Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/s/sra-sdk/sra-sdk_2.11.3+dfsg-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/sra-sdk-2.11.3+dfsg-1pv5_je44/sra-sdk_2.11.3+dfsg-1_amd64.buildinfo Get source package info: sra-sdk=2.11.3+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/sra-sdk/2.11.3+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3+b2 binutils=2.37-7 binutils-common=2.37-7 binutils-x86-64-linux-gnu=2.37-7 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:11.2.0-2 cpp-11=11.2.0-10 dash=0.5.11+git20210120+802ebd4-2 debconf=1.5.78 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-strip-nondeterminism=1.12.0-2 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-10 gcc=4:11.2.0-2 gcc-11=11.2.0-10 gcc-11-base=11.2.0-10 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hostname=3.23 icu-devtools=67.1-7 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-10 libatomic1=11.2.0-10 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1 libbinutils=2.37-7 libblkid1=2.37.2-4 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libbz2-dev=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-10 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-7 libctf0=2.37-7 libcurl4=7.74.0-1.3+b1 libcurl4-openssl-dev=7.74.0-1.3+b1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.2 libdpkg-perl=1.20.9 libelf1=0.185-2 libexpat1=2.4.1-3 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.0-2 libfuse-dev=2.9.9-5 libfuse2=2.9.9-5 libgcc-11-dev=11.2.0-10 libgcc-s1=11.2.0-10 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran5=11.2.0-10 libgmp10=2:6.2.1+dfsg-2 libgnutls30=3.7.2-2 libgomp1=11.2.0-10 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libicu-dev=67.1-7 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-10 libjpeg-dev=1:2.0.6-4 libjpeg62-turbo=1:2.0.6-4 libjpeg62-turbo-dev=1:2.0.6-4 libk5crypto3=1.18.3-7 libkdf5-2=2.11.2+dfsg-1 libkdf5-dev=2.11.2+dfsg-1 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-10 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-dev=1:5.39-3 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmbedcrypto3=2.16.9-0.1 libmbedtls-dev=2.16.9-0.1 libmbedtls12=2.16.9-0.1 libmbedx509-0=2.16.9-0.1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncbi-vdb-dev=2.11.2+dfsg-1 libncbi-vdb2=2.11.2+dfsg-1 libncbi-wvdb-dev=2.11.2+dfsg-1 libncbi-wvdb2=2.11.2+dfsg-1 libncursesw6=6.2+20210905-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libngs-sdk-dev=2.11.2-1 libngs-sdk2=2.11.2-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-5 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-16-0=10.36-2 libpcre2-32-0=10.36-2 libpcre2-8-0=10.36-2 libpcre2-dev=10.36-2 libpcre2-posix2=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.3-1 libpsl5=0.21.0-1.2 libpython3-stdlib=3.9.2-3 libpython3.9-minimal=3.9.7-4 libpython3.9-stdlib=3.9.7-4 libquadmath0=11.2.0-10 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.2-2 libselinux1=3.1-3 libselinux1-dev=3.1-3 libsepol1=3.1-1 libsepol1-dev=3.1-1 libsigsegv2=2.13-1 libsmartcols1=2.37.2-4 libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl-dev=1.1.1l-1 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-10 libstdc++6=11.2.0-10 libsub-override-perl=0.09-2 libsystemd0=249.5-1 libsz2=1.0.6-1 libtasn1-6=4.17.0-2 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-10 libubsan1=11.2.0-10 libuchardet0=0.0.7-1 libudev1=249.5-1 libunistring2=0.9.10-6 libuuid1=2.37.2-4 libvdb-sqlite-dev=2.11.2+dfsg-1 libvdb-sqlite2=2.11.2+dfsg-1 libxml2=2.9.12+dfsg-5 libxml2-dev=2.9.12+dfsg-5 libzstd-dev=1.4.8+dfsg-3 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.14.12-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 python3=3.9.2-3 python3-minimal=3.9.2-3 python3.9=3.9.7-4 python3.9-minimal=3.9.7-4 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 tzdata=2021d-1 util-linux=2.37.2-4 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211128T033921Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211128T033921Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211025T025314Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d sra-sdk=2.11.3+dfsg-1 && mkdir -p /build/sra-sdk-LzoAU7 && dpkg-source --no-check -x /*.dsc /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg && chown -R builduser:builduser /build/sra-sdk-LzoAU7" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1635200950" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/sra-sdk-LzoAU7 /tmp/sra-sdk-2.11.3+dfsg-1pv5_je44 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211025T025314Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.GqemSmb9Wd as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.GqemSmb9Wd Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211025T025314Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211025T025314Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (835 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4665 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211128T033921Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211128T033921Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211025T025314Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.GqemSmb9Wd Get:1 http://snapshot.notset.fr/archive/debian/20211128T033921Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211025T025314Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211128T033921Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211128T033921Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211128T033921Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211128T033921Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211128T033921Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211128T033921Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211128T033921Z bookworm/main Sources [11.7 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211128T033921Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.0 MB in 20s (1179 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.GqemSmb9Wd I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d sra-sdk=2.11.3+dfsg-1 && mkdir -p /build/sra-sdk-LzoAU7 && dpkg-source --no-check -x /*.dsc /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg && chown -R builduser:builduser /build/sra-sdk-LzoAU7"' exec /tmp/mmdebstrap.GqemSmb9Wd Reading package lists... NOTICE: 'sra-sdk' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sra-sdk.git Please use: git clone https://salsa.debian.org/med-team/sra-sdk.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 9624 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211128T033921Z bookworm/main sra-sdk 2.11.3+dfsg-1 (dsc) [2217 B] Get:2 http://snapshot.notset.fr/archive/debian/20211128T033921Z bookworm/main sra-sdk 2.11.3+dfsg-1 (tar) [5843 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211128T033921Z bookworm/main sra-sdk 2.11.3+dfsg-1 (diff) [3779 kB] Fetched 9624 kB in 8s (1276 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'sra-sdk_2.11.3+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting sra-sdk in /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg dpkg-source: info: unpacking sra-sdk_2.11.3+dfsg.orig.tar.xz dpkg-source: info: unpacking sra-sdk_2.11.3+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying find_configure_libs.patch dpkg-source: info: applying 10_portability.