pubmlst_getter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/sequence_variant.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/report.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/histogram.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/summary_sample.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/mic_plotter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/faidx.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/common.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/cdhit.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/ref_genes_getter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/mapping.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/aln_to_metadata.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/cluster.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/ref_preparer.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/clusters.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/versions.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/sequence_metadata.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/__init__.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/reference_data.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/assembly_variants.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba copying ariba/assembly.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/pubmlst_ref_preparer_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/vfdb_parser_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/reference_data_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/read_store_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/report_flag_expander_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/mic_plotter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/summary_sample_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/report_filter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/mlst_reporter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/read_filter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/aln_to_metadata_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/assembly_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/sequence_variant_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/sequence_metadata_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/pubmlst_getter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/summary_cluster_variant_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/tb_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/flag_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/link_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/faidx_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/histogram_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/ref_genes_getter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/external_progs_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/bam_parse_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/ref_preparer_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/samtools_variants_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/clusters_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/summary_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/mlst_profile_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/summary_cluster_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/test_refdata_query.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/assembly_compare_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/card_record_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/versions_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/megares_zip_parser_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/ref_seq_chooser_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/cdhit_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/cluster_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/megares_data_finder_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/scaffold_graph_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/__init__.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/common_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/mapping_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/ncbi_getter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests copying ariba/tests/assembly_variants_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/expandflag.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/version.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/prepareref.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/run.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/summary.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/flag.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/micplot.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/prepareref_tb.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/reportfilter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/refquery.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/pubmlstget.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/pubmlstspecies.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/__init__.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/getref.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks copying ariba/tasks/aln2meta.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data copying ariba/test_run_data/metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_seqs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.gb -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181221.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.fa.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_bad.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/dummy.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_clean.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_long.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.expected.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_too_short.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_rename_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.rename -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_fofn -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.out.csv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_to_matrix.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_data_info_file -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_db.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.params.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_sort_file.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_fix_in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_init_refdata.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refdata_query_prepareref.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_rename_sequences.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads.make_link.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.3 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/test_common_cat_files.in.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_good.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_flag_expander.run.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_fasta_file.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_run.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_init.fofn -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_write_report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_parse.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_ok.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_count_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene running build_ext building 'minimap_ariba' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/ariba creating build/temp.linux-x86_64-3.9/ariba/ext x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/ariba-Y2UE1J/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/minimap -I/usr/include/python3.9 -c ariba/ext/minimap_ariba.cpp -o build/temp.linux-x86_64-3.9/ariba/ext/minimap_ariba.o ariba/ext/minimap_ariba.cpp: In function ‘bool readMappingOk(const mm_reg1_t*, const mm_idx_t*, const kseq_t*, uint32_t)’: ariba/ext/minimap_ariba.cpp:371:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 371 | if (r->qe - r->qs < std::min((unsigned) 50, (int) 0.5 * ks->seq.l)) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ariba/ext/minimap_ariba.cpp:381:26: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 381 | startOk = (r->qs < endTolerance || refLength - r->re < endTolerance); | ~~~~~~^~~~~~~~~~~~~~ ariba/ext/minimap_ariba.cpp:382:60: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 382 | endOk = (ks->seq.l - r->qe < endTolerance || r->rs < endTolerance); | ~~~~~~^~~~~~~~~~~~~~ ariba/ext/minimap_ariba.cpp:386:26: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 386 | startOk = (r->qs < endTolerance || r->rs < endTolerance); | ~~~~~~^~~~~~~~~~~~~~ ariba/ext/minimap_ariba.cpp:386:50: warning: comparison of integer expressions of different signedness: ‘const int32_t’ {aka ‘const int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 386 | startOk = (r->qs < endTolerance || r->rs < endTolerance); | ~~~~~~^~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/ariba-Y2UE1J/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/ariba/ext/minimap_ariba.o -o /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/minimap_ariba.cpython-39-x86_64-linux-gnu.so -lz -lminimap building 'fermilite_ariba' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/ariba-Y2UE1J/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c ariba/ext/fml-asm_ariba.cpp -o build/temp.linux-x86_64-3.9/ariba/ext/fml-asm_ariba.