Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/v/votca-csg/votca-csg_2021.2-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/votca-csg-2021.2-1iusbrsdb/votca-csg_2021.2-1_all.buildinfo Get source package info: votca-csg=2021.2-1 Source URL: http://snapshot.notset.fr/mr/package/votca-csg/2021.2-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.4-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3+b2 bash-completion=1:2.11-4 binutils=2.37-7 binutils-common=2.37-7 binutils-x86-64-linux-gnu=2.37-7 bsdextrautils=2.37.2-3 bsdutils=1:2.37.2-3 build-essential=12.9 bzip2=1.0.8-4 cmake=3.21.3-4 cmake-data=3.21.3-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.3.0-11 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-elpa-helper=2.0.9 dh-python=4.20201102+nmu1 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.3.0-11 gcc=4:10.2.1-1 gcc-10=10.3.0-11 gcc-10-base=10.3.0-11 gcc-11-base=11.2.0-8 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 icu-devtools=67.1-7 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2+b1 libasan6=11.2.0-8 libatomic1=11.2.0-8 libattr1=1:2.5.1-1 libaudit-common=1:3.0.5-1 libaudit1=1:3.0.5-1 libbinutils=2.37-7 libblas3=3.10.0-1 libblkid1=2.37.2-3 libboost-filesystem-dev=1.74.0.3 libboost-filesystem1.74-dev=1.74.0-11 libboost-filesystem1.74.0=1.74.0-11 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-11 libboost-program-options1.74.0=1.74.0-11 libboost-regex-dev=1.74.0.3 libboost-regex1.74-dev=1.74.0-11 libboost-regex1.74.0=1.74.0-11 libboost-system-dev=1.74.0.3 libboost-system1.74-dev=1.74.0-11 libboost-system1.74.0=1.74.0-11 libboost1.74-dev=1.74.0-11 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-8 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-7 libctf0=2.37-7 libcurl4=7.74.0-1.3+b1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.2 libdpkg-perl=1.20.9 libeigen3-dev=3.3.9-2 libelf1=0.185-2 libexpat1=2.4.1-2+b1 libexpat1-dev=2.4.1-2+b1 libffi8=3.4.2-2 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfile-stripnondeterminism-perl=1.12.0-1 libgcc-10-dev=10.3.0-11 libgcc-s1=11.2.0-8 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.21-1 libgdbm6=1.21-1 libgfortran5=11.2.0-8 libglib2.0-0=2.70.0-1+b1 libgmp10=2:6.2.1+dfsg-2 libgnutls30=3.7.2-2 libgomp1=11.2.0-8 libgpg-error0=1.42-3 libgromacs-dev=2021.3-3 libgromacs6=2021.3-3 libgsl-dev=2.7+dfsg-2 libgsl25=2.7+dfsg-2 libgslcblas0=2.7+dfsg-2 libgssapi-krb5-2=1.18.3-7 libhogweed6=3.7.3-1 libhwloc15=2.5.0+dfsg-2 libicu-dev=67.1-7 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.23-1 libitm1=11.2.0-8 libjsoncpp24=1.9.4-5 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-1 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-8 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.37.2-3 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.2+20210905-1 libncursesw6=6.2+20210905-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-3 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.3-1 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libpython3-stdlib=3.9.2-3 libpython3.9-minimal=3.9.7-4 libpython3.9-stdlib=3.9.7-4 libquadmath0=11.2.0-8 libreadline8=8.1-2 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.2-2 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.37.2-3 libsqlite3-0=3.36.0-2 libsqlite3-dev=3.36.0-2 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-10-dev=10.3.0-11 libstdc++6=11.2.0-8 libsub-override-perl=0.09-2 libsystemd0=247.9-4 libtasn1-6=4.17.0-2 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-8 libubsan1=11.2.0-8 libuchardet0=0.0.7-1 libudev1=247.9-4 libunistring2=0.9.10-6 libuuid1=2.37.2-3 libuv1=1.42.0-1 libvotca-tools-dev=2021.2-1 libvotca-tools2021=2021.2-1 libxml2=2.9.12+dfsg-5 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.14.9-2 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 python3=3.9.2-3 python3-distutils=3.9.7-1 python3-lib2to3=3.9.7-1 python3-minimal=3.9.2-3 python3-pkg-resources=52.0.0-4 python3.9=3.9.7-4 python3.9-minimal=3.9.7-4 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 txt2tags=3.4-3 tzdata=2021c-1 util-linux=2.37.2-3 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211016T025026Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211016T025026Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211022T144903Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211007T204219Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d votca-csg=2021.2-1 && mkdir -p /build/votca-csg-aBn8Zl && dpkg-source --no-check -x /*.dsc /build/votca-csg-aBn8Zl/votca-csg-2021.2 && chown -R builduser:builduser /build/votca-csg-aBn8Zl" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/votca-csg-aBn8Zl/votca-csg-2021.2 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1633879725" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/votca-csg-aBn8Zl /tmp/votca-csg-2021.2-1iusbrsdb bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211007T204219Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.Az264rSf8q as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.Az264rSf8q Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-3). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211007T204219Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211007T204219Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (660 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4667 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211016T025026Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211016T025026Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211022T144903Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211007T204219Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.Az264rSf8q Get:1 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm InRelease [128 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211022T144903Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20211007T204219Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm/main Sources [11.7 MB] Get:5 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm/main amd64 Packages [11.2 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20211022T144903Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20211022T144903Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20211022T144903Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20211022T144903Z unstable/main amd64 Packages [11.9 MB] Fetched 35.1 MB in 29s (1219 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.Az264rSf8q I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d votca-csg=2021.2-1 && mkdir -p /build/votca-csg-aBn8Zl && dpkg-source --no-check -x /*.dsc /build/votca-csg-aBn8Zl/votca-csg-2021.2 && chown -R builduser:builduser /build/votca-csg-aBn8Zl"' exec /tmp/mmdebstrap.Az264rSf8q Reading package lists... NOTICE: 'votca-csg' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/votca-csg.git Please use: git clone https://salsa.debian.org/debichem-team/votca-csg.