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying find_hdf5_serial.patch dpkg-source: info: applying find_ngs-sdk.patch dpkg-source: info: applying find_ncbi-vdb.patch dpkg-source: info: applying link_debian_packaged_libz.patch dpkg-source: info: applying link_debian_packaged_lmagic.patch dpkg-source: info: applying dont_use_static_lib.patch dpkg-source: info: applying set_explicit_path_to_schemata.patch dpkg-source: info: applying absolute_vschema_path_in_test.patch dpkg-source: info: applying ignore_failing_tests_for_the_moment.patch dpkg-source: info: applying do_not_link_statically.patch dpkg-source: info: applying link_debian_packaged_libmbed.patch dpkg-source: info: applying seek_dynamic_libs.patch dpkg-source: info: applying certs.kfg.patch dpkg-source: info: applying drop_tests.patch dpkg-source: info: applying ignore_failing_test_for_the_moment_FIXME.patch dpkg-source: info: applying python3 dpkg-source: info: applying use_exposed_headers.patch dpkg-source: info: applying skip_broken_loaders.patch dpkg-source: info: applying fix_libngs_linkage.patch dpkg-source: info: applying skip_test_using_lots_of_memory.patch dpkg-source: info: applying allow_multi_help.patch dpkg-source: info: applying run_unversioned_tools.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1635200950" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.GqemSmb9Wd dpkg-buildpackage: info: source package sra-sdk dpkg-buildpackage: info: source version 2.11.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Aaron M. Ucko dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' dh_auto_clean make -j1 distclean make[2]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/build/Makefile.shell:27: *** "*** File '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/build/Makefile.config' is missing. Please run /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/configure". Stop. make[2]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' dh_auto_clean: error: make -j1 distclean returned exit code 2 make[1]: [debian/rules:22: override_dh_auto_clean] Error 25 (ignored) make[1]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' dh_autoreconf_clean -O--no-parallel debian/rules override_dh_clean make[1]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' dh_clean rm -f reconfigure build/ld.linux.exe_cmd.sh build/Makefile.config build/Makefile.config.linux.x86_64 rm -rf test/*/actual test/*/tmp.kfg tools/kqsh/kqsh-sra.[ch] make[1]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' debian/rules binary-arch dh binary-arch --no-parallel debian/rules override_dh_update_autotools_config make[1]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' echo "do nothing" do nothing make[1]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' dh_autoreconf -a -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' # output dir will be checked so create it before mkdir -p debian/tmp/usr/lib ln -s /usr/lib/x86_64-linux-gnu debian/tmp/usr/lib # # # --with-debug sets some options that require header files like compiler.h which # is internal to ncbi-vcb and not installed into the package - so this option # should not be used. ./configure --build=x86_64-linux-gnu --prefix=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr --build-prefix=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr --with-ngs-sdk-prefix=/usr Configuring SRA-TOOLS package checking system type... Linux checking OS distributor... checking machine architecture... x86_64 checking for supported architecture... x86_64 (64 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... gcc tool chain is supported checking for gcc... gcc (Debian 11.2.0-10) 11.2.0 checking for g++... yes checking for Python 3... /usr/bin/python3 checking whether gcc accepts -Wno-array-bounds... yes checking whether g++ accepts -static-libstdc++... no checking for QMake... no checking for fuse library... running echo -e '#include \n int main() { fuse_get_context(); }\n' | gcc -xc -D_FILE_OFFSET_BITS=64 -I/usr/include - -lfuse yes HAVE_FUSE = 1 FUSE_INCDIR = /usr/include checking for hdf5 library... running echo -e '#include \n int main() { H5close (); }\n' | gcc -xc -I/usr/include - -lhdf5_serial -Wl,-Bdynamic -ldl -lm -lz yes HAVE_HDF5 = 1 HDF5_INCDIR = /usr/include checking for magic library... running echo -e '#include \n int main() { magic_open (0); }\n' | gcc -xc -I/usr/include - -lmagic yes HAVE_MAGIC = 1 MAGIC_INCDIR = /usr/include checking for xml2 library... running echo -e '#include \nint main() { xmlInitParser ( ); }\n' | gcc -xc -I/usr/include/libxml2 - -lxml2 yes HAVE_XML2 = 1 XML2_INCDIR = /usr/include/libxml2 checking for ngs-sdk package... includes... /usr libraries... checking /usr/lib/x86_64-linux-gnu/libngs-c++.a /usr/lib/x86_64-linux-gnu includes: /usr/include libraries: /usr/lib/x86_64-linux-gnu checking for ncbi-vdb package source files and build results... includes... /usr/include/ncbi-vdb src... includes... /usr libraries... checking /usr/lib/x86_64-linux-gnu/libncbi-vdb.so /usr/lib/x86_64-linux-gnu libraries... checking /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-vdb.so checking /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libkapp.a /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu includes: /usr/include/ncbi-vdb libraries: /usr/lib/x86_64-linux-gnu ilibraries: /usr/lib/x86_64-linux-gnu configure: creating 'build/ld.linux.exe_cmd.sh' configure: creating 'build/Makefile.config.linux.x86_64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools build output path: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel includedir: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/include bindir: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/bin libdir: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/lib CC = gcc -c CPP = g++ configured with: "'--build=x86_64-linux-gnu' '--prefix=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr' '--build-prefix=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr' '--with-ngs-sdk-prefix=/usr'" make[1]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/lib"; export OUTDIR=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp ; make DEB_CFLAGS="-g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb" DEB_CXXFLAGS="-g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb" DEB_LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' make[3]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/shared' '/usr/lib/ncbi-vdb/kfg/certs.kfg' -> '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/ncbi/certs.kfg' '/usr/lib/ncbi-vdb/kfg/default.kfg' -> '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/ncbi/default.kfg' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/shared' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/shared/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/shared/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/shared -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o toolkit.vers.