Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/w/weka/weka_3.6.14-2_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/weka-3.6.14-2dhv76pzl/weka_3.6.14-2_all.buildinfo Get source package info: weka=3.6.14-2 Source URL: http://snapshot.notset.fr/mr/package/weka/3.6.14-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=ant=1.10.9-2 autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.49 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20210119 ca-certificates-java=20190909 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 cup=0.11b-20160615-2 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.3 debianutils=4.11.2 default-jdk=2:1.11-72 default-jdk-headless=2:1.11-72 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 dh-autoreconf=20 dh-strip-nondeterminism=1.11.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210201-1 file=1:5.39-3 findutils=4.8.0-1 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-lmodern=2.004.5-6.1 fonts-urw-base35=20200910-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 ghostscript=9.53.3~dfsg-7 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 java-common=0.72 jflex=1.7.0-2 libacl1=2.2.53-10 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libasound2=1.2.4-1.1 libasound2-data=1.2.4-1.1 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbinutils=2.35.1-7 libblkid1=2.36.1-7 libbrotli1=1.0.9-2+b2 libbsd0=0.11.2-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.45.7-1 libcommons-logging-java=1.2-2 libcommons-parent-java=43-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libcups2=2.3.3op2-2 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-1 libdebconfclient0=0.256 libdebhelper-perl=13.3.3 libdeflate0=1.7-1 libdpkg-perl=1.20.7.1 libdrm-amdgpu1=2.4.104-1 libdrm-common=2.4.104-1 libdrm-intel1=2.4.104-1 libdrm-nouveau2=2.4.104-1 libdrm-radeon1=2.4.104-1 libdrm2=2.4.104-1 libedit2=3.1-20191231-2+b1 libelf1=0.183-1 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.11.0-1 libfontbox-java=1:1.8.16-2 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.4+dfsg-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgif7=5.1.9-2 libgl1=1.3.2-1 libgl1-mesa-dri=20.3.4-1 libglapi-mesa=20.3.4-1 libglib2.0-0=2.66.6-1 libglvnd0=1.3.2-1 libglx-mesa0=20.3.4-1 libglx0=1.3.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-5 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgs9=9.53.3~dfsg-7 libgs9-common=9.53.3~dfsg-7 libgssapi-krb5-2=1.18.3-4 libharfbuzz0b=2.7.4-1 libhogweed6=3.7-2 libice6=2:1.0.10-1 libicu67=67.1-6 libidn11=1.33-3 libidn2-0=2.3.0-5 libijs-0.35=0.35-15 libisl23=0.23-1 libitm1=10.2.1-6 libjbig0=2.1-3.1+b2 libjbig2dec0=0.19-2 libjpeg62-turbo=1:2.0.5-2 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkpathsea6=2020.20200327.54578-6 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblcms2-2=2.12~rc1-2 libllvm11=1:11.0.1-2 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-1 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpdec3=2.5.1-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-2 libnettle8=3.7-2 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.29-1 libnss3=2:3.61-1 libopenjp2-7=2.4.0-2 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-4 libpam-modules-bin=1.4.0-4 libpam-runtime=1.4.0-4 libpam0g=1.4.0-4 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpciaccess0=0.16-1 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libpcsclite1=1.9.0-1 libpdfbox-java=1:1.8.16-2 libperl5.32=5.32.1-2 libpipeline1=1.5.3-1 libpixman-1-0=0.40.0-1 libpng16-16=1.6.37-3 libptexenc1=2020.20200327.54578-6 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-4 libpython3.9-stdlib=3.9.1-4 libquadmath0=10.2.1-6 libreadline8=8.1-1 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsensors-config=1:3.6.0-7 libsensors5=1:3.6.0-7 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.36.1-7 libsqlite3-0=3.34.1-1 libssl1.1=1.1.1i-3 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsynctex2=2020.20200327.54578-6 libsystemd0=247.3-1 libtasn1-6=4.16.0-2 libteckit0=2.5.10+ds1-3 libtexlua53=2020.20200327.54578-6 libtexluajit2=2020.20200327.54578-6 libtiff5=4.2.0-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-1 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libvulkan1=1.2.162.0-1 libwebp6=0.6.1-2+b1 libx11-6=2:1.7.0-2 libx11-data=2:1.7.0-2 libx11-xcb1=2:1.7.0-2 libxau6=1:1.0.9-1 libxaw7=2:1.0.13-1.1 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-present0=1.14-3 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb-sync1=1.14-3 libxcb-xfixes0=1.14-3 libxcb1=1.14-3 libxdamage1=1:1.1.5-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1.1 libxfixes3=1:5.0.3-2 libxi6=2:1.7.10-1 libxml2=2.9.10+dfsg-6.3+b1 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxt6=1:1.2.0-1 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.10-1 libzstd1=1.4.8+dfsg-1 libzzip-0-13=0.13.62-3.2 linux-libc-dev=5.10.13-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 openjdk-11-jdk=11.0.10+9-1 openjdk-11-jdk-headless=11.0.10+9-1 openjdk-11-jre=11.0.10+9-1 openjdk-11-jre-headless=11.0.10+9-1 openssl=1.1.1i-3 patch=2.7.6-7 perl=5.32.1-2 perl-base=5.32.1-2 perl-modules-5.32=5.32.1-2 po-debconf=1.0.21+nmu1 poppler-data=0.4.10-1 preview-latex-style=12.2-1 python3=3.9.1-1 python3-minimal=3.9.1-1 python3.9=3.9.1-4 python3.9-minimal=3.9.1-4 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 t1utils=1.41-4 tar=1.32+dfsg-1 tex-common=6.15 texlive-base=2020.20210202-2 texlive-binaries=2020.20200327.54578-6 texlive-latex-base=2020.20210202-2 texlive-latex-extra=2020.20210202-1 texlive-latex-recommended=2020.20210202-2 texlive-pictures=2020.20210202-2 tzdata=2021a-1 ucf=3.0043 util-linux=2.36.1-7 x11-common=1:7.7+21 xdg-utils=1.1.3-4 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210208T151116Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d weka=3.6.14-2 && mkdir -p /build/weka-NO4D3r && dpkg-source --no-check -x /*.dsc /build/weka-NO4D3r/weka-3.6.14 && chown -R builduser:builduser /build/weka-NO4D3r" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/weka-NO4D3r/weka-3.6.14 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612794021" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/weka-NO4D3r /tmp/weka-3.6.14-2dhv76pzl bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210208T151116Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.dhwxkcUbW6 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.dhwxkcUbW6 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210208T151116Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210208T151116Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (853 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4663 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210208T151116Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.dhwxkcUbW6 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210208T151116Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1139 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.dhwxkcUbW6 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d weka=3.6.14-2 && mkdir -p /build/weka-NO4D3r && dpkg-source --no-check -x /*.dsc /build/weka-NO4D3r/weka-3.6.14 && chown -R builduser:builduser /build/weka-NO4D3r"' exec /tmp/mmdebstrap.dhwxkcUbW6 Reading package lists... NOTICE: 'weka' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/java-team/weka.git Please use: git clone https://salsa.debian.org/java-team/weka.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 14.5 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main weka 3.6.14-2 (dsc) [2101 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main weka 3.6.14-2 (tar) [14.5 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main weka 3.6.14-2 (diff) [10.5 kB] Fetched 14.5 MB in 12s (1254 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'weka_3.6.14-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting weka in /build/weka-NO4D3r/weka-3.6.14 dpkg-source: info: unpacking weka_3.6.14.orig.tar.gz dpkg-source: info: unpacking weka_3.6.14-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying jar.patch dpkg-source: info: applying disable-rmic-static-stub.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/weka-NO4D3r/weka-3.6.14 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612794021" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.dhwxkcUbW6 dpkg-buildpackage: info: source package weka dpkg-buildpackage: info: source version 3.6.14-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Bourg dpkg-source --before-build . fakeroot debian/rules clean dh clean dh_auto_clean ant clean Buildfile: /build/weka-NO4D3r/weka-3.6.14/build.xml init_all: [tstamp] Honouring environment variable SOURCE_DATE_EPOCH which has been set to 1612794021 clean: [delete] Deleting directory /build/weka-NO4D3r/weka-3.6.14/doc BUILD SUCCESSFUL Total time: 2 seconds dh_clean debian/rules build-indep dh build-indep dh_update_autotools_config -i dh_autoreconf -i dh_auto_configure -i debian/rules override_dh_auto_build make[1]: Entering directory '/build/weka-NO4D3r/weka-3.6.14' dh_auto_build -- exejar docs ant -Duser.name debian exejar docs Buildfile: /build/weka-NO4D3r/weka-3.6.14/build.xml init_all: [tstamp] Honouring environment variable SOURCE_DATE_EPOCH which has been set to 1612794021 init_compile: [mkdir] Created dir: /build/weka-NO4D3r/weka-3.6.14/build/classes compile: [javac] Using javac -source 1.5 is no longer supported, switching to 6 [javac] Using javac -target 1.5 is no longer supported, switching to 6 [javac] Compiling 1053 source files to /build/weka-NO4D3r/weka-3.6.14/build/classes [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [copy] Copying 505 files to /build/weka-NO4D3r/weka-3.6.14/build/classes init_dist: [mkdir] Created dir: /build/weka-NO4D3r/weka-3.6.14/dist exejar: [jar] Building jar: /build/weka-NO4D3r/weka-3.6.14/dist/weka.jar init_all: [tstamp] Honouring environment variable SOURCE_DATE_EPOCH which has been set to 1612794021 docs: [mkdir] Created dir: /build/weka-NO4D3r/weka-3.6.14/doc [javadoc] Generating Javadoc [javadoc] Debian build on Java 9+ detected: Adding the --ignore-source-errors option [javadoc] Javadoc execution [javadoc] Loading source files for package weka.associations... [javadoc] Loading source files for package weka.associations.gsp... [javadoc] Loading source files for package weka.associations.tertius... [javadoc] Loading source files for package weka.attributeSelection... [javadoc] Loading source files for package weka.classifiers... [javadoc] Loading source files for package weka.classifiers.bayes... [javadoc] Loading source files for package weka.classifiers.bayes.blr... [javadoc] Loading source files for package weka.classifiers.bayes.net... [javadoc] Loading source files for package weka.classifiers.bayes.net.estimate... [javadoc] Loading source files for package weka.classifiers.bayes.net.search... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.ci... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.fixed... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.global... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.local... [javadoc] Loading source files for package weka.classifiers.evaluation... [javadoc] Loading source files for package weka.classifiers.functions... [javadoc] Loading source files for package weka.classifiers.functions.neural... [javadoc] Loading source files for package weka.classifiers.functions.pace... [javadoc] Loading source files for package weka.classifiers.functions.supportVector... [javadoc] Loading source files for package weka.classifiers.lazy... [javadoc] Loading source files for package weka.classifiers.lazy.kstar... [javadoc] Loading source files for package weka.classifiers.meta... [javadoc] Loading source files for package weka.classifiers.meta.nestedDichotomies... [javadoc] Loading source files for package weka.classifiers.mi... [javadoc] Loading source files for package weka.classifiers.mi.supportVector... [javadoc] Loading source files for package weka.classifiers.misc... [javadoc] Loading source files for package weka.classifiers.pmml.consumer... [javadoc] Loading source files for package weka.classifiers.rules... [javadoc] Loading source files for package weka.classifiers.rules.part... [javadoc] Loading source files for package weka.classifiers.trees... [javadoc] Loading source files for package weka.classifiers.trees.adtree... [javadoc] Loading source files for package weka.classifiers.trees.ft... [javadoc] Loading source files for package weka.classifiers.trees.j48... [javadoc] Loading source files for package weka.classifiers.trees.lmt... [javadoc] Loading source files for package weka.classifiers.trees.m5... [javadoc] Loading source files for package weka.classifiers.xml... [javadoc] Loading source files for package weka.clusterers... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.DataObjects... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.Databases... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.OPTICS_GUI... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.Utils... [javadoc] Loading source files for package weka.core... [javadoc] Loading source files for package weka.core.converters... [javadoc] Loading source files for package weka.core.logging... [javadoc] Loading source files for package weka.core.mathematicalexpression... [javadoc] Loading source files for package weka.core.matrix... [javadoc] Loading source files for package weka.core.neighboursearch... [javadoc] Loading source files for package weka.core.neighboursearch.balltrees... [javadoc] Loading source files for package weka.core.neighboursearch.covertrees... [javadoc] Loading source files for package weka.core.neighboursearch.kdtrees... [javadoc] Loading source files for package weka.core.pmml... [javadoc] Loading source files for package weka.core.stemmers... [javadoc] Loading source files for package weka.core.tokenizers... [javadoc] Loading source files for package weka.core.xml... [javadoc] Loading source files for package weka.datagenerators... [javadoc] Loading source files for package weka.datagenerators.classifiers.classification... [javadoc] Loading source files for package weka.datagenerators.classifiers.regression... [javadoc] Loading source files for package weka.datagenerators.clusterers... [javadoc] Loading source files for package weka.estimators... [javadoc] Loading source files for package weka.experiment... [javadoc] Loading source files for package weka.experiment.xml... [javadoc] Loading source files for package weka.filters... [javadoc] Loading source files for package weka.filters.supervised.attribute... [javadoc] Loading source files for package weka.filters.supervised.instance... [javadoc] Loading source files for package weka.filters.unsupervised.attribute... [javadoc] Loading source files for package weka.filters.unsupervised.instance... [javadoc] Loading source files for package weka.filters.unsupervised.instance.subsetbyexpression... [javadoc] Loading source files for package weka.gui... [javadoc] Loading source files for package weka.gui.arffviewer... [javadoc] Loading source files for package weka.gui.beans... [javadoc] Loading source files for package weka.gui.beans.xml... [javadoc] Loading source files for package weka.gui.boundaryvisualizer... [javadoc] Loading source files for package weka.gui.experiment... [javadoc] Loading source files for package weka.gui.explorer... [javadoc] Loading source files for package weka.gui.graphvisualizer... [javadoc] Loading source files for package weka.gui.hierarchyvisualizer... [javadoc] Loading source files for package weka.gui.sql... [javadoc] Loading source files for package weka.gui.sql.event... [javadoc] Loading source files for package weka.gui.streams... [javadoc] Loading source files for package weka.gui.treevisualizer... [javadoc] Loading source files for package weka.gui.visualize... [javadoc] Loading source files for package weka.gui.visualize.plugins... [javadoc] Constructing Javadoc information... [javadoc] Standard Doclet version 11.0.10 [javadoc] Building tree for all the packages and classes... [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/associations/AprioriItemSet.java:94: warning - invalid usage of tag & [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/associations/AprioriItemSet.java:116: warning - invalid usage of tag & [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/LFSMethods.java:144: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/LFSMethods.java:144: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/LFSMethods.java:329: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/LFSMethods.java:329: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/LFSMethods.java:658: warning - @param argument "gr" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/LinearForwardSelection.java:257: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/LinearForwardSelection.java:257: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/LinearForwardSelection.java:274: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/LinearForwardSelection.java:274: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/LinearForwardSelection.java:594: warning - @param argument "d" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/LinearForwardSelection.java:737: warning - @param argument "ASEvaluator" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/RandomSearch.java:385: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/RandomSearch.java:385: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/RankedOutputSearch.java:69: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/Ranker.java:153: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/ReliefFAttributeEval.java:406: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/SubsetSizeForwardSelection.java:316: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/SubsetSizeForwardSelection.java:316: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/SubsetSizeForwardSelection.java:641: warning - @param argument "d" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/attributeSelection/SubsetSizeForwardSelection.java:746: warning - @param argument "ASEvaluator" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/Evaluation.java:2076: warning - invalid usage of tag & [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/Evaluation.java:2095: warning - invalid usage of tag & [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/Evaluation.java:2114: warning - invalid usage of tag & [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/Evaluation.java:462: warning - @param argument "forPredictionsString" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/Evaluation.java:1455: warning - @param argument "forPredictionsString" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/Evaluation.java:2076: warning - invalid usage of tag & [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/Evaluation.java:2078: warning - invalid usage of tag &B [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/Evaluation.java:2095: warning - invalid usage of tag & [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/Evaluation.java:2097: warning - invalid usage of tag &B [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/Evaluation.java:2114: warning - invalid usage of tag & [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/Evaluation.java:2116: warning - invalid usage of tag &B [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/Evaluation.java:3148: warning - @return tag cannot be used in method with void return type. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/BayesianLogisticRegression.java:432: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/BayesianLogisticRegression.java:432: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/BayesianLogisticRegression.java:436: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/BayesianLogisticRegression.java:498: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/BayesianLogisticRegression.java:498: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/BayesNet.java:989: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/BayesNet.java:989: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/BayesNet.java:990: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/BayesNet.java:990: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/DMNBtext.java:157: warning - @param argument "instances" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/DMNBtext.java:462: warning - @param argument "instance" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/blr/LaplacePriorImpl.java:137: warning - @param argument "hyperparameter" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/net/EditableBayesNet.java:1137: warning - @param argument "iNode" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/net/EditableBayesNet.java:1447: warning - @param argument "iNode" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/bayes/net/MarginCalculator.java:42: warning - @return tag cannot be used in method with void return type. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/functions/SPegasos.java:624: warning - @param argument "instance" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/functions/pace/PaceMatrix.java:628: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/functions/pace/PaceMatrix.java:863: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/functions/pace/PaceMatrix.java:941: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/functions/pace/PaceMatrix.java:962: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/functions/supportVector/CachedKernel.java:35: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/functions/supportVector/PrecomputedKernelMatrixKernel.java:256: warning - @param argument "value" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/meta/RegressionByDiscretization.java:526: warning - @param argument "numBins" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/rules/JRip.java:296: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/rules/RuleStats.java:232: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/rules/RuleStats.java:232: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/rules/RuleStats.java:494: warning - invalid usage of tag & [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/rules/RuleStats.java:494: warning - invalid usage of tag & [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/rules/RuleStats.java:494: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/rules/RuleStats.java:510: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/rules/RuleStats.java:559: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/rules/RuleStats.java:644: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/rules/RuleStats.java:696: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/rules/RuleStats.java:711: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/ADTree.java:1119: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/FT.java:537: warning - @param argument "c" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/LADTree.java:1319: warning - @param argument "measureName" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/adtree/TwoWayNumericSplit.java:34: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/adtree/TwoWayNumericSplit.java:34: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/ft/FTtree.java:377: warning - @param argument "" is not a type parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/j48/C45PruneableClassifierTreeG.java:160: warning - @param argument "datathe" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/j48/C45PruneableClassifierTreeG.java:1156: warning - @param argument "double" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/j48/GraftSplit.java:77: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/j48/GraftSplit.java:77: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/j48/GraftSplit.java:96: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/j48/GraftSplit.java:96: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/j48/GraftSplit.java:478: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/j48/GraftSplit.java:478: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/lmt/ResidualSplit.java:238: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/lmt/ResidualSplit.java:238: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/classifiers/trees/m5/M5Base.java:627: warning - invalid usage of tag & [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/clusterers/CLOPE.java:414: warning - @param argument "instances" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/clusterers/forOPTICSAndDBScan/Databases/Database.java:125: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/clusterers/forOPTICSAndDBScan/Databases/Database.java:126: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/clusterers/forOPTICSAndDBScan/Databases/Database.java:138: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/clusterers/forOPTICSAndDBScan/Databases/Database.java:139: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/clusterers/forOPTICSAndDBScan/Databases/Database.java:140: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/clusterers/forOPTICSAndDBScan/Databases/SequentialDatabase.java:175: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/clusterers/forOPTICSAndDBScan/Databases/SequentialDatabase.java:176: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/clusterers/forOPTICSAndDBScan/Databases/SequentialDatabase.java:220: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/clusterers/forOPTICSAndDBScan/Databases/SequentialDatabase.java:221: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/clusterers/forOPTICSAndDBScan/Databases/SequentialDatabase.java:222: warning - invalid usage of tag > [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/core/ClassDiscovery.java:701: warning - invalid usage of tag & [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/core/Instances.java:1187: warning - invalid usage of tag < [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/core/Jython.java:84: warning - @param argument "o" is not a parameter name. [javadoc] /build/weka-NO4D3r/weka-3.6.14/src/main/java/weka/core/Jython.java:138: warning - @param argument "filename" is not a parameter name. [javadoc] Building index for all the packages and classes... [javadoc] Building index for all classes... [javadoc] Building index for all classes... [javadoc] Generating /build/weka-NO4D3r/weka-3.6.14/doc/help-doc.html... [javadoc] 100 warnings BUILD SUCCESSFUL Total time: 7 minutes 3 seconds ( cd wekadocs/manual && \ latex manual.tex ; latex manual.tex ; latex manual.tex ; \ dvipdf manual.dvi ) This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/epsfig.