Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/t/tiddit/tiddit_2.12.2+dfsg-1+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/tiddit-2.12.2+dfsg-1+b13ygam0es/tiddit_2.12.2+dfsg-1+b1_amd64.buildinfo Get source package info: tiddit=2.12.2+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/tiddit/2.12.2+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.38-3 binutils-common=2.38-3 binutils-x86-64-linux-gnu=2.38-3 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 cmake=3.22.1-1+b1 cmake-data=3.22.1-1 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-19 cython3=0.29.28-3 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-python=5.20220215 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.4 dpkg-dev=1.21.4 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-3 findutils=4.9.0-2 g++=4:11.2.0-2 g++-11=11.2.0-19 gcc=4:11.2.0-2 gcc-11=11.2.0-19 gcc-11-base=11.2.0-19 gcc-12-base=12-20220319-1 gettext=0.21-6 gettext-base=0.21-6 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libarchive13=3.5.2-1 libasan6=11.2.0-19 libatomic1=12-20220319-1 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libbamtools-dev=2.5.1+dfsg-10+b1 libbamtools2.5.1=2.5.1+dfsg-10+b1 libbinutils=2.38-3 libblkid1=2.37.3-1+b1 libbrotli1=1.0.9-2+b3 libbz2-1.0=1.0.8-5 libc-bin=2.33-7 libc-dev-bin=2.33-7 libc6=2.33-7 libc6-dev=2.33-7 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=12-20220319-1 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-3 libctf0=2.38-3 libcurl4=7.82.0-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdpkg-perl=1.21.4 libelf1=0.186-1 libexpat1=2.4.7-1 libexpat1-dev=2.4.7-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.2.0-19 libgcc-s1=12-20220319-1 libgcrypt20=1.9.4-5 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.3-4+b1 libgomp1=12-20220319-1 libgpg-error0=1.43-3 libgssapi-krb5-2=1.19.2-2+b1 libhogweed6=3.7.3-1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=12-20220319-1 libjs-jquery=3.6.0+dfsg+~3.5.13-1 libjs-sphinxdoc=4.3.2-1 libjs-underscore=1.13.2~dfsg-2 libjsoncpp25=1.9.5-3 libk5crypto3=1.19.2-2+b1 libkeyutils1=1.6.1-3 libkrb5-3=1.19.2-2+b1 libkrb5support0=1.19.2-2+b1 libldap-2.5-0=2.5.11+dfsg-1 liblsan0=12-20220319-1 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-3 libmagic1=1:5.41-3 libmount1=2.37.3-1+b1 libmpc3=1.2.1-2 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.3-2 libncursesw6=6.3-2 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.34=5.34.0-3 libpipeline1=1.5.5-1 libprocps8=2:3.3.17-7+b1 libpsl5=0.21.0-1.2 libpython3-dev=3.10.4-1 libpython3-stdlib=3.10.4-1 libpython3.10=3.10.4-1 libpython3.10-dev=3.10.4-1 libpython3.10-minimal=3.10.4-1 libpython3.10-stdlib=3.10.4-1 libquadmath0=12-20220319-1 libreadline8=8.1.2-1 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.28+dfsg-2+b1 libsasl2-modules-db=2.1.28+dfsg-2+b1 libseccomp2=2.5.3-2 libselinux1=3.3-1+b2 libsigsegv2=2.14-1 libsmartcols1=2.37.3-1+b1 libsqlite3-0=3.38.1-1 libssh2-1=1.10.0-3 libssl1.1=1.1.1n-1 libstdc++-11-dev=11.2.0-19 libstdc++6=12-20220319-1 libsub-override-perl=0.09-2 libsystemd0=250.4-1 libtasn1-6=4.18.0-4 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-2 libtsan0=11.2.0-19 libubsan1=12-20220319-1 libuchardet0=0.0.7-1 libudev1=250.4-1 libunistring2=1.0-1 libuuid1=2.37.3-1+b1 libuv1=1.44.1-2 libxml2=2.9.13+dfsg-1 libzstd1=1.4.9+dfsg-1 linux-libc-dev=5.16.14-1 login=1:4.11.1+dfsg1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3+b1 media-types=7.0.0 ncurses-base=6.3-2 ncurses-bin=6.3-2 patch=2.7.6-7 perl=5.34.0-3 perl-base=5.34.0-3 perl-modules-5.34=5.34.0-3 po-debconf=1.0.21+nmu1 procps=2:3.3.17-7+b1 python3=3.10.4-1 python3-dev=3.10.4-1 python3-distutils=3.9.12-1 python3-lib2to3=3.9.12-1 python3-minimal=3.10.4-1 python3.10=3.10.4-1 python3.10-dev=3.10.4-1 python3.10-minimal=3.10.4-1 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 util-linux=2.37.3-1+b1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211106T025313Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211106T025313Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220328T160411Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d tiddit=2.12.2+dfsg-1 && mkdir -p /build/tiddit-tPoXIf && dpkg-source --no-check -x /*.dsc /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg && cd /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg && { printf '%s' 'tiddit (2.12.2+dfsg-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.10 as default -- all / amd64 / i386 Build Daemon (x86-conova-01) Mon, 28 Mar 2022 11:18:58 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/tiddit-tPoXIf" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1648466338" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/tiddit-tPoXIf /tmp/tiddit-2.12.2+dfsg-1+b13ygam0es bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220328T160411Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.LTH_55yiea