Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/t/tracetuner/tracetuner_3.0.6~beta+dfsg-3_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/tracetuner-3.0.6~beta+dfsg-3w2pm2vx0/tracetuner_3.0.6~beta+dfsg-3_amd64.buildinfo Get source package info: tracetuner=3.0.6~beta+dfsg-3 Source URL: http://snapshot.notset.fr/mr/package/tracetuner/3.0.6~beta+dfsg-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 binutils=2.35.1-3 binutils-common=2.35.1-3 binutils-x86-64-linux-gnu=2.35.1-3 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-19 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.39-3 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.0-19 gcc=4:10.2.0-1 gcc-10=10.2.0-19 gcc-10-base=10.2.0-19 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libasan6=10.2.0-19 libatomic1=10.2.0-19 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-3 libblkid1=2.36.1-2 libbz2-1.0=1.0.8-4 libc-bin=2.31-5 libc-dev-bin=2.31-5 libc6=2.31-5 libc6-dev=2.31-5 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.0-19 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-3 libctf0=2.35.1-3 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdpkg-perl=1.20.5 libelf1=0.182-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.0-19 libgcc-s1=10.2.0-19 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libglib2.0-0=2.66.3-2 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.0-19 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-4 libisl23=0.23-1 libitm1=10.2.0-19 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblsan0=10.2.0-19 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libquadmath0=10.2.0-19 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsigsegv2=2.12-2 libsmartcols1=2.36.1-2 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-19 libstdc++6=10.2.0-19 libsub-override-perl=0.09-2 libsystemd0=246.6-5 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-19 libubsan1=10.2.0-19 libuchardet0=0.0.7-1 libudev1=246.6-5 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libxml2=2.9.10+dfsg-6.3 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 po-debconf=1.0.21 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 util-linux=2.36.1-2 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201202T205335Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d tracetuner=3.0.6~beta+dfsg-3 && mkdir -p /build/tracetuner-iPPB1J && dpkg-source --no-check -x /*.dsc /build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg && chown -R builduser:builduser /build/tracetuner-iPPB1J" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607121835" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/tracetuner-iPPB1J /tmp/tracetuner-3.0.6~beta+dfsg-3w2pm2vx0 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.sRKmaHwXis as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.sRKmaHwXis Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (972 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4614 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201202T205335Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.sRKmaHwXis Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201202T205335Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 22s (1036 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.sRKmaHwXis I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d tracetuner=3.0.6~beta+dfsg-3 && mkdir -p /build/tracetuner-iPPB1J && dpkg-source --no-check -x /*.dsc /build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg && chown -R builduser:builduser /build/tracetuner-iPPB1J"' exec /tmp/mmdebstrap.sRKmaHwXis Reading package lists... NOTICE: 'tracetuner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/tracetuner.git Please use: git clone https://salsa.debian.org/med-team/tracetuner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 395 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main tracetuner 3.0.6~beta+dfsg-3 (dsc) [2054 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main tracetuner 3.0.6~beta+dfsg-3 (tar) [385 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main tracetuner 3.0.6~beta+dfsg-3 (diff) [7920 B] Fetched 395 kB in 0s (1088 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'tracetuner_3.0.6~beta+dfsg-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting tracetuner in /build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg dpkg-source: info: unpacking tracetuner_3.0.6~beta+dfsg.orig.tar.xz dpkg-source: info: unpacking tracetuner_3.0.6~beta+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix_format_security.patch dpkg-source: info: applying cross.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607121835" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.sRKmaHwXis dpkg-buildpackage: info: source package tracetuner dpkg-buildpackage: info: source version 3.0.6~beta+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=src --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg' dh_auto_clean install -d /build/tracetuner-iPPB1J/tracetuner-3.0.6-beta\+dfsg/debian/.debhelper/generated/_source/home cd src && make -j1 clean make[2]: Entering directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src' cd compute_qv; make clean make[3]: Entering directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/compute_qv' make[3]: Leaving directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/compute_qv' cd mktrain; make clean make[3]: Entering directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/mktrain' make[3]: Leaving directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/mktrain' cd mklut; make clean make[3]: Entering directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/mklut' make[3]: Leaving directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/mklut' cd mkchk; make clean make[3]: Entering directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/mkchk' make[3]: Leaving directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/mkchk' make[2]: Leaving directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src' rm -rf