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 10.3 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm/main votca-csg 2021.2-1 (dsc) [2871 B] Get:2 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm/main votca-csg 2021.2-1 (tar) [5942 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm/main votca-csg 2021.2-1 (tar) [4301 kB] Get:4 http://snapshot.notset.fr/archive/debian/20211016T025026Z bookworm/main votca-csg 2021.2-1 (diff) [5220 B] Fetched 10.3 MB in 8s (1273 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'votca-csg_2021.2-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting votca-csg in /build/votca-csg-aBn8Zl/votca-csg-2021.2 dpkg-source: info: unpacking votca-csg_2021.2.orig.tar.gz dpkg-source: info: unpacking votca-csg_2021.2.orig-tutorials.tar.gz dpkg-source: info: unpacking votca-csg_2021.2-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/votca-csg-aBn8Zl/votca-csg-2021.2 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1633879725" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.Az264rSf8q dpkg-buildpackage: info: source package votca-csg dpkg-buildpackage: info: source version 2021.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nicholas Breen dpkg-source --before-build . debian/rules clean dh clean --with bash-completion,python3 dh_clean debian/rules binary-indep dh binary-indep --with bash-completion,python3 dh_update_autotools_config -i dh_autoreconf -i debian/rules override_dh_auto_configure make[1]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2' dh_auto_configure -- -DLIB=lib/x86_64-linux-gnu cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DLIB=lib/x86_64-linux-gnu .. -- The CXX compiler identification is GNU 10.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found TXT2TAGS: /usr/bin/txt2tags -- Found UnixCommands: /bin/bash -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.53.0") found components: program_options filesystem system regex -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Eigen3: /usr/share/eigen3/cmake -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.53.0") found components: program_options -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Found FFTW3: /usr/lib/x86_64-linux-gnu/libfftw3.so -- Found VOTCA_TOOLS: /usr/lib/x86_64-linux-gnu/cmake/VOTCA_TOOLS -- Checking for module 'libgromacs_d' -- Found libgromacs_d, version 2021.3-Debian-2021.3-3 -- Checking for module 'libgromacs' -- Found libgromacs, version 2021.3-Debian-2021.3-3 -- Looking for c++ gmx_version in /usr/lib/x86_64-linux-gnu/libgromacs_d.so -- Looking for c++ gmx_version in /usr/lib/x86_64-linux-gnu/libgromacs_d.so - found -- Looking for c++ gmx_is_single_precision in /usr/lib/x86_64-linux-gnu/libgromacs_d.so -- Looking for c++ gmx_is_single_precision in /usr/lib/x86_64-linux-gnu/libgromacs_d.so - not found -- Looking for c++ gmx_is_double_precision in /usr/lib/x86_64-linux-gnu/libgromacs_d.so -- Looking for c++ gmx_is_double_precision in /usr/lib/x86_64-linux-gnu/libgromacs_d.so - found -- Found GROMACS: /usr/lib/x86_64-linux-gnu/libgromacs_d.so (found suitable version "2021.3", minimum required is "2018") CMake Warning at CMakeLists.txt:90 (message): Gromacs-2020 and above have no support for tabulated interactions, that are needed for coarse-graining (see and comment on https://gitlab.com/gromacs/gromacs/-/issues/1347) -- Could NOT find GMX (missing: GMX_EXECUTABLE) -- Looking for C++ include algorithm -- Looking for C++ include algorithm - found -- Looking for C++ include cassert -- Looking for C++ include cassert - found -- Looking for C++ include fstream -- Looking for C++ include fstream - found -- Looking for C++ include iomanip -- Looking for C++ include iomanip - found -- Looking for C++ include iostream -- Looking for C++ include iostream - found -- Looking for C++ include list -- Looking for C++ include list - found -- Looking for C++ include map -- Looking for C++ include map - found -- Looking for C++ include numeric -- Looking for C++ include numeric - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for C++ include stdexcept -- Looking for C++ include stdexcept - found -- Looking for C++ include string -- Looking for C++ include string - found -- Looking for C++ include vector -- Looking for C++ include vector - found -- Looking for C++ include cstdlib -- Looking for C++ include cstdlib - found -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS CXX) (found version "") -- Could NOT find LMP (missing: LMP_EXECUTABLE) -- The following features have been enabled: * BUILD_MANPAGES, Build manpages (disable for cross-compile) -- The following OPTIONAL packages have been found: * TXT2TAGS Used to build manpages * UnixCommands Used to build manpages -- The following RECOMMENDED packages have been found: * PkgConfig Used to detect fftw package Used to detect gromacs package * GROMACS (required version >= 2018) Used to read/write gromacs data files -- The following REQUIRED packages have been found: * boost_filesystem (required version == 1.74.0) * boost_system (required version == 1.74.0) * boost_regex (required version == 1.74.0) * Threads Used for thread parallelization * Eigen3 C++ vector data structures * boost_headers (required version == 1.74.0) * boost_program_options (required version == 1.74.0) * Boost (required version >= 1.53.0) Extended C++ libraries * VOTCA_TOOLS Votca base library -- The following features have been disabled: * ENABLE_TESTING, Enable unit tests * BUILD_CSGAPPS, Install extra app using csg -- The following RECOMMENDED packages have not been found: * HDF5 Used to read h5md data files -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu blhc: ignore-line-regexp: \s+C\+\+ vector data structures blhc: ignore-line-regexp: .*Looking for c\+\+ gmx.*libgromacs.* make[1]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2' dh_auto_build -i cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/votca-csg-aBn8Zl/votca-csg-2021.2 -B/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/CMakeFiles /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f share/man/CMakeFiles/votca-csg_manpage.dir/build.make share/man/CMakeFiles/votca-csg_manpage.dir/depend make -f scripts/CMakeFiles/help2t2t_build.dir/build.make scripts/CMakeFiles/help2t2t_build.dir/depend make -f src/libcsg/CMakeFiles/gitversion-csg.dir/build.make src/libcsg/CMakeFiles/gitversion-csg.dir/depend make -f scripts/CMakeFiles/csg_inverse_build.dir/build.make scripts/CMakeFiles/csg_inverse_build.dir/depend make -f scripts/CMakeFiles/csg_call_build.dir/build.make scripts/CMakeFiles/csg_call_build.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/share/man /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/share/man /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/share/man/CMakeFiles/votca-csg_manpage.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/scripts /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts/CMakeFiles/help2t2t_build.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg/CMakeFiles/gitversion-csg.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/scripts /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_inverse_build.