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/shared/toolkit.vers.c -D__mod_name__=shared -D__file_name__=toolkit.vers -D__file_ext__=c ar -rc /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib/libtk-version.a toolkit.vers.pic.o make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/shared' make[3]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/shared' make[3]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/driver-tool' g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o sratools.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/sratools.cpp -D__mod_name__=tools/driver-tool -D__file_name__=sratools -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o sratools2.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/sratools2.cpp -D__mod_name__=tools/driver-tool -D__file_name__=sratools2 -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o imp_fasterq_dump.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/imp_fasterq_dump.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_fasterq_dump -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o imp_fastq_dump.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/imp_fastq_dump.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_fastq_dump -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o imp_prefetch.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/imp_prefetch.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_prefetch -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o imp_sam_dump.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/imp_sam_dump.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_sam_dump -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o imp_sra_pileup.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/imp_sra_pileup.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_sra_pileup -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o imp_srapath.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/imp_srapath.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_srapath -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o imp_vdb_dump.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/imp_vdb_dump.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_vdb_dump -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o cmdline.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/cmdline.cpp -D__mod_name__=tools/driver-tool -D__file_name__=cmdline -D__file_ext__=cpp /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/cmdline.cpp: In function ‘void ncbi::convertString(T&, const ncbi::String&) [with T = double]’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/cmdline.cpp:225:52: note: ‘#pragma message: TBD - check for NaN, INF, etc.’ 225 | #pragma message ( "TBD - check for NaN, INF, etc." ) | ^ In file included from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/cmdline.cpp:37: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/cmdline.cpp: In member function ‘virtual void ncbi::DebugOption::handleOption(ncbi::Cmdline&) const’: /usr/include/ncbi-vdb/klib/debug.h:547:27: warning: statement has no effect [-Wunused-value] 547 | #define KDbgSetString(s) ((rc_t)0) | ~^~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/cmdline.cpp:461:17: note: in expansion of macro ‘KDbgSetString’ 461 | KDbgSetString ( s ); | ^~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/cmdline.cpp:460:30: warning: unused variable ‘s’ [-Wunused-variable] 460 | const UTF8 * s ( text . data () ); | ^ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/cmdline.cpp: At global scope: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/cmdline.cpp:1838:10: warning: ‘void ncbi::add_default_param(ncbi::EnvImport&, ncbi::EnvImport::Import*)’ defined but not used [-Wunused-function] 1838 | void add_default_param ( EnvImport & env, EnvImport :: Import * import ) | ^~~~~~~~~~~~~~~~~ g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o config.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/config.cpp -D__mod_name__=tools/driver-tool -D__file_name__=config -D__file_ext__=cpp /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/config.cpp:103:13: warning: ‘bool sratools::forceInstallID()’ defined but not used [-Wunused-function] 103 | static bool forceInstallID(void) | ^~~~~~~~~~~~~~ g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o proc.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/proc.cpp -D__mod_name__=tools/driver-tool -D__file_name__=proc -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o run-source.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/run-source.cpp -D__mod_name__=tools/driver-tool -D__file_name__=run-source -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o uuid.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/uuid.cpp -D__mod_name__=tools/driver-tool -D__file_name__=uuid -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o service.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/service.cpp -D__mod_name__=tools/driver-tool -D__file_name__=service -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o support2.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/support2.cpp -D__mod_name__=tools/driver-tool -D__file_name__=support2 -D__file_ext__=cpp make -C /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json make[6]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json' make[7]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/driver-tool/json' g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o json.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/json.cpp -D__mod_name__=tools/driver-tool/json -D__file_name__=json -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o json-array.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/json-array.cpp -D__mod_name__=tools/driver-tool/json -D__file_name__=json-array -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o json-object.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/json-object.cpp -D__mod_name__=tools/driver-tool/json -D__file_name__=json-object -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o json-primitive.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/json-primitive.cpp -D__mod_name__=tools/driver-tool/json -D__file_name__=json-primitive -D__file_ext__=cpp /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/json-primitive.cpp: In function ‘ncbi::String ncbi::string_to_json(const ncbi::String&)’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/json-primitive.cpp:79:32: warning: unused variable ‘len’ [-Wunused-variable] 79 | size_t len = snprintf( buff, sizeof buff, "\\u%04x", | ^~~ g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o json-value.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/json-value.cpp -D__mod_name__=tools/driver-tool/json -D__file_name__=json-value -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/inc -MD -o json-wrapper.