as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.LTH_55yiea Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220328T160411Z unstable/main amd64 libfakeroot amd64 1.28-1 [48.2 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220328T160411Z unstable/main amd64 fakeroot amd64 1.28-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (1038 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4702 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.28-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.28-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.28-1_amd64.deb ... Unpacking fakeroot (1.28-1) ... Setting up libfakeroot:amd64 (1.28-1) ... Setting up fakeroot (1.28-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211106T025313Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211106T025313Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220328T160411Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.LTH_55yiea Get:1 http://snapshot.notset.fr/archive/debian/20211106T025313Z bookworm InRelease [128 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220328T160411Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211106T025313Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211106T025313Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211106T025313Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211106T025313Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211106T025313Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211106T025313Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211106T025313Z bookworm/main Sources [11.7 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211106T025313Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.0 MB in 19s (1236 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.LTH_55yiea I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d tiddit=2.12.2+dfsg-1 && mkdir -p /build/tiddit-tPoXIf && dpkg-source --no-check -x /*.dsc /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg && cd /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg && { printf '%s' 'tiddit (2.12.2+dfsg-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.10 as default -- all / amd64 / i386 Build Daemon (x86-conova-01) Mon, 28 Mar 2022 11:18:58 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/tiddit-tPoXIf"' exec /tmp/mmdebstrap.LTH_55yiea Reading package lists... NOTICE: 'tiddit' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/tiddit.git Please use: git clone https://salsa.debian.org/med-team/tiddit.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1761 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211106T025313Z bookworm/main tiddit 2.12.2+dfsg-1 (dsc) [2118 B] Get:2 http://snapshot.notset.fr/archive/debian/20211106T025313Z bookworm/main tiddit 2.12.2+dfsg-1 (tar) [26.1 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211106T025313Z bookworm/main tiddit 2.12.2+dfsg-1 (diff) [1733 kB] Fetched 1761 kB in 1s (1267 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'tiddit_2.12.2+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting tiddit in /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg dpkg-source: info: unpacking tiddit_2.12.2+dfsg.orig.tar.xz dpkg-source: info: unpacking tiddit_2.12.2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying Fix-tiddit-binary-location.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1648466338" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.LTH_55yiea dpkg-buildpackage: info: source package tiddit dpkg-buildpackage: info: source version 2.12.2+dfsg-1+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary-arch dh binary-arch --with python3 --buildsystem=cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg' dh_auto_configure -- -DCMAKE_BUILD_TYPE=RelWithDebInfo cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=RelWithDebInfo .. CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 11.2.0 -- The CXX compiler identification is GNU 11.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu dh_auto_configure --sourcedirectory=src --buildsystem=pybuild I: pybuild base:237: python3.10 setup.py config /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src/setup.py:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src/DBSCAN.py tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src/TIDDIT_calling.py tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src/TIDDIT_coverage.py tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src/TIDDIT_filtering.py tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src/TIDDIT_signals.py tree = Parsing.p_module(s, pxd, full_module_name) Compiling TIDDIT_calling.py because it changed. Compiling TIDDIT_coverage.py because it changed. Compiling TIDDIT_filtering.py because it changed. Compiling TIDDIT_signals.py because it changed. Compiling DBSCAN.py because it changed. [1/5] Cythonizing DBSCAN.py [2/5] Cythonizing TIDDIT_calling.py [3/5] Cythonizing TIDDIT_coverage.py [4/5] Cythonizing TIDDIT_filtering.py [5/5] Cythonizing TIDDIT_signals.py running config make[1]: Leaving directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg' sed -i 's/betwen/between/' src/data_structures/Translocation.cpp dh_auto_build cd obj-x86_64-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg -B/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/TIDDIT.dir/build.make CMakeFiles/TIDDIT.dir/depend make[4]: Entering directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu' cd /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles/TIDDIT.