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/scripts /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_call_build.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f share/man/CMakeFiles/votca-csg_manpage.dir/build.make share/man/CMakeFiles/votca-csg_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/help2t2t_build.dir/build.make scripts/CMakeFiles/help2t2t_build.dir/build make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/csg_inverse_build.dir/build.make scripts/CMakeFiles/csg_inverse_build.dir/build make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/csg_call_build.dir/build.make scripts/CMakeFiles/csg_call_build.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/libcsg/CMakeFiles/gitversion-csg.dir/build.make src/libcsg/CMakeFiles/gitversion-csg.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/cmake -DTOP_SOURCE_DIR="/build/votca-csg-aBn8Zl/votca-csg-2021.2" -DGIT_EXECUTABLE="" -P /build/votca-csg-aBn8Zl/votca-csg-2021.2/CMakeModules/gitversion.cmake [ 1%] Building votca-csg manpage cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/share/man && /usr/bin/txt2tags -q -t man -i /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/share/man/votca-csg.t2t -o /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/share/man/votca-csg.man [ 2%] Generating help2t2t, ALL [ 3%] Generating csg_inverse cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT="help2t2t.out" -DOUTPUT="help2t2t" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-aBn8Zl/votca-csg-2021.2" -P /build/votca-csg-aBn8Zl/votca-csg-2021.2/CMakeModules/gitscript.cmake cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT="csg_inverse.in2" -DOUTPUT="csg_inverse" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-aBn8Zl/votca-csg-2021.2" -P /build/votca-csg-aBn8Zl/votca-csg-2021.2/CMakeModules/gitscript.cmake [ 4%] Generating csg_call cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT="csg_call.in2" -DOUTPUT="csg_call" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-aBn8Zl/votca-csg-2021.2" -P /build/votca-csg-aBn8Zl/votca-csg-2021.2/CMakeModules/gitscript.cmake make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 4%] Built target votca-csg_manpage [ 4%] Built target gitversion-csg make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 4%] Built target csg_inverse_build make -f src/libcsg/CMakeFiles/votca_csg.dir/build.make src/libcsg/CMakeFiles/votca_csg.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg 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/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_inverse_manpage.dir/DependInfo.cmake --color= make -f src/libcsg/CMakeFiles/votca_csg.dir/build.make src/libcsg/CMakeFiles/votca_csg.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/scripts /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_call_manpage.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/csg_inverse_manpage.dir/build.make scripts/CMakeFiles/csg_inverse_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 5%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/csg_call_manpage.dir/build.make scripts/CMakeFiles/csg_call_manpage.dir/build cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o -MF CMakeFiles/votca_csg.dir/beadlist.cc.o.d -o CMakeFiles/votca_csg.dir/beadlist.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/beadlist.cc [ 5%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 6%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o [ 7%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadstructure.cc.o [ 8%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o [ 9%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o -MF CMakeFiles/votca_csg.dir/beadmotif.cc.o.d -o CMakeFiles/votca_csg.dir/beadmotif.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/beadmotif.cc cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o -MF CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o.d -o CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/beadmotifalgorithms.cc cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 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CMakeFiles/votca_csg.dir/beadstructure.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/beadstructure.cc [ 10%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o [ 11%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o -MF CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o.d -o CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/beadstructurealgorithms.cc cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/cgengine.cc.o -MF CMakeFiles/votca_csg.dir/cgengine.cc.o.d -o CMakeFiles/votca_csg.dir/cgengine.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/cgengine.cc cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o -MF CMakeFiles/votca_csg.dir/boundarycondition.cc.o.d -o CMakeFiles/votca_csg.dir/boundarycondition.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/boundarycondition.cc [ 12%] Generating csg_call.man [ 13%] Generating csg_inverse.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E env VOTCASHARE=/build/votca-csg-aBn8Zl/votca-csg-2021.2/share /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts/csg_call --help > csg_call.help cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E env VOTCASHARE=/build/votca-csg-aBn8Zl/votca-csg-2021.2/share /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts/csg_inverse --help > csg_inverse.help cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts/help2t2t csg_call.help > csg_call.t2t cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts/help2t2t csg_inverse.help > csg_inverse.t2t cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/scripts && /usr/bin/txt2tags -q -t man -i csg_inverse.t2t -o csg_inverse.man cd 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CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o.d -o CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/cgmoleculedef.cc make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 15%] Built target csg_call_manpage [ 16%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o -MF CMakeFiles/votca_csg.dir/csgapplication.cc.o.d -o CMakeFiles/votca_csg.dir/csgapplication.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/csgapplication.cc [ 17%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o -MF 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/build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/imcio.cc [ 19%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o -MF CMakeFiles/votca_csg.dir/map.cc.o.d -o CMakeFiles/votca_csg.dir/map.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/map.cc [ 20%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o -MF CMakeFiles/votca_csg.dir/molecule.cc.o.d -o CMakeFiles/votca_csg.dir/molecule.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/molecule.cc [ 21%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o -MF CMakeFiles/votca_csg.dir/nblist.cc.o.d -o CMakeFiles/votca_csg.dir/nblist.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/nblist.cc [ 21%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblist_3body.