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/json-wrapper.cpp -D__mod_name__=tools/driver-tool/json -D__file_name__=json-wrapper -D__file_ext__=cpp make[8]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/utf8proc' cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -fPIC -std=c99 -Wall -pedantic -DUTF8PROC_EXPORTS -c -o utf8proc.o utf8proc.c rm -f libutf8proc.a ar rs libutf8proc.a utf8proc.o ar: creating libutf8proc.a cc -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 -shared -o libutf8proc.so.2.2.0 -Wl,-soname -Wl,libutf8proc.so.2 utf8proc.o chmod a-x libutf8proc.so.2.2.0 ln -f -s libutf8proc.so.2.2.0 libutf8proc.so ln -f -s libutf8proc.so.2.2.0 libutf8proc.so.2 make[8]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/utf8proc' make[8]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure' make[9]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/driver-tool/secure' g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/../inc -MD -o busy.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/busy.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=busy -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/../inc -MD -o payload.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/payload.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=payload -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/../inc -MD -o base64.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/base64.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=base64 -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/../inc -MD -o except.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/except.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=except -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/../inc -MD -o string.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/string.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=string -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/../inc -MD -o atoi.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/atoi.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=atoi -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -std=c++11 -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/../inc -MD -o memset_s.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure/memset_s.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=memset_s -D__file_ext__=cpp ar -rc /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib/libsecure.a busy.pic.o payload.pic.o base64.pic.o except.pic.o string.pic.o atoi.pic.o memset_s.pic.o make[9]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/driver-tool/secure' make[8]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/secure' ar -rc /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib/libjson.a json.pic.o json-array.pic.o json-object.pic.o json-primitive.pic.o json-value.pic.o json-wrapper.pic.o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/utf8proc/utf8proc.o ld-tmp/secure-busy.pic.o ld-tmp/secure-payload.pic.o ld-tmp/secure-base64.pic.o ld-tmp/secure-except.pic.o ld-tmp/secure-string.pic.o ld-tmp/secure-atoi.pic.o ld-tmp/secure-memset_s.pic.o make[7]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/driver-tool/json' make[6]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool/json' +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ g++ -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sratools.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 sratools.o sratools2.o imp_fasterq_dump.o imp_fastq_dump.o imp_prefetch.o imp_sam_dump.o imp_sra_pileup.o imp_srapath.o imp_vdb_dump.o cmdline.o config.o proc.o run-source.o uuid.o service.o support2.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lncbi-vdb -ljson -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sratools.2.11.3 sratools.2 ln -s sratools.2 sratools make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/driver-tool' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/driver-tool' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/util' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o rcexplain.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/rcexplain.c -D__mod_name__=tools/util -D__file_name__=rcexplain -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/rcexplain.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 rcexplain.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s rcexplain.2.11.3 rcexplain.2 ln -s rcexplain.2 rcexplain gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kdbmeta.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/kdbmeta.c -D__mod_name__=tools/util -D__file_name__=kdbmeta -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kdbmeta.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kdbmeta.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s kdbmeta.2.11.3 kdbmeta.2 ln -s kdbmeta.2 kdbmeta gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o md5cp.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/md5cp.c -D__mod_name__=tools/util -D__file_name__=md5cp -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/md5cp.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 md5cp.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s md5cp.2.11.3 md5cp.2 ln -s md5cp.2 md5cp gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-lock.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/vdb-lock.c -D__mod_name__=tools/util -D__file_name__=vdb-lock -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-lock.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-lock.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-lock.2.11.3 vdb-lock.2 ln -s vdb-lock.2 vdb-lock gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-unlock.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/vdb-unlock.c -D__mod_name__=tools/util -D__file_name__=vdb-unlock -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-unlock.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-unlock.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-unlock.2.11.3 vdb-unlock.2 ln -s vdb-unlock.2 vdb-unlock gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o PrintOS.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/unix/PrintOS.c -D__mod_name__=tools/util -D__file_name__=PrintOS -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o test-sra.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/test-sra.c -D__mod_name__=tools/util -D__file_name__=test-sra -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/test-sra.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 PrintOS.o test-sra.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s test-sra.2.11.3 test-sra.2 ln -s test-sra.2 test-sra gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-passwd.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/vdb-passwd.c -D__mod_name__=tools/util -D__file_name__=vdb-passwd -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o syspass.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/unix/syspass.c -D__mod_name__=tools/util -D__file_name__=syspass -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-passwd.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-passwd.o syspass.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-passwd.2.11.3 vdb-passwd.2 ln -s vdb-passwd.2 vdb-passwd gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o make-read-filter.