Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/w/wtdbg2/wtdbg2_2.5-7+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/wtdbg2-2.5-7+b1kxtz3hj3/wtdbg2_2.5-7+b1_amd64.buildinfo Get source package info: wtdbg2=2.5-7 Source URL: http://snapshot.notset.fr/mr/package/wtdbg2/2.5-7/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-6 bsdutils=1:2.36.1-6 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.10.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210118-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-3 gettext-base=0.21-3 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblkid1=2.36.1-6 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.45.6-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.256 libdebhelper-perl=13.3.1 libdpkg-perl=1.20.7.1 libelf1=0.182-3 libfile-stripnondeterminism-perl=1.10.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-6 libisl23=0.23-1 libitm1=10.2.1-6 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-6 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libquadmath0=10.2.1-6 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsigsegv2=2.12-3 libsimde-dev=0.7.2-3 libsmartcols1=2.36.1-6 libssl1.1=1.1.1i-2 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.2-5 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.2-5 libunistring2=0.9.10-4 libuuid1=2.36.1-6 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.9-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 po-debconf=1.0.21+nmu1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 util-linux=2.36.1-6 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210127T084213Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d wtdbg2=2.5-7 && mkdir -p /build/wtdbg2-UZj7J1 && dpkg-source --no-check -x /*.dsc /build/wtdbg2-UZj7J1/wtdbg2-2.5 && cd /build/wtdbg2-UZj7J1/wtdbg2-2.5 && { printf '%s' 'wtdbg2 (2.5-7+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild using libsimde-dev 0.7.2-3 -- all / amd64 / i386 Build Daemon (x86-conova-01) Wed, 27 Jan 2021 10:49:40 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/wtdbg2-UZj7J1" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/wtdbg2-UZj7J1/wtdbg2-2.5 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1611744580" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/wtdbg2-UZj7J1 /tmp/wtdbg2-2.5-7+b1kxtz3hj3 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210127T084213Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.2Jj6JFb4DV as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.2Jj6JFb4DV Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210127T084213Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210127T084213Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (887 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4661 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210127T084213Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.2Jj6JFb4DV Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210127T084213Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 23s (999 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.2Jj6JFb4DV I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d wtdbg2=2.5-7 && mkdir -p /build/wtdbg2-UZj7J1 && dpkg-source --no-check -x /*.dsc /build/wtdbg2-UZj7J1/wtdbg2-2.5 && cd /build/wtdbg2-UZj7J1/wtdbg2-2.5 && { printf '%s' 'wtdbg2 (2.5-7+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild using libsimde-dev 0.7.2-3 -- all / amd64 / i386 Build Daemon (x86-conova-01) Wed, 27 Jan 2021 10:49:40 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/wtdbg2-UZj7J1"' exec /tmp/mmdebstrap.2Jj6JFb4DV Reading package lists... NOTICE: 'wtdbg2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/wtdbg2.git Please use: git clone https://salsa.debian.org/med-team/wtdbg2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 121 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main wtdbg2 2.5-7 (dsc) [2079 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main wtdbg2 2.5-7 (tar) [237 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main wtdbg2 2.5-7 (diff) [121 MB] Fetched 121 MB in 1min 36s (1269 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'wtdbg2_2.5-7.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting wtdbg2 in /build/wtdbg2-UZj7J1/wtdbg2-2.5 dpkg-source: info: unpacking wtdbg2_2.5.orig.tar.gz dpkg-source: info: unpacking wtdbg2_2.5-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_install.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying simde dpkg-source: info: applying scripts-tweak I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/wtdbg2-UZj7J1/wtdbg2-2.5 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1611744580" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.2Jj6JFb4DV dpkg-buildpackage: info: source package wtdbg2 dpkg-buildpackage: info: source version 2.5-7+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[1]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' sed -i 's/\/usr\/bin\/env perl/\/usr\/bin\/perl/' scripts/* sed -i 's/memeory/memory/' *.c *.h *.md sed -i 's/automaticly/automatically/' *.c sed -i 's/ouput/output/' *.c sed -i 's/vaule/value/' *.c sed -i 's/annonymous/anonymous/' *.h mkdir -p /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr mkdir -p /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ export CFLAGS="-g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -m${SIMD}" ; \ make clean ; \ dh_auto_build -- SFX=-${SIMD} ; \ done make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make -j4 "INSTALL=install --strip-program=true" SFX=-avx2 make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-avx2 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-avx2 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-avx2 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-avx2 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ wtpoa-cns.c: In function ‘main’: wtpoa-cns.c:110:24: warning: this statement may fall through [-Wimplicit-fallthrough=] 110 | case 'p': print_lay = 1; | ~~~~~~~~~~^~~ wtpoa-cns.c:111:4: note: here 111 | case 'd': push_cplist(dbfs, optarg); break; | ^~~~ In file included from bit2vec.h:27, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa.h:25, from wtpoa-cns.c:20: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from list.h:28, from kbm.h:23, from kbm.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj_file’: mem_share.h:1301:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fread(size, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1302:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(mem_type, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1303:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1303 | fread(cnt, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1304:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1304 | fread(aux_data, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj’: mem_share.h:919:5: warning: this statement may fall through [-Wimplicit-fallthrough=] 919 | for(m=0;marray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns.constprop’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_pog’ at poacns.h:130:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_pog’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-avx2 pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make -j4 "INSTALL=install --strip-program=true" SFX=-avx make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-avx kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-avx wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-avx wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-avx wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ wtpoa-cns.c: In function ‘main’: wtpoa-cns.c:110:24: warning: this statement may fall through [-Wimplicit-fallthrough=] 110 | case 'p': print_lay = 1; | ~~~~~~~~~~^~~ wtpoa-cns.c:111:4: note: here 111 | case 'd': push_cplist(dbfs, optarg); break; | ^~~~ In file included from bit2vec.h:27, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa.h:25, from wtpoa-cns.c:20: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from list.h:28, from kbm.h:23, from kbm.