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/nblist_3body.cc.o -MF CMakeFiles/votca_csg.dir/nblist_3body.cc.o.d -o CMakeFiles/votca_csg.dir/nblist_3body.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/nblist_3body.cc [ 22%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o -MF CMakeFiles/votca_csg.dir/nblistgrid.cc.o.d -o CMakeFiles/votca_csg.dir/nblistgrid.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/nblistgrid.cc [ 23%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o -MF CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o.d -o CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/nblistgrid_3body.cc [ 24%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o -MF CMakeFiles/votca_csg.dir/nematicorder.cc.o.d -o CMakeFiles/votca_csg.dir/nematicorder.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/nematicorder.cc [ 25%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o -MF CMakeFiles/votca_csg.dir/openbox.cc.o.d -o CMakeFiles/votca_csg.dir/openbox.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/openbox.cc [ 26%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o -MF CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o.d -o CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/orthorhombicbox.cc [ 27%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o -MF CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o.d -o 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src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o -MF CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o.d -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionlj126.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/potentialfunctions/potentialfunctionlj126.cc [ 29%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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reproducible builds [-Wdate-time] 45 | " (compiled " __DATE__ ", " __TIME__ ")"; | ^~~~~~~~ [ 36%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o -c 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/build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/modules/io/dlpolytrajectoryreader.cc [ 38%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/libcsg/modules/io/dlpolytrajectorywriter.cc [ 39%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -MD -MT src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -MF CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o.d -o CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o -c 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CMakeFiles/votca_csg.dir/triclinicbox.cc.o CMakeFiles/votca_csg.dir/version.cc.o CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o /usr/lib/x86_64-linux-gnu/libgromacs_d.so /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.74.0 /usr/lib/x86_64-linux-gnu/libfftw3.so -lpthread cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/cmake -E cmake_symlink_library libvotca_csg.so.2021 libvotca_csg.so.2021 libvotca_csg.so make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 50%] Built target votca_csg make -f src/tools/CMakeFiles/csg_density.dir/build.make src/tools/CMakeFiles/csg_density.dir/depend make -f src/tools/CMakeFiles/csg_gmxtopol.dir/build.make src/tools/CMakeFiles/csg_gmxtopol.dir/depend make -f src/tools/CMakeFiles/csg_dlptopol.dir/build.make src/tools/CMakeFiles/csg_dlptopol.dir/depend make -f src/tools/CMakeFiles/csg_fmatch.dir/build.make src/tools/CMakeFiles/csg_fmatch.dir/depend make -f src/tools/CMakeFiles/csg_property.dir/build.make src/tools/CMakeFiles/csg_property.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_density.dir/DependInfo.cmake --color= make -f src/tools/CMakeFiles/csg_reupdate.dir/build.make src/tools/CMakeFiles/csg_reupdate.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd 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'/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_resample.dir/build.make src/tools/CMakeFiles/csg_resample.dir/build make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_map.dir/build.make src/tools/CMakeFiles/csg_map.dir/build make -f src/tools/CMakeFiles/csg_imc_solve.dir/build.make src/tools/CMakeFiles/csg_imc_solve.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' 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-I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/tools/CMakeFiles/csg_map.dir/csg_map.cc.o -MF CMakeFiles/csg_map.dir/csg_map.cc.o.d -o CMakeFiles/csg_map.dir/csg_map.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools/csg_map.cc cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -MF CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o.d -o CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools/csg_reupdate.cc [ 58%] Building CXX object src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o -MF CMakeFiles/csg_property.dir/csg_property.cc.o.d -o CMakeFiles/csg_property.dir/csg_property.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools/csg_property.cc [ 58%] Building CXX object src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -MF CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o.d -o CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools/csg_imc_solve.cc [ 59%] Linking CXX executable csg_property cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_property.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now 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src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csg_boltzmann /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 62%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o -MF CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o.d -o CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csg_boltzmann/bondedstatistics.cc [ 63%] Linking CXX executable csg_dump cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_dump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_dump.dir/csg_dump.cc.o -o csg_dump -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 63%] Built target csg_dump make -f src/csgapps/CMakeFiles/traj_force.dir/build.make src/csgapps/CMakeFiles/traj_force.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csgapps /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps/CMakeFiles/traj_force.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/csgapps/CMakeFiles/traj_force.dir/build.make src/csgapps/CMakeFiles/traj_force.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 64%] Building CXX object src/csgapps/CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/csgapps/CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o -MF CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o.d -o CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csgapps/traj_force/traj_force.cc [ 65%] Linking CXX executable csg_gmxtopol cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_gmxtopol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -o csg_gmxtopol -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 [ 66%] Linking CXX executable csg_map cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_map.