Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/t/theseus/theseus_3.3.0-11_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/theseus-3.3.0-11dmlk0mz_/theseus_3.3.0-11_amd64.buildinfo Get source package info: theseus=3.3.0-11 Source URL: http://snapshot.notset.fr/mr/package/theseus/3.3.0-11/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.90.20220130-2 binutils-common=2.37.90.20220130-2 binutils-x86-64-linux-gnu=2.37.90.20220130-2 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-16 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 dh-autoreconf=20 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-16 gcc=4:11.2.0-2 gcc-11=11.2.0-16 gcc-11-base=11.2.0-16 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-16 libatomic1=11.2.0-16 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37.90.20220130-2 libblkid1=2.37.3-1+b1 libbz2-1.0=1.0.8-5 libc-bin=2.33-5 libc-dev-bin=2.33-5 libc6=2.33-5 libc6-dev=2.33-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-16 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.37.90.20220130-2 libctf0=2.37.90.20220130-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdpkg-perl=1.21.1 libelf1=0.186-1 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.2.0-16 libgcc-s1=11.2.0-16 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgmp10=2:6.2.1+dfsg-3 libgomp1=11.2.0-16 libgpg-error0=1.43-3 libgsl-dev=2.7.1+dfsg-3 libgsl27=2.7.1+dfsg-3 libgslcblas0=2.7.1+dfsg-3 libgssapi-krb5-2=1.18.3-7 libicu67=67.1-7 libisl23=0.24-2 libitm1=11.2.0-16 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblsan0=11.2.0-16 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmount1=2.37.3-1+b1 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.34=5.34.0-3 libpipeline1=1.5.5-1 libquadmath0=11.2.0-16 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.14-1 libsmartcols1=2.37.3-1+b1 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-16 libstdc++6=11.2.0-16 libsub-override-perl=0.09-2 libsystemd0=250.3-2 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-16 libubsan1=11.2.0-16 libuchardet0=0.0.7-1 libudev1=250.3-2 libunistring2=0.9.10-6 libuuid1=2.37.3-1+b1 libxml2=2.9.12+dfsg-5+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.16.7-1 login=1:4.11.1+dfsg1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.0-2 mawk=1.3.4.20200120-3+b1 ncurses-base=6.3-2 ncurses-bin=6.3-2 patch=2.7.6-7 perl=5.34.0-3 perl-base=5.34.0-3 perl-modules-5.34=5.34.0-3 po-debconf=1.0.21+nmu1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 util-linux=2.37.3-1+b1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220302T025935Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220302T025935Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220206T214258Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d theseus=3.3.0-11 && mkdir -p /build/theseus-jzXdL9 && dpkg-source --no-check -x /*.dsc /build/theseus-jzXdL9/theseus-3.3.0 && chown -R builduser:builduser /build/theseus-jzXdL9" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/theseus-jzXdL9/theseus-3.3.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1643559509" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/theseus-jzXdL9 /tmp/theseus-3.3.0-11dmlk0mz_ bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220206T214258Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.BiLnzsyYUp as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.BiLnzsyYUp Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220206T214258Z unstable/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220206T214258Z unstable/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (1024 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4697 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220302T025935Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220302T025935Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220206T214258Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.BiLnzsyYUp Get:1 http://snapshot.notset.fr/archive/debian/20220302T025935Z bookworm InRelease [130 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220206T214258Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20220302T025935Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220302T025935Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220302T025935Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220302T025935Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220302T025935Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220302T025935Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20220302T025935Z