Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/v/votca-csg/votca-csg_1.6.4-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/votca-csg-1.6.4-1e28ucw4n/votca-csg_1.6.4-1_all.buildinfo Get source package info: votca-csg=1.6.4-1 Source URL: http://snapshot.notset.fr/mr/package/votca-csg/1.6.4-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 bash-completion=1:2.11-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-6 bsdutils=1:2.36.1-6 build-essential=12.9 bzip2=1.0.8-4 cmake=3.18.4-1+b1 cmake-data=3.18.4-1 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.1 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.10.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210126-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-3 gettext-base=0.21-3 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblas3=3.9.0-3 libblkid1=2.36.1-6 libboost-filesystem-dev=1.74.0.3 libboost-filesystem1.74-dev=1.74.0-8 libboost-filesystem1.74.0=1.74.0-8 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-8 libboost-program-options1.74.0=1.74.0-8 libboost-system-dev=1.74.0.3 libboost-system1.74-dev=1.74.0-8 libboost-system1.74.0=1.74.0-8 libboost1.74-dev=1.74.0-8 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.45.6-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libcurl4=7.74.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.256 libdebhelper-perl=13.3.1 libdpkg-perl=1.20.7.1 libeigen3-dev=3.3.9-2 libelf1=0.182-3 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libffi7=3.3-5 libfftw3-bin=3.3.8-2 libfftw3-dev=3.3.8-2 libfftw3-double3=3.3.8-2 libfftw3-long3=3.3.8-2 libfftw3-quad3=3.3.8-2 libfftw3-single3=3.3.8-2 libfile-stripnondeterminism-perl=1.10.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgfortran5=10.2.1-6 libglib2.0-0=2.66.4-3 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-5 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgromacs-dev=2020.5-1 libgromacs5=2020.5-1 libgsl-dev=2.6+dfsg-2 libgsl25=2.6+dfsg-2 libgslcblas0=2.6+dfsg-2 libgssapi-krb5-2=1.18.3-4 libhogweed6=3.6-2 libhwloc15=2.4.1~rc1+dfsg-1 libicu67=67.1-6 libidn2-0=2.3.0-5 libisl23=0.23-1 libitm1=10.2.1-6 libjsoncpp24=1.9.4-4 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 libldap-2.4-2=2.4.57+dfsg-1 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-6 libmpc3=1.2.0-1 libmpdec3=2.5.1-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libprocps8=2:3.3.16-5 libpsl5=0.21.0-1.1 libpython3-stdlib=3.9.1-1 libpython3.9-minimal=3.9.1-3 libpython3.9-stdlib=3.9.1-3 libquadmath0=10.2.1-6 libreadline8=8.1-1 librhash0=1.4.1-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsigsegv2=2.12-3 libsmartcols1=2.36.1-6 libsqlite3-0=3.34.1-1 libsqlite3-dev=3.34.1-1 libssh2-1=1.9.0-2 libssl1.1=1.1.1i-2 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.2-5 libtasn1-6=4.16.0-2 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.2-5 libunistring2=0.9.10-4 libuuid1=2.36.1-6 libuv1=1.40.0-1 libvotca-tools-dev=1.6.4-1 libvotca-tools6=1.6.4-1 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.9-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.68 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 procps=2:3.3.16-5 python3=3.9.1-1 python3-distutils=3.9.1-2 python3-lib2to3=3.9.1-2 python3-minimal=3.9.1-1 python3-pkg-resources=51.3.3-1 python3.9=3.9.1-3 python3.9-minimal=3.9.1-3 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 txt2tags=3.4-2 tzdata=2021a-1 util-linux=2.36.1-6 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210206T122928Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210129T031654Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d votca-csg=1.6.4-1 && mkdir -p /build/votca-csg-aACDmq && dpkg-source --no-check -x /*.dsc /build/votca-csg-aACDmq/votca-csg-1.6.4 && chown -R builduser:builduser /build/votca-csg-aACDmq" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/votca-csg-aACDmq/votca-csg-1.6.4 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1611898985" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/votca-csg-aACDmq /tmp/votca-csg-1.6.4-1e28ucw4n bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210129T031654Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.qmtwIu6cWv as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.qmtwIu6cWv Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210129T031654Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210129T031654Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (502 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4661 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210206T122928Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20210129T031654Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.qmtwIu6cWv Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210206T122928Z unstable InRelease [153 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20210129T031654Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20210206T122928Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210206T122928Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20210206T122928Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20210206T122928Z unstable/main amd64 Packages [11.7 MB] Fetched 34.4 MB in 29s (1176 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.qmtwIu6cWv I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d votca-csg=1.6.4-1 && mkdir -p /build/votca-csg-aACDmq && dpkg-source --no-check -x /*.dsc /build/votca-csg-aACDmq/votca-csg-1.6.4 && chown -R builduser:builduser /build/votca-csg-aACDmq"' exec /tmp/mmdebstrap.qmtwIu6cWv Reading package lists... NOTICE: 'votca-csg' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/votca-csg.git Please use: git clone https://salsa.debian.org/debichem-team/votca-csg.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6490 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main votca-csg 1.6.4-1 (dsc) [2829 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main votca-csg 1.6.4-1 (tar) [5944 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main votca-csg 1.6.4-1 (tar) [538 kB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main votca-csg 1.6.4-1 (diff) [5132 B] Fetched 6490 kB in 6s (1035 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'votca-csg_1.6.4-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting votca-csg in /build/votca-csg-aACDmq/votca-csg-1.6.4 dpkg-source: info: unpacking votca-csg_1.6.4.orig.tar.gz dpkg-source: info: unpacking votca-csg_1.6.4.orig-tutorials.tar.gz dpkg-source: info: unpacking votca-csg_1.6.4-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/votca-csg-aACDmq/votca-csg-1.6.4 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1611898985" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.qmtwIu6cWv dpkg-buildpackage: info: source package votca-csg dpkg-buildpackage: info: source version 1.6.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nicholas Breen dpkg-source --before-build . debian/rules clean dh clean --with bash-completion,python3 dh_clean debian/rules binary-indep dh binary-indep --with bash-completion,python3 dh_update_autotools_config -i dh_autoreconf -i debian/rules override_dh_auto_configure make[1]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4' dh_auto_configure -- -DLIB=lib/x86_64-linux-gnu cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DLIB=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found TXT2TAGS: /usr/bin/txt2tags -- Found UnixCommands: /bin/bash -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.53.0") found components: program_options filesystem system -- Found Eigen3: /usr/share/eigen3/cmake -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.53.0") found components: program_options -- Found VOTCA_TOOLS: /usr/lib/x86_64-linux-gnu/cmake/VOTCA_TOOLS -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for module 'libgromacs_d' -- Found libgromacs_d, version 2020.5-Debian-2020.5-1 -- Checking for module 'libgromacs' -- Found libgromacs, version 2020.5-Debian-2020.5-1 -- Looking for c++ gmx_version in /usr/lib/x86_64-linux-gnu/libgromacs_d.so -- Looking for c++ gmx_version in /usr/lib/x86_64-linux-gnu/libgromacs_d.so - found -- Looking for c++ gmx_is_single_precision in /usr/lib/x86_64-linux-gnu/libgromacs_d.so -- Looking for c++ gmx_is_single_precision in /usr/lib/x86_64-linux-gnu/libgromacs_d.so - not found -- Looking for c++ gmx_is_double_precision in /usr/lib/x86_64-linux-gnu/libgromacs_d.so -- Looking for c++ gmx_is_double_precision in /usr/lib/x86_64-linux-gnu/libgromacs_d.so - found -- Found GROMACS: /usr/lib/x86_64-linux-gnu/libgromacs_d.so (found suitable version "2020.5", minimum required is "2018") CMake Warning at CMakeLists.txt:81 (message): Gromacs-2020 and above have no support for tabulated interactions, that are needed for coarse-graining (see and comment