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_map.dir/csg_map.cc.o -o csg_map -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 66%] Built target csg_map [ 67%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o -MF CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o.d -o CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csg_boltzmann/stdanalysis.cc make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 67%] Built target csg_gmxtopol [ 68%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -MF CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o.d -o CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csg_boltzmann/tabulatedpotential.cc [ 68%] Linking CXX executable csg_density cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_density.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_density.dir/csg_density.cc.o -o csg_density -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 [ 69%] Linking CXX executable csg_dlptopol cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_dlptopol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -o csg_dlptopol -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 69%] Built target csg_density make -f src/csgapps/CMakeFiles/sphericalorder.dir/build.make src/csgapps/CMakeFiles/sphericalorder.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csgapps /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps/CMakeFiles/sphericalorder.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/csgapps/CMakeFiles/sphericalorder.dir/build.make src/csgapps/CMakeFiles/sphericalorder.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 70%] Building CXX object src/csgapps/CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/csgapps/CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o -MF CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o.d -o CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csgapps/sphericalorder/sphericalorder.cc make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 70%] Built target csg_dlptopol [ 71%] Building CXX object src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/tools/CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -MF CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o.d -o CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools/csg_stat_imc.cc make -f src/csgapps/CMakeFiles/partial_rdf.dir/build.make src/csgapps/CMakeFiles/partial_rdf.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csgapps /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps/CMakeFiles/partial_rdf.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/csgapps/CMakeFiles/partial_rdf.dir/build.make src/csgapps/CMakeFiles/partial_rdf.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 71%] Building CXX object src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o -MF CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o.d -o CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csgapps/partial_rdf/partial_rdf.cc [ 72%] Linking CXX executable csg_imc_solve cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_imc_solve.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -o csg_imc_solve -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 72%] Built target csg_imc_solve make -f src/csgapps/CMakeFiles/part_dist.dir/build.make src/csgapps/CMakeFiles/part_dist.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csgapps /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu 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'/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csgapps /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps/CMakeFiles/orientcorr.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/csgapps/CMakeFiles/orientcorr.dir/build.make src/csgapps/CMakeFiles/orientcorr.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 75%] Building CXX object src/csgapps/CMakeFiles/orientcorr.dir/orientcorr/orientcorr.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps && 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/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/share/template/CMakeFiles/template_threaded.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f share/template/CMakeFiles/template_threaded.dir/build.make share/template/CMakeFiles/template_threaded.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 77%] Building CXX object share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/share/template && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o -MF CMakeFiles/template_threaded.dir/template_threaded.cc.o.d -o CMakeFiles/template_threaded.dir/template_threaded.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/share/template/template_threaded.cc [ 78%] Linking CXX executable traj_force/csg_traj_force cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/traj_force.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/traj_force.dir/traj_force/traj_force.cc.o -o traj_force/csg_traj_force -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 78%] Built target traj_force [ 79%] Building CXX object src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/csgapps/CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o -MF CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o.d -o CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csgapps/partial_rdf/rdf_calculator.cc [ 80%] Linking CXX executable sphericalorder/csg_sphericalorder cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphericalorder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/sphericalorder.dir/sphericalorder/sphericalorder.cc.o -o sphericalorder/csg_sphericalorder -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make -f share/template/CMakeFiles/template_serial.dir/build.make share/template/CMakeFiles/template_serial.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/share/template /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/share/template /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/share/template/CMakeFiles/template_serial.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f share/template/CMakeFiles/template_serial.dir/build.make share/template/CMakeFiles/template_serial.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 81%] Building CXX object share/template/CMakeFiles/template_serial.dir/template_serial.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/share/template && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT share/template/CMakeFiles/template_serial.dir/template_serial.cc.o -MF CMakeFiles/template_serial.dir/template_serial.cc.o.d -o CMakeFiles/template_serial.dir/template_serial.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/share/template/template_serial.cc make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 81%] Built target sphericalorder make -f src/tools/CMakeFiles/csg_density_manpage.dir/build.make src/tools/CMakeFiles/csg_density_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_density_manpage.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_density_manpage.dir/build.make src/tools/CMakeFiles/csg_density_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 82%] Generating csg_density.