Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/v/vsearch/vsearch_2.21.1-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/vsearch-2.21.1-11m5viobd/vsearch_2.21.1-1_amd64.buildinfo Get source package info: vsearch=2.21.1-1 Source URL: http://snapshot.notset.fr/mr/package/vsearch/2.21.1-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.50.20220106-2 binutils-common=2.37.50.20220106-2 binutils-x86-64-linux-gnu=2.37.50.20220106-2 bsdextrautils=2.37.2-6 bsdutils=1:2.37.2-6 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-14 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.5-1 dh-autoreconf=20 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fontconfig-config=2.13.1-4.3 fonts-urw-base35=20200910-1 g++=4:11.2.0-2 g++-11=11.2.0-14 gcc=4:11.2.0-2 gcc-11=11.2.0-14 gcc-11-base=11.2.0-14 gettext=0.21-4 gettext-base=0.21-4 ghostscript=9.55.0~dfsg-3 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-14 libatomic1=11.2.0-14 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libavahi-client3=0.8-5 libavahi-common-data=0.8-5 libavahi-common3=0.8-5 libbinutils=2.37.50.20220106-2 libblkid1=2.37.2-6 libbrotli1=1.0.9-2+b3 libbz2-1.0=1.0.8-5 libbz2-dev=1.0.8-5 libc-bin=2.33-3 libc-dev-bin=2.33-3 libc6=2.33-3 libc6-dev=2.33-3 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-14 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1 libcrypt1=1:4.4.27-1 libctf-nobfd0=2.37.50.20220106-2 libctf0=2.37.50.20220106-2 libcups2=2.3.3op2-7 libdb5.3=5.3.28+dfsg1-0.8 libdbus-1-3=1.12.20-3 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdeflate0=1.9-1 libdpkg-perl=1.21.1 libelf1=0.186-1 libexpat1=2.4.3-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libfontconfig1=2.13.1-4.3 libfreetype6=2.11.1+dfsg-1 libgcc-11-dev=11.2.0-14 libgcc-s1=11.2.0-14 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-5 libgomp1=11.2.0-14 libgpg-error0=1.43-3 libgs9=9.55.0~dfsg-3 libgs9-common=9.55.0~dfsg-3 libgssapi-krb5-2=1.18.3-7 libhogweed6=3.7.3-1 libicu67=67.1-7 libidn12=1.38-4 libidn2-0=2.3.2-2 libijs-0.35=0.35-15 libisl23=0.24-2 libitm1=11.2.0-14 libjbig0=2.1-3.1+b2 libjbig2dec0=0.19-3 libjpeg62-turbo=1:2.1.2-1 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblcms2-2=2.12~rc1-2 liblsan0=11.2.0-14 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmount1=2.37.2-6 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libnettle8=3.7.3-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopenjp2-7=2.4.0-6 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpaper1=1.1.28+b1 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.5-1 libpng16-16=1.6.37-3 libquadmath0=11.2.0-14 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-6 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-14 libstdc++6=11.2.0-14 libsub-override-perl=0.09-2 libsystemd0=250.3-1 libtasn1-6=4.18.0-4 libtiff5=4.3.0-2 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-14 libubsan1=11.2.0-14 libuchardet0=0.0.7-1 libudev1=250.3-1 libunistring2=0.9.10-6 libuuid1=2.37.2-6 libwebp6=0.6.1-2.1 libxml2=2.9.12+dfsg-5+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.15-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-4 markdown=1.0.1-10.1 mawk=1.3.4.20200120-2 ncurses-base=6.3-2 ncurses-bin=6.3-2 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 poppler-data=0.4.11-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 time=1.9-0.1 ucf=3.0043 util-linux=2.37.2-6 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220124T035008Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220124T035008Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220129T151113Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220119T212311Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d vsearch=2.21.1-1 && mkdir -p /build/vsearch-iW5NsO && dpkg-source --no-check -x /*.dsc /build/vsearch-iW5NsO/vsearch-2.21.1 && chown -R builduser:builduser /build/vsearch-iW5NsO" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/vsearch-iW5NsO/vsearch-2.21.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1642849862" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/vsearch-iW5NsO /tmp/vsearch-2.21.1-11m5viobd bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220119T212311Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.INFaL4G9GG as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.INFaL4G9GG Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220119T212311Z unstable/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220119T212311Z unstable/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (1007 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4681 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-3) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220124T035008Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220124T035008Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220129T151113Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220119T212311Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.INFaL4G9GG Get:1 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220129T151113Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220119T212311Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main Sources [11.8 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220129T151113Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220129T151113Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220129T151113Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220129T151113Z unstable/main amd64 Packages [12.1 MB] Fetched 35.3 MB in 29s (1208 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.INFaL4G9GG I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d vsearch=2.21.1-1 && mkdir -p /build/vsearch-iW5NsO && dpkg-source --no-check -x /*.dsc /build/vsearch-iW5NsO/vsearch-2.21.1 && chown -R builduser:builduser /build/vsearch-iW5NsO"' exec /tmp/mmdebstrap.INFaL4G9GG Reading package lists... NOTICE: 'vsearch' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/vsearch.git Please use: git clone https://salsa.debian.org/med-team/vsearch.