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/ariba-Y2UE1J/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/ariba/ext/fml-asm_ariba.o -o /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/fermilite_ariba.cpython-39-x86_64-linux-gnu.so -lz -lfml building 'vcfcall_ariba' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/ariba-Y2UE1J/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c ariba/ext/vcfcall_ariba.cpp -o build/temp.linux-x86_64-3.9/ariba/ext/vcfcall_ariba.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/ariba-Y2UE1J/ariba-2.14.6+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/ariba/ext/vcfcall_ariba.o -o /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/vcfcall_ariba.cpython-39-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting scripts/ariba -> build/scripts-3.9 changing mode of build/scripts-3.9/ariba from 644 to 755 dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/ariba/ -a -O--buildsystem=pybuild I: pybuild base:237: /usr/bin/python3.10 setup.py install --root /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext running build_scripts running install_lib creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/ref_seq_chooser.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/refdata_query.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/card_record.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/summary_cluster.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/vfdb_parser.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/report_flag_expander.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/scaffold_graph.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/assembly_compare.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/mlst_profile.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/read_filter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/bam_parse.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/megares_data_finder.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/summary.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/megares_zip_parser.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/mlst_reporter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/samtools_variants.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/summary_cluster_variant.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/link.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/external_progs.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/flag.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/report_filter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/read_store.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/pubmlst_getter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/sequence_variant.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/report.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/histogram.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/summary_sample.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/mic_plotter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/faidx.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/common.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/cdhit.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/ref_genes_getter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/mapping.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/aln_to_metadata.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/cluster.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/ref_preparer.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/clusters.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/versions.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/sequence_metadata.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/__init__.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/reference_data.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/assembly_variants.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/assembly.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/reference_data_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/read_store_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/mic_plotter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/summary_sample_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/report_filter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/mlst_reporter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/read_filter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/assembly_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/sequence_variant_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/tb_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/flag_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/link_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/faidx_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/histogram_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/ref_genes_getter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/external_progs_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/bam_parse_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/ref_preparer_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/samtools_variants_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/clusters_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/summary_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/mlst_profile_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/summary_cluster_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/test_refdata_query.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/assembly_compare_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/card_record_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/versions_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/ref_seq_chooser_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/cdhit_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/cluster_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/__init__.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/common_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/mapping_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/ncbi_getter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/assembly_variants_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/dummy.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/link_test_init.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/test_common_cat_files.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/refdata_query_prepareref creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run.out creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_run_with_tb.ref creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/megares_zip_parser_write_files creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/expandflag.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/version.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/prepareref.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/run.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/summary.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/flag.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/micplot.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/prepareref_tb.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/reportfilter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/refquery.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/pubmlstget.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/__init__.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/getref.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tasks/aln2meta.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/test_run_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/test_run_data/metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/test_run_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/test_run_data/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/test_run_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/test_run_data/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/test_run_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/test_run_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/test_run_data/ref_seqs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/test_run_data creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data/panel.20190102.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data/panel.20181221.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data/panel.20181115.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data/NC_000962.3.gb -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data/panel.20181221.