lib obj rel make[1]: Leaving directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg' dh_autoreconf_clean -O--sourcedirectory=src -O--no-parallel dh_clean -O--sourcedirectory=src -O--no-parallel rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/tracetuner.substvars debian/files rm -fr -- debian/tracetuner/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --sourcedirectory=src --no-parallel dh_update_autotools_config -a -O--sourcedirectory=src -O--no-parallel dh_autoreconf -a -O--sourcedirectory=src -O--no-parallel dh_auto_configure -a -O--sourcedirectory=src -O--no-parallel install -d /build/tracetuner-iPPB1J/tracetuner-3.0.6-beta\+dfsg/debian/.debhelper/generated/_source/home dh_auto_build -a -O--sourcedirectory=src -O--no-parallel cd src && make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src' for dir in compute_qv mktrain mklut mkchk ; \ do (cd $dir; make EXTRACFLAGS="-g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic" LDFLAGS="-Wl,-z,relro -Wl,-z,now -Wl,--as-needed" all); \ done make[2]: Entering directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/compute_qv' mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c main.c -o ../../obj/Linux_64/main.o In file included from /usr/include/string.h:495, from main.c:27: In function ‘strncpy’, inlined from ‘main’ at main.c:1397:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1400:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 256 bytes from a string of length 999 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1421:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1376:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1386:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1485:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1391:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1692:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1676:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1663:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1644:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1636:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1587:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1580:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1572:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1546:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1450:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1376:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at main.c:1346:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mktrain/Btk_match_data.c -o ../../obj/Linux_64/Btk_match_data.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mktrain/Btk_compute_match.c -o ../../obj/Linux_64/Btk_compute_match.o ../mktrain/Btk_compute_match.c: In function ‘find_best_region’: ../mktrain/Btk_compute_match.c:658:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 658 | else | ^~~~ ../mktrain/Btk_compute_match.c:660:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 660 | max=i; | ^~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mktrain/Btk_sw.c -o ../../obj/Linux_64/Btk_sw.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_process_indels.c -o ../../obj/Linux_64/Btk_process_indels.o Btk_process_indels.c: In function ‘get_autocorrelation_indel_size’: Btk_process_indels.c:644:42: warning: variable ‘max_height’ set but not used [-Wunused-but-set-variable] 644 | float *ans[NUM_COLORS], height = 0., max_height = 0.; | ^~~~~~~~~~ Btk_process_indels.c:642:25: warning: variable ‘best_color’ set but not used [-Wunused-but-set-variable] 642 | int i, j, color, best_color, n=1; | ^~~~~~~~~~ In file included from /usr/include/string.h:495, from Btk_process_indels.c:33: In function ‘strncpy’, inlined from ‘Btk_process_indels’ at Btk_process_indels.c:2471:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Btk_process_indels.c: In function ‘Btk_process_indels’: Btk_process_indels.c:2470:22: note: length computed here 2470 | prefix_len = strlen(options.file_name) - strlen(suffix); | ^~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_atod.c -o ../../obj/Linux_64/Btk_atod.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_compute_qv.c -o ../../obj/Linux_64/Btk_compute_qv.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_call_bases.c -o ../../obj/Linux_64/Btk_call_bases.o Btk_call_bases.c: In function ‘get_best_peak_color_and_index_by_base_and_location’: Btk_call_bases.c:2988:28: warning: variable ‘new_location’ set but not used [-Wunused-but-set-variable] 2988 | int new_peak_index, new_location = location; | ^~~~~~~~~~~~ Btk_call_bases.c: In function ‘call_peak_by_location_color_and_index’: Btk_call_bases.c:3199:41: warning: variable ‘r’ set but not used [-Wunused-but-set-variable] 3199 | int i = base_ind, jc = color, j, l, r, k; | ^ Btk_call_bases.c: In function ‘mark_called_peaks’: Btk_call_bases.c:3547:28: warning: variable ‘cd_length’ set but not used [-Wunused-but-set-variable] 3547 | int Case, cd_index, cd_length; | ^~~~~~~~~ Btk_call_bases.c:3547:18: warning: variable ‘cd_index’ set but not used [-Wunused-but-set-variable] 3547 | int Case, cd_index, cd_length; | ^~~~~~~~ Btk_call_bases.c: In function ‘Btk_call_bases’: Btk_call_bases.c:3697:32: warning: variable ‘cweight’ set but not used [-Wunused-but-set-variable] 3697 | double height2, nweight, cweight; | ^~~~~~~ Btk_call_bases.c:3697:23: warning: variable ‘nweight’ set but not used [-Wunused-but-set-variable] 3697 | double height2, nweight, cweight; | ^~~~~~~ Btk_call_bases.c:3691:14: warning: variable ‘debug’ set but not used [-Wunused-but-set-variable] 3691 | char *debug, base, *context=NULL; | ^~~~~ At top level: Btk_call_bases.c:117:21: warning: ‘gSpacEst0’ defined but not used [-Wunused-const-variable=] 117 | static const double gSpacEst0 = 12.0; | ^~~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_process_raw_data.c -o ../../obj/Linux_64/Btk_process_raw_data.o Btk_process_raw_data.c: In function ‘estimate_spacing_variation_of_shifted_peaks’: Btk_process_raw_data.c:1142:26: warning: variable ‘cd1’ set but not used [-Wunused-but-set-variable] 1142 | ColorData *cd0, *cd1; | ^~~ Btk_process_raw_data.c:1142:20: warning: variable ‘cd0’ set but not used [-Wunused-but-set-variable] 1142 | ColorData *cd0, *cd1; | ^~~ Btk_process_raw_data.c: In function ‘make_DP_mobility_shifts’: Btk_process_raw_data.c:2299:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2299 | if (DEBUG_CURTIS && options->Verbose > 2 ) | ^~ Btk_process_raw_data.c:2300:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2300 | putc('o', stderr); fflush(stderr); | ^~~~~~ Btk_process_raw_data.c:2650:10: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 2650 | for ( color=0; color < NUM_COLORS; color++ ) | ^~~ Btk_process_raw_data.c:2652:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 2652 | fprintf(fp, " %8.3g\n", shift_err[i]); | ^~~~~~~ Btk_process_raw_data.c: In function ‘normalize_signals’: Btk_process_raw_data.c:2956:40: warning: ordered comparison of pointer with integer zero [-Wpedantic] 2956 | norm_factor[i] = (num_peaks>0) ? ave_int[i][m] : -1; | ^ Btk_process_raw_data.c: In function ‘make_multicomponent_iteration’: Btk_process_raw_data.c:3305:21: warning: variable ‘best_pos’ set but not used [-Wunused-but-set-variable] 3305 | int best_pos; | ^~~~~~~~ Btk_process_raw_data.c:3247:15: warning: variable ‘det4’ set but not used [-Wunused-but-set-variable] 3247 | float det4; | ^~~~ Btk_process_raw_data.c: In function ‘make_DP_mobility_shifts.isra’: Btk_process_raw_data.c:2567:17: warning: array subscript -1 is outside array bounds of ‘float[6]’ [-Warray-bounds] 2567 | fpoly(peaks[i]->ipos+shift_flag[color], powers-1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2568 | POLYFIT_DEGREE+1); | ~~~~~~~~~~~~~~~~~ Btk_process_raw_data.c:1992:19: note: while referencing ‘powers’ 1992 | float powers[POLYFIT_DEGREE+1]; | ^~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c util.c -o ../../obj/Linux_64/util.o util.c: In function ‘mobShiftQuality’: util.c:980:17: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 980 | int count[MAX_CHUNKS]; | ^~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c nr.c -o ../../obj/Linux_64/nr.o nr.c: In function ‘gaussj’: nr.c:487:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 487 | if (ipiv[j] != 1) | ^~ nr.c:497:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 497 | ++(ipiv[icol]); | ^~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_process_peaks.c -o ../../obj/Linux_64/Btk_process_peaks.o Btk_process_peaks.c: In function ‘colordata_detect_peaks’: Btk_process_peaks.c:524:45: warning: variable ‘relative_width’ set but not used [-Wunused-but-set-variable] 524 | sum_peak_width, average10_width, relative_width; | ^~~~~~~~~~~~~~ Btk_process_peaks.c: In function ‘add_one_peak’: Btk_process_peaks.c:2307:35: warning: variable ‘p2’ set but not used [-Wunused-but-set-variable] 2307 | Peak peak0, peak1, *p0, *p1, *p2; | ^~ Btk_process_peaks.c:2307:17: warning: variable ‘peak1’ set but not used [-Wunused-but-set-variable] 2307 | Peak peak0, peak1, *p0, *p1, *p2; | ^~~~~ Btk_process_peaks.c:2307:10: warning: variable ‘peak0’ set but not used [-Wunused-but-set-variable] 2307 | Peak peak0, peak1, *p0, *p1, *p2; | ^~~~~ Btk_process_peaks.c: In function ‘fit_single_peak’: Btk_process_peaks.c:2651:45: warning: variable ‘x2’ set but not used [-Wunused-but-set-variable] 2651 | double sum_exp = 0., sum_exp2 = 0., x2, B; | ^~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_qv_io.c -o ../../obj/Linux_64/Btk_qv_io.o Btk_qv_io.c: In function ‘Btk_read_sample_file’: Btk_qv_io.c:770:46: warning: ordered comparison of pointer with integer zero [-Wpedantic] 770 | if ((options.inp_phd == 0) && (num_bases > 0)) { | ^ Btk_qv_io.c:649:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 649 | fread(magic, 1, 2, fp); | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from Btk_qv_io.c:29: In function ‘strncpy’, inlined from ‘output_scf_file’ at Btk_qv_io.c:2636:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_compute_tp.c -o ../../obj/Linux_64/Btk_compute_tp.o Btk_compute_tp.c: In function ‘get_peak_height_ratio’: Btk_compute_tp.c:340:58: warning: variable ‘bad_ipos’ set but not used [-Wunused-but-set-variable] 340 | double max_uncalled_ipos = -1, min_called_ipos = -1, bad_ipos; | ^~~~~~~~ Btk_compute_tp.c: In function ‘get_peak_spacing_ratio’: Btk_compute_tp.c:394:17: warning: variable ‘bad_ipos’ set but not used [-Wunused-but-set-variable] 394 | double psr, bad_ipos, ipos; | ^~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_compute_tpars.c -o ../../obj/Linux_64/Btk_compute_tpars.o Btk_compute_tpars.c: In function ‘data_create’: Btk_compute_tpars.c:215:33: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess] 215 | (void)memset(data, 0, sizeof(data)); | ^ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_get_mixed_bases.c -o ../../obj/Linux_64/Btk_get_mixed_bases.o Btk_get_mixed_bases.c: In function ‘mixed_base’: Btk_get_mixed_bases.c:142:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 142 | else if (((b1 == 'G') && (b2 == 'T')) || ((b1 == 'T') && (b2 == 'G'))) | ^~ Btk_get_mixed_bases.c:145:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 145 | return 'N'; | ^~~~~~ Btk_get_mixed_bases.c: In function ‘find_alternative_peaks’: Btk_get_mixed_bases.c:473:34: warning: ordered comparison of pointer with integer zero [-Wpedantic] 473 | if ((num_peaks_found > 0) && | ^ Btk_get_mixed_bases.c: In function ‘call_mixed_bases’: Btk_get_mixed_bases.c:744:55: warning: variable ‘cweight’ set but not used [-Wunused-but-set-variable] 744 | double ratio, ave_wiheight, wiheight, nweight=1., cweight=1.; | ^~~~~~~ Btk_get_mixed_bases.c:744:43: warning: variable ‘nweight’ set but not used [-Wunused-but-set-variable] 744 | double ratio, ave_wiheight, wiheight, nweight=1., cweight=1.; | ^~~~~~~ Btk_get_mixed_bases.c:740:24: warning: variable ‘pos’ set but not used [-Wunused-but-set-variable] 740 | int i, j, k, n, pos, jbest, kbest, curr_num2, prev_right_bound=0; | ^~~ Btk_get_mixed_bases.c:739:25: warning: variable ‘context’ set but not used [-Wunused-but-set-variable] 739 | char base, base2,*context = NULL; | ^~~~~~~ Btk_get_mixed_bases.c:739:18: warning: variable ‘base2’ set but not used [-Wunused-but-set-variable] 739 | char base, base2,*context = NULL; | ^~~~~ Btk_get_mixed_bases.c:739:12: warning: variable ‘base’ set but not used [-Wunused-but-set-variable] 739 | char base, base2,*context = NULL; | ^~~~ Btk_get_mixed_bases.c: In function ‘Btk_get_mixed_bases’: Btk_get_mixed_bases.c:1365:31: warning: variable ‘res’ set but not used [-Wunused-but-set-variable] 1365 | double ratio, wratio, res, w1, w2; | ^~~ Btk_get_mixed_bases.c:1365:23: warning: variable ‘wratio’ set but not used [-Wunused-but-set-variable] 1365 | double ratio, wratio, res, w1, w2; | ^~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_lookup_table.c -o ../../obj/Linux_64/Btk_lookup_table.