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/dvips.def)))) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hdvips.def (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pdfmark.def (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))) (./hyphenation.tex) (./extensions.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-dvips.def) No file manual.aux. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) Package hyperref Warning: Rerun to get /PageLabels entry. [1] Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 \OT1/cmr/m/n/10 This man-ual is li-censed un-der the GNU Gen-eral Pub-lic Li-ce nse Underfull \hbox (badness 4279) in paragraph at lines 42--49 \OT1/cmr/m/n/10 ver-sion 2. More in-for-ma-tion about this li-cense can be foun d at [2] [3] [4] [5] [6] Chapter 1. (./commandline.tex [7] Overfull \hbox (1.64569pt too wide) in paragraph at lines 46--46 []\OT1/cmtt/m/n/7 % Any relation to real weather is purely coincidental.[] Overfull \hbox (20.43309pt too wide) in paragraph at lines 39--54 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 56--70 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 72--87 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 89--104 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 106--120 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 122--141 [] Underfull \vbox (badness 1616) has occurred while \output is active [8] Overfull \hbox (16.8051pt too wide) in paragraph at lines 155--156 \OT1/cmtt/m/n/10 converters.CSVLoader\OT1/cmr/m/n/10 , which can be used to im- port C45 datasets and comma/tab- [9] Overfull \hbox (63.24817pt too wide) in paragraph at lines 166--167 \OT1/cmr/m/n/10 Any learn-ing al-go-rithm in WEKA is de-rived from the ab-strac t \OT1/cmtt/m/n/10 weka.classifiers.Classifier [10] [11] [12] Overfull \hbox (2.46945pt too wide) in paragraph at lines 375--376 []\OT1/cmtt/m/n/10 meta.ClassificationViaRegression -W functions.LinearRegressi on LaTeX Warning: Citation `platt98' on page 13 undefined on input line 377. [13] Overfull \hbox (20.43309pt too wide) in paragraph at lines 391--418 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 420--435 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 437--472 [] Underfull \vbox (badness 10000) has occurred while \output is active [14] Overfull \hbox (20.43309pt too wide) in paragraph at lines 474--511 [] [15] Overfull \hbox (0.61818pt too wide) in paragraph at lines 522--523 []\OT1/cmr/m/n/10 The \OT1/cmr/m/it/10 F-Measure \OT1/cmr/m/n/10 is sim-ply 2*P re-ci-sion*Recall/(Precision+Recall), a com-bined Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 0 diaporthe-stem-canker 0.9999672587892333 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 1 diaporthe-stem-canker 0.9999992614503429 diaporthe-stem-can ker[] Overfull \hbox (6.6621pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 2 diaporthe-stem-canker 0.999998948559035 diaporthe-stem-cank er[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 3 diaporthe-stem-canker 0.9999998441238833 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 4 diaporthe-stem-canker 0.9999989997681132 diaporthe-stem-can ker[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 5 rhizoctonia-root-rot 0.9999999395928124 rhizoctonia-root-ro t[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 7 rhizoctonia-root-rot 0.9999994386283236 rhizoctonia-root-ro t[] Underfull \hbox (badness 1953) in paragraph at lines 551--552 \OT1/cmr/m/n/10 dicted class value, the con-fi- Overfull \hbox (48.88585pt too wide) in paragraph at lines 533--555 [] Overfull \hbox (48.88585pt too wide) in paragraph at lines 557--580 [] Overfull \hbox (26.73993pt too wide) in paragraph at lines 592--593 \OT1/cmr/m/n/10 Dividing by the num-ber of in-stances in the test set, i.e. \OT 1/cmtt/m/n/10 wc -l < soybean-test.preds [16] (./includes/learning_curves.tex Overfull \hbox (67.78633pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -c last -i ../$f -o $run/t_$f[] Overfull \hbox (78.94272pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -V -c last -i ../$f -o $run/t0$f[] Overfull \hbox (38.03596pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.Resample -S 0 -Z 83 -c last -i $run/t$nr$f -o $run/t$nrp1$f[] [17]) Overfull \hbox (82.66151pt too wide) in paragraph at lines 663--663 [] \OT1/cmtt/m/n/7 -M "weka.classifiers.meta.ClassificationViaRegression -W weka.classifiers.functions.LinearRegression -- -S 1" \[] ) [18] [19] [20] Chapter 2. (./launching.tex [21] LaTeX Warning: Citation `wekawiki' on page 22 undefined on input line 85. Overfull \hbox (9.861pt too wide) in paragraph at lines 86--87 []\OT1/cmr/bx/n/10 Weka on Source-forge \OT1/cmr/m/n/10 WEKA's project home-pag e on Source-forge.net. LaTeX Warning: Citation `mainextensions' on page 22 undefined on input line 98. [22] LaTeX Warning: Citation `witten' on page 23 undefined on input line 108. ) [23] [24] Chapter 3. (./simplecli.tex [25] [26] Overfull \hbox (67.06445pt too wide) in paragraph at lines 92--94 \OT1/cmr/m/n/10 with a dot (Unix/Linux: \OT1/cmtt/m/n/10 ./some/other/path/file \OT1/cmr/m/n/10 ; Win-dows: .$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Some$\OMS/cmsy /m/n/10 n$\OT1/cmr/m/n/10 Other$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Path$\OMS/cm sy/m/n/10 n$\OT1/cmr/m/n/10 file). ) [27] [28] Chapter 4. (./explorer.tex LaTeX Warning: Citation `explorertabs' on page 29 undefined on input line 52. [29] [30] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 298--308 [34] [35] [36] [37] LaTeX Warning: Citation `drummond' on page 38 undefined on input line 517. LaTeX Warning: Citation `explorervisplugins' on page 38 undefined on input line 521. [38] LaTeX Warning: Reference `sec:classifier' on page 39 undefined on input line 54 6. [39] [40] [41] LaTeX Warning: Reference `sec:classifier' on page 42 undefined on input line 64 0. [42] Underfull \hbox (badness 10000) in paragraph at lines 657--666 [43] [44]) [45] [46] Chapter 5. (./experimenter.tex [47] [48] Underfull \vbox (badness 1082) has occurred while \output is active [49] [50] LaTeX Warning: Citation `quinlan' on page 51 undefined on input line 152. LaTeX Warning: Citation `bengio' on page 51 undefined on input line 154. [51] [52] [53] Underfull \vbox (badness 10000) has occurred while \output is active [54] [55] [56] Underfull \vbox (badness 7704) has occurred while \output is active [57] [58] [59] Underfull \vbox (badness 10000) has occurred while \output is active [60] Overfull \hbox (74.99634pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme {weka.classifiers.rules.ZeroR,weka.cl assifiers.trees.J48}[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme_version_ID {48055541465867954,-217733 168393644444}[] [61] Overfull \hbox (1.49698pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Summary {'Number of leaves: 3\nSize of the tree: 5\n',[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 iris,1,weka.classifiers.rules.ZeroR,,48055541465867954,2005 1221.033,99,51,[] Overfull \hbox (69.74638pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 17,34,0,33.333333,66.666667,0,0,0.444444,0.471405,100,100,8 0.833088,80.833088,[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 0,1.584963,1.584963,0,0,0,0,1,17,1,34,0,0,0,0,0.333333,1,0. 5,0.5,0,0,?,?,?,?[] [62] [63] Underfull \vbox (badness 10000) has occurred while \output is active [64] Underfull \vbox (badness 10000) has occurred while \output is active [65] [66] [67] Overfull \hbox (38.24666pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 ClassifierSplitEvaluator: weka.classifiers.trees.J48 -C 0.25 -M 2(version[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Correctly Classified Instances 47 92. 1569 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 4 7. 8431 %[] [68] [69] [70] Overfull \hbox (0.2135pt too wide) in paragraph at lines 584--585 []\OT1/cmr/m/n/10 As with the other Re-sult-Pro-duc-ers, ad-di-tional schemes c an be de-fined. When Underfull \vbox (badness 10000) has occurred while \output is active [71] Underfull \vbox (badness 10000) has occurred while \output is active [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 605--610 Overfull \hbox (34.37631pt too wide) in paragraph at lines 613--614 [] [74] [75] Overfull \hbox (8.24261pt too wide) in paragraph at lines 656--657 [] [76] LaTeX Warning: Citation `hsql' on page 77 undefined on input line 667. LaTeX Warning: Citation `mysql' on page 77 undefined on input line 667. Overfull \hbox (17.30408pt too wide) in paragraph at lines 686--687 []\OT1/cmr/m/n/10 Additional jar archives, i.e., JDBC drivers, are stored in \O T1/cmtt/m/n/10 /home/johndoe/jars\OT1/cmr/m/n/10 . LaTeX Warning: Citation `subversion' on page 77 undefined on input line 690. [77] LaTeX Warning: Citation `subversion' on page 78 undefined on input line 733. Overfull \hbox (12.8892pt too wide) in paragraph at lines 737--738 []\OT1/cmr/m/n/10 Create a script, called \OT1/cmtt/m/n/10 /home/johndoe/remote []engine/startRemoteEngine\OT1/cmr/m/n/10 , Overfull \hbox (22.24724pt too wide) in paragraph at lines 745--745 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/hsqldb.jar:remoteEngine.jar \[] Overfull \hbox (16.99728pt too wide) in paragraph at lines 753--753 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/mysql.jar:remoteEngine.jar \[] [78] Overfull \hbox (75.70413pt too wide) in paragraph at lines 778--779 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:h sqldb:hsql://server[]name/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (11.41405pt too wide) in paragraph at lines 778--779 \OT1/cmr/m/n/9 server (e.g., \OT1/cmtt/m/n/9 jdbcURL=jdbc:hsqldb:hsql://dodo.co mpany.com/experiment\OT1/cmr/m/n/9 ). Overfull \hbox (89.44553pt too wide) in paragraph at lines 785--785 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/hsqldb.jar:remoteEngine.jar:/home/j ohndoe/weka/weka.jar \[] Overfull \hbox (70.97919pt too wide) in paragraph at lines 791--792 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:m ysql://server[]name:3306/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (84.72058pt too wide) in paragraph at lines 798--798 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/mysql.jar:remoteEngine.jar:/home/jo hndoe/weka/weka.jar \[] [79] Overfull \hbox (10.74715pt too wide) in paragraph at lines 832--833 []\OT1/cmtt/m/n/10 01:13:19: RemoteExperiment (//blabla.company.com/RemoteEngin e) Overfull \hbox (9.27715pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 java.sql.SQLException: Table already exists: EXPERIMENT[]INDEX Overfull \hbox (2.55719pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 LONGVARCHAR, Experiment[]setup LONGVARCHAR, Result[]table INT )] Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 (//blabla.company.com/RemoteEngine) (sub)experiment (datataset Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 vineyard.arff) failed : java.sql.SQLException: Table already Overfull \hbox (11.5871pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 Experiment[]index ( Experiment[]type LONGVARCHAR, Experiment[] setup [80] LaTeX Warning: Citation `subversion' on page 81 undefined on input line 840. [81] [82] Underfull \vbox (badness 10000) has occurred while \output is active [83] [84] [85] LaTeX Warning: Citation `bengio' on page 86 undefined on input line 934. LaTeX Warning: Citation `witten' on page 86 undefined on input line 934. Underfull \vbox (badness 10000) has occurred while \output is active [86] ) [87] [88] Chapter 6. (./knowledgeflow.tex [89] [90] [91] [92] LaTeX Warning: Reference `exampleroc' on page 93 undefined on input line 132. Overfull \hbox (36.43697pt too wide) in paragraph at lines 133--135 []\OT1/cmr/m/it/10 ClassifierPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate the per-for-mance of batch trained/tested Overfull \hbox (35.54247pt too wide) in paragraph at lines 137--139 []\OT1/cmr/m/it/10 ClustererPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate t he per-for-mance of batch trained/tested [93] [94] [95] [96] LaTeX Warning: Citation `multipleroc' on page 97 undefined on input line 265. Overfull \hbox (11.53027pt too wide) in paragraph at lines 268--269 [] [97] [98] Overfull \hbox (24.88557pt too wide) in paragraph at lines 359--360 [] [99] [100] Overfull \hbox (1.07347pt too wide) in paragraph at lines 435--453 \OT1/cmr/m/n/10 mech-a-nism. Plu-g-ins are in-stalled in a di-rec-tory called [ ][]\OT1/cmtt/m/n/10 .knowledgeFlow/plugins Overfull \hbox (69.74638pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ jar tvf /Users/mhall/.knowledgeFlow/plugins/ kettle/kettleKF.jar[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:20 NZDT 2008 weka/gui/beans/icons/Ke ttleInput.gif[] Overfull \hbox (85.49625pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:18 NZDT 2008 weka/gui/beans/icons/Ke ttleInput_animated.gif[] Overfull \hbox (17.24684pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 1839 Wed Feb 20 13:59:08 NZDT 2008 weka/gui/beans/KettleIn put.class[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 174 Tue Feb 19 15:27:24 NZDT 2008 weka/gui/beans/KettleIn putBeanInfo.class[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ more /Users/mhall/.knowledgeFlow/plugins/ket tle/Beans.props[] ) [101] [102] Chapter 7. (./arffviewer.tex [103] [104] [105] [106] ) [107] [108] Chapter 8. (./bayesnet.tex [109] LaTeX Warning: Reference `eq.infer' on page 110 undefined on input line 93. [110] Underfull \vbox (badness 2103) has occurred while \output is active [111] LaTeX Warning: Reference `sec.estimate' on page 112 undefined on input line 178 . LaTeX Warning: Citation `Moore' on page 112 undefined on input line 181. Overfull \hbox (1.83237pt too wide) in paragraph at lines 180--185 \OT1/cmr/m/n/10 ent from the ADTree clas-si-fier al-go-rithm from \OT1/cmtt/m/n /10 weka.classifiers.tree.ADTree\OT1/cmr/m/n/10 . [112] [113] LaTeX Warning: Citation `bouck1995' on page 114 undefined on input line 252. LaTeX Warning: Citation `CooperHerskovits1992' on page 114 undefined on input l ine 281. LaTeX Warning: Citation `heckerman95' on page 114 undefined on input line 287. LaTeX Warning: Citation `CooperHerskovits1992' on page 114 undefined on input l ine 294. LaTeX Warning: Citation `Buntine1996' on page 114 undefined on input line 302. [114] LaTeX Warning: Citation `ChengGreiner1999' on page 115 undefined on input line 313. LaTeX Warning: Citation `friedman97' on page 115 undefined on input line 313. LaTeX Warning: Citation `chow1968' on page 115 undefined on input line 315. LaTeX Warning: Citation `bouck1995' on page 115 undefined on input line 317. Underfull \hbox (badness 10000) in paragraph at lines 331--336 LaTeX Warning: Citation `bouck1995' on page 115 undefined on input line 337. [115] Underfull \hbox (badness 10000) in paragraph at lines 352--356 Underfull \hbox (badness 10000) in paragraph at lines 361--376 [116] LaTeX Warning: Citation `verma' on page 117 undefined on input line 392. Overfull \hbox (38.44424pt too wide) has occurred while \output is active \OT1/cmr/m/sl/10 8.3. CONDITIONAL INDEPENDENCE TEST BASED STRUCTURE LEARNING \ OT1/cmr/m/n/10 117 [117] LaTeX Warning: Citation `verma' on page 118 undefined on input line 409. Overfull \hbox (106.49606pt too wide) in paragraph at lines 426--426 [] \OT1/cmtt/m/n/10 Rule 5: if no edges are directed then take a rand om one (first we can find)[] Underfull \hbox (badness 10000) in paragraph at lines 434--442 [118] LaTeX Warning: Reference `sec.score' on page 119 undefined on input line 451. Underfull \vbox (badness 1867) has occurred while \output is active [119] LaTeX Warning: Reference `sec.score' on page 120 undefined on input line 481. [120] LaTeX Warning: Citation `bouck1995' on page 121 undefined on input line 516. [121] Overfull \hbox (28.27066pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Sets test file. If missing, a cross-validation will b e performed on the[] [122] Overfull \hbox (14.09583pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Retrieves the options from the XML-data instead of th e command line.[] [123] Overfull \hbox (57.99673pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [124] Overfull \hbox (42.24687pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [125] Overfull \hbox (42.24687pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [126] Overfull \hbox (42.24687pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 When determining whether an edge exists a search is performed[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 for a set Z that separates the nodes. MaxCardinalit y determines[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 the maximum size of the set Z. This greatly influen ces the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] [127] Overfull \hbox (31.74696pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [128] Overfull \hbox (42.24687pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [129] Overfull \hbox (42.24687pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 961--961 [] \OT1/cmtt/m/n/10 Name of file containing network structure in BIF fo rmat[] [130] [131] Overfull \hbox (641.9914pt too wide) in paragraph at lines 1043--1043 []\OT1/cmtt/m/n/10 Scheme: weka.classifiers.bayes.BayesNet -D -B iris.xml -Q weka.classifiers.bayes.net.search.local.K2 -- -P 2 -S BAYES -E weka.classif iers.bayes.net.estimate.SimpleEstimator -- -A 0.5[] Overfull \hbox (106.49606pt too wide) in paragraph at lines 1061--1061 []\OT1/cmtt/m/n/10 Relation: iris-weka.filters.unsupervised.attribute.Discr etize-B2-M-1.0-Rfirst-last[] LaTeX Warning: Citation `Moore' on page 132 undefined on input line 1062. [132] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Correctly Classified Instances 116 77. 3333 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 34 22. 6667 %[] [133] [134] Underfull \hbox (badness 10000) in paragraph at lines 1181--1191 [135] Overfull \hbox (109.99007pt too wide) in paragraph at lines 1199--1200 [] Underfull \vbox (badness 4569) has occurred while \output is active [136] LaTeX Warning: Citation `cozman' on page 137 undefined on input line 1230. Overfull \hbox (31.52597pt too wide) in paragraph at lines 1232--1244 \OT1/cmr/m/n/10 vari-ables are dis-cretized us-ing the \OT1/cmtt/m/n/10 weka.fi lters.supervised.attribute.Discretize Underfull \vbox (badness 10000) has occurred while \output is active [137] [138] Underfull \hbox (badness 10000) in paragraph at lines 1298--1308 Overfull \hbox (5.15332pt too wide) in paragraph at lines 1316--1319 []\OT1/cmr/m/n/10 The Gen-er-ate Net-work menu al-lows gen-er-a-tion of a com-p lete ran-dom Bayesian [139] [140] LaTeX Warning: Citation `lauritzen' on page 141 undefined on input line 1368. Overfull \hbox (17.96149pt too wide) in paragraph at lines 1375--1376 [] Underfull \vbox (badness 10000) has occurred while \output is active [141] Overfull \hbox (11.45515pt too wide) in paragraph at lines 1409--1410 [] [142] [143] [144] Underfull \vbox (badness 1675) has occurred while \output is active [145] [146] [147] Overfull \hbox (76.10909pt too wide) in paragraph at lines 1570--1576 []\OT1/cmr/m/n/10 Create a class that de-rives from \OT1/cmtt/m/n/10 weka.class ifiers.bayes.net.search.SearchAlgorithm\OT1/cmr/m/n/10 . Overfull \hbox (6.74959pt too wide) in paragraph at lines 1570--1576 \OT1/cmr/m/n/10 validation based, you prob-a-bly want to de-rive from \OT1/cmtt /m/n/10 ScoreSearchAlgorithm\OT1/cmr/m/n/10 , Overfull \hbox (56.55356pt too wide) in paragraph at lines 1570--1576 \OT1/cmtt/m/n/10 CISearchAlgorithm \OT1/cmr/m/n/10 or \OT1/cmtt/m/n/10 CVSearch Algorithm \OT1/cmr/m/n/10 in-stead of de-riv-ing from \OT1/cmtt/m/n/10 SearchAl gorithm Overfull \hbox (29.2748pt too wide) in paragraph at lines 1577--1582 \OT1/cmtt/m/n/10 public void buildStructure(BayesNet bayesNet, Instances instan ces)\OT1/cmr/m/n/10 . Overfull \hbox (6.05424pt too wide) in paragraph at lines 1577--1582 \OT1/cmr/m/n/10 You can ac-cess the par-entsets us-ing \OT1/cmtt/m/n/10 bayesNe t.getParentSet(iAttribute) Overfull \hbox (10.74715pt too wide) in paragraph at lines 1583--1587 \OT1/cmtt/m/n/10 bayesNet.getParentSet(iAttribute).AddParent(iParent, instances ) Overfull \hbox (36.44255pt too wide) in paragraph at lines 1588--1596 []\OT1/cmr/m/n/10 Alternatively, im-ple-ment \OT1/cmtt/m/n/10 public void searc h(BayesNet bayesNet, Instances Overfull \hbox (2.57175pt too wide) in paragraph at lines 1617--1621 \OT1/cmtt/m/n/10 weka.classifiers.bayes.net.estimate.BayesNetEstimator\OT1/cmr/ m/n/10 . Let's say Overfull \hbox (29.2748pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public void updateClassifier(BayesNet bayesNet, Instance insta nce)\OT1/cmr/m/n/10 , Overfull \hbox (31.74696pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public double[] distributionForInstance(BayesNet bayesNet, Ins tance [148] Overfull \hbox (7.02576pt too wide) in paragraph at lines 1644--1648 \OT1/cmr/m/n/10 Use the class \OT1/cmtt/m/n/10 weka.filters.unsupervised.attrib ute.Discretize \OT1/cmr/m/n/10 to dis-cretize Overfull \hbox (27.74675pt too wide) in paragraph at lines 1644--1648 \OT1/cmtt/m/n/10 java weka.filters.unsupervised.attribute.Discretize -B 3 -i in file.arff Overfull \hbox (1.49698pt too wide) in paragraph at lines 1655--1659 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -B -N 10 -A 9 -C Overfull \hbox (1.49698pt too wide) in paragraph at lines 1661--1665 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -N 15 -A 20 -C 3 Overfull \hbox (22.4968pt too wide) in paragraph at lines 1667--1671 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -F alarm.xml -M 1000 [149] [150] Overfull \hbox (5.66734pt too wide) in paragraph at lines 1731--1735 []\OT1/cmr/m/n/10 Only leave-one-out, k-fold and cu-mu-la-tive