on https://gitlab.com/gromacs/gromacs/-/issues/1347) -- Could NOT find GMX (missing: GMX_EXECUTABLE) -- Looking for assert.h -- Looking for assert.h - found -- Looking for C++ include algorithm -- Looking for C++ include algorithm - found -- Looking for C++ include fstream -- Looking for C++ include fstream - found -- Looking for C++ include iomanip -- Looking for C++ include iomanip - found -- Looking for C++ include iostream -- Looking for C++ include iostream - found -- Looking for C++ include list -- Looking for C++ include list - found -- Looking for C++ include map -- Looking for C++ include map - found -- Looking for C++ include numeric -- Looking for C++ include numeric - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for C++ include stdexcept -- Looking for C++ include stdexcept - found -- Looking for C++ include string -- Looking for C++ include string - found -- Looking for C++ include vector -- Looking for C++ include vector - found -- Looking for C++ include cstdlib -- Looking for C++ include cstdlib - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (found version "") -- Could NOT find LMP (missing: LMP_EXECUTABLE) -- The following OPTIONAL packages have been found: * TXT2TAGS * UnixCommands * PkgConfig -- The following REQUIRED packages have been found: * Threads * boost_filesystem (required version == 1.74.0) * boost_system (required version == 1.74.0) * Eigen3 * boost_headers (required version == 1.74.0) * boost_program_options (required version == 1.74.0) * Boost (required version >= 1.53.0) * VOTCA_TOOLS * GROMACS (required version >= 2018) -- The following OPTIONAL packages have not been found: * HDF5 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4' dh_auto_build -i cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/votca-csg-aACDmq/votca-csg-1.6.4 -B/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/CMakeFiles /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f share/man/CMakeFiles/votca-csg_manpage.dir/build.make share/man/CMakeFiles/votca-csg_manpage.dir/depend make -f scripts/CMakeFiles/help2t2t_build.dir/build.make scripts/CMakeFiles/help2t2t_build.dir/depend make -f src/libcsg/CMakeFiles/gitversion-csg.dir/build.make src/libcsg/CMakeFiles/gitversion-csg.dir/depend make -f scripts/CMakeFiles/csg_inverse_build.dir/build.make scripts/CMakeFiles/csg_inverse_build.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/share/man /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/man /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/man/CMakeFiles/votca-csg_manpage.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/scripts /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/help2t2t_build.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg/CMakeFiles/gitversion-csg.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/scripts /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_inverse_build.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_inverse_build.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_inverse_build.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_inverse_build.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/help2t2t_build.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/help2t2t_build.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/help2t2t_build.dir/depend.internal". Scanning dependencies of target csg_inverse_build Scanning dependencies of target help2t2t_build Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/man/CMakeFiles/votca-csg_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/man/CMakeFiles/votca-csg_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/man/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/man/CMakeFiles/votca-csg_manpage.dir/depend.internal". make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/help2t2t_build.dir/build.make scripts/CMakeFiles/help2t2t_build.dir/build Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg/CMakeFiles/gitversion-csg.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg/CMakeFiles/gitversion-csg.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg/CMakeFiles/gitversion-csg.dir/depend.internal". make -f scripts/CMakeFiles/csg_inverse_build.dir/build.make scripts/CMakeFiles/csg_inverse_build.dir/build Scanning dependencies of target votca-csg_manpage make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' Scanning dependencies of target gitversion-csg make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f share/man/CMakeFiles/votca-csg_manpage.dir/build.make share/man/CMakeFiles/votca-csg_manpage.dir/build make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/libcsg/CMakeFiles/gitversion-csg.dir/build.make src/libcsg/CMakeFiles/gitversion-csg.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/cmake -DTOP_SOURCE_DIR="/build/votca-csg-aACDmq/votca-csg-1.6.4" -DGIT_EXECUTABLE="" -P /build/votca-csg-aACDmq/votca-csg-1.6.4/CMakeModules/gitversion.cmake [ 1%] Generating help2t2t, ALL [ 2%] Generating csg_inverse cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT="help2t2t.out" -DOUTPUT="help2t2t" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-aACDmq/votca-csg-1.6.4" -P /build/votca-csg-aACDmq/votca-csg-1.6.4/CMakeModules/gitscript.cmake cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT="csg_inverse.out" -DOUTPUT="csg_inverse" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-aACDmq/votca-csg-1.6.4" -P /build/votca-csg-aACDmq/votca-csg-1.6.4/CMakeModules/gitscript.cmake [ 3%] Building votca-csg manpage cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/man && /usr/bin/txt2tags -q -t man -i /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/man/votca-csg.t2t -o /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/man/votca-csg.man make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 3%] Built target gitversion-csg make -f scripts/CMakeFiles/csg_call_build.dir/build.make scripts/CMakeFiles/csg_call_build.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/scripts /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_call_build.dir/DependInfo.cmake --color= [ 3%] Built target csg_inverse_build make -f src/libcsg/CMakeFiles/votca_csg.dir/build.make src/libcsg/CMakeFiles/votca_csg.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg/CMakeFiles/votca_csg.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_call_build.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_call_build.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_call_build.dir/depend.internal". Scanning dependencies of target csg_call_build make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/csg_call_build.dir/build.make scripts/CMakeFiles/csg_call_build.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 3%] Built target help2t2t_build make -f scripts/CMakeFiles/csg_inverse_manpage.dir/build.make scripts/CMakeFiles/csg_inverse_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/scripts /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_inverse_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg/CMakeFiles/votca_csg.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg/CMakeFiles/votca_csg.dir/depend.internal". [ 4%] Generating csg_call Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg/CMakeFiles/votca_csg.dir/depend.internal". cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT="csg_call.out" -DOUTPUT="csg_call" -DGIT_EXECUTABLE="" -DTOP_SOURCE_DIR="/build/votca-csg-aACDmq/votca-csg-1.6.4" -P /build/votca-csg-aACDmq/votca-csg-1.6.4/CMakeModules/gitscript.cmake Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_inverse_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_inverse_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_inverse_manpage.dir/depend.internal". Scanning dependencies of target csg_inverse_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/csg_inverse_manpage.dir/build.make scripts/CMakeFiles/csg_inverse_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 5%] Generating csg_inverse.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E env VOTCASHARE=/build/votca-csg-aACDmq/votca-csg-1.6.4/share /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/csg_inverse --help > csg_inverse.help make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/help2t2t csg_inverse.help > csg_inverse.t2t [ 5%] Built target csg_call_build make -f scripts/CMakeFiles/csg_call_manpage.dir/build.make scripts/CMakeFiles/csg_call_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/scripts /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_call_manpage.dir/DependInfo.cmake --color= Scanning dependencies of target votca_csg make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/libcsg/CMakeFiles/votca_csg.dir/build.make src/libcsg/CMakeFiles/votca_csg.dir/build Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_call_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_call_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/CMakeFiles/csg_call_manpage.dir/depend.internal". Scanning dependencies of target csg_call_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f scripts/CMakeFiles/csg_call_manpage.dir/build.make scripts/CMakeFiles/csg_call_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 6%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadlist.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadlist.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/beadlist.cc [ 7%] Generating csg_call.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E env VOTCASHARE=/build/votca-csg-aACDmq/votca-csg-1.6.4/share /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/csg_call --help > csg_call.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts && /usr/bin/txt2tags -q -t man -i csg_inverse.t2t -o csg_inverse.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts/help2t2t csg_call.help > csg_call.t2t make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 7%] Built target votca-csg_manpage cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/scripts && /usr/bin/txt2tags -q -t man -i csg_call.t2t -o csg_call.man [ 8%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotif.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadmotif.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/beadmotif.cc make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 9%] Built target csg_inverse_manpage [ 10%] Built target csg_call_manpage [ 11%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/beadmotifalgorithms.cc [ 12%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/beadmotifconnector.cc [ 13%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/beadstructurealgorithms.cc [ 14%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/boundarycondition.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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src/libcsg/CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/cgmoleculedef.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/cgmoleculedef.cc [ 17%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/csgapplication.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/csgapplication.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/csgapplication.cc [ 18%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/exclusionlist.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/exclusionlist.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/exclusionlist.cc [ 19%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/imcio.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/imcio.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/imcio.cc [ 20%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/map.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/map.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/map.cc [ 21%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/molecule.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/molecule.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/molecule.cc [ 22%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblist.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblist.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/nblist.cc [ 23%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblist_3body.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblist_3body.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/nblist_3body.cc [ 24%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblistgrid.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/nblistgrid.cc [ 25%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nblistgrid_3body.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/nblistgrid_3body.cc [ 26%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/nematicorder.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/nematicorder.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/nematicorder.cc [ 27%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/openbox.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/openbox.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/openbox.cc [ 28%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/orthorhombicbox.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/orthorhombicbox.cc [ 29%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunction.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/potentialfunctions/potentialfunction.cc [ 30%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctioncbspl.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/potentialfunctions/potentialfunctionljg.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/potentialfunctions/potentialfunctionljg.cc [ 33%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/topology.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/topology.cc.o -c 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src/libcsg/CMakeFiles/votca_csg.dir/version.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/version.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/version.cc /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/version.cc:36:54: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 36 | " (compiled " __DATE__ ", " __TIME__ ")"; | ^~~~~~~~ /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/version.cc:36:68: warning: macro 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src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/modules/io/dlpolytrajectoryreader.cc [ 42%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS -I/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/modules/io/dlpolytrajectorywriter.cc [ 43%] Building CXX object src/libcsg/CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -Dvotca_csg_EXPORTS 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DGMX_DOUBLE=1 -std=c++14 -o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/libcsg/modules/io/gmxtrajectorywriter.cc [ 56%] Linking CXX shared library libvotca_csg.so cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/cmake -E cmake_link_script CMakeFiles/votca_csg.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libvotca_csg.so.6 -o libvotca_csg.so.6 CMakeFiles/votca_csg.dir/beadlist.cc.o CMakeFiles/votca_csg.dir/beadmotif.cc.o CMakeFiles/votca_csg.dir/beadmotifalgorithms.cc.o CMakeFiles/votca_csg.dir/beadmotifconnector.cc.o CMakeFiles/votca_csg.dir/beadstructurealgorithms.cc.o CMakeFiles/votca_csg.dir/boundarycondition.cc.o 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CMakeFiles/votca_csg.dir/trajectoryreader.cc.o CMakeFiles/votca_csg.dir/trajectorywriter.cc.o CMakeFiles/votca_csg.dir/triclinicbox.cc.o CMakeFiles/votca_csg.dir/version.cc.o CMakeFiles/votca_csg.dir/modules/io/dlpolytopologyreader.cc.o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectoryreader.cc.o CMakeFiles/votca_csg.dir/modules/io/dlpolytrajectorywriter.cc.o CMakeFiles/votca_csg.dir/modules/io/groreader.cc.o CMakeFiles/votca_csg.dir/modules/io/growriter.cc.o CMakeFiles/votca_csg.dir/modules/io/lammpsdatareader.cc.o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpreader.cc.o CMakeFiles/votca_csg.dir/modules/io/lammpsdumpwriter.cc.o CMakeFiles/votca_csg.dir/modules/io/pdbreader.cc.o CMakeFiles/votca_csg.dir/modules/io/pdbwriter.cc.o CMakeFiles/votca_csg.dir/modules/io/xmltopologyreader.cc.o CMakeFiles/votca_csg.dir/modules/io/xyzreader.cc.o CMakeFiles/votca_csg.dir/modules/io/xyzwriter.cc.o CMakeFiles/votca_csg.dir/modules/io/gmxtopologyreader.cc.o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectoryreader.cc.o CMakeFiles/votca_csg.dir/modules/io/gmxtrajectorywriter.cc.o /usr/lib/x86_64-linux-gnu/libgromacs_d.so /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 -lpthread cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg && /usr/bin/cmake -E cmake_symlink_library libvotca_csg.so.6 libvotca_csg.so.6 libvotca_csg.so make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 56%] Built target votca_csg make -f src/tools/CMakeFiles/csg_density.dir/build.make src/tools/CMakeFiles/csg_density.dir/depend make -f src/tools/CMakeFiles/csg_gmxtopol.dir/build.make src/tools/CMakeFiles/csg_gmxtopol.dir/depend make -f src/tools/CMakeFiles/csg_dlptopol.dir/build.make src/tools/CMakeFiles/csg_dlptopol.dir/depend make -f src/tools/CMakeFiles/csg_fmatch.dir/build.make src/tools/CMakeFiles/csg_fmatch.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_density.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu 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Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dlptopol.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dlptopol.