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && ./csg_density --help > csg_density.help cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_density.help > csg_density.t2t cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_density.t2t -o csg_density.man make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 82%] Built target csg_density_manpage make -f src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build.make src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build.make src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 83%] Generating csg_gmxtopol.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && ./csg_gmxtopol --help > csg_gmxtopol.help cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_gmxtopol.help > csg_gmxtopol.t2t cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_gmxtopol.t2t -o csg_gmxtopol.man make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 83%] Built target csg_gmxtopol_manpage make -f src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build.make src/tools/CMakeFiles/csg_dlptopol_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build.make src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 84%] Generating csg_dlptopol.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && ./csg_dlptopol --help > csg_dlptopol.help cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_dlptopol.help > csg_dlptopol.t2t cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_dlptopol.t2t -o csg_dlptopol.man [ 85%] Linking CXX executable part_dist/csg_part_dist cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/part_dist.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 85%] Built target csg_dlptopol_manpage make -f src/tools/CMakeFiles/csg_property_manpage.dir/build.make src/tools/CMakeFiles/csg_property_manpage.dir/depend /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/part_dist.dir/part_dist/part_dist.cc.o -o part_dist/csg_part_dist -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_property_manpage.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_property_manpage.dir/build.make src/tools/CMakeFiles/csg_property_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 86%] Generating csg_property.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && ./csg_property --help > csg_property.help cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_property.help > csg_property.t2t make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 86%] Built target part_dist make -f src/tools/CMakeFiles/csg_reupdate_manpage.dir/build.make src/tools/CMakeFiles/csg_reupdate_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_reupdate_manpage.dir/DependInfo.cmake --color= cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_property.t2t -o csg_property.man make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_reupdate_manpage.dir/build.make src/tools/CMakeFiles/csg_reupdate_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 87%] Generating csg_reupdate.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && ./csg_reupdate --help > csg_reupdate.help make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_reupdate.help > csg_reupdate.t2t [ 87%] Built target csg_property_manpage make -f src/tools/CMakeFiles/csg_resample_manpage.dir/build.make src/tools/CMakeFiles/csg_resample_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_resample_manpage.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_resample_manpage.dir/build.make src/tools/CMakeFiles/csg_resample_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 88%] Generating csg_resample.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && ./csg_resample --help > csg_resample.help cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_resample.help > csg_resample.t2t cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_reupdate.t2t -o csg_reupdate.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_resample.t2t -o csg_resample.man make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 88%] Built target csg_reupdate_manpage make -f src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build.make src/tools/CMakeFiles/csg_imc_solve_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build.make src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 88%] Built target csg_resample_manpage [ 89%] Generating csg_imc_solve.man make -f src/tools/CMakeFiles/csg_map_manpage.dir/build.make src/tools/CMakeFiles/csg_map_manpage.dir/depend cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && ./csg_imc_solve --help > csg_imc_solve.help make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_map_manpage.dir/DependInfo.cmake --color= [ 90%] Linking CXX executable radii/csg_radii cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csgapps && /usr/bin/cmake -E cmake_link_script CMakeFiles/radii.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_map_manpage.dir/build.make src/tools/CMakeFiles/csg_map_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_imc_solve.help > csg_imc_solve.t2t /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/radii.dir/radii/radii.cc.o -o radii/csg_radii -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 [ 90%] Generating csg_map.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && ./csg_map --help > csg_map.help cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_map.help > csg_map.t2t cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_imc_solve.t2t -o csg_imc_solve.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_map.t2t -o csg_map.man make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 90%] Built target csg_imc_solve_manpage make -f src/tools/CMakeFiles/csg_dump_manpage.dir/build.make src/tools/CMakeFiles/csg_dump_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dump_manpage.dir/DependInfo.cmake --color= [ 90%] Built target csg_map_manpage make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/depend make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_dump_manpage.dir/build.make src/tools/CMakeFiles/csg_dump_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csg_boltzmann /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 90%] Built target radii make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build [ 91%] Linking CXX executable csg_stat cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_stat.dir/link.txt --verbose=1 make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 91%] Generating csg_dump.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && ./csg_dump --help > csg_dump.help [ 91%] Building CXX object src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aBn8Zl/votca-csg-2021.2/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -MD -MT src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o -MF CMakeFiles/csg_boltzmann.dir/main.cc.o.d -o CMakeFiles/csg_boltzmann.dir/main.cc.o -c /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csg_boltzmann/main.