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_qv_funs.c -o ../../obj/Linux_64/Btk_qv_funs.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ABI_Toolkit.c -o ../../obj/Linux_64/ABI_Toolkit.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c Btk_default_table.c -o ../../obj/Linux_64/Btk_default_table.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c FileHandler.c -o ../../obj/Linux_64/FileHandler.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c SCF_Toolkit.c -o ../../obj/Linux_64/SCF_Toolkit.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c context_table.c -o ../../obj/Linux_64/context_table.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c tracepoly.c -o ../../obj/Linux_64/tracepoly.o tracepoly.c: In function ‘gaussj’: tracepoly.c:631:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 631 | if (ipiv[j] != 1) | ^~ tracepoly.c:641:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 641 | ++(ipiv[icol]); | ^~ tracepoly.c: In function ‘func_legendre_1based’: tracepoly.c:137:9: warning: array subscript -1 is outside array bounds of ‘double[3]’ [-Warray-bounds] 137 | func_legendre_1based_sub( fa, x, ptemp0-1, n ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:132:27: note: while referencing ‘ptemp0’ 132 | double *pl0 = pl1+1, ptemp0[2*NumCoef-1]; | ^~~~~~ tracepoly.c: In function ‘traceGetCoef.constprop’: tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of ‘double[8000]’ [-Warray-bounds] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:895:12: note: while referencing ‘xxxx’ 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~ tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of ‘double[8000]’ [-Warray-bounds] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:895:33: note: while referencing ‘yyyy’ 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~ tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of ‘double[8000]’ [-Warray-bounds] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:895:54: note: while referencing ‘sigma’ 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~~ tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of ‘double[8000]’ [-Warray-bounds] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:895:12: note: while referencing ‘xxxx’ 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~ tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of ‘double[8000]’ [-Warray-bounds] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:895:33: note: while referencing ‘yyyy’ 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~ tracepoly.c:790:5: warning: array subscript -1 is outside array bounds of ‘double[8000]’ [-Warray-bounds] 790 | lfit(fa, x-1, y-1, sig-1, n_data, a-1, ia-1, na, v, &chisq, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | func_legendre_1based); | ~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:895:54: note: while referencing ‘sigma’ 895 | double xxxx[2*MaxNumBases], yyyy[2*MaxNumBases], sigma[2*MaxNumBases]; | ^~~~~ tracepoly.c: In function ‘traceCalcCutoff’: tracepoly.c:137:9: warning: array subscript -1 is outside array bounds of ‘double[3]’ [-Warray-bounds] 137 | func_legendre_1based_sub( fa, x, ptemp0-1, n ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:132:27: note: while referencing ‘ptemp0’ 132 | double *pl0 = pl1+1, ptemp0[2*NumCoef-1]; | ^~~~~~ tracepoly.c: In function ‘traceEvalPoly’: tracepoly.c:137:9: warning: array subscript -1 is outside array bounds of ‘double[3]’ [-Warray-bounds] 137 | func_legendre_1based_sub( fa, x, ptemp0-1, n ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tracepoly.c:132:27: note: while referencing ‘ptemp0’ 132 | double *pl0 = pl1+1, ptemp0[2*NumCoef-1]; | ^~~~~~ /usr/bin/ar rc ../../lib/Linux_64/libtt.a ../../obj/Linux_64/Btk_match_data.o ../../obj/Linux_64/Btk_compute_match.o ../../obj/Linux_64/Btk_sw.o ../../obj/Linux_64/Btk_process_indels.o ../../obj/Linux_64/Btk_atod.o ../../obj/Linux_64/Btk_compute_qv.o ../../obj/Linux_64/Btk_call_bases.o ../../obj/Linux_64/Btk_process_raw_data.o ../../obj/Linux_64/util.o ../../obj/Linux_64/nr.o ../../obj/Linux_64/Btk_process_peaks.o ../../obj/Linux_64/Btk_qv_io.o ../../obj/Linux_64/Btk_compute_tp.o ../../obj/Linux_64/Btk_compute_tpars.o ../../obj/Linux_64/Btk_get_mixed_bases.o ../../obj/Linux_64/Btk_lookup_table.o ../../obj/Linux_64/Btk_qv_funs.o ../../obj/Linux_64/ABI_Toolkit.o ../../obj/Linux_64/Btk_default_table.o ../../obj/Linux_64/FileHandler.o ../../obj/Linux_64/SCF_Toolkit.o ../../obj/Linux_64/context_table.o ../../obj/Linux_64/tracepoly.o /usr/bin/gcc -g -Wall -I../mktrain -DOS_NAME='"Linux"' -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed ../../obj/Linux_64/main.o ../../lib/Linux_64/libtt.a -lm -o ../../rel/Linux_64/ttuner -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[2]: Leaving directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/compute_qv' make[2]: Entering directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/mktrain' mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c train.c -o ../../obj/Linux_64/train.o In file included from /usr/include/string.h:495, from train.c:35: In function ‘strncpy’, inlined from ‘main’ at