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dlptopol.dir/depend.internal". Scanning dependencies of target csg_density make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_density.dir/build.make src/tools/CMakeFiles/csg_density.dir/build Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_gmxtopol.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_gmxtopol.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_gmxtopol.dir/depend.internal". Scanning dependencies of target csg_fmatch make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_fmatch.dir/build.make src/tools/CMakeFiles/csg_fmatch.dir/build Scanning dependencies of target csg_dlptopol make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_dlptopol.dir/build.make src/tools/CMakeFiles/csg_dlptopol.dir/build Scanning dependencies of target csg_gmxtopol make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_gmxtopol.dir/build.make src/tools/CMakeFiles/csg_gmxtopol.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 57%] Building CXX object src/tools/CMakeFiles/csg_density.dir/csg_density.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_density.dir/csg_density.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools/csg_density.cc [ 58%] Building CXX object src/tools/CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools/csg_fmatch.cc [ 59%] Building CXX object src/tools/CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools/csg_dlptopol.cc [ 60%] Building CXX object src/tools/CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools/csg_gmxtopol.cc [ 61%] Linking CXX executable csg_density cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_density.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_density.dir/csg_density.cc.o -o csg_density -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 [ 62%] Linking CXX executable csg_gmxtopol cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_gmxtopol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_gmxtopol.dir/csg_gmxtopol.cc.o -o csg_gmxtopol -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 62%] Built target csg_gmxtopol make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_property.dir/build.make src/tools/CMakeFiles/csg_property.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_property.dir/DependInfo.cmake --color= [ 62%] Built target csg_density make -f src/tools/CMakeFiles/csg_reupdate.dir/build.make src/tools/CMakeFiles/csg_reupdate.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_reupdate.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_reupdate.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_reupdate.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_reupdate.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_property.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_property.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_property.dir/depend.internal". Scanning dependencies of target csg_property make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_property.dir/build.make src/tools/CMakeFiles/csg_property.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 63%] Building CXX object src/tools/CMakeFiles/csg_property.dir/csg_property.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_property.dir/csg_property.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools/csg_property.cc Scanning dependencies of target csg_reupdate make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_reupdate.dir/build.make src/tools/CMakeFiles/csg_reupdate.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 64%] Linking CXX executable csg_dlptopol cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_dlptopol.dir/link.txt --verbose=1 [ 65%] Building CXX object src/tools/CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_reupdate.dir/csg_reupdate.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools/csg_reupdate.cc /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_dlptopol.dir/csg_dlptopol.cc.o -o csg_dlptopol -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 65%] Built target csg_dlptopol make -f src/tools/CMakeFiles/csg_resample.dir/build.make src/tools/CMakeFiles/csg_resample.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_resample.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_resample.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_resample.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_resample.dir/depend.internal". Scanning dependencies of target csg_resample make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_resample.dir/build.make src/tools/CMakeFiles/csg_resample.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 66%] Building CXX object src/tools/CMakeFiles/csg_resample.dir/csg_resample.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_resample.dir/csg_resample.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools/csg_resample.cc [ 67%] Linking CXX executable csg_property cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_property.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_property.dir/csg_property.cc.o -o csg_property -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 67%] Built target csg_property make -f src/tools/CMakeFiles/csg_imc_solve.dir/build.make src/tools/CMakeFiles/csg_imc_solve.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_imc_solve.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_imc_solve.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_imc_solve.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_imc_solve.dir/depend.internal". Scanning dependencies of target csg_imc_solve make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_imc_solve.dir/build.make src/tools/CMakeFiles/csg_imc_solve.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 68%] Building CXX object src/tools/CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools/csg_imc_solve.cc [ 69%] Linking CXX executable csg_resample cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_resample.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_resample.dir/csg_resample.cc.o -o csg_resample -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 69%] Built target csg_resample make -f src/tools/CMakeFiles/csg_map.dir/build.make src/tools/CMakeFiles/csg_map.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_map.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_map.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_map.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_map.dir/depend.internal". Scanning dependencies of target csg_map make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_map.dir/build.make src/tools/CMakeFiles/csg_map.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 70%] Building CXX object src/tools/CMakeFiles/csg_map.dir/csg_map.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_map.dir/csg_map.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools/csg_map.cc [ 71%] Linking CXX executable csg_fmatch cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_fmatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_fmatch.dir/csg_fmatch.cc.o -o csg_fmatch -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 71%] Built target csg_fmatch make -f src/tools/CMakeFiles/csg_dump.dir/build.make src/tools/CMakeFiles/csg_dump.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dump.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dump.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dump.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dump.dir/depend.internal". Scanning dependencies of target csg_dump make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_dump.dir/build.make src/tools/CMakeFiles/csg_dump.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 72%] Building CXX object src/tools/CMakeFiles/csg_dump.dir/csg_dump.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_dump.dir/csg_dump.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools/csg_dump.cc [ 73%] Linking CXX executable csg_map cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_map.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_map.dir/csg_map.cc.o -o csg_map -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 73%] Built target csg_map make -f src/tools/CMakeFiles/csg_stat.dir/build.make src/tools/CMakeFiles/csg_stat.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_stat.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_stat.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_stat.dir/depend.internal". 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Scanning dependencies of target votca_csg_boltzmann make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 76%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/csg_boltzmann/bondedstatistics.cc [ 77%] Linking CXX executable csg_imc_solve cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_imc_solve.