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_stat.dir/csg_stat.cc.o CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -o csg_stat -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_dump.help > csg_dump.t2t cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_dump.t2t -o csg_dump.man make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 91%] Built target csg_dump_manpage make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 91%] Built target csg_stat make -f src/tools/CMakeFiles/csg_stat_manpage.dir/build.make src/tools/CMakeFiles/csg_stat_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_stat_manpage.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_stat_manpage.dir/build.make src/tools/CMakeFiles/csg_stat_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 92%] Generating csg_stat.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && ./csg_stat --help > csg_stat.help cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_stat.help > csg_stat.t2t cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_stat.t2t -o csg_stat.man make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 92%] Built target csg_stat_manpage [ 93%] Linking CXX executable csg_fmatch cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_fmatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now 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cmake_link_script CMakeFiles/partial_rdf.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/partial_rdf.dir/partial_rdf/partial_rdf.cc.o CMakeFiles/partial_rdf.dir/partial_rdf/rdf_calculator.cc.o -o partial_rdf/csg_partial_rdf -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 [ 98%] Linking CXX executable template_serial cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template_serial.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/template_serial.dir/template_serial.cc.o -o template_serial -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg ../../src/libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 98%] Built target partial_rdf make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 98%] Built target template_serial [ 99%] Linking CXX executable csg_boltzmann cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_boltzmann.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aBn8Zl/votca-csg-2021.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_boltzmann.dir/main.cc.o CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -o csg_boltzmann -Wl,-rpath,/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.2021 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.2021 /usr/lib/x86_64-linux-gnu/libfftw3.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [ 99%] Built target csg_boltzmann make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/src/csg_boltzmann /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [100%] Generating csg_boltzmann.man cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann && ./csg_boltzmann --help > csg_boltzmann.help cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann && /bin/bash /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann/../../scripts/help2t2t csg_boltzmann.help > csg_boltzmann.t2t cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/txt2tags -q -t man -i csg_boltzmann.t2t -o csg_boltzmann.man make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [100%] Built target csg_boltzmann_manpage make -f CMakeFiles/manpages.dir/build.make CMakeFiles/manpages.dir/depend make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cd /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2 /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/CMakeFiles/manpages.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make -f CMakeFiles/manpages.dir/build.make CMakeFiles/manpages.dir/build make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/manpages.dir/build'. make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' [100%] Built target manpages make[2]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -i" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -i debian/rules override_dh_auto_install make[1]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2' dh_auto_install cd obj-x86_64-linux-gnu && make -j10 install DESTDIR=/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/votca-csg-aBn8Zl/votca-csg-2021.2 -B/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/lib/x86_64-linux-gnu/libvotca_csg.so.2021 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/lib/x86_64-linux-gnu/libvotca_csg.so -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_CSG/VOTCA_CSG_Targets.cmake -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_CSG/VOTCA_CSG_Targets-none.cmake -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_CSG/VOTCA_CSGConfig.cmake -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_CSG/VOTCA_CSGConfigVersion.cmake -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_reupdate -- Set runtime path of "/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_reupdate" to "" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_reupdate.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_map -- Set runtime path of "/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_map" to "" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_map.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_dump -- Set runtime path of "/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_dump" to "" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_dump.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_property -- Set runtime path of "/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_property" to "" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_property.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_resample -- Set runtime path of "/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_resample" to "" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_resample.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_stat -- Set runtime path of "/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_stat" to "" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_stat.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_fmatch -- Set runtime path of "/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_fmatch" to "" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_fmatch.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_gmxtopol -- Set runtime path of "/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_gmxtopol" to "" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_gmxtopol.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_dlptopol -- Set runtime path of "/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_dlptopol" to "" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_dlptopol.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_density -- Set runtime path of "/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_density" to "" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_density.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_imc_solve -- Set runtime path of "/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_imc_solve" to "" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_imc_solve.