bookworm/main Sources [11.9 MB] Get:4 http://snapshot.notset.fr/archive/debian/20220302T025935Z bookworm/main amd64 Packages [11.3 MB] Fetched 23.3 MB in 19s (1210 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.BiLnzsyYUp I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d theseus=3.3.0-11 && mkdir -p /build/theseus-jzXdL9 && dpkg-source --no-check -x /*.dsc /build/theseus-jzXdL9/theseus-3.3.0 && chown -R builduser:builduser /build/theseus-jzXdL9"' exec /tmp/mmdebstrap.BiLnzsyYUp Reading package lists... NOTICE: 'theseus' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/theseus.git Please use: git clone https://salsa.debian.org/med-team/theseus.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 22.6 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220302T025935Z bookworm/main theseus 3.3.0-11 (dsc) [2065 B] Get:2 http://snapshot.notset.fr/archive/debian/20220302T025935Z bookworm/main theseus 3.3.0-11 (tar) [22.5 MB] Get:3 http://snapshot.notset.fr/archive/debian/20220302T025935Z bookworm/main theseus 3.3.0-11 (diff) [15.8 kB] Fetched 22.6 MB in 18s (1277 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'theseus_3.3.0-11.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting theseus in /build/theseus-jzXdL9/theseus-3.3.0 dpkg-source: info: unpacking theseus_3.3.0.orig.tar.gz dpkg-source: info: unpacking theseus_3.3.0-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 30_fix_gcc_options.patch dpkg-source: info: applying gcc-7.patch dpkg-source: info: applying 0003-fix-issues-uncovered-by-gcc8.patch dpkg-source: info: applying 0004-create-lib-dir.patch dpkg-source: info: applying 0005_stringbuffer.patch dpkg-source: info: applying adapt_to_muscle5.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/theseus-jzXdL9/theseus-3.3.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1643559509" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.BiLnzsyYUp dpkg-buildpackage: info: source package theseus dpkg-buildpackage: info: source version 3.3.0-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j10 clean make[1]: Entering directory '/build/theseus-jzXdL9/theseus-3.3.0' find . -name '*.[oa]' -exec rm -f {} \; rm -f theseus distfit make[1]: Leaving directory '/build/theseus-jzXdL9/theseus-3.3.0' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/theseus-jzXdL9/theseus-3.3.0' dh_auto_build --no-parallel make -j1 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/theseus-jzXdL9/theseus-3.3.0' mkdir -p lib ( cd libdistfit; make && cp libdistfit.a ../lib ) make[3]: Entering directory '/build/theseus-jzXdL9/theseus-3.3.0/libdistfit' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c statistics.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c beta_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c betaprime_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c betasym_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c binomial_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c cauchy_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c chi_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c chisqr_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c chisqrgen_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c EVD_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c exp_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c gamma_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c invchisqr_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c invgamma_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c invgauss_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c laplace_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c logistic_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c lognormal_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c maxwell_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c negbinom_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c normal_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pareto_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c rayleigh_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c recinvgauss_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c rice_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c