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_imc_solve.dir/csg_imc_solve.cc.o -o csg_imc_solve -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 77%] Built target csg_imc_solve make -f share/template/CMakeFiles/template_threaded.dir/build.make share/template/CMakeFiles/template_threaded.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/share/template /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/template /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/template/CMakeFiles/template_threaded.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/template/CMakeFiles/template_threaded.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/template/CMakeFiles/template_threaded.dir/depend.internal". 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Scanning dependencies of target template_threaded make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f share/template/CMakeFiles/template_threaded.dir/build.make share/template/CMakeFiles/template_threaded.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 78%] Building CXX object share/template/CMakeFiles/template_threaded.dir/template_threaded.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/template && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/template_threaded.dir/template_threaded.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/share/template/template_threaded.cc [ 79%] Linking CXX executable csg_dump cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_dump.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_dump.dir/csg_dump.cc.o -o csg_dump -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 79%] Built target csg_dump [ 80%] Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB 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Building CXX object src/csg_boltzmann/CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/csg_boltzmann/tabulatedpotential.cc [ 83%] Linking CXX executable template_threaded cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template_threaded.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/template_threaded.dir/template_threaded.cc.o -o template_threaded -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg ../../src/libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make -f share/template/CMakeFiles/template_serial.dir/build.make share/template/CMakeFiles/template_serial.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/share/template /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/template 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Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/template/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/template/CMakeFiles/template_serial.dir/depend.internal". Scanning dependencies of target template_serial make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f share/template/CMakeFiles/template_serial.dir/build.make share/template/CMakeFiles/template_serial.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 84%] Building CXX object share/template/CMakeFiles/template_serial.dir/template_serial.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/template && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/template_serial.dir/template_serial.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/share/template/template_serial.cc make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 84%] Built target template_threaded make -f src/tools/CMakeFiles/csg_density_manpage.dir/build.make src/tools/CMakeFiles/csg_density_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_density_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_density_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_density_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_density_manpage.dir/depend.internal". Scanning dependencies of target csg_density_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_density_manpage.dir/build.make src/tools/CMakeFiles/csg_density_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 85%] Generating csg_density.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && ./csg_density --help > csg_density.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_density.help > csg_density.t2t cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_density.t2t -o csg_density.man make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 85%] Built target csg_density_manpage make -f src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build.make src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/depend.internal". Scanning dependencies of target csg_gmxtopol_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build.make src/tools/CMakeFiles/csg_gmxtopol_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 86%] Generating csg_gmxtopol.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && ./csg_gmxtopol --help > csg_gmxtopol.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_gmxtopol.help > csg_gmxtopol.t2t cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_gmxtopol.t2t -o csg_gmxtopol.man make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 86%] Built target csg_gmxtopol_manpage make -f src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build.make src/tools/CMakeFiles/csg_dlptopol_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dlptopol_manpage.dir/depend.internal". Scanning dependencies of target csg_dlptopol_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build.make src/tools/CMakeFiles/csg_dlptopol_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 87%] Generating csg_dlptopol.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && ./csg_dlptopol --help > csg_dlptopol.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_dlptopol.help > csg_dlptopol.t2t cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_dlptopol.t2t -o csg_dlptopol.man make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 87%] Built target csg_dlptopol_manpage make -f src/tools/CMakeFiles/csg_fmatch_manpage.dir/build.make src/tools/CMakeFiles/csg_fmatch_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_fmatch_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_fmatch_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_fmatch_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_fmatch_manpage.dir/depend.internal". Scanning dependencies of target csg_fmatch_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_fmatch_manpage.dir/build.make src/tools/CMakeFiles/csg_fmatch_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 88%] Generating csg_fmatch.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && ./csg_fmatch --help > csg_fmatch.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_fmatch.help > csg_fmatch.t2t cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_fmatch.t2t -o csg_fmatch.man make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 88%] Built target csg_fmatch_manpage make -f src/tools/CMakeFiles/csg_property_manpage.dir/build.make src/tools/CMakeFiles/csg_property_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_property_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_property_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_property_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_property_manpage.dir/depend.internal". Scanning dependencies of target csg_property_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_property_manpage.dir/build.make src/tools/CMakeFiles/csg_property_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 89%] Generating csg_property.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && ./csg_property --help > csg_property.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_property.help > csg_property.t2t cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_property.t2t -o csg_property.man make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 89%] Built target csg_property_manpage make -f src/tools/CMakeFiles/csg_reupdate_manpage.dir/build.make src/tools/CMakeFiles/csg_reupdate_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_reupdate_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_reupdate_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_reupdate_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_reupdate_manpage.dir/depend.internal". Scanning dependencies of target csg_reupdate_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_reupdate_manpage.dir/build.make src/tools/CMakeFiles/csg_reupdate_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 90%] Generating csg_reupdate.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && ./csg_reupdate --help > csg_reupdate.