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1897 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main vsearch 2.21.1-1 (dsc) [2253 B] Get:2 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main vsearch 2.21.1-1 (tar) [264 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220124T035008Z bookworm/main vsearch 2.21.1-1 (diff) [1631 kB] Fetched 1897 kB in 2s (1241 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'vsearch_2.21.1-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting vsearch in /build/vsearch-iW5NsO/vsearch-2.21.1 dpkg-source: info: unpacking vsearch_2.21.1.orig.tar.gz dpkg-source: info: unpacking vsearch_2.21.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying sysconf_memory_sizing.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/vsearch-iW5NsO/vsearch-2.21.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1642849862" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.INFaL4G9GG dpkg-buildpackage: info: source package vsearch dpkg-buildpackage: info: source version 2.21.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1' dh_clean rm -rf data/simm if [ -d test ] ; then find test -mindepth 1 -not -name '*.sh' -delete ; fi rm -f README.html data/README.html rm -f *.out make[1]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:85: installing './compile' configure.ac:6: installing './config.guess' configure.ac:6: installing './config.sub' configure.ac:7: installing './install-sh' configure.ac:7: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for ranlib... ranlib checking for pthread_create in -lpthread... yes checking for dlopen in -ldl... yes checking for GetProcessMemoryInfo in -lpsapi... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for getopt.h... yes checking for fcntl.h... yes checking for float.h... yes checking for regex.h... yes checking for ctype.h... yes checking for locale.h... yes checking for limits.h... yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for dlfcn.h... yes checking for pthread.h... yes checking for inline... inline checking for size_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for GNU libc compatible malloc... yes checking for working strtod... yes checking for working alloca.h... yes checking for alloca... yes checking for GNU libc compatible realloc... yes checking for memmove... yes checking for memcpy... yes checking for posix_memalign... yes checking for gettimeofday... yes checking for localtime... yes checking for memchr... yes checking for memset... yes checking for pow... yes checking for regcomp... yes checking for strcasecmp... yes checking for strchr... yes checking for strcspn... yes checking for sysinfo... yes checking for bzlib.h... yes checking for zlib.h... yes checking for ps2pdf... yes checking for windows.h... no checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating config.h config.status: executing depfiles commands debian/rules override_dh_auto_build make[1]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1' dh_auto_build make -j10 make[2]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1' make all-recursive make[3]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1' Making all in src make[4]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o align.o align.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o align_simd.o align_simd.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o allpairs.o allpairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o arch.o arch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o attributes.o attributes.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o bitmap.o bitmap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o chimera.o chimera.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare 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-Wformat -Werror=format-security -flto -std=c++11 -c -o fastq.o fastq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastqjoin.o fastqjoin.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastqops.o fastqops.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o fastx.o fastx.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o filter.o filter.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o getseq.o getseq.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o kmerhash.o kmerhash.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o linmemalign.o linmemalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o maps.o maps.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o mask.o mask.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o md5.o md5.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o mergepairs.o mergepairs.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o minheap.o minheap.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o msa.o msa.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o search.o search.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o searchcore.o searchcore.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o searchexact.o searchexact.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sffconvert.o sffconvert.cc gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sha1.o sha1.c g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o showalign.o showalign.