train.c:1431:26: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at train.c:1400:23: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at train.c:1357:27: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at train.c:1511:23: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at train.c:1501:23: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at train.c:1437:23: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at train.c:1297:23: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c train_data.c -o ../../obj/Linux_64/train_data.o train_data.c: In function ‘append_to_train_data’: train_data.c:217:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 217 | if (Verbose > 0) | ^~ train_data.c:220:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 220 | fprintf(fout, "# Clear range start :%4d end:%4d\n", | ^~~~~~~ /usr/bin/gcc -g -Wall -I../compute_qv -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed ../../obj/Linux_64/train.o ../../obj/Linux_64/train_data.o ../../obj/Linux_64/Btk_compute_match.o ../../obj/Linux_64/Btk_match_data.o ../../obj/Linux_64/Btk_sw.o ../../lib/Linux_64/libtt.a -lm -o ../../rel/Linux_64/train -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I. -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c trainphd.c -o ../../obj/Linux_64/trainphd.o trainphd.c: In function ‘process_projectfile’: trainphd.c:653:13: warning: variable ‘buffer2’ set but not used [-Wunused-but-set-variable] 653 | char buffer2[BUFLEN]; | ^~~~~~~ trainphd.c: In function ‘main’: trainphd.c:931:35: error: format not a string literal and no format arguments [-Werror=format-security] 931 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:940:35: error: format not a string literal and no format arguments [-Werror=format-security] 940 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:959:39: error: format not a string literal and no format arguments [-Werror=format-security] 959 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:967:39: error: format not a string literal and no format arguments [-Werror=format-security] 967 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1011:33: error: format not a string literal and no format arguments [-Werror=format-security] 1011 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1018:33: error: format not a string literal and no format arguments [-Werror=format-security] 1018 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1084:33: error: format not a string literal and no format arguments [-Werror=format-security] 1084 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1091:33: error: format not a string literal and no format arguments [-Werror=format-security] 1091 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1123:35: error: format not a string literal and no format arguments [-Werror=format-security] 1123 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1128:35: error: format not a string literal and no format arguments [-Werror=format-security] 1128 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1134:33: error: format not a string literal and no format arguments [-Werror=format-security] 1134 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ trainphd.c:1139:33: error: format not a string literal and no format arguments [-Werror=format-security] 1139 | fprintf(stderr, message.text); | ~~~~~~~^~~~~ In file included from /usr/include/string.h:495, from trainphd.c:38: In function ‘strncpy’, inlined from ‘process_dir’ at trainphd.c:608:17, inlined from ‘main’ at trainphd.c:1095:17: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trainphd.c: In function ‘main’: trainphd.c:608:40: note: length computed here 608 | strncpy(path2, string, strlen(string)-strlen(name)); // remove the phd.1 suffix | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from trainphd.c:38: In function ‘strncpy’, inlined from ‘process_projectfile’ at trainphd.c:735:17, inlined from ‘main’ at trainphd.c:1105:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trainphd.c: In function ‘main’: trainphd.c:735:46: note: length computed here 735 | strncpy(tabFileName, string, strlen(string)-strlen(name)); // remove the phd.1 suffix | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from trainphd.c:38: In function ‘strncpy’, inlined from ‘main’ at trainphd.c:1041:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trainphd.c: In function ‘main’: trainphd.c:1041:56: note: length computed here 1041 | strncpy(tab_file_name, string, strlen(string)-strlen(name)); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from trainphd.c:38: In function ‘strncpy’, inlined from ‘main’ at trainphd.c:896:19: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at trainphd.c:856:19: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at trainphd.c:864:19: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at trainphd.c:860:19: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at trainphd.c:818:19: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at trainphd.c:822:19: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at trainphd.c:814:19: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘main’ at trainphd.c:849:19: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: some warnings being treated as errors make[2]: *** [../include.mk:180: ../../obj/Linux_64/trainphd.o] Error 1 make[2]: Leaving directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/mktrain' make[2]: Entering directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/mklut' mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c lut.c -o ../../obj/Linux_64/lut.o lut.c: In function ‘read_bases_and_populate_bins’: lut.c:438:26: warning: variable ‘cchar’ set but not used [-Wunused-but-set-variable] 438 | char schar, cchar; /* Sample and consensus characters. */ | ^~~~~ lut.c:437:25: warning: variable ‘cpos’ set but not used [-Wunused-but-set-variable] 437 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ lut.c:437:19: warning: variable ‘spos’ set but not used [-Wunused-but-set-variable] 437 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ lut.c: In function ‘create_qv_table_via_dynamic_programming’: lut.c:894:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 894 | for (i = 1; i < (MAX_QV / 10); i++) | ^~~ lut.c:899:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 899 | fprintf(fout, "\n"); | ^~~~~~~ lut.c: In function ‘compress_params_array’: lut.c:1012:13: warning: variable ‘max_weight’ set but not used [-Wunused-but-set-variable] 1012 | int max_weight=0, *wn; | ^~~~~~~~~~ lut.c: In function ‘read_and_sort_trace_parameters’: lut.c:1112:21: warning: variable ‘cchar’ set but not used [-Wunused-but-set-variable] 1112 | char schar, cchar; /* Sample and consensus characters. */ | ^~~~~ lut.c:1111:20: warning: variable ‘cpos’ set but not used [-Wunused-but-set-variable] 1111 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ lut.c:1111:14: warning: variable ‘spos’ set but not used [-Wunused-but-set-variable] 1111 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ lut.c: In function ‘main’: lut.c:1404:15: warning: passing argument 1 of ‘time’ makes pointer from integer without a cast [-Wint-conversion] 1404 | t1 = time((time_t) NULL); | ^ | | | long int In file included from lut.c:45: /usr/include/time.h:75:29: note: expected ‘time_t *’ {aka ‘long int *’} but argument is of type ‘long int’ 75 | extern time_t time (time_t *__timer) __THROW; | ~~~~~~~~^~~~~~~ lut.c:1449:34: warning: format ‘%d’ expects argument of type ‘int *’, but argument 3 has type ‘unsigned int *’ [-Wformat=] 1449 | sscanf(optarg, "%d", &threshold_count); | ~^ ~~~~~~~~~~~~~~~~ | | | | | unsigned int * | int * | %d lut.c:1520:15: warning: passing argument 1 of ‘time’ makes pointer from integer without a cast [-Wint-conversion] 1520 | t2 = time((time_t) NULL); | ^ | | | long int In file included from lut.c:45: /usr/include/time.h:75:29: note: expected ‘time_t *’ {aka ‘long int *’} but argument is of type ‘long int’ 75 | extern time_t time (time_t *__timer) __THROW; | ~~~~~~~~^~~~~~~ lut.c:1573:15: warning: passing argument 1 of ‘time’ makes pointer from integer without a cast [-Wint-conversion] 1573 | t2 = time((time_t) NULL); | ^ | | | long int In file included from lut.c:45: /usr/include/time.h:75:29: note: expected ‘time_t *’ {aka ‘long int *’} but argument is of type ‘long int’ 75 | extern time_t time (time_t *__timer) __THROW; | ~~~~~~~~^~~~~~~ lut.c:1604:15: warning: passing argument 1 of ‘time’ makes pointer from integer without a cast [-Wint-conversion] 1604 | t2 = time((time_t) NULL); | ^ | | | long int In file included from lut.c:45: /usr/include/time.h:75:29: note: expected ‘time_t *’ {aka ‘long int *’} but argument is of type ‘long int’ 75 | extern time_t time (time_t *__timer) __THROW; | ~~~~~~~~^~~~~~~ lut.c:1645:15: warning: passing argument 1 of ‘time’ makes pointer from integer without a cast [-Wint-conversion] 1645 | t2 = time((time_t) NULL); | ^ | | | long int In file included from lut.c:45: /usr/include/time.h:75:29: note: expected ‘time_t *’ {aka ‘long int *’} but argument is of type ‘long int’ 75 | extern time_t time (time_t *__timer) __THROW; | ~~~~~~~~^~~~~~~ In file included from /usr/include/string.h:495, from lut.c:46: In function ‘strncpy’, inlined from ‘main’ at lut.c:1459:23: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c select.c -o ../../obj/Linux_64/select.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c func_name.c -o ../../obj/Linux_64/func_name.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c get_thresholds.c -o ../../obj/Linux_64/get_thresholds.o mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I. -I/home/gdenisov/build/include/io_lib -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -I../mkchk -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c ../mkchk/check_data.c -o ../../obj/Linux_64/check_data.o ../mkchk/check_data.c: In function ‘get_bases’: ../mkchk/check_data.c:47:25: warning: variable ‘cpos’ set but not used [-Wunused-but-set-variable] 47 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ ../mkchk/check_data.c:47:19: warning: variable ‘spos’ set but not used [-Wunused-but-set-variable] 47 | int spos, cpos; /* Sample and consensus positions. */ | ^~~~ g++ ../../obj/Linux_64/lut.o ../../obj/Linux_64/select.o ../../obj/Linux_64/func_name.o ../../obj/Linux_64/get_thresholds.o ../../obj/Linux_64/check_data.o -o ../../rel/Linux_64/lut -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[2]: Leaving directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/mklut' make[2]: Entering directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/mkchk' mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c checkbc.c -o ../../obj/Linux_64/checkbc.o g++ ../../obj/Linux_64/checkbc.o ../../obj/Linux_64/check_data.o ../../lib/Linux_64/libtt.a -lm -lz -o ../../rel/Linux_64/checkbc -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c checkqv.c -o ../../obj/Linux_64/checkqv.o checkqv.c: In function ‘crossValidate’: checkqv.c:84:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 84 | if (base[i].schar != '-') | ^~ checkqv.c:87:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 87 | qv = get_quality_value(base[i].parameter[0], | ^~ g++ ../../obj/Linux_64/checkqv.o ../../obj/Linux_64/check_data.o ../../lib/Linux_64/libtt.a -lm -lz -o ../../rel/Linux_64/checkqv -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c checkbcphd.c -o ../../obj/Linux_64/checkbcphd.o checkbcphd.c: In function ‘errorStatswithQVs’: checkbcphd.c:197:18: warning: unknown escape sequence: '\%' 197 | char c = '\%'; | ^~~~ checkbcphd.c:50:51: warning: variable ‘qvo’ set but not used [-Wunused-but-set-variable] 50 | Nqvp[MAXNUMBINS+1], qvp[MAXNUMBINS+1], qvo[MAXNUMBINS+1]; | ^~~ checkbcphd.c:50:32: warning: variable ‘qvp’ set but not used [-Wunused-but-set-variable] 50 | Nqvp[MAXNUMBINS+1], qvp[MAXNUMBINS+1], qvo[MAXNUMBINS+1]; | ^~~ g++ ../../obj/Linux_64/checkbcphd.o ../../obj/Linux_64/check_data.o ../../lib/Linux_64/libtt.a -lm -lz -o ../../rel/Linux_64/checkbcphd -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed mkdir -p ../../obj/Linux_64 /usr/bin/gcc -g -Wall -I../compute_qv -I../mktrain -I../mklut -I. -I -I../../../jtc_tt -I. -I../../../io_lib -I../../../io_lib/utils -g -O2 -fdebug-prefix-map=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -c checkqvphd.c -o ../../obj/Linux_64/checkqvphd.o g++ ../../obj/Linux_64/checkqvphd.o ../../obj/Linux_64/check_data.o ../../lib/Linux_64/libtt.a -lm -lz -o ../../rel/Linux_64/checkqvphd -lm -lz ../../lib/Linux_64/libtt.a -Wl,-z,relro -Wl,-z,now -Wl,--as-needed make[2]: Leaving directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src/mkchk' make[1]: Leaving directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/src' dh_auto_test -a -O--sourcedirectory=src -O--no-parallel rm -fr -- /tmp/dh-xdg-rundir-rIhkgehI create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src -O--no-parallel dh_prep -a -O--sourcedirectory=src -O--no-parallel rm -f -- debian/tracetuner.substvars rm -fr -- debian/.debhelper/generated/tracetuner/ debian/tracetuner/ debian/tmp/ dh_installdirs -a -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/usr/bin debian/rules override_dh_auto_install make[1]: Entering directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg' dh_auto_install find rel -mindepth 2 -type f | xargs -r mv --target-directory=/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg/debian/tracetuner/usr/bin/ make[1]: Leaving directory '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg' dh_installdocs -a -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/usr/share/doc/tracetuner install -d debian/.debhelper/generated/tracetuner cp --reflink=auto -a ./src/README debian/tracetuner/usr/share/doc/tracetuner cp --reflink=auto -a ./doc/RELEASE_NOTES debian/tracetuner/usr/share/doc/tracetuner chmod -R u\+rw,go=rX debian/tracetuner/usr/share/doc install -p -m0644 debian/README.Debian debian/tracetuner/usr/share/doc/tracetuner/README.Debian install -p -m0644 debian/copyright debian/tracetuner/usr/share/doc/tracetuner/copyright dh_installchangelogs -a -O--sourcedirectory=src -O--no-parallel install -p -m0644 debian/changelog debian/tracetuner/usr/share/doc/tracetuner/changelog.Debian dh_installman -a -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/usr/share/man/man1/ install -p -m0644 ./debian/mans/train.1 debian/tracetuner/usr/share/man/man1/train.1 install -p -m0644 ./debian/mans/trainphd.1 debian/tracetuner/usr/share/man/man1/trainphd.1 install -p -m0644 ./debian/mans/ttuner.1 debian/tracetuner/usr/share/man/man1/ttuner.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tracetuner/usr/share/man/man1/train.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tracetuner/usr/share/man/man1/trainphd.1 man-recode --to-code UTF-8 --suffix .dh-new debian/tracetuner/usr/share/man/man1/ttuner.1 mv debian/tracetuner/usr/share/man/man1/ttuner.1.dh-new debian/tracetuner/usr/share/man/man1/ttuner.1 chmod 0644 -- debian/tracetuner/usr/share/man/man1/ttuner.1 mv debian/tracetuner/usr/share/man/man1/trainphd.1.dh-new debian/tracetuner/usr/share/man/man1/trainphd.1 chmod 0644 -- debian/tracetuner/usr/share/man/man1/trainphd.1 mv debian/tracetuner/usr/share/man/man1/train.1.dh-new debian/tracetuner/usr/share/man/man1/train.1 chmod 0644 -- debian/tracetuner/usr/share/man/man1/train.1 dh_installsystemduser -a -O--sourcedirectory=src -O--no-parallel dh_perl -a -O--sourcedirectory=src -O--no-parallel dh_link -a -O--sourcedirectory=src -O--no-parallel dh_strip_nondeterminism -a -O--sourcedirectory=src -O--no-parallel dh_compress -a -O--sourcedirectory=src -O--no-parallel cd debian/tracetuner chmod a-x usr/share/doc/tracetuner/README usr/share/doc/tracetuner/RELEASE_NOTES usr/share/doc/tracetuner/changelog.Debian usr/share/man/man1/train.1 usr/share/man/man1/trainphd.1 usr/share/man/man1/ttuner.1 gzip -9nf usr/share/doc/tracetuner/README usr/share/doc/tracetuner/RELEASE_NOTES usr/share/doc/tracetuner/changelog.Debian usr/share/man/man1/train.1 usr/share/man/man1/trainphd.1 usr/share/man/man1/ttuner.1 cd '/build/tracetuner-iPPB1J/tracetuner-3.0.6-beta+dfsg' dh_fixperms -a -O--sourcedirectory=src -O--no-parallel find debian/tracetuner ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tracetuner/usr/share/doc -type f -a -true -a ! -regex 'debian/tracetuner/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tracetuner/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tracetuner/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tracetuner -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tracetuner/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a -O--sourcedirectory=src -O--no-parallel dh_dwz -a -a -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/tracetuner/usr/lib/debug/.dwz/x86_64-linux-gnu/tracetuner.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/tracetuner.debug -- debian/tracetuner/usr/bin/checkbc debian/tracetuner/usr/bin/checkbcphd debian/tracetuner/usr/bin/checkqv debian/tracetuner/usr/bin/checkqvphd debian/tracetuner/usr/bin/lut debian/tracetuner/usr/bin/train debian/tracetuner/usr/bin/ttuner objcopy --compress-debug-sections debian/tracetuner/usr/lib/debug/.dwz/x86_64-linux-gnu/tracetuner.debug dh_strip -a -a -O--sourcedirectory=src -O--no-parallel install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/train debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/8d/882058bf80438bfc272683cddc6c3a1c453fee.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/8d/882058bf80438bfc272683cddc6c3a1c453fee.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/train objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/8d/882058bf80438bfc272683cddc6c3a1c453fee.debug debian/tracetuner/usr/bin/train install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/e8 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkqv debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/e8/501af22e14ffc0e2878f712f75b7dc663755e7.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/e8/501af22e14ffc0e2878f712f75b7dc663755e7.