cross-validation are im-ple-mented. Overfull \hbox (8.08392pt too wide) in paragraph at lines 1731--1735 \OT1/cmr/m/n/10 These im-ple-men-ta-tions can be made more ef-fi-cient and othe r cross-validation ) [151] [152] [153] [154] Chapter 9. (./arff.tex Overfull \hbox (6.74693pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 % (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.na sa.gov)[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 @ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris- virginica}[] [155] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [156] Overfull \hbox (2.27603pt too wide) in paragraph at lines 116--117 \OT1/cmr/m/n/10 pos-si-ble val-ues: $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 nomina l-name1$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n /10 nominal-name2$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT 1/cmtt/m/n/10 nominal-name3$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , [157] [158] [159]) [160] Chapter 10. (./xrff.tex [161] Overfull \hbox (80.24629pt too wide) in paragraph at lines 127--127 [] \OT1/cmtt/m/n/10 [] [162] [163] [164]) [165] [166] Chapter 11. (./converters.tex [167] Overfull \hbox (10.74715pt too wide) in paragraph at lines 70--70 [] \OT1/cmtt/m/n/10 java weka.core.converters.CSVSaver -i iris.arff -o iris .csv[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 99--99 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseLoader -Q "select * fro m employee"[] [168] Overfull \hbox (15.9971pt too wide) in paragraph at lines 104--104 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseSaver -i iris.arff -T iris[] ) [169] [170] Chapter 12. (./stemmers.tex Overfull \hbox (68.33246pt too wide) in paragraph at lines 29--30 \OT1/cmr/m/n/10 Weka con-tains a wrap-per class for the Snow-ball (home-page: [ ][][][]) [171] Overfull \hbox (46.33209pt too wide) in paragraph at lines 49--50 []\OT1/cmr/m/n/10 within the String-ToWord-Vec-tor (pack-age \OT1/cmtt/m/n/10 w eka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ) Overfull \hbox (4.85867pt too wide) in paragraph at lines 73--74 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 GenericObjectEditor.props\OT1/cmr/m/n/10 / \OT1/cmtt/m/n/10 GenericPropertiesCreator.props \OT1/cmr/m/n/10 file ) [172] Chapter 13. (./databases.tex Overfull \hbox (9.77429pt too wide) in paragraph at lines 37--38 []\OT1/cmtt/m/n/10 DatabaseUtils.props.mssqlserver2005 \OT1/cmr/m/n/10 - MS SQL Server 2005 ($\OML/cmm/m/it/10 >\OT1/cmr/m/n/10 =$3.4.11, Overfull \hbox (9.10817pt too wide) in paragraph at lines 39--41 []\OT1/cmtt/m/n/10 DatabaseUtils.props.odbc \OT1/cmr/m/n/10 - ODBC ac-cess via Sun's ODBC/JDBC bridge, Underfull \hbox (badness 10000) in paragraph at lines 46--47 Underfull \hbox (badness 10000) in paragraph at lines 48--49 [173] [174] Overfull \hbox (89.10794pt too wide) in paragraph at lines 103--108 \OT1/cmtt/m/n/10 jdbc:postgresql://server.my.domain:5432/MyDatabase?user=$\OML/ cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 &passwor d=$\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$ Underfull \vbox (badness 3679) has occurred while \output is active [175] [176] Overfull \hbox (27.9972pt too wide) in paragraph at lines 183--185 [][][][] Overfull \hbox (0.8047pt too wide) in paragraph at lines 201--202 \OT1/cmr/m/n/10 com-mand \OT1/cmtt/m/n/10 java weka.core.SystemInfo \OT1/cmr/m/ n/10 and check whether the prop- ) [177] [178] Chapter 14. (./windows_databases.tex [179] [180]) [181] [182] [183] [184] Chapter 15. (./research.tex Overfull \hbox (31.02701pt too wide) in paragraph at lines 32--33 \OT1/cmr/m/n/10 ter-face it is now easy to ex-tract all the pa-per ref-er-ences via \OT1/cmtt/m/n/10 weka.core.ClassDiscovery [185] (./includes/get_wekatechinfo.tex [186] Overfull \hbox (90.0991pt too wide) in paragraph at lines 124--124 []\OT1/cmtt/m/n/7 TECHINFOHANDLERS=`$JAVA weka.core.ClassDiscovery $TECHINFOHAN DLER $PACKAGES | grep "\. weka" | sed s/".*weka"/weka/g`[] )) [187] [188] Chapter 16. (./using_api.tex Underfull \hbox (badness 10000) in paragraph at lines 35--40 [189] LaTeX Warning: Citation `wekawiki' on page 190 undefined on input line 108. LaTeX Warning: Citation `wekaexamples' on page 190 undefined on input line 111. Overfull \hbox (3.8326pt too wide) in paragraph at lines 104--113 \OT1/cmr/m/n/10 support-vector ma-chine clas-si-fier \OT1/cmr/m/it/10 SMO \OT1/ cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.classifiers.functions\OT1/cmr/m/n/10 ) [190] Overfull \hbox (8.05441pt too wide) in paragraph at lines 125--130 \OT1/cmr/m/n/10 method, it is best to have a look at the \OT1/cmtt/m/n/10 setOp tions(String[]) \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 getOptions() Overfull \hbox (6.08145pt too wide) in paragraph at lines 140--148 []\OT1/cmr/m/n/10 A \OT1/cmtt/m/n/10 SelectedTag \OT1/cmr/m/n/10 gets con-struc ted us-ing the ar-ray of all pos-si-ble \OT1/cmtt/m/n/10 weka.core.Tag Overfull \hbox (11.99689pt too wide) in paragraph at lines 156--156 [] \OT1/cmtt/m/n/10 setEvaluation(new SelectedTag(EVALUATION_CC, TAGS_EVALU ATION));[] [191] LaTeX Warning: Reference `databases' on page 192 undefined on input line 168. LaTeX Warning: Citation `wekaexamples' on page 192 undefined on input line 174. Overfull \hbox (1.93398pt too wide) in paragraph at lines 178--183 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 attribute(int) \OT1/cmr/m/n/10 method. Thi s method re-turns \OT1/cmtt/m/n/10 weka.core.Attribute Overfull \hbox (27.33139pt too wide) in paragraph at lines 203--206 []\OT1/cmr/m/n/10 The \OT1/cmtt/m/n/10 DataSource \OT1/cmr/m/n/10 class (in-ner class of the \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils [192] Underfull \hbox (badness 10000) in paragraph at lines 246--249 Overfull \hbox (3.25064pt too wide) in paragraph at lines 299--301 \OT1/cmr/m/n/10 loaded into mem-ory and then pro-vided row-by-row (``pseudo-inc remental''). [193] [194] LaTeX Warning: Citation `wekaexamples' on page 195 undefined on input line 319. Overfull \hbox (21.69957pt too wide) in paragraph at lines 318--321 \OT1/cmr/m/n/10 The class \OT1/cmtt/m/n/10 wekaexamples.core.CreateInstances \O T1/cmr/m/n/10 of the \OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 collectio n[[]] Overfull \hbox (41.44293pt too wide) in paragraph at lines 332--335 \OT1/cmr/m/n/10 For all of the dif-fer-ent at-tribute types, WEKA uses the same class, \OT1/cmtt/m/n/10 weka.core.Attribute\OT1/cmr/m/n/10 , Overfull \hbox (0.24724pt too wide) in paragraph at lines 351--351 []\OT1/cmtt/m/n/10 Attribute date = new Attribute("name_of_attr", "yyyy-MM-dd" );[] Overfull \hbox (36.99692pt too wide) in paragraph at lines 372--372 []\OT1/cmtt/m/n/10 Attribute string = new Attribute("name_of_attr", (FastVecto r) null);[] Underfull \vbox (badness 10000) has occurred while \output is active [195] Overfull \vbox (28.493pt too high) has occurred while \output is active [196] Overfull \hbox (21.24706pt too wide) in paragraph at lines 390--390 []\OT1/cmtt/m/n/10 Attribute relational = new Attribute("name_of_attr", rel_st ruct);[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 408--408 [] \OT1/cmtt/m/n/10 Instances dataset = new Instances("Test-dataset", attribu tes, 0);[] Overfull \hbox (9.12917pt too wide) in paragraph at lines 418--421 \OT1/cmr/m/n/10 to it, row by row. There are ba-si-cally two con-struc-tors of the \OT1/cmtt/m/n/10 weka.core.Instance Overfull \hbox (12.8311pt too wide) in paragraph at lines 422--426 []\OT1/cmtt/m/n/10 Instance(double weight, double[] attValues) \OT1/cmr/m/n/10 -- gen-er-ates an \OT1/cmtt/m/n/10 Instance Overfull \vbox (34.59024pt too high) has occurred while \output is active [197] Overfull \hbox (21.24706pt too wide) in paragraph at lines 468--468 []\OT1/cmtt/m/n/10 values[3] = data.attribute(3).addStringValue("This is a str ing");[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 480--480 []\OT1/cmtt/m/n/10 Instances dataRel = new Instances(data.attribute(4).relatio n(),0);[] [198] Overfull \hbox (24.165pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 Simply gen-er-at-ing an ARFF file is achieved us-ing the static \OT1/cmtt/m/n/10 DataGenerator.makeData Overfull \hbox (28.96251pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 method. In or-der to write to a file, the gen-er-a-tor needs to have a \OT1/cmtt/m/n/10 java.io.PrintWriter Overfull \hbox (6.74693pt too wide) in paragraph at lines 520--520 [] \OT1/cmtt/m/n/10 new java.io.BufferedWriter(new java.io.FileWriter("rdg1.ar ff")));[] [199] LaTeX Warning: Reference `api_filtering' on page 200 undefined on input line 56 9. Overfull \hbox (20.5538pt too wide) in paragraph at lines 567--570 []\OT1/cmr/m/n/10 Using the \OT1/cmtt/m/n/10 Randomize \OT1/cmr/m/n/10 fil-ter (pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.instance\OT1/cmr/m/n/10 ). [200] LaTeX Warning: Citation `wekaexamples' on page 201 undefined on input line 650. [201] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 remove.setInputFormat(data); // inform filter abo ut dataset[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 // **AFTER** setting options[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 Instances newData = Filter.useFilter(data, remove); // ap ply filter[] Overfull \hbox (18.08133pt too wide) in paragraph at lines 672--677 \OT1/cmr/m/n/10 A com-mon trap to fall into is set-ting op-tions \OT1/cmr/bx/n/ 10 af-ter \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 setInputFormat(Instances) Overfull \hbox (5.97029pt too wide) in paragraph at lines 689--693 \OT1/cmr/m/n/10 with the \OT1/cmtt/m/n/10 Standardize \OT1/cmr/m/n/10 fil-ter ( pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ): [202] Overfull \hbox (17.5531pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 like \OT1/cmtt/m/n/10 FilteredClassifier \OT1/cmr/m/n/10 (pack- age \OT1/cmtt/m/n/10 weka.classifiers.meta\OT1/cmr/m/n/10 ), \OT1/cmtt/m/n/10 F ilteredClusterer Overfull \hbox (12.72011pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.clusterers\OT1/cmr/m/n/10 ), \O T1/cmtt/m/n/10 FilteredAssociator \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 we ka.associations\OT1/cmr/m/n/10 ) Overfull \hbox (27.16393pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 FilteredAttributeEval\OT1/cmr/m/n/10 /\OT1 /cmtt/m/n/10 FilteredSubsetEval \OT1/cmr/m/n/10 (in \OT1/cmtt/m/n/10 weka.attri buteSelection\OT1/cmr/m/n/10 ). LaTeX Warning: Reference `api_classification' on page 203 undefined on input li ne 729. [203] LaTeX Warning: Citation `wekaexamples' on page 204 undefined on input line 780. LaTeX Warning: Reference `api_loading_data' on page 204 undefined on input line 823. Overfull \hbox (20.1095pt too wide) in paragraph at lines 817--824 \OT1/cmr/m/n/10 All in-cre-men-tal clas-si-fiers in WEKA im-ple-ment the in-ter -face \OT1/cmtt/m/n/10 UpdateableClassifier Overfull \hbox (5.91695pt too wide) in paragraph at lines 831--833 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row, by call-ing the \OT1/cmtt/m/n/10 updateClassifier(Instance) [204] [205] Overfull \hbox (21.05566pt too wide) in paragraph at lines 872--874 \OT1/cmr/m/n/10 The eval-u-a-tion step, in-clud-ing col-lec-tion of statis-tics , is per-formed by the \OT1/cmtt/m/n/10 Evaluation LaTeX Warning: Reference `api_randomizing_data' on page 206 undefined on input line 890. [206] Overfull \hbox (11.99689pt too wide) in paragraph at lines 910--910 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 940--940 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] [207] Overfull \hbox (11.55396pt too wide) in paragraph at lines 950--952 []\OT1/cmtt/m/n/10 toClassDetailsString \OT1/cmr/m/n/10 -- out-puts TP/FP rates , pre-ci-sion, re-call, F-measure, Overfull \hbox (0.47084pt too wide) in paragraph at lines 952--954 []\OT1/cmtt/m/n/10 toCumulativeMarginDistributionString \OT1/cmr/m/n/10 -- out- puts the cu-mu-la-tive mar- [208] LaTeX Warning: Reference `api_filtering_onthefly' on page 209 undefined on inpu t line 996. Overfull \hbox (27.74675pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 Instances unlabeled = DataSource.read("/some/where/unlabe led.arff");[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 double clsLabel = tree.classifyInstance(unlabeled.insta nce(i));[] Overfull \hbox (6.74693pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 double[] dist = cls.distributionForInstance(test.instan ce(i));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.instance(i).toString(test.classIn dex()) + " - ");[] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.classAttribute().value((int) pred ) + " - ");[] [209] LaTeX Warning: Citation `wekaexamples' on page 210 undefined on input line 1069 . Overfull \hbox (12.30984pt too wide) in paragraph at lines 1083--1087 []\OT1/cmr/m/it/10 build the model \OT1/cmr/m/n/10 with train-ing data -- call- ing the \OT1/cmtt/m/n/10 buildClusterer(Instances) Overfull \hbox (0.94284pt too wide) in paragraph at lines 1104--1108 \OT1/cmr/m/n/10 Incremental clus-ter-ers in WEKA im-ple-ment the in-ter-face \O T1/cmtt/m/n/10 UpdateableClusterer Overfull \hbox (13.7781pt too wide) in paragraph at lines 1112--1114 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row by call-ing the the \OT1/cmtt/m/n/10 updateClusterer(Instance) Underfull \vbox (badness 10000) has occurred while \output is active [210] Overfull \vbox (79.67348pt too high) has occurred while \output is active [211] [212] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1160--1160 [] \OT1/cmtt/m/n/10 System.out.println(ClusterEvaluation.evaluateClusterer(new EM(), options));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 DensityBasedClusterer clusterer = new ... // the clust erer to evaluate[] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 new Random(1)); // and rando m number generator[] [213] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 filter.setAttributeIndices("" + (data.classIndex() + 1) );[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 Instances dataClusterer = Filter.useFilter(data, filter );[] [214] Overfull \hbox (3.69315pt too wide) in paragraph at lines 1247--1249 []\OT1/cmtt/m/n/10 clusterInstance(Instance) \OT1/cmr/m/n/10 -- de-ter-mines th e clus-ter the \OT1/cmtt/m/n/10 Instance \OT1/cmr/m/n/10 would Overfull \hbox (6.74693pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 int cluster = clusterer.clusterInstance(dataset2.instan ce(i));[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 double[] dist = clusterer.distributionForInstance(datas et2.instance(i));[] [215] Underfull \hbox (badness 10000) in paragraph at lines 1285--1290 Overfull \hbox (3.35565pt too wide) in paragraph at lines 1293--1298 []\OT1/cmr/m/it/10 single at-tribute eval-u-a-tors \OT1/cmr/m/n/10 -- per-form eval-u-a-tions on sin-gle at-tributes. These LaTeX Warning: Citation `wekaexamples' on page 216 undefined on input line 1339 . [216] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 AttributeSelectedClassifier classifier = new AttributeSel ectedClassifier();[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 evaluation.crossValidateModel(classifier, data, 10, new R andom(1));[] [217] Overfull \hbox (27.4348pt too wide) in paragraph at lines 1383--1388 \OT1/cmr/m/n/10 train-ing a clas-si-fier, then the fil-ter ap-proach is the rig ht one. The \OT1/cmtt/m/n/10 AttributeSelection [218] [219] LaTeX Warning: Reference `api_loading_data' on page 220 undefined on input line 1459. LaTeX Warning: Citation `wekaexamples' on page 220 undefined on input line 1462 . Overfull \hbox (50.86061pt too wide) in paragraph at lines 1465--1470 \OT1/cmr/m/n/10 ing the data or use an ex-plicit con-verter (all savers are lo- cated in the \OT1/cmtt/m/n/10 weka.core.converters Overfull \hbox (22.94261pt too wide) in paragraph at lines 1471--1474 []\OT1/cmr/m/n/10 Use the \OT1/cmtt/m/n/10 DataSink \OT1/cmr/m/n/10 class (in-n er class of \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils\OT1/cmr/m/n/10 ), [220] [221] LaTeX Warning: Citation `wekaexamples' on page 222 undefined on input line 1562 . Overfull \hbox (34.02615pt too wide) in paragraph at lines 1575--1578 \OT1/cmr/m/n/10 tions, us-ing the \OT1/cmtt/m/n/10 ThresholdCurve \OT1/cmr/m/n/ 10 class (pack-age \OT1/cmtt/m/n/10 weka.classifiers.evaluation\OT1/cmr/m/n/10 ). Overfull \hbox (30.6928pt too wide) in paragraph at lines 1580--1583 \OT1/cmr/m/n/10 in-stance of the \OT1/cmtt/m/n/10 ThresholdVisualizePanel \OT1/ cmr/m/n/10 class (pack-age \OT1/cmtt/m/n/10 weka.gui.visualize\OT1/cmr/m/n/10 ) . Overfull \hbox (5.4972pt too wide) in paragraph at lines 1594--1594 []\OT1/cmtt/m/n/10 Instances curve = tc.getCurve(eval.predictions(), classInde x);[] Overfull \hbox (15.9971pt too wide) in paragraph at lines 1610--1610 [] \OT1/cmtt/m/n/10 Utils.doubleToString(ThresholdCurve.getROCArea(curve),4)+ ")");[] [222] LaTeX Warning: Citation `dotformat' on page 223 undefined on input line 1641. Overfull \hbox (1.49698pt too wide) in paragraph at lines 1665--1665 [] \OT1/cmtt/m/n/10 JFrame jf = new JFrame("Weka Classifier Tree Visualizer: J48");[] [223] LaTeX Warning: Citation `dotformat' on page 224 undefined on input line 1673. LaTeX Warning: Citation `cozman' on page 224 undefined on input line 1674. [224] [225] Overfull \hbox (17.24684pt too wide) in paragraph at lines 1778--1778 [] \OT1/cmtt/m/n/10 Object o[] = SerializationHelper.readAll("/some/where/j48 .model");[] ) [226] Chapter 17. (./extending.tex LaTeX Warning: Reference `genericobjecteditor' on page 227 undefined on input l ine 35. [227] (./extending_classifier.tex Underfull \vbox (badness 10000) has occurred while \output is active [228] Overfull \vbox (64.17354pt too high) has occurred while \output is active [229] [230] [231] Overfull \hbox (6.74693pt too wide) in paragraph at lines 192--192 [] \OT1/cmtt/m/n/10 result.addAll(Arrays.asList(super.getOptions())); // sup erclass[] LaTeX Warning: Reference `classifier_capabilities' on page 232 undefined on inp ut line 200. Overfull \hbox (30.47186pt too wide) in paragraph at lines 227--231 \OT1/cmr/m/n/10 re-turns the class prob-a-bil-i-ties ar-ray of the pre-dic-tion for the given \OT1/cmtt/m/n/10 weka.core.Instance [232] Overfull \hbox (42.88777pt too wide) in paragraph at lines 232--243 \OT1/cmr/m/n/10 bel in-dex based on the prob-a-bil-i-ties ar-ray that the \OT1/ cmtt/m/n/10 distributionForInstance(Instance) [233] [234] [235] Underfull \hbox (badness 10000) in paragraph at lines 360--374 Overfull \hbox (0.55939pt too wide) in paragraph at lines 390--397 []\OT1/cmr/m/it/10 multi-instance clas-si-fiers \OT1/cmr/m/n/10 -- in or-der to sig-nal that the spe-cial multi-instance Overfull \hbox (5.27605pt too wide) in paragraph at lines 390--397 \OT1/cmr/m/n/10 instance, \OT1/cmtt/m/n/10 weka.core.MultiInstanceCapabilitiesH andler\OT1/cmr/m/n/10 , which re-turns [236] Overfull \hbox (5.08153pt too wide) in paragraph at lines 441--446 \OT1/cmr/m/n/10 in case of de-scen-dants of the \OT1/cmtt/m/n/10 weka.classifie r.MultipleClassifiersCombiner\OT1/cmr/m/n/10 , Overfull \hbox (14.09583pt too wide) in paragraph at lines 461--461 [] \OT1/cmtt/m/n/9 result.enable(Capability.NOMINAL_CLASS); // only nominal classes allowed[] [237] Overfull \vbox (104.0pt too high) has occurred while \output is active [238] [239] Overfull \hbox (17.24684pt too wide) in paragraph at lines 603--603 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (59.46141pt too wide) in paragraph at lines 640--645 \OT1/cmr/m/n/10 class. The su-per-class for clas-si-fier unit tests is \OT1/cmt t/m/n/10 weka.classifiers.AbstractClassifierTest\OT1/cmr/m/n/10 . ) [240] (./extending_filter.tex LaTeX Warning: Reference `filter_capabilities' on page 241 undefined on input l ine 63. LaTeX Warning: Reference `filter_optionhandling' on page 241 undefined on input line 66. Overfull \hbox (26.02608pt too wide) in paragraph at lines 63--67 \OT1/cmtt/m/n/10 weka.filters.Filter \OT1/cmr/m/n/10 su-per-class does not im-p le-ment the \OT1/cmtt/m/n/10 weka.core.OptionHandler [241] [242] Overfull \hbox (34.38815pt too wide) in paragraph at lines 125--132 \OT1/cmr/m/n/10 de-ter-mine what the out-put for-mat will be (and set if via \O T1/cmtt/m/n/10 setOutputFormat(Instances)\OT1/cmr/m/n/10 ) [243] (./includes/BatchFilter.tex) [244] (./includes/BatchFilter2.tex) [245] (./includes/BatchFilter3.tex) Overfull \vbox (68.45831pt too high) has occurred while \output is active [246] (./includes/StreamFilter.tex) [247] LaTeX Warning: Reference `filter_revisions' on page 248 undefined on input line 236. LaTeX Warning: Reference `classifier_methods' on page 248 undefined on input li ne 247. LaTeX Warning: Reference `classifier_parameters' on page 248 undefined on input line 248. [248] (./includes/SimpleBatch.tex Overfull \hbox (33.25543pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 return "A simple batch filter that adds an additional a ttribute 'blah' at the end "[] Overfull \hbox (7.75507pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [249] LaTeX Warning: Reference `filter_revisions' on page 250 undefined on input line 267. LaTeX Warning: Reference `classifier_methods' on page 250 undefined on input li ne 278. [250] (./includes/SimpleStream.tex Overfull \hbox (7.75507pt too wide) in paragraph at lines 50--50 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [251] LaTeX Warning: Reference `classifier_capabilities' on page 252 undefined on inp ut line 314. Overfull \hbox (15.32312pt too wide) in paragraph at lines 319--322 \OT1/cmr/m/n/10 bu-tions into ac-count. Must im-ple-ment the \OT1/cmtt/m/n/10 w eka.filters.SupervisedFilter LaTeX Warning: Reference `classifier_javadoc' on page 252 undefined on input li ne 337. Overfull \hbox (0.93573pt too wide) in paragraph at lines 336--338 \OT1/cmr/m/n/10 The Javadoc gen-er-a-tion works the same as with clas-si-fiers. See sec-tion ``Javadoc'' LaTeX Warning: Reference `classifier_revisions' on page 252 undefined on input line 348. [252] Overfull \hbox (17.24684pt too wide) in paragraph at lines 360--360 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (77.71982pt too wide) in paragraph at lines 386--390 []\OT1/cmr/m/n/10 Here is an ex-am-ple call for \OT1/cmtt/m/n/10 weka.filters.u nsupervised.attribute.ReplaceMissingValues ) [253] (./extending_other_algorithms.tex Overfull \hbox (1.7496pt too wide) in paragraph at lines 36--39 \OT1/cmr/m/n/10 like the \OT1/cmtt/m/n/10 FilteredClusterer \OT1/cmr/m/n/10 tha t fil-ters the data on-the-fly for the base-clusterer. Underfull \hbox (badness 10000) in paragraph at lines 36--39 Overfull \hbox (56.46068pt too wide) in paragraph at lines 50--55 \OT1/cmr/m/n/10 one way or an-other. \OT1/cmtt/m/n/10 RandomizableClusterer\OT1 /cmr/m/n/10 , \OT1/cmtt/m/n/10 RandomizableDensityBasedClusterer [254] LaTeX Warning: Reference `classifier_capabilities' on page 255 undefined on inp ut line 87. Overfull \hbox (3.24855pt too wide) in paragraph at lines 116--118 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.c lusterers.AbstractClustererTest [255] Overfull \hbox (0.3597pt too wide) in paragraph at lines 137--140 \OT1/cmr/m/n/10 The an-ces-tor for all eval-u-a-tors is the \OT1/cmtt/m/n/10 we ka.attributeSelection.ASEvaluation Underfull \hbox (badness 10000) in paragraph at lines 137--140 [256] Overfull \hbox (10.55435pt too wide) in paragraph at lines 189--192 \OT1/cmr/m/n/10 The an-ces-tor for all search al-go-rithms is the \OT1/cmtt/m/n /10 weka.attributeSelection.ASSearch Underfull \hbox (badness 10000) in paragraph at lines 189--192 Overfull \hbox (45.24818pt too wide) in paragraph at lines 216--220 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ttributeSelection.AbstractEvaluatorTest [257] Overfull \hbox (5.08264pt too wide) in paragraph at lines 228--235 \OT1/cmr/m/n/10 can also im-ple-ment a meta-associator, de-rived from \OT1/cmtt /m/n/10 SingleAssociatorEnhancer\OT1/cmr/m/n/10 . Overfull \hbox (1.49698pt too wide) in paragraph at lines 258--258 [] \OT1/cmtt/m/n/10 public void buildAssociations(Instances data) throws Excep tion {[] LaTeX Warning: Reference `classifier_capabilities' on page 258 undefined on inp ut line 261. [258] Overfull \hbox (1.49698pt too wide) in paragraph at lines 283--283 [] \OT1/cmtt/m/n/10 AbstractAssociator.runAssociator(new FunkyAssociator(), args);[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 290--290 [] \OT1/cmtt/m/n/10 weka.associations.CheckAssociator -W classname [further op tions][] ) Overfull \hbox (18.99841pt too wide) in paragraph at lines 291--62 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ssociations.AbstractAssociatorTest [259] (./extending_explorer.tex Overfull \hbox (11.74733pt too wide) in paragraph at lines 41--44 []\OT1/cmtt/m/n/10 weka.gui.explorer.Explorer.CapabilitiesFilterChangeListener Overfull \hbox (18.02759pt too wide) in paragraph at lines 45--47 []\OT1/cmr/m/n/10 adding the class-name of your class to the Tabs prop-erty in the \OT1/cmtt/m/n/10 Explorer.props LaTeX Warning: Citation `wekaexamples' on page 260 undefined on input line 52. Overfull \hbox (68.49664pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "SQL"; // what's displayed as tab-title, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "Retrieving data from databases"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] [260] Overfull \vbox (91.59024pt too high) has occurred while \output is active [261] Overfull \hbox (31.74696pt too wide) in paragraph at lines 138--138 [] \OT1/cmtt/m/n/10 /** the Load button - makes the data available in the Exp lorer */[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 Instances data = query.retrieveInstances(m_Viewer.g etQuery());[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \vbox (69.0pt too high) has occurred while \output is active [262] [263] Overfull \hbox (68.49664pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "DataGeneration"; // what's displayed as tab-ti tle, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "Generating artificial datasets"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] Overfull \vbox (92.50687pt too high) has occurred while \output is active [264] Overfull \hbox (89.49646pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected GenericObjectEditor m_GeneratorEditor = new Gen ericObjectEditor();[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected JButton m_ButtonGenerate = new JButton("Generat e");[] Overfull \hbox (84.2465pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator generator = (DataGenerator) m_Generator Editor.getValue();[] Overfull \hbox (78.99655pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 String cname = generator.getClass().getName().replace All(".