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/make-read-filter.c -D__mod_name__=tools/util -D__file_name__=make-read-filter -D__file_ext__=c In file included from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/make-read-filter.c:33: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/make-read-filter.h: In function ‘rowCount’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/make-read-filter.h:124:16: warning: unused variable ‘rc’ [-Wunused-variable] 124 | rc_t const rc = VCursorIdRange(curs, cid, first, &count); | ^~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/make-read-filter.c: In function ‘main_1’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/make-read-filter.c:598:9: warning: ignoring return value of ‘chdir’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 598 | chdir(wd); | ^~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/make-read-filter.c: In function ‘temporaryDirectory’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/make-read-filter.c:938:5: warning: ignoring return value of ‘mkdtemp’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 938 | mkdtemp(pattern); | ^~~~~~~~~~~~~~~~ At top level: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util/make-read-filter.c:692:13: warning: ‘test’ defined but not used [-Wunused-function] 692 | static void test(void) | ^~~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/make-read-filter.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 make-read-filter.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s make-read-filter.2.11.3 make-read-filter.2 ln -s make-read-filter.2 make-read-filter make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/util' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/util' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-cache' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/align-cache' g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-cache/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-cache/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-cache -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o align-cache.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-cache/align-cache.cpp -D__mod_name__=tools/align-cache -D__file_name__=align-cache -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-cache/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-cache/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-cache -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o helper.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-cache/helper.cpp -D__mod_name__=tools/align-cache -D__file_name__=helper -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ g++ -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/align-cache.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 align-cache.o helper.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -lload -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s align-cache.2.11.3 align-cache.2 ln -s align-cache.2 align-cache make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/align-cache' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-cache' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/kar' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kar-path.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar-path.c -D__mod_name__=tools/kar -D__file_name__=kar-path -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kar-args.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar-args.c -D__mod_name__=tools/kar -D__file_name__=kar-args -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kar.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar.c -D__mod_name__=tools/kar -D__file_name__=kar -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar.c: In function ‘kar_persist’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar.c:1032:15: warning: ‘total_written’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1032 | *num_writ = total_written; | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar.c:988:28: note: ‘total_written’ was declared here 988 | size_t total_expected, total_written; | ^~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar.c:964:15: warning: ‘total_written’ may be used uninitialized in this function [-Wmaybe-uninitialized] 964 | *num_writ = total_written; | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar.c:919:28: note: ‘total_written’ was declared here 919 | size_t total_expected, total_written; | ^~~~~~~~~~~~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kar.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kar-path.o kar-args.o kar.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s kar.2.11.3 kar.2 ln -s kar.2 kar gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kar+util.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar+util.c -D__mod_name__=tools/kar -D__file_name__=kar+util -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kar+meta.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar+meta.c -D__mod_name__=tools/kar -D__file_name__=kar+meta -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kar+meta.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kar+util.o kar+meta.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s kar+meta.2.11.3 kar+meta.2 ln -s kar+meta.2 kar+meta gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kar+args.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar+args.c -D__mod_name__=tools/kar -D__file_name__=kar+args -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kar+print.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar+print.c -D__mod_name__=tools/kar -D__file_name__=kar+print -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kar+.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar+.c -D__mod_name__=tools/kar -D__file_name__=kar+ -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar+.c: In function ‘kar_persist’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar+.c:720:15: warning: ‘total_written’ may be used uninitialized in this function [-Wmaybe-uninitialized] 720 | *num_writ = total_written; | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar+.c:676:28: note: ‘total_written’ was declared here 676 | size_t total_expected, total_written; | ^~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar+.c:652:15: warning: ‘total_written’ may be used uninitialized in this function [-Wmaybe-uninitialized] 652 | *num_writ = total_written; | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar/kar+.c:607:28: note: ‘total_written’ was declared here 607 | size_t total_expected, total_written; | ^~~~~~~~~~~~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/kar+.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kar-path.o kar+args.o kar+print.o kar+util.o kar+.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s kar+.2.11.3 kar+.2 ln -s kar+.2 kar+ make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/kar' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kar' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kqsh' perl kqsh-thunk.pl -mkdb -I/usr/include/ncbi-vdb/ -ikdb/manager.h -ikdb/database.h -ikdb/table.h -ikdb/column.h -ikdb/index.h -ikdb/meta.h -ikdb/namelist.h \ :KDBManager=mgr :KDatabase=db :KTable=tbl :KColumn=col :KColumnBlob=blob :KIndex=idx :KMetadata=meta :KMDataNode=node -h kqsh-kdb.h -c kqsh-kdb.c || rm kqsh-kdb.c perl kqsh-thunk.pl -mvdb -I/usr/include/ncbi-vdb/ -ivdb/manager.h -ivdb/database.h -ivdb/schema.h -ivdb/table.h -ivdb/cursor.h \ :VDBManager=mgr VSchemaRuntimeTable=srtt VSchema=schema VTypedecl=td VTypedesc=tdesc :VDatabase=db :VTable=tbl :VCursor=curs -h kqsh-vdb.h -c kqsh-vdb.c || rm kqsh-vdb.c perl kqsh-thunk.pl -msra -I/usr/include/ncbi-vdb/ -isra/sradb.h -isra/wsradb.h -isra/sraschema.h \ :SRAMgr=mgr SRANamelist=nmlist :SRATable=tbl SRAColumn=col VDBManager=vmgr -h kqsh-sra.h -c kqsh-sra.c || rm kqsh-sra.c make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/kqsh' make[5]: Nothing to be done for '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/std-cmn'. make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/kqsh' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kqsh' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-dump' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-dump-context.