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/TIDDIT.dir/build.make CMakeFiles/TIDDIT.dir/build make[4]: Entering directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu' [ 20%] Building CXX object CMakeFiles/TIDDIT.dir/src/TIDDIT.cpp.o /usr/bin/c++ -I/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-deprecated -MD -MT CMakeFiles/TIDDIT.dir/src/TIDDIT.cpp.o -MF CMakeFiles/TIDDIT.dir/src/TIDDIT.cpp.o.d -o CMakeFiles/TIDDIT.dir/src/TIDDIT.cpp.o -c /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src/TIDDIT.cpp [ 40%] Building CXX object CMakeFiles/TIDDIT.dir/src/data_structures/Translocation.cpp.o [ 60%] Building CXX object CMakeFiles/TIDDIT.dir/src/data_structures/CoverageModule.cpp.o [ 80%] Building CXX object CMakeFiles/TIDDIT.dir/src/data_structures/findTranslocationsOnTheFly.cpp.o /usr/bin/c++ -I/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-deprecated -MD -MT CMakeFiles/TIDDIT.dir/src/data_structures/Translocation.cpp.o -MF CMakeFiles/TIDDIT.dir/src/data_structures/Translocation.cpp.o.d -o CMakeFiles/TIDDIT.dir/src/data_structures/Translocation.cpp.o -c /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src/data_structures/Translocation.cpp /usr/bin/c++ -I/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-deprecated -MD -MT CMakeFiles/TIDDIT.dir/src/data_structures/findTranslocationsOnTheFly.cpp.o -MF CMakeFiles/TIDDIT.dir/src/data_structures/findTranslocationsOnTheFly.cpp.o.d -o CMakeFiles/TIDDIT.dir/src/data_structures/findTranslocationsOnTheFly.cpp.o -c /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src/data_structures/findTranslocationsOnTheFly.cpp /usr/bin/c++ -I/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src -I/usr/include/bamtools -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wno-deprecated -MD -MT CMakeFiles/TIDDIT.dir/src/data_structures/CoverageModule.cpp.o -MF CMakeFiles/TIDDIT.dir/src/data_structures/CoverageModule.cpp.o.d -o CMakeFiles/TIDDIT.dir/src/data_structures/CoverageModule.cpp.o -c /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src/data_structures/CoverageModule.cpp [100%] Linking CXX executable ../bin/TIDDIT /usr/bin/cmake -E cmake_link_script CMakeFiles/TIDDIT.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/TIDDIT.dir/src/TIDDIT.cpp.o CMakeFiles/TIDDIT.dir/src/data_structures/CoverageModule.cpp.o CMakeFiles/TIDDIT.dir/src/data_structures/Translocation.cpp.o CMakeFiles/TIDDIT.dir/src/data_structures/findTranslocationsOnTheFly.cpp.o -o ../bin/TIDDIT -lbamtools make[4]: Leaving directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu' [100%] Built target TIDDIT make[3]: Leaving directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/obj-x86_64-linux-gnu' dh_auto_build --sourcedirectory=src --buildsystem=pybuild I: pybuild base:237: /usr/bin/python3 setup.py build /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src/setup.py:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup running build running build_ext building 'TIDDIT_calling' extension creating build creating build/temp.linux-x86_64-3.10 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c TIDDIT_calling.c -o build/temp.linux-x86_64-3.10/TIDDIT_calling.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/TIDDIT_calling.o -o /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/.pybuild/cpython3_3.10/build/TIDDIT_calling.cpython-310-x86_64-linux-gnu.so building 'TIDDIT_coverage' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c TIDDIT_coverage.c -o build/temp.linux-x86_64-3.10/TIDDIT_coverage.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/TIDDIT_coverage.o -o /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/.pybuild/cpython3_3.10/build/TIDDIT_coverage.cpython-310-x86_64-linux-gnu.so building 'TIDDIT_filtering' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c TIDDIT_filtering.c -o build/temp.linux-x86_64-3.10/TIDDIT_filtering.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/TIDDIT_filtering.o -o /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/.pybuild/cpython3_3.10/build/TIDDIT_filtering.cpython-310-x86_64-linux-gnu.so building 'TIDDIT_signals' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c TIDDIT_signals.c -o build/temp.linux-x86_64-3.10/TIDDIT_signals.