*\\.", "");[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 cmd += " "+Utils.joinOptions(((OptionHandler)genera tor).getOptions());[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator.makeData(generator, generator.getOpti ons());[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (48.0pt too high) has occurred while \output is active [265] Overfull \hbox (84.2465pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 Instances data = new Instances(new StringReader(m_O utput.getText()));[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (81.85202pt too high) has occurred while \output is active [266] LaTeX Warning: Citation `wekawiki' on page 267 undefined on input line 375. Overfull \vbox (57.81944pt too high) has occurred while \output is active [267] LaTeX Warning: Citation `wekaexamples' on page 268 undefined on input line 402. Overfull \hbox (34.60944pt too wide) in paragraph at lines 418--422 \OT1/cmr/m/n/10 home di-rec-tory) un-der the key \OT1/cmtt/m/n/10 weka.gui.visu alize.plugins.VisualizePlugin\OT1/cmr/m/n/10 . [268] [269] LaTeX Warning: Citation `jmathplot' on page 270 undefined on input line 453. )) [270] Chapter 18. (./technical_documentation.tex Underfull \hbox (badness 10000) in paragraph at lines 21--22 [271] Underfull \hbox (badness 10000) in paragraph at lines 81--82 Underfull \hbox (badness 10000) in paragraph at lines 83--84 Underfull \hbox (badness 10000) in paragraph at lines 85--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 96--97 Underfull \hbox (badness 10000) in paragraph at lines 98--99 Underfull \hbox (badness 10000) in paragraph at lines 104--105 Underfull \hbox (badness 10000) in paragraph at lines 106--107 Overfull \hbox (95.24629pt too wide) in paragraph at lines 114--115 [][][]\OT1/cmtt/m/n/10 export CLASSPATH=$CLASSPATH:/home/johndoe/jars/mysql-con nector-java-5.1.7-bin.jar Overfull \hbox (95.24629pt too wide) in paragraph at lines 120--121 [][][]\OT1/cmtt/m/n/10 setenv CLASSPATH $CLASSPATH:/home/johndoe/jars/mysql-con nector-java-5.1.7-bin.jar [272] Underfull \hbox (badness 10000) in paragraph at lines 141--143 Underfull \hbox (badness 10000) in paragraph at lines 146--147 Underfull \hbox (badness 10000) in paragraph at lines 148--149 Underfull \hbox (badness 10000) in paragraph at lines 150--151 Underfull \hbox (badness 10000) in paragraph at lines 152--154 Underfull \hbox (badness 10000) in paragraph at lines 163--165 Underfull \hbox (badness 10000) in paragraph at lines 170--176 [273] Overfull \hbox (7.98488pt too wide) in paragraph at lines 177--178 \OT1/cmr/m/n/10 Here's once again how you start the Weka Main-GUI \OT1/cmr/bx/n /10 with \OT1/cmr/m/n/10 your cur-rent [][]\OT1/cmtt/m/n/10 CLASSPATH Overfull \hbox (0.24724pt too wide) in paragraph at lines 181--182 [][]\OT1/cmtt/m/n/10 java -Xmx128m -classpath "%CLASSPATH%;weka.jar" weka.gui.M ain Underfull \hbox (badness 10000) in paragraph at lines 187--188 Underfull \hbox (badness 10000) in paragraph at lines 189--190 Underfull \hbox (badness 10000) in paragraph at lines 210--211 Underfull \hbox (badness 10000) in paragraph at lines 212--213 Underfull \hbox (badness 10000) in paragraph at lines 214--215 Overfull \hbox (37.9968pt too wide) in paragraph at lines 216--217 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 216--217 Underfull \hbox (badness 10000) in paragraph at lines 219--220 [274] Underfull \hbox (badness 10000) in paragraph at lines 223--224 Overfull \hbox (43.24675pt too wide) in paragraph at lines 225--226 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 245--246 [275] Overfull \hbox (14.55481pt too wide) in paragraph at lines 265--274 \OT1/cmr/m/n/10 run-time (rather than us-ing only those spec-i-fied in the [][] \OT1/cmtt/m/n/10 GenericObjectEditor.props Underfull \hbox (badness 10000) in paragraph at lines 300--306 [276] Overfull \vbox (24.59024pt too high) has occurred while \output is active [277] Underfull \hbox (badness 10000) in paragraph at lines 375--380 Underfull \hbox (badness 10000) in paragraph at lines 381--382 Underfull \hbox (badness 10000) in paragraph at lines 383--384 Underfull \hbox (badness 10000) in paragraph at lines 385--386 Overfull \hbox (3.66528pt too wide) in paragraph at lines 387--390 \OT1/cmr/m/n/10 Where the [][]\OT1/cmtt/m/n/10 []\OT1/cmr/m/n/10 cor-re-s ponds to a key in the [][]\OT1/cmtt/m/n/10 GenericPropertiesCreator.props Overfull \hbox (64.49643pt too wide) in paragraph at lines 412--412 []\OT1/cmtt/m/n/10 # exclude all ResultListeners that also implement the Result Producer interface[] [278] Underfull \hbox (badness 10000) in paragraph at lines 416--427 Overfull \hbox (53.24666pt too wide) in paragraph at lines 428--429 [][][]\OT1/cmtt/m/n/10 java -classpath "/development:/distribution/weka.jar" we ka.gui.GUIChooser Underfull \hbox (badness 10000) in paragraph at lines 428--429 [279] Underfull \hbox (badness 10000) in paragraph at lines 456--457 [280] [281] Underfull \hbox (badness 10000) in paragraph at lines 493--494 Underfull \hbox (badness 10000) in paragraph at lines 495--496 Underfull \hbox (badness 10000) in paragraph at lines 497--498 Underfull \hbox (badness 10000) in paragraph at lines 520--524 [282] Overfull \hbox (17.24684pt too wide) in paragraph at lines 567--567 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 574--577 Underfull \hbox (badness 10000) in paragraph at lines 577--585 [283] Underfull \hbox (badness 10000) in paragraph at lines 586--592 Overfull \hbox (21.24706pt too wide) in paragraph at lines 600--600 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 606--611 Overfull \hbox (26.49701pt too wide) in paragraph at lines 615--615 [] \OT1/cmtt/m/n/10 [] [284] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (32.9956pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (37.72055pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (9.37088pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Underfull \hbox (badness 10000) in paragraph at lines 663--668 [285] Underfull \hbox (badness 10000) in paragraph at lines 722--723 Underfull \hbox (badness 10000) in paragraph at lines 724--725 [286] Overfull \hbox (43.80186pt too wide) in paragraph at lines 749--750 []\OT1/cmr/m/n/10 The DTD for KOML can be found at [][][][] Underfull \hbox (badness 10000) in paragraph at lines 749--750 Underfull \hbox (badness 10000) in paragraph at lines 751--752 Underfull \hbox (badness 10000) in paragraph at lines 753--754 Overfull \hbox (75.44197pt too wide) in paragraph at lines 756--759 \OT1/cmr/m/n/10 put file (see op-tions of [][]\OT1/cmtt/m/n/10 weka.experiment. Experiment []\OT1/cmr/m/n/10 and [][]\OT1/cmtt/m/n/10 weka.experiment.RemoteExp eriment LaTeX Warning: Reference `xml_command_line' on page 287 undefined on input line 787. Underfull \hbox (badness 10000) in paragraph at lines 783--790 Overfull \hbox (3.01225pt too wide) in paragraph at lines 799--805 \OT1/cmr/m/n/10 The GraphVi-su-al-izer ([][]\OT1/cmtt/m/n/10 weka.gui.graphvisu alizer.GraphVisualizer[]\OT1/cmr/m/n/10 ) can save [287] Overfull \hbox (17.24684pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (11.99689pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] LaTeX Warning: Reference `xrff' on page 288 undefined on input line 838. ) [288] Chapter 19. (./other_resources.tex Underfull \hbox (badness 10000) in paragraph at lines 51--56 Underfull \hbox (badness 10000) in paragraph at lines 57--58 [289] Underfull \hbox (badness 10000) in paragraph at lines 65--68 LaTeX Warning: Reference `RunWeka.ini' on page 290 undefined on input line 76. Underfull \hbox (badness 10000) in paragraph at lines 91--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 106--108 Underfull \vbox (badness 1371) has occurred while \output is active [290] Overfull \hbox (5.99707pt too wide) in paragraph at lines 109--110 [][][]\OT1/cmtt/m/n/10 java weka.core.converters.CSVLoader filename.csv > filen ame.arff Underfull \hbox (badness 10000) in paragraph at lines 109--110 Underfull \hbox (badness 10000) in paragraph at lines 112--114 Underfull \hbox (badness 10000) in paragraph at lines 115--116 Underfull \hbox (badness 10000) in paragraph at lines 123--126 Underfull \hbox (badness 10000) in paragraph at lines 127--128 Overfull \hbox (16.19777pt too wide) in paragraph at lines 132--138 \OT1/cmr/m/n/10 Get-ting [][]\OT1/cmtt/m/n/10 java.lang.NoClassDefFoundError [] \OT1/cmr/m/n/10 ex-cep-tions? Most likely your \OT1/cmr/bx/n/10 CLASS- Underfull \hbox (badness 10000) in paragraph at lines 132--138 Underfull \hbox (badness 10000) in paragraph at lines 139--140 Underfull \hbox (badness 10000) in paragraph at lines 141--142 Underfull \hbox (badness 10000) in paragraph at lines 143--144 [291] Underfull \hbox (badness 10000) in paragraph at lines 145--148 Underfull \hbox (badness 10000) in paragraph at lines 149--150 LaTeX Warning: Reference `CLASSPATH' on page 292 undefined on input line 151. Underfull \hbox (badness 10000) in paragraph at lines 159--162 [292] Overfull \hbox (69.74638pt too wide) in paragraph at lines 236--236 []\OT1/cmtt/m/n/10 /usr/share/themes/Mist/gtk-2.0/gtkrc:48: Engine "mist" is un supported, ignoring[] Overfull \hbox (153.74565pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at weka.gui.explorer.PreprocessPanel.addPropertyChang eListener(PreprocessPanel.java:519)[] Overfull \hbox (95.99615pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installListene rs(SynthPanelUI.java:49)[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installUI(Synt hPanelUI.java:38)[] Underfull \hbox (badness 10000) in paragraph at lines 245--247 Underfull \hbox (badness 10000) in paragraph at lines 248--249 Underfull \hbox (badness 10000) in paragraph at lines 250--251 Underfull \hbox (badness 10000) in paragraph at lines 252--253 Underfull \hbox (badness 10000) in paragraph at lines 255--256 [293] Underfull \hbox (badness 10000) in paragraph at lines 257--258 LaTeX Warning: Reference `GUIChooserButNotExplorer' on page 294 undefined on in put line 260. Overfull \hbox (9.16362pt too wide) in paragraph at lines 264--265 []\OT1/cmr/m/n/10 Java VM op-tions ([][][][]) ) (./bibliography.tex [294] Underfull \hbox (badness 3514) in paragraph at lines 31--35 []\OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 -- A col-lec-tion of ex-am-p le classes, as part of Underfull \hbox (badness 5119) in paragraph at lines 31--35 \OT1/cmr/m/n/10 an ANT project, in-cluded in the WEKA snap-shots (avail-able Underfull \hbox (badness 10000) in paragraph at lines 31--35 \OT1/cmr/m/n/10 for down-load on the home-page) or di-rectly from sub-ver-sion Overfull \hbox (64.80228pt too wide) in paragraph at lines 31--35 [][][][] Underfull \vbox (badness 10000) has occurred while \output is active [295] Overfull \vbox (45.33775pt too high) has occurred while \output is active [296] Overfull \hbox (22.2144pt too wide) in paragraph at lines 103--106 []\OT1/cmr/m/n/9 Cozman. See [][][][] ) [297] (./manual.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `manual.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on manual.dvi (297 pages, 793484 bytes). Transcript written on manual.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/epsfig.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/dvips.def)))) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hdvips.def (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pdfmark.def (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))) (./hyphenation.tex) (./extensions.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-dvips.def) (./manual.aux) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./manual.out) (./manual.out) [1] Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 \OT1/cmr/m/n/10 This man-ual is li-censed un-der the GNU Gen-eral Pub-lic Li-ce nse Underfull \hbox (badness 4279) in paragraph at lines 42--49 \OT1/cmr/m/n/10 ver-sion 2. More in-for-ma-tion about this li-cense can be foun d at [2] (./manual.toc [3] [4] [5] [6] [7] [8]) [9] [10] [11] [12] Chapter 1. (./commandline.tex [13] Overfull \hbox (1.64569pt too wide) in paragraph at lines 46--46 []\OT1/cmtt/m/n/7 % Any relation to real weather is purely coincidental.[] Overfull \hbox (20.43309pt too wide) in paragraph at lines 39--54 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 56--70 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 72--87 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 89--104 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 106--120 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 122--141 [] Underfull \vbox (badness 1616) has occurred while \output is active [14] Overfull \hbox (16.8051pt too wide) in paragraph at lines 155--156 \OT1/cmtt/m/n/10 converters.CSVLoader\OT1/cmr/m/n/10 , which can be used to im- port C45 datasets and comma/tab- [15] Overfull \hbox (63.24817pt too wide) in paragraph at lines 166--167 \OT1/cmr/m/n/10 Any learn-ing al-go-rithm in WEKA is de-rived from the ab-strac t \OT1/cmtt/m/n/10 weka.classifiers.Classifier [16] [17] [18] Overfull \hbox (2.46945pt too wide) in paragraph at lines 375--376 []\OT1/cmtt/m/n/10 meta.ClassificationViaRegression -W functions.LinearRegressi on [19] Overfull \hbox (20.43309pt too wide) in paragraph at lines 391--418 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 420--435 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 437--472 [] Underfull \vbox (badness 10000) has occurred while \output is active [20] Overfull \hbox (20.43309pt too wide) in paragraph at lines 474--511 [] [21] Overfull \hbox (0.61818pt too wide) in paragraph at lines 522--523 []\OT1/cmr/m/n/10 The \OT1/cmr/m/it/10 F-Measure \OT1/cmr/m/n/10 is sim-ply 2*P re-ci-sion*Recall/(Precision+Recall), a com-bined Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 0 diaporthe-stem-canker 0.9999672587892333 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 1 diaporthe-stem-canker 0.9999992614503429 diaporthe-stem-can ker[] Overfull \hbox (6.6621pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 2 diaporthe-stem-canker 0.999998948559035 diaporthe-stem-cank er[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 3 diaporthe-stem-canker 0.9999998441238833 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 4 diaporthe-stem-canker 0.9999989997681132 diaporthe-stem-can ker[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 5 rhizoctonia-root-rot 0.9999999395928124 rhizoctonia-root-ro t[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 7 rhizoctonia-root-rot 0.9999994386283236 rhizoctonia-root-ro t[] Underfull \hbox (badness 1953) in paragraph at lines 551--552 \OT1/cmr/m/n/10 dicted class value, the con-fi- Overfull \hbox (48.88585pt too wide) in paragraph at lines 533--555 [] Overfull \hbox (48.88585pt too wide) in paragraph at lines 557--580 [] Overfull \hbox (26.73993pt too wide) in paragraph at lines 592--593 \OT1/cmr/m/n/10 Dividing by the num-ber of in-stances in the test set, i.e. \OT 1/cmtt/m/n/10 wc -l < soybean-test.preds [22] (./includes/learning_curves.tex Overfull \hbox (67.78633pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -c last -i ../$f -o $run/t_$f[] Overfull \hbox (78.94272pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -V -c last -i ../$f -o $run/t0$f[] Overfull \hbox (38.03596pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.Resample -S 0 -Z 83 -c last -i $run/t$nr$f -o $run/t$nrp1$f[] [23]) Overfull \hbox (82.66151pt too wide) in paragraph at lines 663--663 [] \OT1/cmtt/m/n/7 -M "weka.classifiers.meta.ClassificationViaRegression -W weka.classifiers.functions.LinearRegression -- -S 1" \[] ) [24] [25] [26] Chapter 2. (./launching.tex [27] Overfull \hbox (9.861pt too wide) in paragraph at lines 86--87 []\OT1/cmr/bx/n/10 Weka on Source-forge \OT1/cmr/m/n/10 WEKA's project home-pag e on Source-forge.net. [28]) [29] [30] Chapter 3. (./simplecli.tex [31] [32] Overfull \hbox (67.06445pt too wide) in paragraph at lines 92--94 \OT1/cmr/m/n/10 with a dot (Unix/Linux: \OT1/cmtt/m/n/10 ./some/other/path/file \OT1/cmr/m/n/10 ; Win-dows: .$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Some$\OMS/cmsy /m/n/10 n$\OT1/cmr/m/n/10 Other$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Path$\OMS/cm sy/m/n/10 n$\OT1/cmr/m/n/10 file). ) [33] [34] Chapter 4. (./explorer.tex [35] [36] [37] [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 298--308 [40] [41] [42] [43] [44] [45] [46] [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 657--666 [49] [50]) [51] [52] Chapter 5. (./experimenter.tex [53] [54] Underfull \vbox (badness 1082) has occurred while \output is active [55] [56] [57] [58] [59] Underfull \vbox (badness 10000) has occurred while \output is active [60] [61] [62] Underfull \vbox (badness 7704) has occurred while \output is active [63] [64] [65] Underfull \vbox (badness 10000) has occurred while \output is active [66] Overfull \hbox (74.99634pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme {weka.classifiers.rules.ZeroR,weka.cl assifiers.trees.J48}[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme_version_ID {48055541465867954,-217733 168393644444}[] [67] Overfull \hbox (1.49698pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Summary {'Number of leaves: 3\nSize of the tree: 5\n',[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 iris,1,weka.classifiers.rules.ZeroR,,48055541465867954,2005 1221.033,99,51,[] Overfull \hbox (69.74638pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 17,34,0,33.333333,66.666667,0,0,0.444444,0.471405,100,100,8 0.833088,80.833088,[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 0,1.584963,1.584963,0,0,0,0,1,17,1,34,0,0,0,0,0.333333,1,0. 5,0.5,0,0,?,?,?,?[] [68] [69] Underfull \vbox (badness 10000) has occurred while \output is active [70] Underfull \vbox (badness 10000) has occurred while \output is active [71] [72] [73] Overfull \hbox (38.24666pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 ClassifierSplitEvaluator: weka.classifiers.trees.J48 -C 0.25 -M 2(version[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Correctly Classified Instances 47 92. 1569 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 4 7. 8431 %[] [74] [75] [76] Overfull \hbox (0.2135pt too wide) in paragraph at lines 584--585 []\OT1/cmr/m/n/10 As with the other Re-sult-Pro-duc-ers, ad-di-tional schemes c an be de-fined. When Underfull \vbox (badness 10000) has occurred while \output is active [77] Underfull \vbox (badness 10000) has occurred while \output is active [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 605--610 Overfull \hbox (34.37631pt too wide) in paragraph at lines 613--614 [] [80] [81] Overfull \hbox (8.24261pt too wide) in paragraph at lines 656--657 [] [82] Overfull \hbox (17.30408pt too wide) in paragraph at lines 686--687 []\OT1/cmr/m/n/10 Additional jar archives, i.e., JDBC drivers, are stored in \O T1/cmtt/m/n/10 /home/johndoe/jars\OT1/cmr/m/n/10 . [83] Overfull \hbox (12.8892pt too wide) in paragraph at lines 737--738 []\OT1/cmr/m/n/10 Create a script, called \OT1/cmtt/m/n/10 /home/johndoe/remote []engine/startRemoteEngine\OT1/cmr/m/n/10 , Overfull \hbox (22.24724pt too wide) in paragraph at lines 745--745 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/hsqldb.jar:remoteEngine.jar \[] Overfull \hbox (16.99728pt too wide) in paragraph at lines 753--753 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/mysql.jar:remoteEngine.jar \[] [84] Overfull \hbox (75.70413pt too wide) in paragraph at lines 778--779 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:h sqldb:hsql://server[]name/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (11.41405pt too wide) in paragraph at lines 778--779 \OT1/cmr/m/n/9 server (e.g., \OT1/cmtt/m/n/9 jdbcURL=jdbc:hsqldb:hsql://dodo.co mpany.com/experiment\OT1/cmr/m/n/9 ). Overfull \hbox (89.44553pt too wide) in paragraph at lines 785--785 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/hsqldb.jar:remoteEngine.jar:/home/j ohndoe/weka/weka.jar \[] Overfull \hbox (70.97919pt too wide) in paragraph at lines 791--792 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:m ysql://server[]name:3306/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (84.72058pt too wide) in paragraph at lines 798--798 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/mysql.jar:remoteEngine.jar:/home/jo hndoe/weka/weka.jar \[] [85] Overfull \hbox (10.74715pt too wide) in paragraph at lines 832--833 []\OT1/cmtt/m/n/10 01:13:19: RemoteExperiment (//blabla.company.com/RemoteEngin e) Overfull \hbox (9.27715pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 java.sql.SQLException: Table already exists: EXPERIMENT[]INDEX Overfull \hbox (2.55719pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 LONGVARCHAR, Experiment[]setup LONGVARCHAR, Result[]table INT )] Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 (//blabla.company.com/RemoteEngine) (sub)experiment (datataset Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 vineyard.arff) failed : java.sql.SQLException: Table already Overfull \hbox (11.5871pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 Experiment[]index ( Experiment[]type LONGVARCHAR, Experiment[] setup [86] [87] [88] Underfull \vbox (badness 10000) has occurred while \output is active [89] [90] [91] Underfull \vbox (badness 10000) has occurred while \output is active [92] ) [93] [94] Chapter 6. (./knowledgeflow.tex [95] [96] [97] [98] Overfull \hbox (36.43697pt too wide) in paragraph at lines 133--135 []\OT1/cmr/m/it/10 ClassifierPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate the per-for-mance of batch trained/tested Overfull \hbox (35.54247pt too wide) in paragraph at lines 137--139 []\OT1/cmr/m/it/10 ClustererPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate t he per-for-mance of batch trained/tested [99] [100] [101] [102] Overfull \hbox (11.53027pt too wide) in paragraph at lines 268--269 [] [103] [104] Overfull \hbox (24.88557pt too wide) in paragraph at lines 359--360 [] [105] [106] Overfull \hbox (1.07347pt too wide) in paragraph at lines 435--453 \OT1/cmr/m/n/10 mech-a-nism. Plu-g-ins are in-stalled in a di-rec-tory called [ ][]\OT1/cmtt/m/n/10 .knowledgeFlow/plugins Overfull \hbox (69.74638pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ jar tvf /Users/mhall/.knowledgeFlow/plugins/ kettle/kettleKF.jar[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:20 NZDT 2008 weka/gui/beans/icons/Ke ttleInput.gif[] Overfull \hbox (85.49625pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:18 NZDT 2008 weka/gui/beans/icons/Ke ttleInput_animated.gif[] Overfull \hbox (17.24684pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 1839 Wed Feb 20 13:59:08 NZDT 2008 weka/gui/beans/KettleIn put.class[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 174 Tue Feb 19 15:27:24 NZDT 2008 weka/gui/beans/KettleIn putBeanInfo.class[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ more /Users/mhall/.knowledgeFlow/plugins/ket tle/Beans.props[] ) [107] [108] Chapter 7. (./arffviewer.tex [109] [110] [111] [112] ) [113] [114] Chapter 8. (./bayesnet.tex [115] [116] Underfull \vbox (badness 2103) has occurred while \output is active [117] Overfull \hbox (13.24905pt too wide) in paragraph at lines 180--185 \OT1/cmr/m/n/10 fer-ent from the ADTree clas-si-fier al-go-rithm from \OT1/cmtt /m/n/10 weka.classifiers.tree.ADTree\OT1/cmr/m/n/10 . [118] [119] [120] Underfull \hbox (badness 10000) in paragraph at lines 331--336 [121] Underfull \hbox (badness 10000) in paragraph at lines 352--356 Underfull \hbox (badness 10000) in paragraph at lines 361--376 [122] Overfull \hbox (38.44424pt too wide) has occurred while \output is active \OT1/cmr/m/sl/10 8.3. CONDITIONAL INDEPENDENCE TEST BASED STRUCTURE LEARNING \ OT1/cmr/m/n/10 123 [123] Overfull \hbox (106.49606pt too wide) in paragraph at lines 426--426 [] \OT1/cmtt/m/n/10 Rule 5: if no edges are directed then take a rand om one (first we can find)[] Underfull \hbox (badness 10000) in paragraph at lines 434--442 [124] Underfull \vbox (badness 1867) has occurred while \output is active [125] [126] [127] Overfull \hbox (28.27066pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Sets test file. If missing, a cross-validation will b e performed on the[] [128] Overfull \hbox (14.09583pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Retrieves the options from the XML-data instead of th e command line.