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-context.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-context -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-dump-coldefs.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-coldefs.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-coldefs -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-dump-tools.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-tools -D__file_ext__=c In file included from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:41: In function ‘bitcpy’, inlined from ‘bitcpy’ at /usr/include/ncbi-vdb/cc/gcc/x86_64/../noarch/bitstr.h:59:6, inlined from ‘vdt_move_to_value’ at /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:169:9, inlined from ‘vdt_dump_float_element’ at /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:458:13, inlined from ‘vdt_dump_float_element’ at /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:445:13: /usr/include/ncbi-vdb/cc/gcc/x86_64/bitstr.h:35:20: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized] 35 | #define BSWAP( x ) bswap_32 ( x ) | ^~~~~~~~~~~~~~ /usr/include/ncbi-vdb/cc/gcc/x86_64/../noarch/bitstr.h:107:15: note: in expansion of macro ‘BSWAP’ 107 | reg = BSWAP ( dst [ 0 ] ) & ~ lmask; | ^~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c: In function ‘vdt_dump_float_element’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:457:19: note: ‘value’ declared here 457 | float value; | ^~~~~ In file included from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:41: In function ‘bitcpy’, inlined from ‘bitcpy’ at /usr/include/ncbi-vdb/cc/gcc/x86_64/../noarch/bitstr.h:59:6, inlined from ‘vdt_move_to_value’ at /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:169:9, inlined from ‘vdt_dump_float_element’ at /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:465:13, inlined from ‘vdt_dump_float_element’ at /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:445:13: /usr/include/ncbi-vdb/cc/gcc/x86_64/bitstr.h:35:20: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized] 35 | #define BSWAP( x ) bswap_32 ( x ) | ^~~~~~~~~~~~~~ /usr/include/ncbi-vdb/cc/gcc/x86_64/../noarch/bitstr.h:107:15: note: in expansion of macro ‘BSWAP’ 107 | reg = BSWAP ( dst [ 0 ] ) & ~ lmask; | ^~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c: In function ‘vdt_dump_float_element’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:464:20: note: ‘value’ declared here 464 | double value; | ^~~~~ In file included from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:41: In function ‘bitcpy’, inlined from ‘bitcpy’ at /usr/include/ncbi-vdb/cc/gcc/x86_64/../noarch/bitstr.h:59:6, inlined from ‘vdt_move_to_value’ at /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:169:9, inlined from ‘vdt_dump_float_element’ at /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:465:13, inlined from ‘vdt_dump_float_element’ at /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:445:13: /usr/include/ncbi-vdb/cc/gcc/x86_64/bitstr.h:35:20: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized] 35 | #define BSWAP( x ) bswap_32 ( x ) | ^~~~~~~~~~~~~~ /usr/include/ncbi-vdb/cc/gcc/x86_64/../noarch/bitstr.h:198:16: note: in expansion of macro ‘BSWAP’ 198 | reg |= BSWAP ( dst [ dcountz ] ) & rmask; | ^~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c: In function ‘vdt_dump_float_element’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-tools.c:464:20: note: ‘value’ declared here 464 | double value; | ^~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-dump-str.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-str.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-str -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-dump-helper.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-helper.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-helper -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-dump-formats.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-formats.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-formats -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-dump-redir.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-redir.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-redir -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-dump-fastq.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump-fastq.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-fastq -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb_info.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb_info.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb_info -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-dump.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump/vdb-dump.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-dump.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-dump-context.o vdb-dump-coldefs.o vdb-dump-tools.o vdb-dump-str.o vdb-dump-helper.o vdb-dump-formats.o vdb-dump-redir.o vdb-dump-fastq.o vdb_info.o vdb-dump.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-dump.2.11.3 vdb-dump.2 ln -s vdb-dump.2 vdb-dump make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-dump' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-dump' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-dump' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o factory.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/factory.c -D__mod_name__=tools/sra-dump -D__file_name__=factory -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fasta_dump.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/fasta_dump.c -D__mod_name__=tools/sra-dump -D__file_name__=fasta_dump -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o core.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/core.c -D__mod_name__=tools/sra-dump -D__file_name__=core -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fastq.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/fastq.c -D__mod_name__=tools/sra-dump -D__file_name__=fastq -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/fastq-dump.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 factory.o fasta_dump.o core.o fastq.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s fastq-dump.2.11.3 fastq-dump.2 ln -s fastq-dump.2 fastq-dump gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sff.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/sff.c -D__mod_name__=tools/sra-dump -D__file_name__=sff -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sff-dump.