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data/panel.20181115.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/minimap_ariba.cpython-310-x86_64-linux-gnu.so -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/fermilite_ariba.cpython-310-x86_64-linux-gnu.so -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.10_ariba/build/vcfcall_ariba.cpython-310-x86_64-linux-gnu.so -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/refdata_query.py to refdata_query.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/card_record.py to card_record.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/read_filter.py to read_filter.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/bam_parse.py to bam_parse.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/summary.py to summary.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/link.py to link.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/external_progs.py to external_progs.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/flag.py to flag.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/report_filter.py to report_filter.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tb.py to tb.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/read_store.py to read_store.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/report.py to report.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/histogram.py to histogram.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/summary_sample.py to summary_sample.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/faidx.py to faidx.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/common.py to common.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/cdhit.py to cdhit.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/mapping.py to mapping.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/cluster.py to cluster.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/clusters.py to clusters.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/versions.py to versions.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/sequence_metadata.py to sequence_metadata.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/__init__.py to __init__.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/reference_data.py to reference_data.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/assembly.py to assembly.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/link_test.py to link_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/ref_seq_chooser_test.py to ref_seq_chooser_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/__init__.py to __init__.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/common_test.py to common_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/mapping_test.py to mapping_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/version.py to version.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/run.py to run.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/summary.py to summary.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/flag.py to flag.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/micplot.py to micplot.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/refquery.py to refquery.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/test.py to test.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/pubmlstget.py to pubmlstget.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/__init__.py to __init__.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/getref.py to getref.cpython-310.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-310.pyc running install_egg_info running egg_info creating ariba.egg-info writing ariba.egg-info/PKG-INFO writing dependency_links to ariba.egg-info/dependency_links.txt writing requirements to ariba.egg-info/requires.txt writing top-level names to ariba.egg-info/top_level.txt writing manifest file 'ariba.egg-info/SOURCES.txt' reading manifest file 'ariba.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.h' under directory 'third_party' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ariba.egg-info/SOURCES.txt' Copying ariba.egg-info to /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.10/dist-packages/ariba-2.14.6.egg-info Skipping SOURCES.txt running install_scripts creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/bin copying build/scripts-3.10/ariba -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/bin changing mode of /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/bin/ariba to 755 I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext running build_scripts running install_lib creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/ref_seq_chooser.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/refdata_query.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/card_record.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/summary_cluster.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/vfdb_parser.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/report_flag_expander.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/scaffold_graph.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/assembly_compare.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/mlst_profile.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/read_filter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/bam_parse.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/megares_data_finder.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/summary.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/megares_zip_parser.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/mlst_reporter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/samtools_variants.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/summary_cluster_variant.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/link.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/external_progs.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/flag.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/report_filter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/read_store.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/pubmlst_getter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/sequence_variant.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/report.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/histogram.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/summary_sample.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/mic_plotter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/faidx.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/common.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/cdhit.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/ref_genes_getter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/mapping.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/aln_to_metadata.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/cluster.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/ref_preparer.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/clusters.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/versions.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/sequence_metadata.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/__init__.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/reference_data.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/assembly_variants.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/assembly.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/reference_data_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/read_store_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/mic_plotter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/summary_sample_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/report_filter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/mlst_reporter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/read_filter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/assembly_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/sequence_variant_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/tb_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/flag_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/link_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/faidx_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/histogram_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/ref_genes_getter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/external_progs_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/bam_parse_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/ref_preparer_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/samtools_variants_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/clusters_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/summary_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/mlst_profile_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/summary_cluster_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/test_refdata_query.