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkqv objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/e8/501af22e14ffc0e2878f712f75b7dc663755e7.debug debian/tracetuner/usr/bin/checkqv install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/66 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/ttuner debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/66/16b48d943ef861e04893c5f9cd13f934d10554.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/66/16b48d943ef861e04893c5f9cd13f934d10554.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/ttuner objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/66/16b48d943ef861e04893c5f9cd13f934d10554.debug debian/tracetuner/usr/bin/ttuner install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/28 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkbcphd debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/28/463d89686877748c5484575733e4b04162960a.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/28/463d89686877748c5484575733e4b04162960a.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkbcphd objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/28/463d89686877748c5484575733e4b04162960a.debug debian/tracetuner/usr/bin/checkbcphd install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/c3 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/lut debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/c3/a9370c440d38e38def09e1cb9319a2f8a2de2a.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/c3/a9370c440d38e38def09e1cb9319a2f8a2de2a.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/lut objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/c3/a9370c440d38e38def09e1cb9319a2f8a2de2a.debug debian/tracetuner/usr/bin/lut install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/f0 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkbc debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/f0/a194c24df651180a67088d6d40f43fdc4702e0.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/f0/a194c24df651180a67088d6d40f43fdc4702e0.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkbc objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/f0/a194c24df651180a67088d6d40f43fdc4702e0.debug debian/tracetuner/usr/bin/checkbc install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/d3 objcopy --only-keep-debug --compress-debug-sections debian/tracetuner/usr/bin/checkqvphd debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/d3/e3bab0e9917eacfc1ae4149fd8f1a84d75b0bb.debug chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/d3/e3bab0e9917eacfc1ae4149fd8f1a84d75b0bb.debug strip --remove-section=.comment --remove-section=.note debian/tracetuner/usr/bin/checkqvphd objcopy --add-gnu-debuglink debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.build-id/d3/e3bab0e9917eacfc1ae4149fd8f1a84d75b0bb.debug debian/tracetuner/usr/bin/checkqvphd install -d debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/tracetuner/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/tracetuner/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/tracetuner/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/tracetuner/usr/lib/debug install -d debian/.debhelper/tracetuner/dbgsym-root/usr/share/doc ln -s tracetuner debian/.debhelper/tracetuner/dbgsym-root/usr/share/doc/tracetuner-dbgsym dh_makeshlibs -a -a -O--sourcedirectory=src -O--no-parallel rm -f debian/tracetuner/DEBIAN/shlibs dh_shlibdeps -a -a -O--sourcedirectory=src -O--no-parallel install -d debian/tracetuner/DEBIAN dpkg-shlibdeps -Tdebian/tracetuner.substvars debian/tracetuner/usr/bin/train debian/tracetuner/usr/bin/checkqv debian/tracetuner/usr/bin/ttuner debian/tracetuner/usr/bin/checkbcphd debian/tracetuner/usr/bin/lut debian/tracetuner/usr/bin/checkbc debian/tracetuner/usr/bin/checkqvphd dh_installdeb -a -O--sourcedirectory=src -O--no-parallel dh_gencontrol -a -O--sourcedirectory=src -O--no-parallel echo misc:Depends= >> debian/tracetuner.substvars echo misc:Pre-Depends= >> debian/tracetuner.substvars install -d debian/.debhelper/tracetuner/dbgsym-root/DEBIAN dpkg-gencontrol -ptracetuner -ldebian/changelog -Tdebian/tracetuner.substvars -Pdebian/.debhelper/tracetuner/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=tracetuner-dbgsym "-DDepends=tracetuner (= \${binary:Version})" "-DDescription=debug symbols for tracetuner" "-DBuild-Ids=28463d89686877748c5484575733e4b04162960a 6616b48d943ef861e04893c5f9cd13f934d10554 8d882058bf80438bfc272683cddc6c3a1c453fee c3a9370c440d38e38def09e1cb9319a2f8a2de2a d3e3bab0e9917eacfc1ae4149fd8f1a84d75b0bb e8501af22e14ffc0e2878f712f75b7dc663755e7 f0a194c24df651180a67088d6d40f43fdc4702e0" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptracetuner -ldebian/changelog -Tdebian/tracetuner.substvars -Pdebian/tracetuner chmod 0644 -- debian/tracetuner/DEBIAN/control dh_md5sums -a -O--sourcedirectory=src -O--no-parallel cd debian/tracetuner >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/tracetuner/DEBIAN/md5sums cd debian/.debhelper/tracetuner/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/tracetuner/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--sourcedirectory=src -O--no-parallel dpkg-deb --root-owner-group --build debian/tracetuner .. dpkg-deb --root-owner-group --build debian/.debhelper/tracetuner/dbgsym-root .. dpkg-deb: building package 'tracetuner' in '../tracetuner_3.0.6~beta+dfsg-3_amd64.deb'. dpkg-deb: building package 'tracetuner-dbgsym' in '../tracetuner-dbgsym_3.0.6~beta+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../tracetuner_3.0.6~beta+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/tracetuner-iPPB1J /tmp/tracetuner-3.0.6~beta+dfsg-3w2pm2vx0 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.sRKmaHwXis... I: success in 459.8483 seconds md5: tracetuner-dbgsym_3.0.6~beta+dfsg-3_amd64.deb: OK md5: tracetuner_3.0.6~beta+dfsg-3_amd64.deb: OK sha1: tracetuner-dbgsym_3.0.6~beta+dfsg-3_amd64.deb: OK sha1: tracetuner_3.0.6~beta+dfsg-3_amd64.deb: OK sha256: tracetuner-dbgsym_3.0.6~beta+dfsg-3_amd64.deb: OK sha256: tracetuner_3.0.6~beta+dfsg-3_amd64.deb: OK Checksums: OK