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj_file’: mem_share.h:1301:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fread(size, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1302:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(mem_type, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1303:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1303 | fread(cnt, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1304:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1304 | fread(aux_data, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj’: mem_share.h:919:5: warning: this statement may fall through [-Wimplicit-fallthrough=] 919 | for(m=0;marray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns.constprop’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_pog’ at poacns.h:130:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_pog’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mavx -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-avx pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make -j4 "INSTALL=install --strip-program=true" SFX=-sse4.1 make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-sse4.1 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-sse4.1 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-sse4.1 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-sse4.1 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now wtpoa-cns.c: In function ‘main’: wtpoa-cns.c:110:24: warning: this statement may fall through [-Wimplicit-fallthrough=] 110 | case 'p': print_lay = 1; | ~~~~~~~~~~^~~ wtpoa-cns.c:111:4: note: here 111 | case 'd': push_cplist(dbfs, optarg); break; | ^~~~ In file included from bit2vec.h:27, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa.h:25, from wtpoa-cns.c:20: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from list.h:28, from kbm.h:23, from kbm.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj_file’: mem_share.h:1301:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fread(size, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1302:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(mem_type, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1303:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1303 | fread(cnt, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1304:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1304 | fread(aux_data, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj’: mem_share.h:919:5: warning: this statement may fall through [-Wimplicit-fallthrough=] 919 | for(m=0;marray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns.constprop’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_pog’ at poacns.h:130:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_pog’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse4.1 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-sse4.1 pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make -j4 "INSTALL=install --strip-program=true" SFX=-ssse3 make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-ssse3 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-ssse3 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-ssse3 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-ssse3 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now wtpoa-cns.c: In function ‘main’: wtpoa-cns.c:110:24: warning: this statement may fall through [-Wimplicit-fallthrough=] 110 | case 'p': print_lay = 1; | ~~~~~~~~~~^~~ wtpoa-cns.c:111:4: note: here 111 | case 'd': push_cplist(dbfs, optarg); break; | ^~~~ In file included from bit2vec.h:27, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa.h:25, from wtpoa-cns.c:20: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from list.h:28, from kbm.h:23, from kbm.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj_file’: mem_share.h:1301:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fread(size, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1302:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(mem_type, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1303:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1303 | fread(cnt, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1304:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1304 | fread(aux_data, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj’: mem_share.h:919:5: warning: this statement may fall through [-Wimplicit-fallthrough=] 919 | for(m=0;marray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns.constprop’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_pog’ at poacns.h:130:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_pog’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -mssse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-ssse3 pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make -j4 "INSTALL=install --strip-program=true" SFX=-sse3 make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-sse3 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-sse3 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-sse3 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-sse3 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ wtpoa-cns.c: In function ‘main’: wtpoa-cns.c:110:24: warning: this statement may fall through [-Wimplicit-fallthrough=] 110 | case 'p': print_lay = 1; | ~~~~~~~~~~^~~ wtpoa-cns.c:111:4: note: here 111 | case 'd': push_cplist(dbfs, optarg); break; | ^~~~ In file included from bit2vec.h:27, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa.h:25, from wtpoa-cns.c:20: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from list.h:28, from kbm.h:23, from kbm.