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_boltzmann -- Set runtime path of "/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_boltzmann" to "" -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_boltzmann.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_call -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_call.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/bin/csg_inverse -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/man/man1/csg_inverse.1 -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/rc/csg-completion.bash -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/basebead.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/bead.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/beadlist.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/beadmotif.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/beadmotifalgorithms.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/beadmotifconnector.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/beadpair.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/beadstructure.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/beadstructurealgorithms.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/beadtriple.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/boundarycondition.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/cgengine.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/cgmoleculedef.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/cgobserver.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/csgapplication.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/exclusionlist.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/fileformatfactory.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/imcio.h -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/include/votca/csg/interaction.h -- Installing: 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/build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/prepare_generic.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/prepare_generic_single.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/prepare_imc.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/prepare_optimizer.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/prepare_optimizer_single.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/prepare_re.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/pressure_cor_simple.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/pressure_cor_wjk.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/resample_target.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/run_genericsim.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/run_gromacs.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/simplex_downhill_processor.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/skeleton.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/skeleton.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/start_framework.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_average.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_change_flag.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_combine.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_dummy.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_extrapolate.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_functional.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_get_value.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_integrate.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_linearop.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_scale.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_smooth.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_switch_border.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_to_tab.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/table_to_xvg.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/tables_jackknife.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/tag_file.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/update_ibi.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/update_ibi_pot.pl -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/update_ibi_single.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/update_imc.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/update_imc_single.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/update_optimizer.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/update_optimizer_single.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/scripts/inverse/update_re.sh -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/template/template_serial.cc -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/template/template_threaded.cc -- Installing: /build/votca-csg-aBn8Zl/votca-csg-2021.2/debian/tmp/usr/share/votca/template/CMakeLists.txt make[2]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2/obj-x86_64-linux-gnu' cp -r tutorials debian/tmp/usr/share/votca/ chmod 755 debian/tmp/usr/share/votca/tutorials/urea-water/kb-ibi/run.sh make[1]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2' dh_install -i dh_installdocs -i dh_installchangelogs -i debian/rules override_dh_python3 make[1]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2' dh_python3 /usr/share/votca/scripts/inverse/ -X.sh -X.pl I: dh_python3 tools:114: replacing shebang in debian/votca-csg-scripts/usr/share/votca/scripts/inverse/cma_processor.py make[1]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2' dh_perl -i dh_link -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i debian/rules override_dh_missing make[1]: Entering directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2' dh_missing --list-missing dh_missing: warning: usr/share/votca/rc/csg-completion.bash exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: libvotca-csg-dev (5), libvotca-csg2021 (1), votca-csg (15), votca-csg-scripts (2), votca-csg-tutorials (1) * dh_installdocs: libvotca-csg-dev (0), libvotca-csg2021 (0), votca-csg (0), votca-csg-scripts (0), votca-csg-tutorials (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. make[1]: Leaving directory '/build/votca-csg-aBn8Zl/votca-csg-2021.2' dh_installdeb -i dh_gencontrol -i dpkg-gencontrol: warning: package votca-csg-scripts: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'votca-csg-scripts' in '../votca-csg-scripts_2021.2-1_all.deb'. dpkg-deb: building package 'votca-csg-tutorials' in '../votca-csg-tutorials_2021.2-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../votca-csg_2021.2-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/votca-csg-aBn8Zl /tmp/votca-csg-2021.2-1iusbrsdb I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.Az264rSf8q... I: success in 612.5273 seconds md5: votca-csg-scripts_2021.2-1_all.deb: OK md5: votca-csg-tutorials_2021.2-1_all.deb: OK sha1: votca-csg-scripts_2021.2-1_all.deb: OK sha1: votca-csg-tutorials_2021.2-1_all.deb: OK sha256: votca-csg-scripts_2021.2-1_all.deb: OK sha256: votca-csg-tutorials_2021.2-1_all.deb: OK Checksums: OK