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_reupdate.help > csg_reupdate.t2t cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_reupdate.t2t -o csg_reupdate.man make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 90%] Built target csg_reupdate_manpage make -f src/tools/CMakeFiles/csg_resample_manpage.dir/build.make src/tools/CMakeFiles/csg_resample_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_resample_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_resample_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_resample_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_resample_manpage.dir/depend.internal". Scanning dependencies of target csg_resample_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_resample_manpage.dir/build.make src/tools/CMakeFiles/csg_resample_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 91%] Generating csg_resample.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && ./csg_resample --help > csg_resample.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_resample.help > csg_resample.t2t cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_resample.t2t -o csg_resample.man make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 91%] Built target csg_resample_manpage make -f src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build.make src/tools/CMakeFiles/csg_imc_solve_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_imc_solve_manpage.dir/depend.internal". Scanning dependencies of target csg_imc_solve_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build.make src/tools/CMakeFiles/csg_imc_solve_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 92%] Generating csg_imc_solve.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && ./csg_imc_solve --help > csg_imc_solve.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_imc_solve.help > csg_imc_solve.t2t cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_imc_solve.t2t -o csg_imc_solve.man make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 92%] Built target csg_imc_solve_manpage make -f src/tools/CMakeFiles/csg_map_manpage.dir/build.make src/tools/CMakeFiles/csg_map_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_map_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_map_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_map_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_map_manpage.dir/depend.internal". Scanning dependencies of target csg_map_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_map_manpage.dir/build.make src/tools/CMakeFiles/csg_map_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 93%] Generating csg_map.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && ./csg_map --help > csg_map.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_map.help > csg_map.t2t cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_map.t2t -o csg_map.man [ 94%] Linking CXX static library libvotca_csg_boltzmann.a cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/cmake -P CMakeFiles/votca_csg_boltzmann.dir/cmake_clean_target.cmake cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/cmake -E cmake_link_script CMakeFiles/votca_csg_boltzmann.dir/link.txt --verbose=1 /usr/bin/ar qc libvotca_csg_boltzmann.a CMakeFiles/votca_csg_boltzmann.dir/bondedstatistics.cc.o CMakeFiles/votca_csg_boltzmann.dir/stdanalysis.cc.o CMakeFiles/votca_csg_boltzmann.dir/tabulatedpotential.cc.o make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 94%] Built target csg_map_manpage make -f src/tools/CMakeFiles/csg_dump_manpage.dir/build.make src/tools/CMakeFiles/csg_dump_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dump_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dump_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dump_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_dump_manpage.dir/depend.internal". Scanning dependencies of target csg_dump_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_dump_manpage.dir/build.make src/tools/CMakeFiles/csg_dump_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' /usr/bin/ranlib libvotca_csg_boltzmann.a [ 95%] Generating csg_dump.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && ./csg_dump --help > csg_dump.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_dump.help > csg_dump.t2t cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_dump.t2t -o csg_dump.man make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 95%] Built target votca_csg_boltzmann make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/csg_boltzmann /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/depend.internal". Scanning dependencies of target csg_boltzmann make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 95%] Building CXX object src/csg_boltzmann/CMakeFiles/csg_boltzmann.dir/main.cc.o cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -I/build/votca-csg-aACDmq/votca-csg-1.6.4/include -isystem /usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/csg_boltzmann.dir/main.cc.o -c /build/votca-csg-aACDmq/votca-csg-1.6.4/src/csg_boltzmann/main.cc make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 95%] Built target csg_dump_manpage [ 96%] Linking CXX executable csg_stat cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_stat.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_stat.dir/csg_stat.cc.o CMakeFiles/csg_stat.dir/csg_stat_imc.cc.o -o csg_stat -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg: ../libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 96%] Built target csg_stat make -f src/tools/CMakeFiles/csg_stat_manpage.dir/build.make src/tools/CMakeFiles/csg_stat_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_stat_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_stat_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_stat_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/CMakeFiles/csg_stat_manpage.dir/depend.internal". Scanning dependencies of target csg_stat_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/tools/CMakeFiles/csg_stat_manpage.dir/build.make src/tools/CMakeFiles/csg_stat_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 97%] Generating csg_stat.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && ./csg_stat --help > csg_stat.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools/../../scripts/help2t2t csg_stat.help > csg_stat.t2t cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/tools && /usr/bin/txt2tags -q -t man -i csg_stat.t2t -o csg_stat.man make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 97%] Built target csg_stat_manpage [ 98%] Linking CXX executable template_serial cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template_serial.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/template_serial.dir/template_serial.cc.o -o template_serial -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg ../../src/libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 98%] Built target template_serial [ 99%] Linking CXX executable csg_boltzmann cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/cmake -E cmake_link_script CMakeFiles/csg_boltzmann.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/votca-csg-aACDmq/votca-csg-1.6.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/csg_boltzmann.dir/main.cc.o -o csg_boltzmann -Wl,-rpath,/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/libcsg: libvotca_csg_boltzmann.a ../libcsg/libvotca_csg.so.6 /usr/lib/x86_64-linux-gnu/libvotca_tools.so.6 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.74.0 make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [ 99%] Built target csg_boltzmann make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/src/csg_boltzmann /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/depend.internal". Scanning dependencies of target csg_boltzmann_manpage make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build.make src/csg_boltzmann/CMakeFiles/csg_boltzmann_manpage.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [100%] Generating csg_boltzmann.man cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann && ./csg_boltzmann --help > csg_boltzmann.help cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann && /bin/bash /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann/../../scripts/help2t2t csg_boltzmann.help > csg_boltzmann.t2t cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/src/csg_boltzmann && /usr/bin/txt2tags -q -t man -i csg_boltzmann.t2t -o csg_boltzmann.man make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [100%] Built target csg_boltzmann_manpage make -f CMakeFiles/manpages.dir/build.make CMakeFiles/manpages.dir/depend make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cd /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4 /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/CMakeFiles/manpages.dir/DependInfo.cmake --color= Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/CMakeFiles/manpages.dir/DependInfo.