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj_file’: mem_share.h:1301:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fread(size, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1302:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(mem_type, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1303:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1303 | fread(cnt, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1304:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1304 | fread(aux_data, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj’: mem_share.h:919:5: warning: this statement may fall through [-Wimplicit-fallthrough=] 919 | for(m=0;marray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns.constprop’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_pog’ at poacns.h:130:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_pog’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse3 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-sse3 pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make -j4 "INSTALL=install --strip-program=true" SFX=-sse2 make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2-sse2 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2-sse2 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns-sse2 wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns-sse2 wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now wtpoa-cns.c: In function ‘main’: wtpoa-cns.c:110:24: warning: this statement may fall through [-Wimplicit-fallthrough=] 110 | case 'p': print_lay = 1; | ~~~~~~~~~~^~~ wtpoa-cns.c:111:4: note: here 111 | case 'd': push_cplist(dbfs, optarg); break; | ^~~~ In file included from bit2vec.h:27, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa.h:25, from wtpoa-cns.c:20: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from wtdbg.c:20: wtdbg.h: In function ‘estimate_edge_length’: wtdbg.h:1926:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1926 | for(i=b,tot=0;iarray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns.constprop’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_pog’ at poacns.h:130:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_pog’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ gcc -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -msse2 -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf-sse2 pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make[1]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' dh_install -p wtdbg2 debian/bin/simd-dispatch /usr/lib/wtdbg2/ for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ export CFLAGS="-g -O2 -ffile-prefix-map=/build/wtdbg2-UZj7J1/wtdbg2-2.5=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -m${SIMD}" ; \ dh_auto_build -- SFX=-${SIMD} BIN=/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install ; \ done make -j4 "INSTALL=install --strip-program=true" SFX=-avx2 BIN=/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' mkdir -p /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-avx2 wtdbg2-avx2 wtdbg-cns-avx2 wtpoa-cns-avx2 pgzf-avx2 /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-avx2' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-avx2' 'wtdbg2-avx2' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-avx2' 'wtdbg-cns-avx2' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-avx2' 'wtpoa-cns-avx2' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-avx2' 'pgzf-avx2' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-avx2' make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make -j4 "INSTALL=install --strip-program=true" SFX=-avx BIN=/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' mkdir -p /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-avx wtdbg2-avx wtdbg-cns-avx wtpoa-cns-avx pgzf-avx /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-avx' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-avx' 'wtdbg2-avx' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-avx' 'wtdbg-cns-avx' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-avx' 'wtpoa-cns-avx' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-avx' 'pgzf-avx' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-avx' make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make -j4 "INSTALL=install --strip-program=true" SFX=-sse4.1 BIN=/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' mkdir -p /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-sse4.1 wtdbg2-sse4.1 wtdbg-cns-sse4.1 wtpoa-cns-sse4.1 pgzf-sse4.1 /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-sse4.1' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-sse4.1' 'wtdbg2-sse4.1' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-sse4.1' 'wtdbg-cns-sse4.1' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-sse4.1' 'wtpoa-cns-sse4.1' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-sse4.1' 'pgzf-sse4.1' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-sse4.1' make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make -j4 "INSTALL=install --strip-program=true" SFX=-ssse3 BIN=/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' mkdir -p /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-ssse3 wtdbg2-ssse3 wtdbg-cns-ssse3 wtpoa-cns-ssse3 pgzf-ssse3 /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-ssse3' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-ssse3' 'wtdbg2-ssse3' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-ssse3' 'wtdbg-cns-ssse3' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-ssse3' 'wtpoa-cns-ssse3' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-ssse3' 'pgzf-ssse3' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-ssse3' make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make -j4 "INSTALL=install --strip-program=true" SFX=-sse3 BIN=/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' mkdir -p /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-sse3 wtdbg2-sse3 wtdbg-cns-sse3 wtpoa-cns-sse3 pgzf-sse3 /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-sse3' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-sse3' 'wtdbg2-sse3' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-sse3' 'wtdbg-cns-sse3' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-sse3' 'wtpoa-cns-sse3' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-sse3' 'pgzf-sse3' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-sse3' make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' make -j4 "INSTALL=install --strip-program=true" SFX=-sse2 BIN=/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 install make[2]: Entering directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' mkdir -p /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 && cp -fvu kbm2-sse2 wtdbg2-sse2 wtdbg-cns-sse2 wtpoa-cns-sse2 pgzf-sse2 /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2 'kbm2-sse2' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/kbm2-sse2' 'wtdbg2-sse2' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg2-sse2' 'wtdbg-cns-sse2' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtdbg-cns-sse2' 'wtpoa-cns-sse2' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/wtpoa-cns-sse2' 'pgzf-sse2' -> '/build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/lib/wtdbg2/pgzf-sse2' make[2]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' mkdir -p /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/bin cd /build/wtdbg2-UZj7J1/wtdbg2-2.5/debian/wtdbg2/usr/bin \ && for prog in kbm2 pgzf wtdbg-cns wtdbg2 wtpoa-cns ; do \ ln -s ../lib/wtdbg2/simd-dispatch ${prog} ; done make[1]: Leaving directory '/build/wtdbg2-UZj7J1/wtdbg2-2.5' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'wtdbg2' in '../wtdbg2_2.5-7+b1_amd64.deb'. dpkg-deb: building package 'wtdbg2-dbgsym' in '../wtdbg2-dbgsym_2.5-7+b1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../wtdbg2_2.5-7+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/wtdbg2-UZj7J1 /tmp/wtdbg2-2.5-7+b1kxtz3hj3 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.2Jj6JFb4DV... I: success in 1207.9774 seconds md5: wtdbg2-dbgsym_2.5-7+b1_amd64.deb: OK md5: wtdbg2_2.5-7+b1_amd64.deb: OK sha1: wtdbg2-dbgsym_2.5-7+b1_amd64.deb: OK sha1: wtdbg2_2.5-7+b1_amd64.deb: OK sha256: wtdbg2-dbgsym_2.5-7+b1_amd64.deb: OK sha256: wtdbg2_2.5-7+b1_amd64.deb: OK Checksums: OK