uniform_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c vonmises_dist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c weibull_dist.c ar -rvs libdistfit.a statistics.o beta_dist.o betaprime_dist.o betasym_dist.o binomial_dist.o cauchy_dist.o chi_dist.o chisqr_dist.o chisqrgen_dist.o EVD_dist.o exp_dist.o gamma_dist.o invchisqr_dist.o invgamma_dist.o invgauss_dist.o laplace_dist.o logistic_dist.o lognormal_dist.o maxwell_dist.o negbinom_dist.o normal_dist.o pareto_dist.o rayleigh_dist.o recinvgauss_dist.o rice_dist.o uniform_dist.o vonmises_dist.o weibull_dist.o ar: creating libdistfit.a a - statistics.o a - beta_dist.o a - betaprime_dist.o a - betasym_dist.o a - binomial_dist.o a - cauchy_dist.o a - chi_dist.o a - chisqr_dist.o a - chisqrgen_dist.o a - EVD_dist.o a - exp_dist.o a - gamma_dist.o a - invchisqr_dist.o a - invgamma_dist.o a - invgauss_dist.o a - laplace_dist.o a - logistic_dist.o a - lognormal_dist.o a - maxwell_dist.o a - negbinom_dist.o a - normal_dist.o a - pareto_dist.o a - rayleigh_dist.o a - recinvgauss_dist.o a - rice_dist.o a - uniform_dist.o a - vonmises_dist.o a - weibull_dist.o ranlib libdistfit.a make[3]: Leaving directory '/build/theseus-jzXdL9/theseus-3.3.0/libdistfit' ( cd libDLTutils; make && cp libDLTutils.a ../lib ) make[3]: Entering directory '/build/theseus-jzXdL9/theseus-3.3.0/libDLTutils' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c DLTutils.c ar -rvs libDLTutils.a DLTutils.o ar: creating libDLTutils.a a - DLTutils.o ranlib libDLTutils.a make[3]: Leaving directory '/build/theseus-jzXdL9/theseus-3.3.0/libDLTutils' ( cd libmsa; make && cp libmsa.a ../lib ) make[3]: Entering directory '/build/theseus-jzXdL9/theseus-3.3.0/libmsa' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c msa.c ar -rvs libmsa.a msa.o ar: creating libmsa.a a - msa.o ranlib libmsa.a make[3]: Leaving directory '/build/theseus-jzXdL9/theseus-3.3.0/libmsa' ( cd libdltmath; make && cp libdltmath.a ../lib ) make[3]: Entering directory '/build/theseus-jzXdL9/theseus-3.3.0/libdltmath' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c ludcmp.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MatUtils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c Mat3Utils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c Mat4Utils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c VecUtils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c quicksort.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c integrate.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c eigen_gsl.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MultivarGamma.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c specfunc.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c RegGamma.c ar -rvs libdltmath.a ludcmp.o MatUtils.o Mat3Utils.o Mat4Utils.o VecUtils.o quicksort.o integrate.o eigen_gsl.o MultivarGamma.o specfunc.o RegGamma.o ar: creating libdltmath.a a - ludcmp.o a - MatUtils.o a - Mat3Utils.o a - Mat4Utils.o a - VecUtils.o a - quicksort.o a - integrate.o a - eigen_gsl.o a - MultivarGamma.o a - specfunc.o a - RegGamma.o ranlib libdltmath.a make[3]: Leaving directory '/build/theseus-jzXdL9/theseus-3.3.0/libdltmath' ( cd libdssplite; make && cp libdssplite.a ../lib ) make[3]: Entering directory '/build/theseus-jzXdL9/theseus-3.3.0/libdssplite' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c dssplite.c ar -rvs libdssplite.a dssplite.o ar: creating libdssplite.a a - dssplite.o ranlib libdssplite.a make[3]: Leaving directory '/build/theseus-jzXdL9/theseus-3.3.0/libdssplite' /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c CovMat.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c DistMat.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c Embed.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c Error.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c FragCds.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c FragDist.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c HierarchVars.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c lodmats.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MultiPose.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MultiPose2MSA.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c MultiPosePth.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c PCAstats.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbIO.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbMalloc.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbStats.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbUtils.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c QuarticHornFrag.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c RandCds.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c pdbSSM.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c ProcGSLSVD.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c ProcGSLSVDNu.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c ProcJacobiSVD.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c GibbsMet.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c qcprot.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c StructAlign.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c NWfill.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c termcol.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c theseuslib.c ar -rvs libtheseus.a CovMat.o DistMat.o Embed.o Error.o FragCds.o FragDist.o HierarchVars.o lodmats.o MultiPose.o MultiPose2MSA.o MultiPosePth.o PCAstats.o pdbIO.o pdbMalloc.o pdbStats.o pdbUtils.o QuarticHornFrag.o RandCds.o pdbSSM.o ProcGSLSVD.o ProcGSLSVDNu.o ProcJacobiSVD.o GibbsMet.o qcprot.o StructAlign.o NWfill.o termcol.o theseuslib.o ar: creating libtheseus.a a - CovMat.o a - DistMat.o a - Embed.o a - Error.o a - FragCds.o a - FragDist.o a - HierarchVars.o a - lodmats.o a - MultiPose.o a - MultiPose2MSA.o a - MultiPosePth.o a - PCAstats.o a - pdbIO.o a - pdbMalloc.o a - pdbStats.o a - pdbUtils.o a - QuarticHornFrag.o a - RandCds.o a - pdbSSM.o a - ProcGSLSVD.o a - ProcGSLSVDNu.o a - ProcJacobiSVD.o a - GibbsMet.o a - qcprot.o a - StructAlign.o a - NWfill.o a - termcol.o a - theseuslib.o mv libtheseus.a lib/libtheseus.a ranlib lib/libtheseus.a /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -c theseus.c /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops -fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result -Wformat-truncation=0 -pthread -Wl,-z,relro -Wl,-z,now -L./lib theseus.o CovMat.o DistMat.o Embed.o Error.o FragCds.o FragDist.o HierarchVars.o lodmats.o MultiPose.o MultiPose2MSA.o MultiPosePth.o PCAstats.o pdbIO.o pdbMalloc.o pdbStats.o pdbUtils.o QuarticHornFrag.o RandCds.o pdbSSM.o ProcGSLSVD.o ProcGSLSVDNu.o ProcJacobiSVD.o GibbsMet.o qcprot.o StructAlign.o NWfill.o termcol.o theseuslib.o -lgsl -ldistfit -lmsa -ldssplite -ldltmath -lDLTutils -ltheseus -lpthread -lgsl -lgslcblas -lm -lc -o theseus make[2]: Leaving directory '/build/theseus-jzXdL9/theseus-3.3.0' make[1]: Leaving directory '/build/theseus-jzXdL9/theseus-3.3.0' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/theseus-jzXdL9/theseus-3.3.0' make install INSTALLDIR=/build/theseus-jzXdL9/theseus-3.3.0/debian/theseus/usr/bin make[2]: Entering directory '/build/theseus-jzXdL9/theseus-3.3.0' chmod +x theseus theseus_align cp theseus theseus_align /build/theseus-jzXdL9/theseus-3.3.0/debian/theseus/usr/bin make[2]: Leaving directory '/build/theseus-jzXdL9/theseus-3.3.0' # Fix wrong path used in upstream script. Fixing it here is safer than # changing the patch for any new upstream release sed -e 's?/usr/local/bin?/usr/bin?' \ -e 's?/usr/bin/sed?/bin/sed?' \ theseus_align > debian/theseus/usr/bin/theseus_align make[1]: Leaving directory '/build/theseus-jzXdL9/theseus-3.3.0' debian/rules override_dh_install make[1]: Entering directory '/build/theseus-jzXdL9/theseus-3.3.0' dh_install # remove macos resource files find debian -name "._*" -delete find debian -name ".DS_*" -delete make[1]: Leaving directory '/build/theseus-jzXdL9/theseus-3.3.0' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'theseus' in '../theseus_3.3.0-11_amd64.deb'. dpkg-deb: building package 'theseus-dbgsym' in '../theseus-dbgsym_3.3.0-11_amd64.deb'. dpkg-genbuildinfo --build=any -O../theseus_3.3.0-11_amd64.buildinfo dpkg-genchanges --build=any -O../theseus_3.3.0-11_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/theseus-jzXdL9 /tmp/theseus-3.3.0-11dmlk0mz_ I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.BiLnzsyYUp... I: success in 342.6073 seconds md5: theseus-dbgsym_3.3.0-11_amd64.deb: OK md5: theseus_3.3.0-11_amd64.deb: OK sha1: theseus-dbgsym_3.3.0-11_amd64.deb: OK sha1: theseus_3.3.0-11_amd64.deb: OK sha256: theseus-dbgsym_3.3.0-11_amd64.deb: OK sha256: theseus_3.3.0-11_amd64.deb: OK Checksums: OK