[] [129] Overfull \hbox (57.99673pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [130] Overfull \hbox (42.24687pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [131] Overfull \hbox (42.24687pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [132] Overfull \hbox (42.24687pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 When determining whether an edge exists a search is performed[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 for a set Z that separates the nodes. MaxCardinalit y determines[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 the maximum size of the set Z. This greatly influen ces the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] [133] Overfull \hbox (31.74696pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [134] Overfull \hbox (42.24687pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [135] Overfull \hbox (42.24687pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 961--961 [] \OT1/cmtt/m/n/10 Name of file containing network structure in BIF fo rmat[] [136] [137] Overfull \hbox (641.9914pt too wide) in paragraph at lines 1043--1043 []\OT1/cmtt/m/n/10 Scheme: weka.classifiers.bayes.BayesNet -D -B iris.xml -Q weka.classifiers.bayes.net.search.local.K2 -- -P 2 -S BAYES -E weka.classif iers.bayes.net.estimate.SimpleEstimator -- -A 0.5[] Overfull \hbox (106.49606pt too wide) in paragraph at lines 1061--1061 []\OT1/cmtt/m/n/10 Relation: iris-weka.filters.unsupervised.attribute.Discr etize-B2-M-1.0-Rfirst-last[] [138] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Correctly Classified Instances 116 77. 3333 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 34 22. 6667 %[] [139] [140] Underfull \hbox (badness 10000) in paragraph at lines 1181--1191 [141] Overfull \hbox (109.99007pt too wide) in paragraph at lines 1199--1200 [] Underfull \vbox (badness 4569) has occurred while \output is active [142] Overfull \hbox (31.52597pt too wide) in paragraph at lines 1232--1244 \OT1/cmr/m/n/10 vari-ables are dis-cretized us-ing the \OT1/cmtt/m/n/10 weka.fi lters.supervised.attribute.Discretize Underfull \vbox (badness 10000) has occurred while \output is active [143] [144] Underfull \hbox (badness 10000) in paragraph at lines 1298--1308 Overfull \hbox (5.15332pt too wide) in paragraph at lines 1316--1319 []\OT1/cmr/m/n/10 The Gen-er-ate Net-work menu al-lows gen-er-a-tion of a com-p lete ran-dom Bayesian [145] [146] Overfull \hbox (17.96149pt too wide) in paragraph at lines 1375--1376 [] Underfull \vbox (badness 10000) has occurred while \output is active [147] Overfull \hbox (11.45515pt too wide) in paragraph at lines 1409--1410 [] [148] [149] [150] Underfull \vbox (badness 1675) has occurred while \output is active [151] [152] [153] Overfull \hbox (76.10909pt too wide) in paragraph at lines 1570--1576 []\OT1/cmr/m/n/10 Create a class that de-rives from \OT1/cmtt/m/n/10 weka.class ifiers.bayes.net.search.SearchAlgorithm\OT1/cmr/m/n/10 . Overfull \hbox (6.74959pt too wide) in paragraph at lines 1570--1576 \OT1/cmr/m/n/10 validation based, you prob-a-bly want to de-rive from \OT1/cmtt /m/n/10 ScoreSearchAlgorithm\OT1/cmr/m/n/10 , Overfull \hbox (56.55356pt too wide) in paragraph at lines 1570--1576 \OT1/cmtt/m/n/10 CISearchAlgorithm \OT1/cmr/m/n/10 or \OT1/cmtt/m/n/10 CVSearch Algorithm \OT1/cmr/m/n/10 in-stead of de-riv-ing from \OT1/cmtt/m/n/10 SearchAl gorithm Overfull \hbox (29.2748pt too wide) in paragraph at lines 1577--1582 \OT1/cmtt/m/n/10 public void buildStructure(BayesNet bayesNet, Instances instan ces)\OT1/cmr/m/n/10 . Overfull \hbox (6.05424pt too wide) in paragraph at lines 1577--1582 \OT1/cmr/m/n/10 You can ac-cess the par-entsets us-ing \OT1/cmtt/m/n/10 bayesNe t.getParentSet(iAttribute) Overfull \hbox (10.74715pt too wide) in paragraph at lines 1583--1587 \OT1/cmtt/m/n/10 bayesNet.getParentSet(iAttribute).AddParent(iParent, instances ) Overfull \hbox (36.44255pt too wide) in paragraph at lines 1588--1596 []\OT1/cmr/m/n/10 Alternatively, im-ple-ment \OT1/cmtt/m/n/10 public void searc h(BayesNet bayesNet, Instances Overfull \hbox (2.57175pt too wide) in paragraph at lines 1617--1621 \OT1/cmtt/m/n/10 weka.classifiers.bayes.net.estimate.BayesNetEstimator\OT1/cmr/ m/n/10 . Let's say Overfull \hbox (29.2748pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public void updateClassifier(BayesNet bayesNet, Instance insta nce)\OT1/cmr/m/n/10 , Overfull \hbox (31.74696pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public double[] distributionForInstance(BayesNet bayesNet, Ins tance [154] Overfull \hbox (7.02576pt too wide) in paragraph at lines 1644--1648 \OT1/cmr/m/n/10 Use the class \OT1/cmtt/m/n/10 weka.filters.unsupervised.attrib ute.Discretize \OT1/cmr/m/n/10 to dis-cretize Overfull \hbox (27.74675pt too wide) in paragraph at lines 1644--1648 \OT1/cmtt/m/n/10 java weka.filters.unsupervised.attribute.Discretize -B 3 -i in file.arff Overfull \hbox (1.49698pt too wide) in paragraph at lines 1655--1659 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -B -N 10 -A 9 -C Overfull \hbox (1.49698pt too wide) in paragraph at lines 1661--1665 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -N 15 -A 20 -C 3 Overfull \hbox (22.4968pt too wide) in paragraph at lines 1667--1671 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -F alarm.xml -M 1000 [155] [156] Overfull \hbox (5.66734pt too wide) in paragraph at lines 1731--1735 []\OT1/cmr/m/n/10 Only leave-one-out, k-fold and cu-mu-la-tive cross-validation are im-ple-mented. Overfull \hbox (8.08392pt too wide) in paragraph at lines 1731--1735 \OT1/cmr/m/n/10 These im-ple-men-ta-tions can be made more ef-fi-cient and othe r cross-validation ) [157] [158] [159] [160] Chapter 9. (./arff.tex Overfull \hbox (6.74693pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 % (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.na sa.gov)[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 @ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris- virginica}[] [161] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [162] Overfull \hbox (2.27603pt too wide) in paragraph at lines 116--117 \OT1/cmr/m/n/10 pos-si-ble val-ues: $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 nomina l-name1$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n /10 nominal-name2$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT 1/cmtt/m/n/10 nominal-name3$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , [163] [164] [165]) [166] Chapter 10. (./xrff.tex [167] Overfull \hbox (80.24629pt too wide) in paragraph at lines 127--127 [] \OT1/cmtt/m/n/10 [] [168] [169] [170]) [171] [172] Chapter 11. (./converters.tex [173] Overfull \hbox (10.74715pt too wide) in paragraph at lines 70--70 [] \OT1/cmtt/m/n/10 java weka.core.converters.CSVSaver -i iris.arff -o iris .csv[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 99--99 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseLoader -Q "select * fro m employee"[] [174] Overfull \hbox (15.9971pt too wide) in paragraph at lines 104--104 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseSaver -i iris.arff -T iris[] ) [175] [176] Chapter 12. (./stemmers.tex Overfull \hbox (68.33246pt too wide) in paragraph at lines 29--30 \OT1/cmr/m/n/10 Weka con-tains a wrap-per class for the Snow-ball (home-page: [ ][][][]) [177] Overfull \hbox (46.33209pt too wide) in paragraph at lines 49--50 []\OT1/cmr/m/n/10 within the String-ToWord-Vec-tor (pack-age \OT1/cmtt/m/n/10 w eka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ) Overfull \hbox (4.85867pt too wide) in paragraph at lines 73--74 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 GenericObjectEditor.props\OT1/cmr/m/n/10 / \OT1/cmtt/m/n/10 GenericPropertiesCreator.props \OT1/cmr/m/n/10 file ) [178] Chapter 13. (./databases.tex Overfull \hbox (9.77429pt too wide) in paragraph at lines 37--38 []\OT1/cmtt/m/n/10 DatabaseUtils.props.mssqlserver2005 \OT1/cmr/m/n/10 - MS SQL Server 2005 ($\OML/cmm/m/it/10 >\OT1/cmr/m/n/10 =$3.4.11, Overfull \hbox (9.10817pt too wide) in paragraph at lines 39--41 []\OT1/cmtt/m/n/10 DatabaseUtils.props.odbc \OT1/cmr/m/n/10 - ODBC ac-cess via Sun's ODBC/JDBC bridge, Underfull \hbox (badness 10000) in paragraph at lines 46--47 Underfull \hbox (badness 10000) in paragraph at lines 48--49 [179] [180] Overfull \hbox (89.10794pt too wide) in paragraph at lines 103--108 \OT1/cmtt/m/n/10 jdbc:postgresql://server.my.domain:5432/MyDatabase?user=$\OML/ cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 &passwor d=$\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$ Underfull \vbox (badness 3679) has occurred while \output is active [181] [182] Overfull \hbox (27.9972pt too wide) in paragraph at lines 183--185 [][][][] Overfull \hbox (0.8047pt too wide) in paragraph at lines 201--202 \OT1/cmr/m/n/10 com-mand \OT1/cmtt/m/n/10 java weka.core.SystemInfo \OT1/cmr/m/ n/10 and check whether the prop- ) [183] [184] Chapter 14. (./windows_databases.tex [185] [186]) [187] [188] [189] [190] Chapter 15. (./research.tex Overfull \hbox (31.02701pt too wide) in paragraph at lines 32--33 \OT1/cmr/m/n/10 ter-face it is now easy to ex-tract all the pa-per ref-er-ences via \OT1/cmtt/m/n/10 weka.core.ClassDiscovery [191] (./includes/get_wekatechinfo.tex [192] Overfull \hbox (90.0991pt too wide) in paragraph at lines 124--124 []\OT1/cmtt/m/n/7 TECHINFOHANDLERS=`$JAVA weka.core.ClassDiscovery $TECHINFOHAN DLER $PACKAGES | grep "\. weka" | sed s/".*weka"/weka/g`[] )) [193] [194] Chapter 16. (./using_api.tex Underfull \hbox (badness 10000) in paragraph at lines 35--40 [195] Overfull \hbox (3.8326pt too wide) in paragraph at lines 104--113 \OT1/cmr/m/n/10 support-vector ma-chine clas-si-fier \OT1/cmr/m/it/10 SMO \OT1/ cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.classifiers.functions\OT1/cmr/m/n/10 ) [196] Overfull \hbox (8.05441pt too wide) in paragraph at lines 125--130 \OT1/cmr/m/n/10 method, it is best to have a look at the \OT1/cmtt/m/n/10 setOp tions(String[]) \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 getOptions() Overfull \hbox (6.08145pt too wide) in paragraph at lines 140--148 []\OT1/cmr/m/n/10 A \OT1/cmtt/m/n/10 SelectedTag \OT1/cmr/m/n/10 gets con-struc ted us-ing the ar-ray of all pos-si-ble \OT1/cmtt/m/n/10 weka.core.Tag Overfull \hbox (11.99689pt too wide) in paragraph at lines 156--156 [] \OT1/cmtt/m/n/10 setEvaluation(new SelectedTag(EVALUATION_CC, TAGS_EVALU ATION));[] [197] Overfull \hbox (1.93398pt too wide) in paragraph at lines 178--183 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 attribute(int) \OT1/cmr/m/n/10 method. Thi s method re-turns \OT1/cmtt/m/n/10 weka.core.Attribute Overfull \hbox (27.33139pt too wide) in paragraph at lines 203--206 []\OT1/cmr/m/n/10 The \OT1/cmtt/m/n/10 DataSource \OT1/cmr/m/n/10 class (in-ner class of the \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils [198] Underfull \hbox (badness 10000) in paragraph at lines 246--249 Overfull \hbox (3.25064pt too wide) in paragraph at lines 299--301 \OT1/cmr/m/n/10 loaded into mem-ory and then pro-vided row-by-row (``pseudo-inc remental''). [199] [200] Overfull \hbox (21.26906pt too wide) in paragraph at lines 318--321 \OT1/cmr/m/n/10 The class \OT1/cmtt/m/n/10 wekaexamples.core.CreateInstances \O T1/cmr/m/n/10 of the \OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 collectio n[[]] Overfull \hbox (41.44293pt too wide) in paragraph at lines 332--335 \OT1/cmr/m/n/10 For all of the dif-fer-ent at-tribute types, WEKA uses the same class, \OT1/cmtt/m/n/10 weka.core.Attribute\OT1/cmr/m/n/10 , Overfull \hbox (0.24724pt too wide) in paragraph at lines 351--351 []\OT1/cmtt/m/n/10 Attribute date = new Attribute("name_of_attr", "yyyy-MM-dd" );[] Overfull \hbox (36.99692pt too wide) in paragraph at lines 372--372 []\OT1/cmtt/m/n/10 Attribute string = new Attribute("name_of_attr", (FastVecto r) null);[] Underfull \vbox (badness 10000) has occurred while \output is active [201] Overfull \vbox (28.493pt too high) has occurred while \output is active [202] Overfull \hbox (21.24706pt too wide) in paragraph at lines 390--390 []\OT1/cmtt/m/n/10 Attribute relational = new Attribute("name_of_attr", rel_st ruct);[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 408--408 [] \OT1/cmtt/m/n/10 Instances dataset = new Instances("Test-dataset", attribu tes, 0);[] Overfull \hbox (9.12917pt too wide) in paragraph at lines 418--421 \OT1/cmr/m/n/10 to it, row by row. There are ba-si-cally two con-struc-tors of the \OT1/cmtt/m/n/10 weka.core.Instance Overfull \hbox (12.8311pt too wide) in paragraph at lines 422--426 []\OT1/cmtt/m/n/10 Instance(double weight, double[] attValues) \OT1/cmr/m/n/10 -- gen-er-ates an \OT1/cmtt/m/n/10 Instance Overfull \vbox (34.59024pt too high) has occurred while \output is active [203] Overfull \hbox (21.24706pt too wide) in paragraph at lines 468--468 []\OT1/cmtt/m/n/10 values[3] = data.attribute(3).addStringValue("This is a str ing");[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 480--480 []\OT1/cmtt/m/n/10 Instances dataRel = new Instances(data.attribute(4).relatio n(),0);[] [204] Overfull \hbox (24.165pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 Simply gen-er-at-ing an ARFF file is achieved us-ing the static \OT1/cmtt/m/n/10 DataGenerator.makeData Overfull \hbox (28.96251pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 method. In or-der to write to a file, the gen-er-a-tor needs to have a \OT1/cmtt/m/n/10 java.io.PrintWriter Overfull \hbox (6.74693pt too wide) in paragraph at lines 520--520 [] \OT1/cmtt/m/n/10 new java.io.BufferedWriter(new java.io.FileWriter("rdg1.ar ff")));[] [205] Overfull \hbox (20.5538pt too wide) in paragraph at lines 567--570 []\OT1/cmr/m/n/10 Using the \OT1/cmtt/m/n/10 Randomize \OT1/cmr/m/n/10 fil-ter (pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.instance\OT1/cmr/m/n/10 ). [206] [207] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 remove.setInputFormat(data); // inform filter abo ut dataset[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 // **AFTER** setting options[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 Instances newData = Filter.useFilter(data, remove); // ap ply filter[] Overfull \hbox (18.08133pt too wide) in paragraph at lines 672--677 \OT1/cmr/m/n/10 A com-mon trap to fall into is set-ting op-tions \OT1/cmr/bx/n/ 10 af-ter \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 setInputFormat(Instances) Overfull \hbox (5.97029pt too wide) in paragraph at lines 689--693 \OT1/cmr/m/n/10 with the \OT1/cmtt/m/n/10 Standardize \OT1/cmr/m/n/10 fil-ter ( pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ): [208] Overfull \hbox (17.5531pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 like \OT1/cmtt/m/n/10 FilteredClassifier \OT1/cmr/m/n/10 (pack- age \OT1/cmtt/m/n/10 weka.classifiers.meta\OT1/cmr/m/n/10 ), \OT1/cmtt/m/n/10 F ilteredClusterer Overfull \hbox (12.72011pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.clusterers\OT1/cmr/m/n/10 ), \O T1/cmtt/m/n/10 FilteredAssociator \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 we ka.associations\OT1/cmr/m/n/10 ) Overfull \hbox (27.16393pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 FilteredAttributeEval\OT1/cmr/m/n/10 /\OT1 /cmtt/m/n/10 FilteredSubsetEval \OT1/cmr/m/n/10 (in \OT1/cmtt/m/n/10 weka.attri buteSelection\OT1/cmr/m/n/10 ). [209] Overfull \hbox (20.1095pt too wide) in paragraph at lines 817--824 \OT1/cmr/m/n/10 All in-cre-men-tal clas-si-fiers in WEKA im-ple-ment the in-ter -face \OT1/cmtt/m/n/10 UpdateableClassifier Overfull \hbox (5.91695pt too wide) in paragraph at lines 831--833 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row, by call-ing the \OT1/cmtt/m/n/10 updateClassifier(Instance) [210] [211] Overfull \hbox (21.05566pt too wide) in paragraph at lines 872--874 \OT1/cmr/m/n/10 The eval-u-a-tion step, in-clud-ing col-lec-tion of statis-tics , is per-formed by the \OT1/cmtt/m/n/10 Evaluation [212] Overfull \hbox (11.99689pt too wide) in paragraph at lines 910--910 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 940--940 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] [213] Overfull \hbox (11.55396pt too wide) in paragraph at lines 950--952 []\OT1/cmtt/m/n/10 toClassDetailsString \OT1/cmr/m/n/10 -- out-puts TP/FP rates , pre-ci-sion, re-call, F-measure, Overfull \hbox (0.47084pt too wide) in paragraph at lines 952--954 []\OT1/cmtt/m/n/10 toCumulativeMarginDistributionString \OT1/cmr/m/n/10 -- out- puts the cu-mu-la-tive mar- [214] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 Instances unlabeled = DataSource.read("/some/where/unlabe led.arff");[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 double clsLabel = tree.classifyInstance(unlabeled.insta nce(i));[] Overfull \hbox (6.74693pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 double[] dist = cls.distributionForInstance(test.instan ce(i));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.instance(i).toString(test.classIn dex()) + " - ");[] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.classAttribute().value((int) pred ) + " - ");[] [215] Overfull \hbox (12.30984pt too wide) in paragraph at lines 1083--1087 []\OT1/cmr/m/it/10 build the model \OT1/cmr/m/n/10 with train-ing data -- call- ing the \OT1/cmtt/m/n/10 buildClusterer(Instances) Overfull \hbox (0.94284pt too wide) in paragraph at lines 1104--1108 \OT1/cmr/m/n/10 Incremental clus-ter-ers in WEKA im-ple-ment the in-ter-face \O T1/cmtt/m/n/10 UpdateableClusterer Overfull \hbox (13.7781pt too wide) in paragraph at lines 1112--1114 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row by call-ing the the \OT1/cmtt/m/n/10 updateClusterer(Instance) Underfull \vbox (badness 10000) has occurred while \output is active [216] Overfull \vbox (79.67348pt too high) has occurred while \output is active [217] [218] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1160--1160 [] \OT1/cmtt/m/n/10 System.out.println(ClusterEvaluation.evaluateClusterer(new EM(), options));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 DensityBasedClusterer clusterer = new ... // the clust erer to evaluate[] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 new Random(1)); // and rando m number generator[] [219] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 filter.setAttributeIndices("" + (data.classIndex() + 1) );[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 Instances dataClusterer = Filter.useFilter(data, filter );[] [220] Overfull \hbox (3.69315pt too wide) in paragraph at lines 1247--1249 []\OT1/cmtt/m/n/10 clusterInstance(Instance) \OT1/cmr/m/n/10 -- de-ter-mines th e clus-ter the \OT1/cmtt/m/n/10 Instance \OT1/cmr/m/n/10 would Overfull \hbox (6.74693pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 int cluster = clusterer.clusterInstance(dataset2.instan ce(i));[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 double[] dist = clusterer.distributionForInstance(datas et2.instance(i));[] [221] Underfull \hbox (badness 10000) in paragraph at lines 1285--1290 Overfull \hbox (3.35565pt too wide) in paragraph at lines 1293--1298 []\OT1/cmr/m/it/10 single at-tribute eval-u-a-tors \OT1/cmr/m/n/10 -- per-form eval-u-a-tions on sin-gle at-tributes. These [222] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 AttributeSelectedClassifier classifier = new AttributeSel ectedClassifier();[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 evaluation.crossValidateModel(classifier, data, 10, new R andom(1));[] [223] Overfull \hbox (27.4348pt too wide) in paragraph at lines 1383--1388 \OT1/cmr/m/n/10 train-ing a clas-si-fier, then the fil-ter ap-proach is the rig ht one. The \OT1/cmtt/m/n/10 AttributeSelection [224] [225] Overfull \hbox (50.86061pt too wide) in paragraph at lines 1465--1470 \OT1/cmr/m/n/10 ing the data or use an ex-plicit con-verter (all savers are lo- cated in the \OT1/cmtt/m/n/10 weka.core.converters Overfull \hbox (22.94261pt too wide) in paragraph at lines 1471--1474 []\OT1/cmr/m/n/10 Use the \OT1/cmtt/m/n/10 DataSink \OT1/cmr/m/n/10 class (in-n er class of \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils\OT1/cmr/m/n/10 ), [226] [227] Overfull \hbox (34.02615pt too wide) in paragraph at lines 1575--1578 \OT1/cmr/m/n/10 tions, us-ing the \OT1/cmtt/m/n/10 ThresholdCurve \OT1/cmr/m/n/ 10 class (pack-age \OT1/cmtt/m/n/10 weka.classifiers.evaluation\OT1/cmr/m/n/10 ). Overfull \hbox (30.6928pt too wide) in paragraph at lines 1580--1583 \OT1/cmr/m/n/10 in-stance of the \OT1/cmtt/m/n/10 ThresholdVisualizePanel \OT1/ cmr/m/n/10 class (pack-age \OT1/cmtt/m/n/10 weka.gui.visualize\OT1/cmr/m/n/10 ) . Overfull \hbox (5.4972pt too wide) in paragraph at lines 1594--1594 []\OT1/cmtt/m/n/10 Instances curve = tc.getCurve(eval.predictions(), classInde x);[] Overfull \hbox (15.9971pt too wide) in paragraph at lines 1610--1610 [] \OT1/cmtt/m/n/10 Utils.doubleToString(ThresholdCurve.getROCArea(curve),4)+ ")");[] [228] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1665--1665 [] \OT1/cmtt/m/n/10 JFrame jf = new JFrame("Weka Classifier Tree Visualizer: J48");[] [229] [230] [231] Overfull \hbox (17.24684pt too wide) in paragraph at lines 1778--1778 [] \OT1/cmtt/m/n/10 Object o[] = SerializationHelper.readAll("/some/where/j48 .model");[] ) [232] Chapter 17. (./extending.tex [233] (./extending_classifier.tex Underfull \vbox (badness 10000) has occurred while \output is active [234] Overfull \vbox (64.17354pt too high) has occurred while \output is active [235] [236] [237] Overfull \hbox (6.74693pt too wide) in paragraph at lines 192--192 [] \OT1/cmtt/m/n/10 result.addAll(Arrays.asList(super.getOptions())); // sup erclass[] Overfull \hbox (30.47186pt too wide) in paragraph at lines 227--231 \OT1/cmr/m/n/10 re-turns the class