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 factory.o fasta_dump.o core.o sff.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sff-dump.2.11.3 sff-dump.2 ln -s sff-dump.2 sff-dump gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o illumina.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/illumina.c -D__mod_name__=tools/sra-dump -D__file_name__=illumina -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/illumina-dump.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 factory.o fasta_dump.o core.o illumina.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s illumina-dump.2.11.3 illumina-dump.2 ln -s illumina-dump.2 illumina-dump gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o abi.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump/abi.c -D__mod_name__=tools/sra-dump -D__file_name__=abi -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/abi-dump.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 factory.o fasta_dump.o core.o abi.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s abi-dump.2.11.3 abi-dump.2 ln -s abi-dump.2 abi-dump make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-dump' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-dump' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-pileup' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o dyn_string.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/dyn_string.c -D__mod_name__=tools/sra-pileup -D__file_name__=dyn_string -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cmdline_cmn.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/cmdline_cmn.c -D__mod_name__=tools/sra-pileup -D__file_name__=cmdline_cmn -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/cmdline_cmn.c: In function ‘foreach_argument’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/cmdline_cmn.c:514:20: warning: ‘rc’ may be used uninitialized in this function [-Wmaybe-uninitialized] 514 | if ( rc == 0 && path != NULL ) | ^ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o out_redir.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/out_redir.c -D__mod_name__=tools/sra-pileup -D__file_name__=out_redir -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o perf_log.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/perf_log.c -D__mod_name__=tools/sra-pileup -D__file_name__=perf_log -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o reref.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/reref.c -D__mod_name__=tools/sra-pileup -D__file_name__=reref -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/reref.c: In function ‘report_on_reference’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/reref.c:206:14: warning: ‘max_ev_at’ may be used uninitialized in this function [-Wmaybe-uninitialized] 206 | rc = KOutMsg( "max. EV:\t%,u\tat row #%,i ( from pos: %,u ... %,u )\n", max_ev, max_ev_at, from, from + 4999 ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/reref.c:160:46: note: ‘max_ev_at’ was declared here 160 | int64_t row_id, max_prim_at, max_sec_at, max_ev_at; | ^~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/reref.c:201:14: warning: ‘max_sec_at’ may be used uninitialized in this function [-Wmaybe-uninitialized] 201 | rc = KOutMsg( "max. SEC:\t%,u\tat row #%,i ( from pos: %,u ... %,u )\n", max_sec, max_sec_at, from, from + 4999 ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/reref.c:160:34: note: ‘max_sec_at’ was declared here 160 | int64_t row_id, max_prim_at, max_sec_at, max_ev_at; | ^~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/reref.c:195:41: warning: ‘max_prim_at’ may be used uninitialized in this function [-Wmaybe-uninitialized] 195 | uint64_t from = ( ( max_prim_at - start ) * 5000 ) + 1; | ~~~~~~~~~~~~~~^~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/reref.c:160:21: note: ‘max_prim_at’ was declared here 160 | int64_t row_id, max_prim_at, max_sec_at, max_ev_at; | ^~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cg_tools.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/cg_tools.c -D__mod_name__=tools/sra-pileup -D__file_name__=cg_tools -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/cg_tools.c: In function ‘fmt_cigar_elem’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/cg_tools.c:570:10: warning: unused variable ‘rc’ [-Wunused-variable] 570 | rc_t rc = string_printf ( dst, 11, &num_writ, "%d%c", cig_oplen, cig_op ); | ^~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/cg_tools.c: In function ‘cg_canonical_print_cigar’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/cg_tools.c:1721:12: warning: ‘rc’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1721 | return rc; | ^~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/cg_tools.c:1717:29: warning: ‘total_cnt’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1717 | if(total_cnt && op) KOutMsg( "%d%c", total_cnt,op ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o report_deletes.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/report_deletes.c -D__mod_name__=tools/sra-pileup -D__file_name__=report_deletes -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o ref_regions.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/ref_regions.c -D__mod_name__=tools/sra-pileup -D__file_name__=ref_regions -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o 4na_ascii.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/4na_ascii.c -D__mod_name__=tools/sra-pileup -D__file_name__=4na_ascii -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o ref_walker_0.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/ref_walker_0.c -D__mod_name__=tools/sra-pileup -D__file_name__=ref_walker_0 -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o ref_walker.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/ref_walker.c -D__mod_name__=tools/sra-pileup -D__file_name__=ref_walker -D__file_ext__=c In function ‘make_cursor_ids’, inlined from ‘ref_walker_add_iterator.constprop’ at /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/ref_walker.c:673:15: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/ref_walker.c:605:14: warning: ‘ids’ may be used uninitialized [-Wmaybe-uninitialized] 605 | rc = VectorAppend ( cursor_id_vector, NULL, ids ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/ref_walker.c:32: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/ref_walker.c: In function ‘ref_walker_add_iterator.constprop’: /usr/include/ncbi-vdb/klib/vector.h:401:21: note: by argument 3 of type ‘const void *’ to ‘VectorAppend’ declared here 401 | KLIB_EXTERN rc_t CC VectorAppend ( Vector *self, uint32_t *idx, const void *item ); | ^~~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o walk_debug.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/walk_debug.c -D__mod_name__=tools/sra-pileup -D__file_name__=walk_debug -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pileup_counters.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/pileup_counters.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_counters -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pileup_index.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/pileup_index.