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/assembly_compare_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/card_record_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/versions_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/ref_seq_chooser_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/cdhit_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/cluster_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/__init__.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/common_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/mapping_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/ncbi_getter_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/assembly_variants_test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/dummy.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/test_common_cat_files.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/refdata_query_prepareref creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run.out creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_run_with_tb.ref creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/megares_zip_parser_write_files copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/megares_zip_parser_write_files creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/expandflag.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/version.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/prepareref.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/run.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/summary.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/flag.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/micplot.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/prepareref_tb.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/reportfilter.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/refquery.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/test.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/pubmlstget.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/__init__.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/getref.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tasks/aln2meta.py -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/test_run_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data/metadata.tsv -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/test_run_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data/reads_2.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/test_run_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data/reads_1.fq -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/test_run_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/test_run_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/test_run_data/ref_seqs.fa -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/test_run_data creating /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/panel.20190102.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/panel.20181221.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/panel.20181115.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/NC_000962.3.gb -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/panel.20181221.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/panel.20181115.json -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb_data copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/minimap_ariba.cpython-39-x86_64-linux-gnu.so -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/fermilite_ariba.cpython-39-x86_64-linux-gnu.so -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages copying /build/ariba-Y2UE1J/ariba-2.14.6+ds/.pybuild/cpython3_3.9_ariba/build/vcfcall_ariba.cpython-39-x86_64-linux-gnu.so -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/refdata_query.py to refdata_query.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/card_record.py to card_record.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/read_filter.py to read_filter.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/bam_parse.py to bam_parse.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/summary.py to summary.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/link.py to link.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/external_progs.py to external_progs.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/flag.py to flag.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/report_filter.py to report_filter.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tb.py to tb.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/read_store.py to read_store.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/report.py to report.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/histogram.py to histogram.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/summary_sample.py to summary_sample.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/faidx.py to faidx.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/common.py to common.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/cdhit.py to cdhit.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/mapping.py to mapping.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/cluster.py to cluster.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/clusters.py to clusters.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/versions.py to versions.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/sequence_metadata.py to sequence_metadata.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/reference_data.py to reference_data.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/assembly.py to assembly.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/link_test.py to link_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/ref_seq_chooser_test.py to ref_seq_chooser_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/common_test.py to common_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/mapping_test.py to mapping_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/version.py to version.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/run.py to run.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/summary.py to summary.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/flag.py to flag.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/micplot.py to micplot.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/refquery.py to refquery.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/test.py to test.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/pubmlstget.py to pubmlstget.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/__init__.py to __init__.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/getref.py to getref.cpython-39.pyc byte-compiling /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-39.pyc running install_egg_info running egg_info writing ariba.egg-info/PKG-INFO writing dependency_links to ariba.egg-info/dependency_links.txt writing requirements to ariba.egg-info/requires.txt writing top-level names to ariba.egg-info/top_level.txt reading manifest file 'ariba.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.h' under directory 'third_party' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ariba.egg-info/SOURCES.txt' Copying ariba.egg-info to /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.9/dist-packages/ariba-2.14.6.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.9/ariba -> /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/bin changing mode of /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba/usr/bin/ariba to 755 dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/ariba-Y2UE1J/ariba-2.14.6+ds' mkdir -p /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/man asciidoctor -a docdate='' -b manpage -o /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/man/ariba.1 /build/ariba-Y2UE1J/ariba-2.14.6+ds/debian/ariba.1.adoc dh_installman -- make[1]: Leaving directory '/build/ariba-Y2UE1J/ariba-2.14.6+ds' dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ariba/usr/lib/python3/dist-packages/vcfcall_ariba.cpython-310-x86_64-linux-gnu.so debian/ariba/usr/lib/python3/dist-packages/vcfcall_ariba.cpython-39-x86_64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package ariba: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package ariba: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'ariba' in '../ariba_2.14.6+ds-3_amd64.deb'. dpkg-deb: building package 'ariba-dbgsym' in '../ariba-dbgsym_2.14.6+ds-3_amd64.deb'. dpkg-genbuildinfo --build=any -O../ariba_2.14.6+ds-3_amd64.buildinfo dpkg-genchanges --build=any -O../ariba_2.14.6+ds-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/ariba-Y2UE1J /tmp/ariba-2.14.6+ds-3tabprufc I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.M7ImLEuRkr... I: success in 749.6044 seconds md5: ariba-dbgsym_2.14.6+ds-3_amd64.deb: OK md5: Value of 'md5' differs for ariba_2.14.6+ds-3_amd64.deb md5: Size differs for ariba_2.14.6+ds-3_amd64.deb sha1: ariba-dbgsym_2.14.6+ds-3_amd64.deb: OK sha1: Value of 'sha1' differs for ariba_2.14.6+ds-3_amd64.deb sha1: Size differs for ariba_2.14.6+ds-3_amd64.deb sha256: ariba-dbgsym_2.14.6+ds-3_amd64.deb: OK sha256: Value of 'sha256' differs for ariba_2.14.6+ds-3_amd64.deb sha256: Size differs for ariba_2.14.6+ds-3_amd64.deb Checksums: FAIL Cannot generate diffoscope for ariba_2.14.6+ds-3_amd64.deb: RetryError[]