prob-a-bil-i-ties ar-ray of the pre-dic-tion for the given \OT1/cmtt/m/n/10 weka.core.Instance [238] Overfull \hbox (42.88777pt too wide) in paragraph at lines 232--243 \OT1/cmr/m/n/10 bel in-dex based on the prob-a-bil-i-ties ar-ray that the \OT1/ cmtt/m/n/10 distributionForInstance(Instance) [239] [240] [241] Underfull \hbox (badness 10000) in paragraph at lines 360--374 Overfull \hbox (0.55939pt too wide) in paragraph at lines 390--397 []\OT1/cmr/m/it/10 multi-instance clas-si-fiers \OT1/cmr/m/n/10 -- in or-der to sig-nal that the spe-cial multi-instance Overfull \hbox (5.27605pt too wide) in paragraph at lines 390--397 \OT1/cmr/m/n/10 instance, \OT1/cmtt/m/n/10 weka.core.MultiInstanceCapabilitiesH andler\OT1/cmr/m/n/10 , which re-turns [242] Overfull \hbox (5.08153pt too wide) in paragraph at lines 441--446 \OT1/cmr/m/n/10 in case of de-scen-dants of the \OT1/cmtt/m/n/10 weka.classifie r.MultipleClassifiersCombiner\OT1/cmr/m/n/10 , Overfull \hbox (14.09583pt too wide) in paragraph at lines 461--461 [] \OT1/cmtt/m/n/9 result.enable(Capability.NOMINAL_CLASS); // only nominal classes allowed[] [243] Overfull \vbox (104.0pt too high) has occurred while \output is active [244] [245] Overfull \hbox (17.24684pt too wide) in paragraph at lines 603--603 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (59.46141pt too wide) in paragraph at lines 640--645 \OT1/cmr/m/n/10 class. The su-per-class for clas-si-fier unit tests is \OT1/cmt t/m/n/10 weka.classifiers.AbstractClassifierTest\OT1/cmr/m/n/10 . ) [246] (./extending_filter.tex Overfull \hbox (26.02608pt too wide) in paragraph at lines 63--67 \OT1/cmtt/m/n/10 weka.filters.Filter \OT1/cmr/m/n/10 su-per-class does not im-p le-ment the \OT1/cmtt/m/n/10 weka.core.OptionHandler [247] [248] Overfull \hbox (34.38815pt too wide) in paragraph at lines 125--132 \OT1/cmr/m/n/10 de-ter-mine what the out-put for-mat will be (and set if via \O T1/cmtt/m/n/10 setOutputFormat(Instances)\OT1/cmr/m/n/10 ) [249] (./includes/BatchFilter.tex) [250] (./includes/BatchFilter2.tex) [251] (./includes/BatchFilter3.tex) Overfull \vbox (68.45831pt too high) has occurred while \output is active [252] (./includes/StreamFilter.tex) [253] [254] (./includes/SimpleBatch.tex Overfull \hbox (33.25543pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 return "A simple batch filter that adds an additional a ttribute 'blah' at the end "[] Overfull \hbox (7.75507pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [255] [256] (./includes/SimpleStream.tex Overfull \hbox (7.75507pt too wide) in paragraph at lines 50--50 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [257] Overfull \hbox (15.32312pt too wide) in paragraph at lines 319--322 \OT1/cmr/m/n/10 bu-tions into ac-count. Must im-ple-ment the \OT1/cmtt/m/n/10 w eka.filters.SupervisedFilter Overfull \hbox (0.93573pt too wide) in paragraph at lines 336--338 \OT1/cmr/m/n/10 The Javadoc gen-er-a-tion works the same as with clas-si-fiers. See sec-tion ``Javadoc'' [258] Overfull \hbox (17.24684pt too wide) in paragraph at lines 360--360 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (77.71982pt too wide) in paragraph at lines 386--390 []\OT1/cmr/m/n/10 Here is an ex-am-ple call for \OT1/cmtt/m/n/10 weka.filters.u nsupervised.attribute.ReplaceMissingValues ) [259] (./extending_other_algorithms.tex Overfull \hbox (1.7496pt too wide) in paragraph at lines 36--39 \OT1/cmr/m/n/10 like the \OT1/cmtt/m/n/10 FilteredClusterer \OT1/cmr/m/n/10 tha t fil-ters the data on-the-fly for the base-clusterer. Underfull \hbox (badness 10000) in paragraph at lines 36--39 Overfull \hbox (56.46068pt too wide) in paragraph at lines 50--55 \OT1/cmr/m/n/10 one way or an-other. \OT1/cmtt/m/n/10 RandomizableClusterer\OT1 /cmr/m/n/10 , \OT1/cmtt/m/n/10 RandomizableDensityBasedClusterer [260] Overfull \hbox (3.24855pt too wide) in paragraph at lines 116--118 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.c lusterers.AbstractClustererTest [261] Overfull \hbox (0.3597pt too wide) in paragraph at lines 137--140 \OT1/cmr/m/n/10 The an-ces-tor for all eval-u-a-tors is the \OT1/cmtt/m/n/10 we ka.attributeSelection.ASEvaluation Underfull \hbox (badness 10000) in paragraph at lines 137--140 [262] Overfull \hbox (10.55435pt too wide) in paragraph at lines 189--192 \OT1/cmr/m/n/10 The an-ces-tor for all search al-go-rithms is the \OT1/cmtt/m/n /10 weka.attributeSelection.ASSearch Underfull \hbox (badness 10000) in paragraph at lines 189--192 Overfull \hbox (45.24818pt too wide) in paragraph at lines 216--220 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ttributeSelection.AbstractEvaluatorTest [263] Overfull \hbox (5.08264pt too wide) in paragraph at lines 228--235 \OT1/cmr/m/n/10 can also im-ple-ment a meta-associator, de-rived from \OT1/cmtt /m/n/10 SingleAssociatorEnhancer\OT1/cmr/m/n/10 . Overfull \hbox (1.49698pt too wide) in paragraph at lines 258--258 [] \OT1/cmtt/m/n/10 public void buildAssociations(Instances data) throws Excep tion {[] [264] Overfull \hbox (1.49698pt too wide) in paragraph at lines 283--283 [] \OT1/cmtt/m/n/10 AbstractAssociator.runAssociator(new FunkyAssociator(), args);[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 290--290 [] \OT1/cmtt/m/n/10 weka.associations.CheckAssociator -W classname [further op tions][] ) Overfull \hbox (18.99841pt too wide) in paragraph at lines 291--62 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ssociations.AbstractAssociatorTest [265] (./extending_explorer.tex Overfull \hbox (11.74733pt too wide) in paragraph at lines 41--44 []\OT1/cmtt/m/n/10 weka.gui.explorer.Explorer.CapabilitiesFilterChangeListener Overfull \hbox (18.02759pt too wide) in paragraph at lines 45--47 []\OT1/cmr/m/n/10 adding the class-name of your class to the Tabs prop-erty in the \OT1/cmtt/m/n/10 Explorer.props Overfull \hbox (68.49664pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "SQL"; // what's displayed as tab-title, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "Retrieving data from databases"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] [266] Overfull \vbox (91.59024pt too high) has occurred while \output is active [267] Overfull \hbox (31.74696pt too wide) in paragraph at lines 138--138 [] \OT1/cmtt/m/n/10 /** the Load button - makes the data available in the Exp lorer */[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 Instances data = query.retrieveInstances(m_Viewer.g etQuery());[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \vbox (69.0pt too high) has occurred while \output is active [268] [269] Overfull \hbox (68.49664pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "DataGeneration"; // what's displayed as tab-ti tle, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "Generating artificial datasets"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] Overfull \vbox (92.50687pt too high) has occurred while \output is active [270] Overfull \hbox (89.49646pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected GenericObjectEditor m_GeneratorEditor = new Gen ericObjectEditor();[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected JButton m_ButtonGenerate = new JButton("Generat e");[] Overfull \hbox (84.2465pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator generator = (DataGenerator) m_Generator Editor.getValue();[] Overfull \hbox (78.99655pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 String cname = generator.getClass().getName().replace All(".*\\.", "");[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 cmd += " "+Utils.joinOptions(((OptionHandler)genera tor).getOptions());[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator.makeData(generator, generator.getOpti ons());[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (48.0pt too high) has occurred while \output is active [271] Overfull \hbox (84.2465pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 Instances data = new Instances(new StringReader(m_O utput.getText()));[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (81.85202pt too high) has occurred while \output is active [272] Overfull \vbox (57.81944pt too high) has occurred while \output is active [273] Overfull \hbox (34.60944pt too wide) in paragraph at lines 418--422 \OT1/cmr/m/n/10 home di-rec-tory) un-der the key \OT1/cmtt/m/n/10 weka.gui.visu alize.plugins.VisualizePlugin\OT1/cmr/m/n/10 . [274] [275] )) [276] Chapter 18. (./technical_documentation.tex Underfull \hbox (badness 10000) in paragraph at lines 21--22 [277] Underfull \hbox (badness 10000) in paragraph at lines 81--82 Underfull \hbox (badness 10000) in paragraph at lines 83--84 Underfull \hbox (badness 10000) in paragraph at lines 85--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 96--97 Underfull \hbox (badness 10000) in paragraph at lines 98--99 Underfull \hbox (badness 10000) in paragraph at lines 104--105 Underfull \hbox (badness 10000) in paragraph at lines 106--107 Overfull \hbox (95.24629pt too wide) in paragraph at lines 114--115 [][][]\OT1/cmtt/m/n/10 export CLASSPATH=$CLASSPATH:/home/johndoe/jars/mysql-con nector-java-5.1.7-bin.jar Overfull \hbox (95.24629pt too wide) in paragraph at lines 120--121 [][][]\OT1/cmtt/m/n/10 setenv CLASSPATH $CLASSPATH:/home/johndoe/jars/mysql-con nector-java-5.1.7-bin.jar [278] Underfull \hbox (badness 10000) in paragraph at lines 141--143 Underfull \hbox (badness 10000) in paragraph at lines 146--147 Underfull \hbox (badness 10000) in paragraph at lines 148--149 Underfull \hbox (badness 10000) in paragraph at lines 150--151 Underfull \hbox (badness 10000) in paragraph at lines 152--154 Underfull \hbox (badness 10000) in paragraph at lines 163--165 Underfull \hbox (badness 10000) in paragraph at lines 170--176 [279] Overfull \hbox (7.98488pt too wide) in paragraph at lines 177--178 \OT1/cmr/m/n/10 Here's once again how you start the Weka Main-GUI \OT1/cmr/bx/n /10 with \OT1/cmr/m/n/10 your cur-rent [][]\OT1/cmtt/m/n/10 CLASSPATH Overfull \hbox (0.24724pt too wide) in paragraph at lines 181--182 [][]\OT1/cmtt/m/n/10 java -Xmx128m -classpath "%CLASSPATH%;weka.jar" weka.gui.M ain Underfull \hbox (badness 10000) in paragraph at lines 187--188 Underfull \hbox (badness 10000) in paragraph at lines 189--190 Underfull \hbox (badness 10000) in paragraph at lines 210--211 Underfull \hbox (badness 10000) in paragraph at lines 212--213 Underfull \hbox (badness 10000) in paragraph at lines 214--215 Overfull \hbox (37.9968pt too wide) in paragraph at lines 216--217 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 216--217 Underfull \hbox (badness 10000) in paragraph at lines 219--220 [280] Underfull \hbox (badness 10000) in paragraph at lines 223--224 Overfull \hbox (43.24675pt too wide) in paragraph at lines 225--226 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 245--246 [281] Overfull \hbox (14.55481pt too wide) in paragraph at lines 265--274 \OT1/cmr/m/n/10 run-time (rather than us-ing only those spec-i-fied in the [][] \OT1/cmtt/m/n/10 GenericObjectEditor.props Underfull \hbox (badness 10000) in paragraph at lines 300--306 [282] Overfull \vbox (24.59024pt too high) has occurred while \output is active [283] Underfull \hbox (badness 10000) in paragraph at lines 375--380 Underfull \hbox (badness 10000) in paragraph at lines 381--382 Underfull \hbox (badness 10000) in paragraph at lines 383--384 Underfull \hbox (badness 10000) in paragraph at lines 385--386 Overfull \hbox (3.66528pt too wide) in paragraph at lines 387--390 \OT1/cmr/m/n/10 Where the [][]\OT1/cmtt/m/n/10 []\OT1/cmr/m/n/10 cor-re-s ponds to a key in the [][]\OT1/cmtt/m/n/10 GenericPropertiesCreator.props Overfull \hbox (64.49643pt too wide) in paragraph at lines 412--412 []\OT1/cmtt/m/n/10 # exclude all ResultListeners that also implement the Result Producer interface[] [284] Underfull \hbox (badness 10000) in paragraph at lines 416--427 Overfull \hbox (53.24666pt too wide) in paragraph at lines 428--429 [][][]\OT1/cmtt/m/n/10 java -classpath "/development:/distribution/weka.jar" we ka.gui.GUIChooser Underfull \hbox (badness 10000) in paragraph at lines 428--429 [285] Underfull \hbox (badness 10000) in paragraph at lines 456--457 [286] [287] Underfull \hbox (badness 10000) in paragraph at lines 493--494 Underfull \hbox (badness 10000) in paragraph at lines 495--496 Underfull \hbox (badness 10000) in paragraph at lines 497--498 Underfull \hbox (badness 10000) in paragraph at lines 520--524 [288] Overfull \hbox (17.24684pt too wide) in paragraph at lines 567--567 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 574--577 Underfull \hbox (badness 10000) in paragraph at lines 577--585 [289] Underfull \hbox (badness 10000) in paragraph at lines 586--592 Overfull \hbox (21.24706pt too wide) in paragraph at lines 600--600 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 606--611 Overfull \hbox (26.49701pt too wide) in paragraph at lines 615--615 [] \OT1/cmtt/m/n/10 [] [290] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (32.9956pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (37.72055pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (9.37088pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Underfull \hbox (badness 10000) in paragraph at lines 663--668 [291] Underfull \hbox (badness 10000) in paragraph at lines 722--723 Underfull \hbox (badness 10000) in paragraph at lines 724--725 [292] Overfull \hbox (43.80186pt too wide) in paragraph at lines 749--750 []\OT1/cmr/m/n/10 The DTD for KOML can be found at [][][][] Underfull \hbox (badness 10000) in paragraph at lines 749--750 Underfull \hbox (badness 10000) in paragraph at lines 751--752 Underfull \hbox (badness 10000) in paragraph at lines 753--754 Overfull \hbox (75.44197pt too wide) in paragraph at lines 756--759 \OT1/cmr/m/n/10 put file (see op-tions of [][]\OT1/cmtt/m/n/10 weka.experiment. Experiment []\OT1/cmr/m/n/10 and [][]\OT1/cmtt/m/n/10 weka.experiment.RemoteExp eriment Underfull \hbox (badness 10000) in paragraph at lines 783--790 Overfull \hbox (3.01225pt too wide) in paragraph at lines 799--805 \OT1/cmr/m/n/10 The GraphVi-su-al-izer ([][]\OT1/cmtt/m/n/10 weka.gui.graphvisu alizer.GraphVisualizer[]\OT1/cmr/m/n/10 ) can save [293] Overfull \hbox (17.24684pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (11.99689pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] ) [294] Chapter 19. (./other_resources.tex Underfull \hbox (badness 10000) in paragraph at lines 51--56 Underfull \hbox (badness 10000) in paragraph at lines 57--58 [295] Underfull \hbox (badness 10000) in paragraph at lines 65--68 Underfull \hbox (badness 10000) in paragraph at lines 91--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 106--108 Underfull \vbox (badness 1371) has occurred while \output is active [296] Overfull \hbox (5.99707pt too wide) in paragraph at lines 109--110 [][][]\OT1/cmtt/m/n/10 java weka.core.converters.CSVLoader filename.csv > filen ame.arff Underfull \hbox (badness 10000) in paragraph at lines 109--110 Underfull \hbox (badness 10000) in paragraph at lines 112--114 Underfull \hbox (badness 10000) in paragraph at lines 115--116 Underfull \hbox (badness 10000) in paragraph at lines 123--126 Underfull \hbox (badness 10000) in paragraph at lines 127--128 Overfull \hbox (16.19777pt too wide) in paragraph at lines 132--138 \OT1/cmr/m/n/10 Get-ting [][]\OT1/cmtt/m/n/10 java.lang.NoClassDefFoundError [] \OT1/cmr/m/n/10 ex-cep-tions? Most likely your \OT1/cmr/bx/n/10 CLASS- Underfull \hbox (badness 10000) in paragraph at lines 132--138 Underfull \hbox (badness 10000) in paragraph at lines 139--140 Underfull \hbox (badness 10000) in paragraph at lines 141--142 Underfull \hbox (badness 10000) in paragraph at lines 143--144 [297] Underfull \hbox (badness 10000) in paragraph at lines 145--148 Underfull \hbox (badness 10000) in paragraph at lines 149--150 Underfull \hbox (badness 10000) in paragraph at lines 159--162 [298] Overfull \hbox (69.74638pt too wide) in paragraph at lines 236--236 []\OT1/cmtt/m/n/10 /usr/share/themes/Mist/gtk-2.0/gtkrc:48: Engine "mist" is un supported, ignoring[] Overfull \hbox (153.74565pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at weka.gui.explorer.PreprocessPanel.addPropertyChang eListener(PreprocessPanel.java:519)[] Overfull \hbox (95.99615pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installListene rs(SynthPanelUI.java:49)[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installUI(Synt hPanelUI.java:38)[] Underfull \hbox (badness 10000) in paragraph at lines 245--247 Underfull \hbox (badness 10000) in paragraph at lines 248--249 Underfull \hbox (badness 10000) in paragraph at lines 250--251 Underfull \hbox (badness 10000) in paragraph at lines 252--253 Underfull \hbox (badness 10000) in paragraph at lines 255--256 [299] Underfull \hbox (badness 10000) in paragraph at lines 257--258 Overfull \hbox (9.16362pt too wide) in paragraph at lines 264--265 []\OT1/cmr/m/n/10 Java VM op-tions ([][][][]) ) (./bibliography.tex [300] Underfull \hbox (badness 3514) in paragraph at lines 31--35 []\OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 -- A col-lec-tion of ex-am-p le classes, as part of Underfull \hbox (badness 5119) in paragraph at lines 31--35 \OT1/cmr/m/n/10 an ANT project, in-cluded in the WEKA snap-shots (avail-able Underfull \hbox (badness 10000) in paragraph at lines 31--35 \OT1/cmr/m/n/10 for down-load on the home-page) or di-rectly from sub-ver-sion Overfull \hbox (64.80228pt too wide) in paragraph at lines 31--35 [][][][] Underfull \vbox (badness 10000) has occurred while \output is active [301] Overfull \vbox (45.33775pt too high) has occurred while \output is active [302] Overfull \hbox (22.2144pt too wide) in paragraph at lines 103--106 []\OT1/cmr/m/n/9 Cozman. See [][][][] ) [303] (./manual.aux) LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on manual.dvi (303 pages, 966796 bytes). Transcript written on manual.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/epsfig.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/dvips.def)))) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hdvips.def (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pdfmark.def (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))) (./hyphenation.tex) (./extensions.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-dvips.def) (./manual.aux) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./manual.out) (./manual.out) [1] Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 \OT1/cmr/m/n/10 This man-ual is li-censed un-der the GNU Gen-eral Pub-lic Li-ce nse Underfull \hbox (badness 4279) in paragraph at lines 42--49 \OT1/cmr/m/n/10 ver-sion 2. More in-for-ma-tion about this li-cense can be foun d at [2] (./manual.toc [3] [4] [5] [6] [7] [8]) [9] [10] [11] [12] Chapter 1. (./commandline.tex [13] Overfull \hbox (1.64569pt too wide) in paragraph at lines 46--46 []\OT1/cmtt/m/n/7 % Any relation to real weather is purely coincidental.[] Overfull \hbox (20.43309pt too wide) in paragraph at lines 39--54 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 56--70 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 72--87 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 89--104 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 106--120 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 122--141 [] Underfull \vbox (badness 1616) has occurred while \output is active [14] Overfull \hbox (16.8051pt too wide) in paragraph at lines 155--156 \OT1/cmtt/m/n/10 converters.CSVLoader\OT1/cmr/m/n/10 , which can be used to im- port C45 datasets and comma/tab- [15] Overfull \hbox (63.24817pt too wide) in paragraph at lines 166--167 \OT1/cmr/m/n/10 Any learn-ing al-go-rithm in WEKA is de-rived from the ab-strac t \OT1/cmtt/m/n/10 weka.classifiers.Classifier [16] [17] [18] Overfull \hbox (2.46945pt too wide) in paragraph at lines 375--376 []\OT1/cmtt/m/n/10 meta.ClassificationViaRegression -W functions.LinearRegressi on [19] Overfull \hbox (20.43309pt too wide) in paragraph at lines 391--418 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 420--435 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 437--472 [] Underfull \vbox (badness 10000) has occurred while \output is active [20] Overfull \hbox (20.43309pt too wide) in paragraph at lines 474--511 [] [21] Overfull \hbox (0.61818pt too wide) in paragraph at lines 522--523 []\OT1/cmr/m/n/10 The \OT1/cmr/m/it/10 F-Measure \OT1/cmr/m/n/10 is sim-ply 2*P re-ci-sion*Recall/(Precision+Recall), a com-bined Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 0 diaporthe-stem-canker 0.9999672587892333 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 1 diaporthe-stem-canker 0.9999992614503429 diaporthe-stem-can ker[] Overfull \hbox (6.6621pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 2 diaporthe-stem-canker 0.999998948559035 diaporthe-stem-cank er[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 3 diaporthe-stem-canker 0.9999998441238833 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 4 diaporthe-stem-canker 0.9999989997681132 diaporthe-stem-can ker[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 5 rhizoctonia-root-rot 0.9999999395928124 rhizoctonia-root-ro t[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 7 rhizoctonia-root-rot 0.9999994386283236 rhizoctonia-root-ro t[] Underfull \hbox (badness 1953) in paragraph at lines 551--552 \OT1/cmr/m/n/10 dicted class value, the con-fi- Overfull \hbox (48.88585pt too wide) in paragraph at lines 533--555 [] Overfull \hbox (48.88585pt too wide) in paragraph at lines 557--580 [] Overfull \hbox (26.73993pt too wide) in paragraph at lines 592--593 \OT1/cmr/m/n/10 Dividing by the num-ber of in-stances in the test set, i.e. \OT 1/cmtt/m/n/10 wc -l < soybean-test.preds [22] (./includes/learning_curves.tex Overfull \hbox (67.78633pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -c last -i ../$f -o $run/t_$f[] Overfull \hbox (78.94272pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -V -c last -i ../$f -o $run/t0$f[] Overfull \hbox (38.03596pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.Resample -S 0 -Z 83 -c last -i $run/t$nr$f -o $run/t$nrp1$f[] [23]) Overfull \hbox (82.66151pt too wide) in paragraph at lines 663--663 [] \OT1/cmtt/m/n/7 -M "weka.classifiers.meta.ClassificationViaRegression -W weka.classifiers.functions.LinearRegression -- -S 1" \[] ) [24] [25] [26] Chapter 2. (./launching.tex [27] Overfull \hbox (9.861pt too wide) in paragraph at lines 86--87 []\OT1/cmr/bx/n/10 Weka on Source-forge \OT1/cmr/m/n/10 WEKA's project home-pag e on Source-forge.net. [28]) [29] [30] Chapter 3. (./simplecli.tex [31] [32] Overfull \hbox (67.06445pt too wide) in paragraph at lines 92--94 \OT1/cmr/m/n/10 with a dot (Unix/Linux: \OT1/cmtt/m/n/10 ./some/other/path/file \OT1/cmr/m/n/10 ; Win-dows: .$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Some$\OMS/cmsy /m/n/10 n$\OT1/cmr/m/n/10 Other$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Path$\OMS/cm sy/m/n/10 n$\OT1/cmr/m/n/10 file). ) [33] [34] Chapter 4. (./explorer.tex [35] [36] [37] [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 298--308 [40] [41] [42] [43] [44] [45] [46] [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 657--666 [49] [50]) [51] [52] Chapter 5. (./experimenter.tex [53] [54] Underfull \vbox (badness 1082) has occurred while \output is active [55] [56] [57] [58] [59] Underfull \vbox (badness 10000) has occurred while \output is active [60] [61] [62] Underfull \vbox (badness 7704) has occurred while \output is active [63] [64] [65] Underfull \vbox (badness 10000) has occurred while \output is active [66] Overfull \hbox (74.99634pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme {weka.classifiers.rules.ZeroR,weka.cl assifiers.trees.J48}[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme_version_ID {48055541465867954,-217733 168393644444}[] [67] Overfull \hbox (1.49698pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Summary {'Number of leaves: 3\nSize of the tree: 5\n',[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 iris,1,weka.classifiers.rules.ZeroR,,48055541465867954,2005 1221.033,99,51,[] Overfull \hbox (69.74638pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 17,34,0,33.333333,66.666667,0,0,0.444444,0.471405,100,100,8 0.833088,80.833088,[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 0,1.584963,1.584963,0,0,0,0,1,17,1,34,0,0,0,0,0.333333,1,0. 