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/TIDDIT_signals.o -o /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/.pybuild/cpython3_3.10/build/TIDDIT_signals.cpython-310-x86_64-linux-gnu.so building 'DBSCAN' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c DBSCAN.c -o build/temp.linux-x86_64-3.10/DBSCAN.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/DBSCAN.o -o /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/.pybuild/cpython3_3.10/build/DBSCAN.cpython-310-x86_64-linux-gnu.so make[1]: Leaving directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg' dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=cmake" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake debian/rules override_dh_auto_install make[1]: Entering directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg' dh_auto_install dh_auto_install --sourcedirectory=src --buildsystem=pybuild I: pybuild base:237: /usr/bin/python3 setup.py install --root /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/debian/tiddit /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/src/setup.py:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup running install running build running build_ext running install_lib creating /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/debian/tiddit/usr creating /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/debian/tiddit/usr/lib creating /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/debian/tiddit/usr/lib/python3.10 creating /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/debian/tiddit/usr/lib/python3.10/dist-packages copying /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/.pybuild/cpython3_3.10/build/TIDDIT_calling.cpython-310-x86_64-linux-gnu.so -> /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/debian/tiddit/usr/lib/python3.10/dist-packages copying /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/.pybuild/cpython3_3.10/build/TIDDIT_coverage.cpython-310-x86_64-linux-gnu.so -> /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/debian/tiddit/usr/lib/python3.10/dist-packages copying /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/.pybuild/cpython3_3.10/build/TIDDIT_filtering.cpython-310-x86_64-linux-gnu.so -> /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/debian/tiddit/usr/lib/python3.10/dist-packages copying /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/.pybuild/cpython3_3.10/build/TIDDIT_signals.cpython-310-x86_64-linux-gnu.so -> /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/debian/tiddit/usr/lib/python3.10/dist-packages copying /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/.pybuild/cpython3_3.10/build/DBSCAN.cpython-310-x86_64-linux-gnu.so -> /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/debian/tiddit/usr/lib/python3.10/dist-packages running install_egg_info Writing /build/tiddit-tPoXIf/tiddit-2.12.2+dfsg/debian/tiddit/usr/lib/python3.10/dist-packages/TIDDIT-0.0.0.egg-info make[1]: Leaving directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg' dh_install -a -O--buildsystem=cmake dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake debian/rules override_dh_installman make[1]: Entering directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg' dh_installman --language=C make[1]: Leaving directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg' debian/rules override_dh_python3 make[1]: Entering directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg' dh_python3 --shebang=/usr/bin/python3 I: dh_python3 tools:114: replacing shebang in debian/tiddit/usr/bin/TIDDIT.py make[1]: Leaving directory '/build/tiddit-tPoXIf/tiddit-2.12.2+dfsg' dh_installsystemduser -a -O--buildsystem=cmake dh_lintian -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake dh_fixperms -a -O--buildsystem=cmake dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dwz: debian/tiddit/usr/bin/TIDDIT: DWARF compression not beneficial - old size 1875494 new size 1882678 dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -a -O--buildsystem=cmake dh_gencontrol -a -O--buildsystem=cmake dpkg-gencontrol: warning: package tiddit: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package tiddit: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'tiddit-dbgsym' in '../tiddit-dbgsym_2.12.2+dfsg-1+b1_amd64.deb'. dpkg-deb: building package 'tiddit' in '../tiddit_2.12.2+dfsg-1+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../tiddit_2.12.2+dfsg-1+b1_amd64.buildinfo dpkg-genchanges --build=any -O../tiddit_2.12.2+dfsg-1+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/tiddit-tPoXIf /tmp/tiddit-2.12.2+dfsg-1+b13ygam0es I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.LTH_55yiea... I: success in 332.3137 seconds md5: tiddit-dbgsym_2.12.2+dfsg-1+b1_amd64.deb: OK md5: tiddit_2.12.2+dfsg-1+b1_amd64.deb: OK sha1: tiddit-dbgsym_2.12.2+dfsg-1+b1_amd64.deb: OK sha1: tiddit_2.12.2+dfsg-1+b1_amd64.deb: OK sha256: tiddit-dbgsym_2.12.2+dfsg-1+b1_amd64.deb: OK sha256: tiddit_2.12.2+dfsg-1+b1_amd64.deb: OK Checksums: OK