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/CMakeFiles/manpages.dir/depend.internal". Dependee "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/CMakeFiles/manpages.dir/depend.internal". Scanning dependencies of target manpages make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make -f CMakeFiles/manpages.dir/build.make CMakeFiles/manpages.dir/build make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/manpages.dir/build'. make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' [100%] Built target manpages make[2]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' dh_auto_test -i create-stamp debian/debhelper-build-stamp dh_prep -i debian/rules override_dh_auto_install make[1]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4' dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/votca-csg-aACDmq/votca-csg-1.6.4 -B/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/lib/x86_64-linux-gnu/libvotca_csg.so.6 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/lib/x86_64-linux-gnu/libvotca_csg.so -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_CSG/VOTCA_CSG_Targets.cmake -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_CSG/VOTCA_CSG_Targets-none.cmake -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_CSG/VOTCA_CSGConfig.cmake -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/VOTCA_CSG/VOTCA_CSGConfigVersion.cmake -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_reupdate -- Set runtime path of "/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_reupdate" to "" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_reupdate.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_map -- Set runtime path of "/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_map" to "" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_map.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_dump -- Set runtime path of "/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_dump" to "" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_dump.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_property -- Set runtime path of "/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_property" to "" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_property.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_resample -- Set runtime path of "/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_resample" to "" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_resample.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_stat -- Set runtime path of "/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_stat" to "" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_stat.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_fmatch -- Set runtime path of "/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_fmatch" to "" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_fmatch.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_gmxtopol -- Set runtime path of "/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_gmxtopol" to "" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_gmxtopol.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_dlptopol -- Set runtime path of "/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_dlptopol" to "" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_dlptopol.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_density -- Set runtime path of "/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_density" to "" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_density.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_imc_solve -- Set runtime path of "/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_imc_solve" to "" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_imc_solve.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_boltzmann -- Set runtime path of "/build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_boltzmann" to "" -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_boltzmann.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_call -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_call.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/bin/csg_inverse -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man1/csg_inverse.1 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/rc/csg-completion.bash -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/basebead.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/bead.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadlist.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadmotif.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadmotifalgorithms.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadmotifconnector.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadpair.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadstructure.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadstructurealgorithms.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadtriple.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/beadtype.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/boundarycondition.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/cgengine.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/cgmoleculedef.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/cgobserver.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/csgapplication.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/exclusionlist.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/fileformatfactory.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/imcio.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/interaction.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/map.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/molecule.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/moleculeitem.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/nblist.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/nblist_3body.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/nblistgrid.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/nblistgrid_3body.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/nematicorder.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/openbox.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/orthorhombicbox.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/pairlist.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/pdbwriter.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/potentialfunction.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/potentialfunctioncbspl.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/potentialfunctionlj126.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/potentialfunctionljg.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/residue.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/topology.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/topologyitem.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/topologymap.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/topologyreader.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/trajectoryreader.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/trajectorywriter.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/triclinicbox.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/triplelist.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/version.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/xyzreader.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/include/votca/csg/xyzwriter.h -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/man/man7/votca-csg.7 -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/xml/mapping.xml -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/xml/topol.xml -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/xml/csg_defaults.xml -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/CsgFunctions.pm -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/CsgSimplex.pm -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/csg_table -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/add_POT.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/add_pot_generic.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/calc_density_generic.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/calc_kbint.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/calc_pressure_gromacs.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/calc_pressure_lammps.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/calc_rdf_generic.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/calc_target_rdf_generic.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/clean_generic.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/cma_processor.py -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/convergence_check_default.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/dist_adjust.