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o shuffle.o shuffle.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sintax.o sintax.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sortbylength.o sortbylength.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o sortbysize.o sortbysize.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 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unique.o unique.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o userfields.o userfields.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o util.o util.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -c -o vsearch.o vsearch.cc g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wsign-compare -march=x86-64 -mtune=generic 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since `D' is the default (see `U') ranlib libcityhash.a rm -f libcpu_ssse3.a ar cru libcpu_ssse3.a libcpu_ssse3_a-cpu.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcpu_ssse3.a rm -f libcpu_sse2.a ar cru libcpu_sse2.a libcpu_sse2_a-cpu.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcpu_sse2.a g++ -Wall -Wsign-compare -march=x86-64 -mtune=generic -std=c++11 -g -O2 -ffile-prefix-map=/build/vsearch-iW5NsO/vsearch-2.21.1=. -fstack-protector-strong -Wformat -Werror=format-security -flto -std=c++11 -Wl,-z,relro -Wl,-z,now -flto -o ../bin/vsearch align.o align_simd.o allpairs.o arch.o attributes.o bitmap.o chimera.o cluster.o cut.o db.o dbhash.o dbindex.o derep.o dynlibs.o eestats.o fa2fq.o fasta.o fastq.o fastqjoin.o fastqops.o fastx.o filter.o getseq.o kmerhash.o linmemalign.o maps.o mask.o md5.o mergepairs.o minheap.o msa.o orient.o otutable.o rerep.o results.o search.o searchcore.o searchexact.o sffconvert.o sha1.o showalign.o shuffle.o sintax.o sortbylength.o sortbysize.o subsample.o tax.o udb.o unique.o userfields.o util.o vsearch.o libcityhash.a libcpu_ssse3.a libcpu_sse2.a -ldl -lpthread make[4]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1/src' Making all in man make[4]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1/man' sed -e 's/\\-/-/g' vsearch.1 | \ iconv -f UTF-8 -t ISO-8859-1 | \ groff -W space -t -m mandoc -T ps -P -pa4 | ps2pdf - vsearch_manual.pdf make[4]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1/man' make[4]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1' make[4]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1' make[3]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1' make[2]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1' markdown README.md > README.html # Remove redundant travis-build URL sed -i 1d README.html make[1]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j10 install DESTDIR=/build/vsearch-iW5NsO/vsearch-2.21.1/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1' Making install in src make[2]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1/src' make[3]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/build/vsearch-iW5NsO/vsearch-2.21.1/debian/tmp/usr/bin' /usr/bin/install -c ../bin/vsearch '/build/vsearch-iW5NsO/vsearch-2.21.1/debian/tmp/usr/bin' make[3]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1/src' make[2]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1/src' Making install in man make[2]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1/man' make[3]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/vsearch-iW5NsO/vsearch-2.21.1/debian/tmp/usr/share/doc/vsearch' /bin/mkdir -p '/build/vsearch-iW5NsO/vsearch-2.21.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 vsearch_manual.pdf '/build/vsearch-iW5NsO/vsearch-2.21.1/debian/tmp/usr/share/doc/vsearch' /usr/bin/install -c -m 644 vsearch.1 '/build/vsearch-iW5NsO/vsearch-2.21.1/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1/man' make[2]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1/man' make[2]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1' make[3]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1' make[2]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1' make[1]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1' debian/rules override_dh_install make[1]: Entering directory '/build/vsearch-iW5NsO/vsearch-2.21.1' dh_install if [ -d test ] ; then \ # tweak path tp vsearch binary in test scripts \ mkdir -p /build/vsearch-iW5NsO/vsearch-2.21.1/debian/vsearch/usr/share/doc/vsearch/test ; \ for tst in test/*.sh ; do sed 's?\.\./bin/vsearch?/usr/bin/vsearch?' ${tst} > /build/vsearch-iW5NsO/vsearch-2.21.1/debian/vsearch/usr/share/doc/vsearch/${tst} ; done ; \ fi make[1]: Leaving directory '/build/vsearch-iW5NsO/vsearch-2.21.1' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package vsearch-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'vsearch' in '../vsearch_2.21.1-1_amd64.deb'. dpkg-deb: building package 'vsearch-dbgsym' in '../vsearch-dbgsym_2.21.1-1_amd64.deb'. dpkg-deb: building package 'vsearch-examples' in '../vsearch-examples_2.21.1-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../vsearch_2.21.1-1_amd64.buildinfo dpkg-genchanges --build=any -O../vsearch_2.21.1-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/vsearch-iW5NsO /tmp/vsearch-2.21.1-11m5viobd I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.INFaL4G9GG... I: success in 433.6655 seconds md5: vsearch-dbgsym_2.21.1-1_amd64.deb: OK md5: vsearch-examples_2.21.1-1_amd64.deb: OK md5: vsearch_2.21.1-1_amd64.deb: OK sha1: vsearch-dbgsym_2.21.1-1_amd64.deb: OK sha1: vsearch-examples_2.21.1-1_amd64.deb: OK sha1: vsearch_2.21.1-1_amd64.deb: OK sha256: vsearch-dbgsym_2.21.1-1_amd64.deb: OK sha256: vsearch-examples_2.21.1-1_amd64.deb: OK sha256: vsearch_2.21.1-1_amd64.deb: OK Checksums: OK