5,0.5,0,0,?,?,?,?[] [68] [69] Underfull \vbox (badness 10000) has occurred while \output is active [70] Underfull \vbox (badness 10000) has occurred while \output is active [71] [72] [73] Overfull \hbox (38.24666pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 ClassifierSplitEvaluator: weka.classifiers.trees.J48 -C 0.25 -M 2(version[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Correctly Classified Instances 47 92. 1569 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 4 7. 8431 %[] [74] [75] [76] Overfull \hbox (0.2135pt too wide) in paragraph at lines 584--585 []\OT1/cmr/m/n/10 As with the other Re-sult-Pro-duc-ers, ad-di-tional schemes c an be de-fined. When Underfull \vbox (badness 10000) has occurred while \output is active [77] Underfull \vbox (badness 10000) has occurred while \output is active [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 605--610 Overfull \hbox (34.37631pt too wide) in paragraph at lines 613--614 [] [80] [81] Overfull \hbox (8.24261pt too wide) in paragraph at lines 656--657 [] [82] Overfull \hbox (17.30408pt too wide) in paragraph at lines 686--687 []\OT1/cmr/m/n/10 Additional jar archives, i.e., JDBC drivers, are stored in \O T1/cmtt/m/n/10 /home/johndoe/jars\OT1/cmr/m/n/10 . [83] Overfull \hbox (12.8892pt too wide) in paragraph at lines 737--738 []\OT1/cmr/m/n/10 Create a script, called \OT1/cmtt/m/n/10 /home/johndoe/remote []engine/startRemoteEngine\OT1/cmr/m/n/10 , Overfull \hbox (22.24724pt too wide) in paragraph at lines 745--745 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/hsqldb.jar:remoteEngine.jar \[] Overfull \hbox (16.99728pt too wide) in paragraph at lines 753--753 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/mysql.jar:remoteEngine.jar \[] [84] Overfull \hbox (75.70413pt too wide) in paragraph at lines 778--779 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:h sqldb:hsql://server[]name/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (11.41405pt too wide) in paragraph at lines 778--779 \OT1/cmr/m/n/9 server (e.g., \OT1/cmtt/m/n/9 jdbcURL=jdbc:hsqldb:hsql://dodo.co mpany.com/experiment\OT1/cmr/m/n/9 ). Overfull \hbox (89.44553pt too wide) in paragraph at lines 785--785 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/hsqldb.jar:remoteEngine.jar:/home/j ohndoe/weka/weka.jar \[] Overfull \hbox (70.97919pt too wide) in paragraph at lines 791--792 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:m ysql://server[]name:3306/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (84.72058pt too wide) in paragraph at lines 798--798 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/mysql.jar:remoteEngine.jar:/home/jo hndoe/weka/weka.jar \[] [85] Overfull \hbox (10.74715pt too wide) in paragraph at lines 832--833 []\OT1/cmtt/m/n/10 01:13:19: RemoteExperiment (//blabla.company.com/RemoteEngin e) Overfull \hbox (9.27715pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 java.sql.SQLException: Table already exists: EXPERIMENT[]INDEX Overfull \hbox (2.55719pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 LONGVARCHAR, Experiment[]setup LONGVARCHAR, Result[]table INT )] Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 (//blabla.company.com/RemoteEngine) (sub)experiment (datataset Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 vineyard.arff) failed : java.sql.SQLException: Table already Overfull \hbox (11.5871pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 Experiment[]index ( Experiment[]type LONGVARCHAR, Experiment[] setup [86] [87] [88] Underfull \vbox (badness 10000) has occurred while \output is active [89] [90] [91] Underfull \vbox (badness 10000) has occurred while \output is active [92] ) [93] [94] Chapter 6. (./knowledgeflow.tex [95] [96] [97] [98] Overfull \hbox (36.43697pt too wide) in paragraph at lines 133--135 []\OT1/cmr/m/it/10 ClassifierPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate the per-for-mance of batch trained/tested Overfull \hbox (35.54247pt too wide) in paragraph at lines 137--139 []\OT1/cmr/m/it/10 ClustererPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate t he per-for-mance of batch trained/tested [99] [100] [101] [102] Overfull \hbox (11.53027pt too wide) in paragraph at lines 268--269 [] [103] [104] Overfull \hbox (24.88557pt too wide) in paragraph at lines 359--360 [] [105] [106] Overfull \hbox (1.07347pt too wide) in paragraph at lines 435--453 \OT1/cmr/m/n/10 mech-a-nism. Plu-g-ins are in-stalled in a di-rec-tory called [ ][]\OT1/cmtt/m/n/10 .knowledgeFlow/plugins Overfull \hbox (69.74638pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ jar tvf /Users/mhall/.knowledgeFlow/plugins/ kettle/kettleKF.jar[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:20 NZDT 2008 weka/gui/beans/icons/Ke ttleInput.gif[] Overfull \hbox (85.49625pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:18 NZDT 2008 weka/gui/beans/icons/Ke ttleInput_animated.gif[] Overfull \hbox (17.24684pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 1839 Wed Feb 20 13:59:08 NZDT 2008 weka/gui/beans/KettleIn put.class[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 174 Tue Feb 19 15:27:24 NZDT 2008 weka/gui/beans/KettleIn putBeanInfo.class[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ more /Users/mhall/.knowledgeFlow/plugins/ket tle/Beans.props[] ) [107] [108] Chapter 7. (./arffviewer.tex [109] [110] [111] [112] ) [113] [114] Chapter 8. (./bayesnet.tex [115] [116] Underfull \vbox (badness 2103) has occurred while \output is active [117] Overfull \hbox (13.24905pt too wide) in paragraph at lines 180--185 \OT1/cmr/m/n/10 fer-ent from the ADTree clas-si-fier al-go-rithm from \OT1/cmtt /m/n/10 weka.classifiers.tree.ADTree\OT1/cmr/m/n/10 . [118] [119] [120] Underfull \hbox (badness 10000) in paragraph at lines 331--336 [121] Underfull \hbox (badness 10000) in paragraph at lines 352--356 Underfull \hbox (badness 10000) in paragraph at lines 361--376 [122] Overfull \hbox (38.44424pt too wide) has occurred while \output is active \OT1/cmr/m/sl/10 8.3. CONDITIONAL INDEPENDENCE TEST BASED STRUCTURE LEARNING \ OT1/cmr/m/n/10 123 [123] Overfull \hbox (106.49606pt too wide) in paragraph at lines 426--426 [] \OT1/cmtt/m/n/10 Rule 5: if no edges are directed then take a rand om one (first we can find)[] Underfull \hbox (badness 10000) in paragraph at lines 434--442 [124] Underfull \vbox (badness 1867) has occurred while \output is active [125] [126] [127] Overfull \hbox (28.27066pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Sets test file. If missing, a cross-validation will b e performed on the[] [128] Overfull \hbox (14.09583pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Retrieves the options from the XML-data instead of th e command line.[] [129] Overfull \hbox (57.99673pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [130] Overfull \hbox (42.24687pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [131] Overfull \hbox (42.24687pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [132] Overfull \hbox (42.24687pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 When determining whether an edge exists a search is performed[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 for a set Z that separates the nodes. MaxCardinalit y determines[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 the maximum size of the set Z. This greatly influen ces the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] [133] Overfull \hbox (31.74696pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [134] Overfull \hbox (42.24687pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [135] Overfull \hbox (42.24687pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 961--961 [] \OT1/cmtt/m/n/10 Name of file containing network structure in BIF fo rmat[] [136] [137] Overfull \hbox (641.9914pt too wide) in paragraph at lines 1043--1043 []\OT1/cmtt/m/n/10 Scheme: weka.classifiers.bayes.BayesNet -D -B iris.xml -Q weka.classifiers.bayes.net.search.local.K2 -- -P 2 -S BAYES -E weka.classif iers.bayes.net.estimate.SimpleEstimator -- -A 0.5[] Overfull \hbox (106.49606pt too wide) in paragraph at lines 1061--1061 []\OT1/cmtt/m/n/10 Relation: iris-weka.filters.unsupervised.attribute.Discr etize-B2-M-1.0-Rfirst-last[] [138] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Correctly Classified Instances 116 77. 3333 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 34 22. 6667 %[] [139] [140] Underfull \hbox (badness 10000) in paragraph at lines 1181--1191 [141] Overfull \hbox (109.99007pt too wide) in paragraph at lines 1199--1200 [] Underfull \vbox (badness 4569) has occurred while \output is active [142] Overfull \hbox (31.52597pt too wide) in paragraph at lines 1232--1244 \OT1/cmr/m/n/10 vari-ables are dis-cretized us-ing the \OT1/cmtt/m/n/10 weka.fi lters.supervised.attribute.Discretize Underfull \vbox (badness 10000) has occurred while \output is active [143] [144] Underfull \hbox (badness 10000) in paragraph at lines 1298--1308 Overfull \hbox (5.15332pt too wide) in paragraph at lines 1316--1319 []\OT1/cmr/m/n/10 The Gen-er-ate Net-work menu al-lows gen-er-a-tion of a com-p lete ran-dom Bayesian [145] [146] Overfull \hbox (17.96149pt too wide) in paragraph at lines 1375--1376 [] Underfull \vbox (badness 10000) has occurred while \output is active [147] Overfull \hbox (11.45515pt too wide) in paragraph at lines 1409--1410 [] [148] [149] [150] Underfull \vbox (badness 1675) has occurred while \output is active [151] [152] [153] Overfull \hbox (76.10909pt too wide) in paragraph at lines 1570--1576 []\OT1/cmr/m/n/10 Create a class that de-rives from \OT1/cmtt/m/n/10 weka.class ifiers.bayes.net.search.SearchAlgorithm\OT1/cmr/m/n/10 . Overfull \hbox (6.74959pt too wide) in paragraph at lines 1570--1576 \OT1/cmr/m/n/10 validation based, you prob-a-bly want to de-rive from \OT1/cmtt /m/n/10 ScoreSearchAlgorithm\OT1/cmr/m/n/10 , Overfull \hbox (56.55356pt too wide) in paragraph at lines 1570--1576 \OT1/cmtt/m/n/10 CISearchAlgorithm \OT1/cmr/m/n/10 or \OT1/cmtt/m/n/10 CVSearch Algorithm \OT1/cmr/m/n/10 in-stead of de-riv-ing from \OT1/cmtt/m/n/10 SearchAl gorithm Overfull \hbox (29.2748pt too wide) in paragraph at lines 1577--1582 \OT1/cmtt/m/n/10 public void buildStructure(BayesNet bayesNet, Instances instan ces)\OT1/cmr/m/n/10 . Overfull \hbox (6.05424pt too wide) in paragraph at lines 1577--1582 \OT1/cmr/m/n/10 You can ac-cess the par-entsets us-ing \OT1/cmtt/m/n/10 bayesNe t.getParentSet(iAttribute) Overfull \hbox (10.74715pt too wide) in paragraph at lines 1583--1587 \OT1/cmtt/m/n/10 bayesNet.getParentSet(iAttribute).AddParent(iParent, instances ) Overfull \hbox (36.44255pt too wide) in paragraph at lines 1588--1596 []\OT1/cmr/m/n/10 Alternatively, im-ple-ment \OT1/cmtt/m/n/10 public void searc h(BayesNet bayesNet, Instances Overfull \hbox (2.57175pt too wide) in paragraph at lines 1617--1621 \OT1/cmtt/m/n/10 weka.classifiers.bayes.net.estimate.BayesNetEstimator\OT1/cmr/ m/n/10 . Let's say Overfull \hbox (29.2748pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public void updateClassifier(BayesNet bayesNet, Instance insta nce)\OT1/cmr/m/n/10 , Overfull \hbox (31.74696pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public double[] distributionForInstance(BayesNet bayesNet, Ins tance [154] Overfull \hbox (7.02576pt too wide) in paragraph at lines 1644--1648 \OT1/cmr/m/n/10 Use the class \OT1/cmtt/m/n/10 weka.filters.unsupervised.attrib ute.Discretize \OT1/cmr/m/n/10 to dis-cretize Overfull \hbox (27.74675pt too wide) in paragraph at lines 1644--1648 \OT1/cmtt/m/n/10 java weka.filters.unsupervised.attribute.Discretize -B 3 -i in file.arff Overfull \hbox (1.49698pt too wide) in paragraph at lines 1655--1659 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -B -N 10 -A 9 -C Overfull \hbox (1.49698pt too wide) in paragraph at lines 1661--1665 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -N 15 -A 20 -C 3 Overfull \hbox (22.4968pt too wide) in paragraph at lines 1667--1671 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -F alarm.xml -M 1000 [155] [156] Overfull \hbox (5.66734pt too wide) in paragraph at lines 1731--1735 []\OT1/cmr/m/n/10 Only leave-one-out, k-fold and cu-mu-la-tive cross-validation are im-ple-mented. Overfull \hbox (8.08392pt too wide) in paragraph at lines 1731--1735 \OT1/cmr/m/n/10 These im-ple-men-ta-tions can be made more ef-fi-cient and othe r cross-validation ) [157] [158] [159] [160] Chapter 9. (./arff.tex Overfull \hbox (6.74693pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 % (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.na sa.gov)[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 @ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris- virginica}[] [161] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [162] Overfull \hbox (2.27603pt too wide) in paragraph at lines 116--117 \OT1/cmr/m/n/10 pos-si-ble val-ues: $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 nomina l-name1$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n /10 nominal-name2$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT 1/cmtt/m/n/10 nominal-name3$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , [163] [164] [165]) [166] Chapter 10. (./xrff.tex [167] Overfull \hbox (80.24629pt too wide) in paragraph at lines 127--127 [] \OT1/cmtt/m/n/10 [] [168] [169] [170]) [171] [172] Chapter 11. (./converters.tex [173] Overfull \hbox (10.74715pt too wide) in paragraph at lines 70--70 [] \OT1/cmtt/m/n/10 java weka.core.converters.CSVSaver -i iris.arff -o iris .csv[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 99--99 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseLoader -Q "select * fro m employee"[] [174] Overfull \hbox (15.9971pt too wide) in paragraph at lines 104--104 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseSaver -i iris.arff -T iris[] ) [175] [176] Chapter 12. (./stemmers.tex Overfull \hbox (68.33246pt too wide) in paragraph at lines 29--30 \OT1/cmr/m/n/10 Weka con-tains a wrap-per class for the Snow-ball (home-page: [ ][][][]) [177] Overfull \hbox (46.33209pt too wide) in paragraph at lines 49--50 []\OT1/cmr/m/n/10 within the String-ToWord-Vec-tor (pack-age \OT1/cmtt/m/n/10 w eka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ) Overfull \hbox (4.85867pt too wide) in paragraph at lines 73--74 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 GenericObjectEditor.props\OT1/cmr/m/n/10 / \OT1/cmtt/m/n/10 GenericPropertiesCreator.props \OT1/cmr/m/n/10 file ) [178] Chapter 13. (./databases.tex Overfull \hbox (9.77429pt too wide) in paragraph at lines 37--38 []\OT1/cmtt/m/n/10 DatabaseUtils.props.mssqlserver2005 \OT1/cmr/m/n/10 - MS SQL Server 2005 ($\OML/cmm/m/it/10 >\OT1/cmr/m/n/10 =$3.4.11, Overfull \hbox (9.10817pt too wide) in paragraph at lines 39--41 []\OT1/cmtt/m/n/10 DatabaseUtils.props.odbc \OT1/cmr/m/n/10 - ODBC ac-cess via Sun's ODBC/JDBC bridge, Underfull \hbox (badness 10000) in paragraph at lines 46--47 Underfull \hbox (badness 10000) in paragraph at lines 48--49 [179] [180] Overfull \hbox (89.10794pt too wide) in paragraph at lines 103--108 \OT1/cmtt/m/n/10 jdbc:postgresql://server.my.domain:5432/MyDatabase?user=$\OML/ cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 &passwor d=$\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$ Underfull \vbox (badness 3679) has occurred while \output is active [181] [182] Overfull \hbox (27.9972pt too wide) in paragraph at lines 183--185 [][][][] Overfull \hbox (0.8047pt too wide) in paragraph at lines 201--202 \OT1/cmr/m/n/10 com-mand \OT1/cmtt/m/n/10 java weka.core.SystemInfo \OT1/cmr/m/ n/10 and check whether the prop- ) [183] [184] Chapter 14. (./windows_databases.tex [185] [186]) [187] [188] [189] [190] Chapter 15. (./research.tex Overfull \hbox (31.02701pt too wide) in paragraph at lines 32--33 \OT1/cmr/m/n/10 ter-face it is now easy to ex-tract all the pa-per ref-er-ences via \OT1/cmtt/m/n/10 weka.core.ClassDiscovery [191] (./includes/get_wekatechinfo.tex [192] Overfull \hbox (90.0991pt too wide) in paragraph at lines 124--124 []\OT1/cmtt/m/n/7 TECHINFOHANDLERS=`$JAVA weka.core.ClassDiscovery $TECHINFOHAN DLER $PACKAGES | grep "\. weka" | sed s/".*weka"/weka/g`[] )) [193] [194] Chapter 16. (./using_api.tex Underfull \hbox (badness 10000) in paragraph at lines 35--40 [195] Overfull \hbox (3.8326pt too wide) in paragraph at lines 104--113 \OT1/cmr/m/n/10 support-vector ma-chine clas-si-fier \OT1/cmr/m/it/10 SMO \OT1/ cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.classifiers.functions\OT1/cmr/m/n/10 ) [196] Overfull \hbox (8.05441pt too wide) in paragraph at lines 125--130 \OT1/cmr/m/n/10 method, it is best to have a look at the \OT1/cmtt/m/n/10 setOp tions(String[]) \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 getOptions() Overfull \hbox (6.08145pt too wide) in paragraph at lines 140--148 []\OT1/cmr/m/n/10 A \OT1/cmtt/m/n/10 SelectedTag \OT1/cmr/m/n/10 gets con-struc ted us-ing the ar-ray of all pos-si-ble \OT1/cmtt/m/n/10 weka.core.Tag Overfull \hbox (11.99689pt too wide) in paragraph at lines 156--156 [] \OT1/cmtt/m/n/10 setEvaluation(new SelectedTag(EVALUATION_CC, TAGS_EVALU ATION));[] [197] Overfull \hbox (1.93398pt too wide) in paragraph at lines 178--183 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 attribute(int) \OT1/cmr/m/n/10 method. Thi s method re-turns \OT1/cmtt/m/n/10 weka.core.Attribute Overfull \hbox (27.33139pt too wide) in paragraph at lines 203--206 []\OT1/cmr/m/n/10 The \OT1/cmtt/m/n/10 DataSource \OT1/cmr/m/n/10 class (in-ner class of the \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils [198] Underfull \hbox (badness 10000) in paragraph at lines 246--249 Overfull \hbox (3.25064pt too wide) in paragraph at lines 299--301 \OT1/cmr/m/n/10 loaded into mem-ory and then pro-vided row-by-row (``pseudo-inc remental''). [199] [200] Overfull \hbox (21.26906pt too wide) in paragraph at lines 318--321 \OT1/cmr/m/n/10 The class \OT1/cmtt/m/n/10 wekaexamples.core.CreateInstances \O T1/cmr/m/n/10 of the \OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 collectio n[[]] Overfull \hbox (41.44293pt too wide) in paragraph at lines 332--335 \OT1/cmr/m/n/10 For all of the dif-fer-ent at-tribute types, WEKA uses the same class, \OT1/cmtt/m/n/10 weka.core.Attribute\OT1/cmr/m/n/10 , Overfull \hbox (0.24724pt too wide) in paragraph at lines 351--351 []\OT1/cmtt/m/n/10 Attribute date = new Attribute("name_of_attr", "yyyy-MM-dd" );[] Overfull \hbox (36.99692pt too wide) in paragraph at lines 372--372 []\OT1/cmtt/m/n/10 Attribute string = new Attribute("name_of_attr", (FastVecto r) null);[] Underfull \vbox (badness 10000) has occurred while \output is active [201] Overfull \vbox (28.493pt too high) has occurred while \output is active [202] Overfull \hbox (21.24706pt too wide) in paragraph at lines 390--390 []\OT1/cmtt/m/n/10 Attribute relational = new Attribute("name_of_attr", rel_st ruct);[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 408--408 [] \OT1/cmtt/m/n/10 Instances dataset = new Instances("Test-dataset", attribu tes, 0);[] Overfull \hbox (9.12917pt too wide) in paragraph at lines 418--421 \OT1/cmr/m/n/10 to it, row by row. There are ba-si-cally two con-struc-tors of the \OT1/cmtt/m/n/10 weka.core.Instance Overfull \hbox (12.8311pt too wide) in paragraph at lines 422--426 []\OT1/cmtt/m/n/10 Instance(double weight, double[] attValues) \OT1/cmr/m/n/10 -- gen-er-ates an \OT1/cmtt/m/n/10 Instance Overfull \vbox (34.59024pt too high) has occurred while \output is active [203] Overfull \hbox (21.24706pt too wide) in paragraph at lines 468--468 []\OT1/cmtt/m/n/10 values[3] = data.attribute(3).addStringValue("This is a str ing");[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 480--480 []\OT1/cmtt/m/n/10 Instances dataRel = new Instances(data.attribute(4).relatio n(),0);[] [204] Overfull \hbox (24.165pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 Simply gen-er-at-ing an ARFF file is achieved us-ing the static \OT1/cmtt/m/n/10 DataGenerator.makeData Overfull \hbox (28.96251pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 method. In or-der to write to a file, the gen-er-a-tor needs to have a \OT1/cmtt/m/n/10 java.io.PrintWriter Overfull \hbox (6.74693pt too wide) in paragraph at lines 520--520 [] \OT1/cmtt/m/n/10 new java.io.BufferedWriter(new java.io.FileWriter("rdg1.ar ff")));[] [205] Overfull \hbox (20.5538pt too wide) in paragraph at lines 567--570 []\OT1/cmr/m/n/10 Using the \OT1/cmtt/m/n/10 Randomize \OT1/cmr/m/n/10 fil-ter (pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.instance\OT1/cmr/m/n/10 ). [206] [207] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 remove.setInputFormat(data); // inform filter abo ut dataset[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 // **AFTER** setting options[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 Instances newData = Filter.useFilter(data, remove); // ap ply filter[] Overfull \hbox (18.08133pt too wide) in paragraph at lines 672--677 \OT1/cmr/m/n/10 A com-mon trap to fall into is set-ting op-tions \OT1/cmr/bx/n/ 10 af-ter \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 setInputFormat(Instances) Overfull \hbox (5.97029pt too wide) in paragraph at lines 689--693 \OT1/cmr/m/n/10 with the \OT1/cmtt/m/n/10 Standardize \OT1/cmr/m/n/10 fil-ter ( pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ): [208] Overfull \hbox (17.5531pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 like \OT1/cmtt/m/n/10 FilteredClassifier \OT1/cmr/m/n/10 (pack- age \OT1/cmtt/m/n/10 weka.classifiers.meta\OT1/cmr/m/n/10 ), \OT1/cmtt/m/n/10 F ilteredClusterer Overfull \hbox (12.72011pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.clusterers\OT1/cmr/m/n/10 ), \O T1/cmtt/m/n/10 FilteredAssociator \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 we ka.associations\OT1/cmr/m/n/10 ) Overfull \hbox (27.16393pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 FilteredAttributeEval\OT1/cmr/m/n/10 /\OT1 /cmtt/m/n/10 FilteredSubsetEval \OT1/cmr/m/n/10 (in \OT1/cmtt/m/n/10 weka.attri buteSelection\OT1/cmr/m/n/10 ). [209] Overfull \hbox (20.1095pt too wide) in paragraph at lines 817--824 \OT1/cmr/m/n/10 All in-cre-men-tal clas-si-fiers in WEKA im-ple-ment the in-ter -face \OT1/cmtt/m/n/10 UpdateableClassifier Overfull \hbox (5.91695pt too wide) in paragraph at lines 831--833 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row, by call-ing the \OT1/cmtt/m/n/10 updateClassifier(Instance) [210] [211] Overfull \hbox (21.05566pt too wide) in paragraph at lines 872--874 \OT1/cmr/m/n/10 The eval-u-a-tion step, in-clud-ing col-lec-tion of statis-tics , is per-formed by the \OT1/cmtt/m/n/10 Evaluation [212] Overfull \hbox (11.99689pt too wide) in paragraph at lines 910--910 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 940--940 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] [213] Overfull \hbox (11.55396pt too wide) in paragraph at lines 950--952 []\OT1/cmtt/m/n/10 toClassDetailsString \OT1/cmr/m/n/10 -- out-puts TP/FP rates , pre-ci-sion, re-call, F-measure, Overfull \hbox (0.47084pt too wide) in paragraph at lines 952--954 []\OT1/cmtt/m/n/10 toCumulativeMarginDistributionString \OT1/cmr/m/n/10 -- out- puts the cu-mu-la-tive mar- [214] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 Instances unlabeled = DataSource.read("/some/where/unlabe led.arff");[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 double clsLabel = tree.classifyInstance(unlabeled.insta nce(i));[] Overfull \hbox (6.74693pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 double[] dist = cls.distributionForInstance(test.instan ce(i));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.instance(i).toString(test.classIn dex()) + " - ");[] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.classAttribute().value((int) pred ) + " - ");[] [215] Overfull \hbox (12.30984pt too wide) in paragraph at lines 1083--1087 []\OT1/cmr/m/it/10 build the model \OT1/cmr/m/n/10 with train-ing data -- call- ing the \OT1/cmtt/m/n/10 buildClusterer(Instances) Overfull \hbox (0.94284pt too wide) in paragraph at lines 1104--1108 \OT1/cmr/m/n/10 Incremental clus-ter-ers in WEKA im-ple-ment the in-ter-face \O T1/cmtt/m/n/10 UpdateableClusterer Overfull \hbox (13.7781pt too wide) in paragraph at lines 1112--1114 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row by call-ing the the \OT1/cmtt/m/n/10 updateClusterer(Instance) Underfull \vbox (badness 10000) has occurred while \output is active [216] Overfull \vbox (79.67348pt too high) has occurred while \output is active [217] [218] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1160--1160 [] \OT1/cmtt/m/n/10 System.out.println(ClusterEvaluation.evaluateClusterer(new EM(), options));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 DensityBasedClusterer clusterer = new ... // the clust erer to evaluate[] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 new Random(1)); // and rando m number generator[] [219] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 filter.setAttributeIndices("" + (data.classIndex() + 1) );[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 Instances dataClusterer = Filter.useFilter(data, filter );[] [220] Overfull \hbox (3.69315pt too wide) in paragraph at lines 1247--1249 []\OT1/cmtt/m/n/10 clusterInstance(Instance) \OT1/cmr/m/n/10 -- de-ter-mines th e clus-ter the \OT1/cmtt/m/n/10 Instance \OT1/cmr/m/n/10 would Overfull \hbox (6.74693pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 int cluster = clusterer.clusterInstance(dataset2.instan ce(i));[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 double[] dist = clusterer.distributionForInstance(datas et2.instance(i));[] [221] Underfull \hbox (badness 10000) in paragraph at lines 1285--1290 Overfull \hbox (3.35565pt too wide) in paragraph at lines 1293--1298 []\OT1/cmr/m/it/10 single at-tribute eval-u-a-tors \OT1/cmr/m/n/10 -- per-form eval-u-a-tions on sin-gle at-tributes. These [222] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 AttributeSelectedClassifier classifier = new AttributeSel ectedClassifier();[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 evaluation.crossValidateModel(classifier, data, 10, new R andom(1));[] [223] Overfull \hbox (27.4348pt too wide) in paragraph at lines 1383--1388 \OT1/cmr/m/n/10 train-ing a clas-si-fier, then the fil-ter ap-proach is the rig ht one. The \OT1/cmtt/m/n/10 AttributeSelection [224] [225] Overfull \hbox (50.86061pt too wide) in paragraph at lines 1465--1470 \OT1/cmr/m/n/10 ing the data or use an ex-plicit con-verter (all savers are lo- cated in the \OT1/cmtt/m/n/10 weka.core.converters Overfull \hbox (22.94261pt too wide) in paragraph at lines 1471--1474 []\OT1/cmr/m/n/10 Use the \OT1/cmtt/m/n/10 DataSink \OT1/cmr/m/n/10 class (in-n er class of \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils\OT1/cmr/m/n/10 ), [226] [227] Overfull \hbox (34.02615pt too wide) in paragraph at lines 1575--1578 \OT1/cmr/m/n/10 tions, us-ing the \OT1/cmtt/m/n/10 ThresholdCurve \OT1/cmr/m/n/ 10 class (pack-age \OT1/cmtt/m/n/10 weka.classifiers.evaluation\OT1/cmr/m/n/10 ). Overfull \hbox (30.6928pt too wide) in paragraph at lines 1580--1583 \OT1/cmr/m/n/10 in-stance of the \OT1/cmtt/m/n/10 ThresholdVisualizePanel \OT1/ cmr/m/n/10 class (pack-age \OT1/cmtt/m/n/10 weka.gui.visualize\OT1/cmr/m/n/10 ) . Overfull \hbox (5.4972pt too wide) in paragraph at lines 1594--1594 []\OT1/cmtt/m/n/10 Instances curve = tc.getCurve(eval.predictions(), classInde x);[] Overfull \hbox (15.9971pt too wide) in paragraph at lines 1610--1610 [] \OT1/cmtt/m/n/10 Utils.doubleToString(ThresholdCurve.getROCArea(curve),4)+ ")");[] [228] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1665--1665 [] \OT1/cmtt/m/n/10 JFrame jf = new JFrame("Weka Classifier Tree Visualizer: J48");[] [229] [230] [231] Overfull \hbox (17.24684pt too wide) in paragraph at lines 1778--1778 [] \OT1/cmtt/m/n/10 Object o[] = SerializationHelper.readAll("/some/where/j48 .model");[] ) [232] Chapter 17. (./extending.tex [233] (./extending_classifier.tex Underfull \vbox (badness 10000) has occurred while \output is active [234] Overfull \vbox (64.17354pt too high) has occurred while \output is active [235] [236] [237] Overfull \hbox (6.74693pt too wide) in paragraph at lines 192--192 [] \OT1/cmtt/m/n/10 result.addAll(Arrays.asList(super.getOptions())); // sup erclass[] Overfull \hbox (30.47186pt too wide) in paragraph at lines 227--231 \OT1/cmr/m/n/10 re-turns the class prob-a-bil-i-ties ar-ray of the pre-dic-tion for the given \OT1/cmtt/m/n/10 weka.core.Instance [238] Overfull \hbox (42.88777pt too wide) in paragraph at lines 232--243 \OT1/cmr/m/n/10 bel in-dex based on the prob-a-bil-i-ties ar-ray that the \OT1/ cmtt/m/n/10 distributionForInstance(Instance) [239] [240] [241] Underfull \hbox (badness 10000) in paragraph at lines 360--374 Overfull \hbox (0.55939pt too wide) in paragraph at lines 390--397 []\OT1/cmr/m/it/10 multi-instance clas-si-fiers \OT1/cmr/m/n/10 -- in or-der to sig-nal that the spe-cial multi-instance Overfull \hbox (5.27605pt too wide) in paragraph at lines 390--397 \OT1/cmr/m/n/10 instance, \OT1/cmtt/m/n/10 weka.core.MultiInstanceCapabilitiesH andler\OT1/cmr/m/n/10 , which re-turns [242] Overfull \hbox (5.08153pt too wide) in paragraph at lines 441--446 \OT1/cmr/m/n/10 in case of de-scen-dants of the \OT1/cmtt/m/n/10 weka.classifie r.MultipleClassifiersCombiner\OT1/cmr/m/n/10 , Overfull \hbox (14.09583pt too wide) in paragraph at lines 461--461 [] \OT1/cmtt/m/n/9 result.enable(Capability.NOMINAL_CLASS); // only nominal classes allowed[] [243] Overfull \vbox (104.0pt too high) has occurred while \output is active [244] [245] Overfull \hbox (17.24684pt too wide) in paragraph at lines 603--603 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (59.46141pt too wide) in paragraph at lines 640--645 \OT1/cmr/m/n/10 class. The su-per-class for clas-si-fier unit tests is \OT1/cmt t/m/n/10 weka.classifiers.AbstractClassifierTest\OT1/cmr/m/n/10 . ) [246] (./extending_filter.tex Overfull \hbox (26.02608pt too wide) in paragraph at lines 63--67 \OT1/cmtt/m/n/10 weka.filters.Filter \OT1/cmr/m/n/10 su-per-class does not im-p le-ment the \OT1/cmtt/m/n/10 weka.core.OptionHandler [247] [248] Overfull \hbox (34.38815pt too wide) in paragraph at lines 125--132 \OT1/cmr/m/n/10 de-ter-mine what the out-put for-mat will be (and set if via \O T1/cmtt/m/n/10 setOutputFormat(Instances)\OT1/cmr/m/n/10 ) [249] (./includes/BatchFilter.tex) [250] (./includes/BatchFilter2.tex) [251] (./includes/BatchFilter3.tex) Overfull \vbox (68.45831pt too high) has occurred while \output is active [252] (./includes/StreamFilter.tex) [253] [254] (./includes/SimpleBatch.tex Overfull \hbox (33.25543pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 return "A simple batch filter that adds an additional a ttribute 'blah' at the end "[] Overfull \hbox (7.75507pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [255] [256] (./includes/SimpleStream.tex Overfull \hbox (7.75507pt too wide) in paragraph at lines 50--50 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [257] Overfull \hbox (15.32312pt too wide) in paragraph at lines 319--322 \OT1/cmr/m/n/10 bu-tions into ac-count. Must im-ple-ment the \OT1/cmtt/m/n/10 w eka.filters.SupervisedFilter Overfull \hbox (0.93573pt too wide) in paragraph at lines 336--338 \OT1/cmr/m/n/10 The Javadoc gen-er-a-tion works the same as with clas-si-fiers. See sec-tion ``Javadoc'' [258] Overfull \hbox (17.24684pt too wide) in paragraph at lines 360--360 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (77.71982pt too wide) in paragraph at lines 386--390 []\OT1/cmr/m/n/10 Here is an ex-am-ple call for \OT1/cmtt/m/n/10 weka.filters.u nsupervised.attribute.ReplaceMissingValues ) [259] (./extending_other_algorithms.tex Overfull \hbox (1.7496pt too wide) in paragraph at lines 36--39 \OT1/cmr/m/n/10 like the \OT1/cmtt/m/n/10 FilteredClusterer \OT1/cmr/m/n/10 tha t fil-ters the data on-the-fly for the base-clusterer. Underfull \hbox (badness 10000) in paragraph at lines 36--39 Overfull \hbox (56.46068pt too wide) in paragraph at lines 50--55 \OT1/cmr/m/n/10 one way or an-other. \OT1/cmtt/m/n/10 RandomizableClusterer\OT1 /cmr/m/n/10 , \OT1/cmtt/m/n/10 RandomizableDensityBasedClusterer [260] Overfull \hbox (3.24855pt too wide) in paragraph at lines 116--118 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.c lusterers.AbstractClustererTest [261] Overfull \hbox (0.3597pt too wide) in paragraph at lines 137--140 \OT1/cmr/m/n/10 The an-ces-tor for all eval-u-a-tors is the \OT1/cmtt/m/n/10 we ka.attributeSelection.ASEvaluation Underfull \hbox (badness 10000) in paragraph at lines 137--140 [262] Overfull \hbox (10.55435pt too wide) in paragraph at lines 189--192 \OT1/cmr/m/n/10 The an-ces-tor for all search al-go-rithms is the \OT1/cmtt/m/n /10 weka.attributeSelection.ASSearch Underfull \hbox (badness 10000) in paragraph at lines 189--192 Overfull \hbox (45.24818pt too wide) in paragraph at lines 216--220 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ttributeSelection.AbstractEvaluatorTest [263] Overfull \hbox (5.08264pt too wide) in paragraph at lines 228--235 \OT1/cmr/m/n/10 can also im-ple-ment a meta-associator, de-rived from \OT1/cmtt /m/n/10 SingleAssociatorEnhancer\OT1/cmr/m/n/10 . Overfull \hbox (1.49698pt too wide) in paragraph at lines 258--258 [] \OT1/cmtt/m/n/10 public void buildAssociations(Instances data) throws Excep tion {[] [264] Overfull \hbox (1.49698pt too wide) in paragraph at lines 283--283 [] \OT1/cmtt/m/n/10 AbstractAssociator.runAssociator(new FunkyAssociator(), args);[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 290--290 [] \OT1/cmtt/m/n/10 weka.associations.CheckAssociator -W classname [further op tions][] ) Overfull \hbox (18.99841pt too wide) in paragraph at lines 291--62 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ssociations.AbstractAssociatorTest [265] (./extending_explorer.tex Overfull \hbox (11.74733pt too wide) in paragraph at lines 41--44 []\OT1/cmtt/m/n/10 weka.gui.explorer.Explorer.CapabilitiesFilterChangeListener Overfull \hbox (18.02759pt too wide) in paragraph at lines 45--47 []\OT1/cmr/m/n/10 adding the class-name of your class to the Tabs prop-erty in the \OT1/cmtt/m/n/10 Explorer.props Overfull \hbox (68.49664pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "SQL"; // what's displayed as tab-title, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "Retrieving data from databases"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] [266] Overfull \vbox (91.59024pt too high) has occurred while \output is active [267] Overfull \hbox (31.74696pt too wide) in paragraph at lines 138--138 [] \OT1/cmtt/m/n/10 /** the Load button - makes the data available in the Exp lorer */[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 Instances data = query.retrieveInstances(m_Viewer.g etQuery());[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \vbox (69.0pt too high) has occurred while \output is active [268] [269] Overfull \hbox (68.49664pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "DataGeneration"; // what's displayed as tab-ti tle, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "Generating artificial datasets"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] Overfull \vbox (92.50687pt too high) has occurred while \output is active [270] Overfull \hbox (89.49646pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected GenericObjectEditor m_GeneratorEditor = new Gen ericObjectEditor();[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected JButton m_ButtonGenerate = new JButton("Generat e");[] Overfull \hbox (84.2465pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator generator = (DataGenerator) m_Generator Editor.getValue();[] Overfull \hbox (78.99655pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 String cname = generator.getClass().getName().replace All(".*\\.", "");[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 cmd += " "+Utils.joinOptions(((OptionHandler)genera tor).getOptions());[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator.makeData(generator, generator.getOpti ons());[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (48.0pt too high) has occurred while \output is active [271] Overfull \hbox (84.2465pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 Instances data = new Instances(new StringReader(m_O utput.getText()));[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (81.85202pt too high) has occurred while \output is active [272] Overfull \vbox (57.81944pt too high) has occurred while \output is active [273] Overfull \hbox (34.60944pt too wide) in paragraph at lines 418--422 \OT1/cmr/m/n/10 home di-rec-tory) un-der the key \OT1/cmtt/m/n/10 weka.gui.visu alize.plugins.VisualizePlugin\OT1/cmr/m/n/10 . [274] [275] )) [276] Chapter 18. (./technical_documentation.tex Underfull \hbox (badness 10000) in paragraph at lines 21--22 [277] Underfull \hbox (badness 10000) in paragraph at lines 81--82 Underfull \hbox (badness 10000) in paragraph at lines 83--84 Underfull \hbox (badness 10000) in paragraph at lines 85--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 96--97 Underfull \hbox (badness 10000) in paragraph at lines 98--99 Underfull \hbox (badness 10000) in paragraph at lines 104--105 Underfull \hbox (badness 10000) in paragraph at lines 106--107 Overfull \hbox (95.24629pt too wide) in paragraph at lines 114--115 [][][]\OT1/cmtt/m/n/10 export CLASSPATH=$CLASSPATH:/home/johndoe/jars/mysql-con nector-java-5.1.7-bin.jar Overfull \hbox (95.24629pt too wide) in paragraph at lines 120--121 [][][]\OT1/cmtt/m/n/10 setenv CLASSPATH $CLASSPATH:/home/johndoe/jars/mysql-con nector-java-5.1.7-bin.jar [278] Underfull \hbox (badness 10000) in paragraph at lines 141--143 Underfull \hbox (badness 10000) in paragraph at lines 146--147 Underfull \hbox (badness 10000) in paragraph at lines 148--149 Underfull \hbox (badness 10000) in paragraph at lines 150--151 Underfull \hbox (badness 10000) in paragraph at lines 152--154 Underfull \hbox (badness 10000) in paragraph at lines 163--165 Underfull \hbox (badness 10000) in paragraph at lines 170--176 [279] Overfull \hbox (7.98488pt too wide) in paragraph at lines 177--178 \OT1/cmr/m/n/10 Here's once again how you start the Weka Main-GUI \OT1/cmr/bx/n /10 with \OT1/cmr/m/n/10 your cur-rent [][]\OT1/cmtt/m/n/10 CLASSPATH Overfull \hbox (0.24724pt too wide) in paragraph at lines 181--182 [][]\OT1/cmtt/m/n/10 java -Xmx128m -classpath "%CLASSPATH%;weka.jar" weka.gui.M ain Underfull \hbox (badness 10000) in paragraph at lines 187--188 Underfull \hbox (badness 10000) in paragraph at lines 189--190 Underfull \hbox (badness 10000) in paragraph at lines 210--211 Underfull \hbox (badness 10000) in paragraph at lines 212--213 Underfull \hbox (badness 10000) in paragraph at lines 214--215 Overfull \hbox (37.9968pt too wide) in paragraph at lines 216--217 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 216--217 Underfull \hbox (badness 10000) in paragraph at lines 219--220 [280] Underfull \hbox (badness 10000) in paragraph at lines 223--224 Overfull \hbox (43.24675pt too wide) in paragraph at lines 225--226 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 245--246 [281] Overfull \hbox (14.55481pt too wide) in paragraph at lines 265--274 \OT1/cmr/m/n/10 run-time (rather than us-ing only those spec-i-fied in the [][] \OT1/cmtt/m/n/10 GenericObjectEditor.props Underfull \hbox (badness 10000) in paragraph at lines 300--306 [282] Overfull \vbox (24.59024pt too high) has occurred while \output is active [283] Underfull \hbox (badness 10000) in paragraph at lines 375--380 Underfull \hbox (badness 10000) in paragraph at lines 381--382 Underfull \hbox (badness 10000) in paragraph at lines 383--384 Underfull \hbox (badness 10000) in paragraph at lines 385--386 Overfull \hbox (3.66528pt too wide) in paragraph at lines 387--390 \OT1/cmr/m/n/10 Where the [][]\OT1/cmtt/m/n/10 []\OT1/cmr/m/n/10 cor-re-s ponds to a key in the [][]\OT1/cmtt/m/n/10 GenericPropertiesCreator.props Overfull \hbox (64.49643pt too wide) in paragraph at lines 412--412 []\OT1/cmtt/m/n/10 # exclude all ResultListeners that also implement the Result Producer interface[] [284] Underfull \hbox (badness 10000) in paragraph at lines 416--427 Overfull \hbox (53.24666pt too wide) in paragraph at lines 428--429 [][][]\OT1/cmtt/m/n/10 java -classpath "/development:/distribution/weka.jar" we ka.gui.GUIChooser Underfull \hbox (badness 10000) in paragraph at lines 428--429 [285] Underfull \hbox (badness 10000) in paragraph at lines 456--457 [286] [287] Underfull \hbox (badness 10000) in paragraph at lines 493--494 Underfull \hbox (badness 10000) in paragraph at lines 495--496 Underfull \hbox (badness 10000) in paragraph at lines 497--498 Underfull \hbox (badness 10000) in paragraph at lines 520--524 [288] Overfull \hbox (17.24684pt too wide) in paragraph at lines 567--567 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 574--577 Underfull \hbox (badness 10000) in paragraph at lines 577--585 [289] Underfull \hbox (badness 10000) in paragraph at lines 586--592 Overfull \hbox (21.24706pt too wide) in paragraph at lines 600--600 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 606--611 Overfull \hbox (26.49701pt too wide) in paragraph at lines 615--615 [] \OT1/cmtt/m/n/10 [] [290] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (32.9956pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (37.72055pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (9.37088pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Underfull \hbox (badness 10000) in paragraph at lines 663--668 [291] Underfull \hbox (badness 10000) in paragraph at lines 722--723 Underfull \hbox (badness 10000) in paragraph at lines 724--725 [292] Overfull \hbox (43.80186pt too wide) in paragraph at lines 749--750 []\OT1/cmr/m/n/10 The DTD for KOML can be found at [][][][] Underfull \hbox (badness 10000) in paragraph at lines 749--750 Underfull \hbox (badness 10000) in paragraph at lines 751--752 Underfull \hbox (badness 10000) in paragraph at lines 753--754 Overfull \hbox (75.44197pt too wide) in paragraph at lines 756--759 \OT1/cmr/m/n/10 put file (see op-tions of [][]\OT1/cmtt/m/n/10 weka.experiment. Experiment []\OT1/cmr/m/n/10 and [][]\OT1/cmtt/m/n/10 weka.experiment.RemoteExp eriment Underfull \hbox (badness 10000) in paragraph at lines 783--790 Overfull \hbox (3.01225pt too wide) in paragraph at lines 799--805 \OT1/cmr/m/n/10 The GraphVi-su-al-izer ([][]\OT1/cmtt/m/n/10 weka.gui.graphvisu alizer.GraphVisualizer[]\OT1/cmr/m/n/10 ) can save [293] Overfull \hbox (17.24684pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (11.99689pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] ) [294] Chapter 19. (./other_resources.tex Underfull \hbox (badness 10000) in paragraph at lines 51--56 Underfull \hbox (badness 10000) in paragraph at lines 57--58 [295] Underfull \hbox (badness 10000) in paragraph at lines 65--68 Underfull \hbox (badness 10000) in paragraph at lines 91--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 106--108 Underfull \vbox (badness 1371) has occurred while \output is active [296] Overfull \hbox (5.99707pt too wide) in paragraph at lines 109--110 [][][]\OT1/cmtt/m/n/10 java weka.core.converters.CSVLoader filename.csv > filen ame.arff Underfull \hbox (badness 10000) in paragraph at lines 109--110 Underfull \hbox (badness 10000) in paragraph at lines 112--114 Underfull \hbox (badness 10000) in paragraph at lines 115--116 Underfull \hbox (badness 10000) in paragraph at lines 123--126 Underfull \hbox (badness 10000) in paragraph at lines 127--128 Overfull \hbox (16.19777pt too wide) in paragraph at lines 132--138 \OT1/cmr/m/n/10 Get-ting [][]\OT1/cmtt/m/n/10 java.lang.NoClassDefFoundError [] \OT1/cmr/m/n/10 ex-cep-tions? Most likely your \OT1/cmr/bx/n/10 CLASS- Underfull \hbox (badness 10000) in paragraph at lines 132--138 Underfull \hbox (badness 10000) in paragraph at lines 139--140 Underfull \hbox (badness 10000) in paragraph at lines 141--142 Underfull \hbox (badness 10000) in paragraph at lines 143--144 [297] Underfull \hbox (badness 10000) in paragraph at lines 145--148 Underfull \hbox (badness 10000) in paragraph at lines 149--150 Underfull \hbox (badness 10000) in paragraph at lines 159--162 [298] Overfull \hbox (69.74638pt too wide) in paragraph at lines 236--236 []\OT1/cmtt/m/n/10 /usr/share/themes/Mist/gtk-2.0/gtkrc:48: Engine "mist" is un supported, ignoring[] Overfull \hbox (153.74565pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at weka.gui.explorer.PreprocessPanel.addPropertyChang eListener(PreprocessPanel.java:519)[] Overfull \hbox (95.99615pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installListene rs(SynthPanelUI.java:49)[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installUI(Synt hPanelUI.java:38)[] Underfull \hbox (badness 10000) in paragraph at lines 245--247 Underfull \hbox (badness 10000) in paragraph at lines 248--249 Underfull \hbox (badness 10000) in paragraph at lines 250--251 Underfull \hbox (badness 10000) in paragraph at lines 252--253 Underfull \hbox (badness 10000) in paragraph at lines 255--256 [299] Underfull \hbox (badness 10000) in paragraph at lines 257--258 Overfull \hbox (9.16362pt too wide) in paragraph at lines 264--265 []\OT1/cmr/m/n/10 Java VM op-tions ([][][][]) ) (./bibliography.tex [300] Underfull \hbox (badness 3514) in paragraph at lines 31--35 []\OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 -- A col-lec-tion of ex-am-p le classes, as part of Underfull \hbox (badness 5119) in paragraph at lines 31--35 \OT1/cmr/m/n/10 an ANT project, in-cluded in the WEKA snap-shots (avail-able Underfull \hbox (badness 10000) in paragraph at lines 31--35 \OT1/cmr/m/n/10 for down-load on the home-page) or di-rectly from sub-ver-sion Overfull \hbox (64.80228pt too wide) in paragraph at lines 31--35 [][][][] Underfull \vbox (badness 10000) has occurred while \output is active [301] Overfull \vbox (45.33775pt too high) has occurred while \output is active [302] Overfull \hbox (22.2144pt too wide) in paragraph at lines 103--106 []\OT1/cmr/m/n/9 Cozman. See [][][][] ) [303] (./manual.aux) ) (see the transcript file for additional information) Output written on manual.dvi (303 pages, 966804 bytes). Transcript written on manual.log. make[1]: Leaving directory '/build/weka-NO4D3r/weka-3.6.14' dh_auto_test -i create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep dh binary-indep dh_testroot -i dh_prep -i debian/rules override_dh_auto_install make[1]: Entering directory '/build/weka-NO4D3r/weka-3.6.14' install -m644 -D dist/weka.jar debian/weka/usr/share/java/weka-3.6.14.jar dh_link -pweka /usr/share/java/weka-3.6.14.jar /usr/share/java/weka.jar #main overview page install -m755 -d debian/weka-doc/usr/share/doc/weka-doc install -m644 documentation.css documentation.html weka.gif -t debian/weka-doc/usr/share/doc/weka-doc/ #javadoc cp -r doc debian/weka-doc/usr/share/doc/weka-doc/ #pdf's install -m644 wekadocs/manual/manual.pdf debian/weka-doc/usr/share/doc/weka-doc/WekaManual.pdf make[1]: Leaving directory '/build/weka-NO4D3r/weka-3.6.14' dh_install -i dh_installdocs -i dh_installchangelogs -i dh_installexamples -i dh_installman -i dh_perl -i dh_link -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dpkg-gencontrol: warning: Depends field of package weka: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'weka' in '../weka_3.6.14-2_all.deb'. dpkg-deb: building package 'weka-doc' in '../weka-doc_3.6.14-2_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../weka_3.6.14-2_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/weka-NO4D3r /tmp/weka-3.6.14-2dhv76pzl I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_builduser W: deleting files in /tmp: hsperfdata_root W: deleting files in /tmp: texfonts I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.dhwxkcUbW6... I: success in 1614.7194 seconds md5: Value of 'md5' differs for weka-doc_3.6.14-2_all.deb md5: Size differs for weka-doc_3.6.14-2_all.deb md5: weka_3.6.14-2_all.deb: OK sha1: Value of 'sha1' differs for weka-doc_3.6.14-2_all.deb sha1: Size differs for weka-doc_3.6.14-2_all.deb sha1: weka_3.6.14-2_all.deb: OK sha256: Value of 'sha256' differs for weka-doc_3.6.14-2_all.deb sha256: Size differs for weka-doc_3.6.14-2_all.deb sha256: weka_3.6.14-2_all.deb: OK Checksums: FAIL diffoscope run passed