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/dist_boltzmann_invert.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/dummy.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/functions_common.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/functions_dlpoly.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/functions_genericsim.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/functions_gromacs.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/imc_stat_generic.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/initialize_step_generic.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/initialize_step_genericsim.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/initialize_step_optimizer.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/initialize_step_re.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/inverse.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/kbibi_ramp_correction.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/lj_126.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/merge_tables.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_parameters_to_potential.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_prepare_state.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_state_to_mapping.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_state_to_potentials.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_target_density.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_target_pressure.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/optimizer_target_rdf.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/post_add.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/post_add_single.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/post_update_generic.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/post_update_generic_single.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/post_update_re_single.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_acc_convergence.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_average.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_compress.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_convergence.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_copyback.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_dummy.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_overwrite.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_plot.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postadd_shift.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_addlj.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_cibi_correction.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_extrapolate.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_kbibi_correction.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_pressure.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_scale.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_smooth.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/postupd_splinesmooth.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potential_extrapolate.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potential_shift.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potential_to_dlpoly.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potential_to_generic.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potential_to_gromacs.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potential_to_lammps.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potentials_to_dlpoly.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/potentials_to_generic.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/pre_update_re.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/prepare_generic.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/prepare_generic_single.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/prepare_imc.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/prepare_optimizer.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/prepare_optimizer_single.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/prepare_re.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/pressure_cor_simple.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/pressure_cor_wjk.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/resample_target.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/run_genericsim.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/run_gromacs.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/simplex_downhill_processor.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/skeleton.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/skeleton.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/start_framework.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_average.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_change_flag.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_combine.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_dummy.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_extrapolate.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_functional.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_get_value.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_integrate.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_linearop.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_scale.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_smooth.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_switch_border.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_to_tab.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/table_to_xvg.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/tables_jackknife.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/tag_file.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_ibi.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_ibi_pot.pl -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_ibi_single.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_imc.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_imc_single.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_optimizer.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_optimizer_single.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/scripts/inverse/update_re.sh -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/template/template_serial.cc -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/template/template_threaded.cc -- Installing: /build/votca-csg-aACDmq/votca-csg-1.6.4/debian/tmp/usr/share/votca/template/CMakeLists.txt make[2]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4/obj-x86_64-linux-gnu' cp -r tutorials debian/tmp/usr/share/votca/ rm -f debian/tmp/usr/share/votca/tutorials/.gitignore chmod 755 debian/tmp/usr/share/votca/tutorials/urea-water/kb-ibi/run.sh make[1]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4' dh_install -i dh_installdocs -i dh_installchangelogs -i debian/rules override_dh_python3 make[1]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4' dh_python3 /usr/share/votca/scripts/inverse/ -X.sh -X.pl I: dh_python3 tools:114: replacing shebang in debian/votca-csg-scripts/usr/share/votca/scripts/inverse/cma_processor.py make[1]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4' dh_perl -i dh_link -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i debian/rules override_dh_missing make[1]: Entering directory '/build/votca-csg-aACDmq/votca-csg-1.6.4' dh_missing --list-missing dh_missing: warning: usr/share/votca/rc/csg-completion.bash exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: libvotca-csg-dev (5), libvotca-csg6 (1), votca-csg (15), votca-csg-scripts (2), votca-csg-tutorials (1) * dh_installdocs: libvotca-csg-dev (0), libvotca-csg6 (0), votca-csg (0), votca-csg-scripts (0), votca-csg-tutorials (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. make[1]: Leaving directory '/build/votca-csg-aACDmq/votca-csg-1.6.4' dh_installdeb -i dh_gencontrol -i dpkg-gencontrol: warning: package votca-csg-scripts: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'votca-csg-scripts' in '../votca-csg-scripts_1.6.4-1_all.deb'. dpkg-deb: building package 'votca-csg-tutorials' in '../votca-csg-tutorials_1.6.4-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../votca-csg_1.6.4-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/votca-csg-aACDmq /tmp/votca-csg-1.6.4-1e28ucw4n I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.qmtwIu6cWv... I: success in 2244.2966 seconds md5: votca-csg-scripts_1.6.4-1_all.deb: OK md5: votca-csg-tutorials_1.6.4-1_all.deb: OK sha1: votca-csg-scripts_1.6.4-1_all.deb: OK sha1: votca-csg-tutorials_1.6.4-1_all.deb: OK sha256: votca-csg-scripts_1.6.4-1_all.deb: OK sha256: votca-csg-tutorials_1.6.4-1_all.deb: OK Checksums: OK