--- /tmp/ariba-2.14.6+ds-1+b2maqco34n/debian/ariba_2.14.6+ds-1+b2_amd64.deb +++ ariba_2.14.6+ds-1+b2_amd64.deb ├── file list │ @@ -1,3 +1,3 @@ │ -rw-r--r-- 0 0 0 4 2020-12-07 08:04:01.000000 debian-binary │ -rw-r--r-- 0 0 0 17900 2020-12-07 08:04:01.000000 control.tar.xz │ --rw-r--r-- 0 0 0 1938416 2020-12-07 08:04:01.000000 data.tar.xz │ +-rw-r--r-- 0 0 0 1937332 2020-12-07 08:04:01.000000 data.tar.xz ├── data.tar.xz │ ├── data.tar │ │ ├── file list │ │ │ @@ -4,15 +4,15 @@ │ │ │ -rwxr-xr-x 0 root (0) root (0) 26193 2020-12-07 08:04:01.000000 ./usr/bin/ariba │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2020-12-07 08:04:01.000000 ./usr/lib/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2020-12-07 08:04:01.000000 ./usr/lib/python3/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2020-12-07 08:04:01.000000 ./usr/lib/python3/dist-packages/ │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2020-12-07 08:04:01.000000 ./usr/lib/python3/dist-packages/ariba/ │ │ │ -rw-r--r-- 0 root (0) root (0) 1063 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/__init__.py │ │ │ -rw-r--r-- 0 root (0) root (0) 10940 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/aln_to_metadata.py │ │ │ --rw-r--r-- 0 root (0) root (0) 15088 2020-12-07 08:04:00.000000 ./usr/lib/python3/dist-packages/ariba/assembly.py │ │ │ +-rw-r--r-- 0 root (0) root (0) 15088 2020-12-07 08:04:01.000000 ./usr/lib/python3/dist-packages/ariba/assembly.py │ │ │ -rw-r--r-- 0 root (0) root (0) 16416 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/assembly_compare.py │ │ │ -rw-r--r-- 0 root (0) root (0) 15177 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/assembly_variants.py │ │ │ -rw-r--r-- 0 root (0) root (0) 3586 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/bam_parse.py │ │ │ -rw-r--r-- 0 root (0) root (0) 3328 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/card_record.py │ │ │ -rw-r--r-- 0 root (0) root (0) 6274 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/cdhit.py │ │ │ -rw-r--r-- 0 root (0) root (0) 19456 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/cluster.py │ │ │ -rw-r--r-- 0 root (0) root (0) 28393 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/clusters.py │ │ │ @@ -82,15 +82,15 @@ │ │ │ -rw-r--r-- 0 root (0) root (0) 3573 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/test_run_data/ref_fasta_to_make_reads_from.fa │ │ │ -rw-r--r-- 0 root (0) root (0) 1394 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/test_run_data/ref_seqs.fa │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2020-12-07 08:04:01.000000 ./usr/lib/python3/dist-packages/ariba/tests/ │ │ │ -rw-r--r-- 0 root (0) root (0) 0 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/__init__.py │ │ │ -rw-r--r-- 0 root (0) root (0) 17407 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/aln_to_metadata_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 20285 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/assembly_compare_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 7912 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/assembly_test.py │ │ │ --rw-r--r-- 0 root (0) root (0) 20039 2020-12-07 08:04:00.000000 ./usr/lib/python3/dist-packages/ariba/tests/assembly_variants_test.py │ │ │ +-rw-r--r-- 0 root (0) root (0) 20039 2020-12-07 08:04:01.000000 ./usr/lib/python3/dist-packages/ariba/tests/assembly_variants_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 5091 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/bam_parse_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 8598 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/card_record_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 7820 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/cdhit_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 34821 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/cluster_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 15487 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/clusters_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 1095 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/common_test.py │ │ │ drwxr-xr-x 0 root (0) root (0) 0 2020-12-07 08:04:01.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/ │ │ │ @@ -139,17 +139,17 @@ │ │ │ -rw-r--r-- 0 root (0) root (0) 61 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa │ │ │ -rw-r--r-- 0 root (0) root (0) 255 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv │ │ │ -rw-r--r-- 0 root (0) root (0) 41 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa │ │ │ -rw-r--r-- 0 root (0) root (0) 135 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv │ │ │ -rw-r--r-- 0 root (0) root (0) 87 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps │ │ │ -rw-r--r-- 0 root (0) root (0) 249 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps │ │ │ -rw-r--r-- 0 root (0) root (0) 61 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa │ │ │ --rw-r--r-- 0 root (0) root (0) 145 2020-12-07 08:04:00.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps │ │ │ +-rw-r--r-- 0 root (0) root (0) 145 2020-12-07 08:04:01.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps │ │ │ -rw-r--r-- 0 root (0) root (0) 58 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa │ │ │ --rw-r--r-- 0 root (0) root (0) 136 2020-12-07 08:04:00.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps │ │ │ +-rw-r--r-- 0 root (0) root (0) 136 2020-12-07 08:04:01.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps │ │ │ -rw-r--r-- 0 root (0) root (0) 472 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/bam_parse_test_parse.bam │ │ │ -rw-r--r-- 0 root (0) root (0) 399 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/bam_parse_test_parse.reads_1.fq │ │ │ -rw-r--r-- 0 root (0) root (0) 399 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/bam_parse_test_parse.reads_2.fq │ │ │ -rw-r--r-- 0 root (0) root (0) 1030 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/bam_parse_test_parse.ref.fa │ │ │ -rw-r--r-- 0 root (0) root (0) 465 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam │ │ │ -rw-r--r-- 0 root (0) root (0) 734 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq │ │ │ -rw-r--r-- 0 root (0) root (0) 209 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa │ │ │ @@ -761,15 +761,15 @@ │ │ │ -rw-r--r-- 0 root (0) root (0) 5941 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/link_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 5811 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/mapping_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 1379 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/megares_data_finder_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 4211 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/megares_zip_parser_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 14919 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/mic_plotter_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 2587 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/mlst_profile_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 4757 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/mlst_reporter_test.py │ │ │ --rw-r--r-- 0 root (0) root (0) 529 2020-12-07 08:04:00.000000 ./usr/lib/python3/dist-packages/ariba/tests/ncbi_getter_test.py │ │ │ +-rw-r--r-- 0 root (0) root (0) 529 2020-12-07 08:04:01.000000 ./usr/lib/python3/dist-packages/ariba/tests/ncbi_getter_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 2112 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/pubmlst_getter_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 2355 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 2688 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/read_filter_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 5944 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/read_store_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 836 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/ref_genes_getter_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 7897 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/ref_preparer_test.py │ │ │ -rw-r--r-- 0 root (0) root (0) 6631 2020-09-07 12:37:08.000000 ./usr/lib/python3/dist-packages/ariba/tests/ref_seq_chooser_test.py