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_index -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pileup_indels.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/pileup_indels.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_indels -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pileup_varcount.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/pileup_varcount.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_varcount -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pileup_stat.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/pileup_stat.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_stat -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pileup_v2.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/pileup_v2.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_v2 -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sra-pileup.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sra-pileup.c -D__mod_name__=tools/sra-pileup -D__file_name__=sra-pileup -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sra-pileup.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 dyn_string.o cmdline_cmn.o out_redir.o perf_log.o reref.o cg_tools.o report_deletes.o ref_regions.o 4na_ascii.o ref_walker_0.o ref_walker.o walk_debug.o pileup_counters.o pileup_index.o pileup_indels.o pileup_varcount.o pileup_stat.o pileup_v2.o sra-pileup.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sra-pileup.2.11.3 sra-pileup.2 ln -s sra-pileup.2 sra-pileup gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o inputfiles.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/inputfiles.c -D__mod_name__=tools/sra-pileup -D__file_name__=inputfiles -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o rna_splice_log.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/rna_splice_log.c -D__mod_name__=tools/sra-pileup -D__file_name__=rna_splice_log -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sam-dump-opts.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-dump-opts.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-dump-opts -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sam-hdr.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-hdr.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-hdr -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sam-hdr1.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-hdr1.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-hdr1 -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o matecache.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/matecache.c -D__mod_name__=tools/sra-pileup -D__file_name__=matecache -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o read_fkt.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/read_fkt.c -D__mod_name__=tools/sra-pileup -D__file_name__=read_fkt -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sam-aligned.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-aligned.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-aligned -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sam-unaligned.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-unaligned.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-unaligned -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o md_flag.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/md_flag.c -D__mod_name__=tools/sra-pileup -D__file_name__=md_flag -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sam-dump.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-dump.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-dump -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-dump.c: In function ‘DumpCGSAM.part.0’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-dump.c:2752:40: warning: ‘last_cig_op’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2752 | ciglen = last_ciglen + sprintf(dst+last_ciglen,"%d%c",last_cig_oplen,last_cig_op); \ | ^~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-dump.c:2740:14: note: ‘last_cig_op’ was declared here 2740 | char last_cig_op; | ^~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sam-dump3.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-dump3.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-dump3 -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-dump3.c: In function ‘KMain’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-dump3.c:481:10: warning: ‘mode’ may be used uninitialized in this function [-Wmaybe-uninitialized] 481 | rc = init_out_redir( &redir, mode, opts->outputfile, opts->output_buffer_size ); /* from out_redir.c */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup/sam-dump3.c:472:25: note: ‘mode’ was declared here 472 | enum out_redir_mode mode; | ^~~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sam-dump.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 inputfiles.o perf_log.o rna_splice_log.o sam-dump-opts.o out_redir.o sam-hdr.o sam-hdr1.o matecache.o read_fkt.o sam-aligned.o sam-unaligned.o md_flag.o cg_tools.o sam-dump.o sam-dump3.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sam-dump.2.11.3 sam-dump.2 ln -s sam-dump.2 sam-dump make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-pileup' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-pileup' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/bam-loader' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o bam-loader.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam-loader.c -D__mod_name__=tools/bam-loader -D__file_name__=bam-loader -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o bam.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c -D__mod_name__=tools/bam-loader -D__file_name__=bam -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c: In function ‘ProcessHeaderText’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c:800:14: warning: ‘value’ may be used uninitialized in this function [-Wmaybe-uninitialized] 800 | unsigned value; | ^~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c:843:21: warning: ‘tag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 843 | if (strcmp(&hdata[tag], "ID") == 0) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c:799:14: note: ‘tag’ was declared here 799 | unsigned tag; | ^~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c:690:14: warning: ‘value’ may be used uninitialized in this function [-Wmaybe-uninitialized] 690 | unsigned value; | ^~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c:739:21: warning: ‘tag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 739 | if (strcmp(&hdata[tag], "SN") == 0) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c:689:14: note: ‘tag’ was declared here 689 | unsigned tag; | ^~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c:669:29: warning: ‘value’ may be used uninitialized in this function [-Wmaybe-uninitialized] 669 | *rslt = &hdata[value]; | ^~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c:636:14: note: ‘value’ was declared here 636 | unsigned value; | ^~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c:668:21: warning: ‘tag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 668 | if (strcmp(&hdata[tag], "VN") == 0) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c:635:14: note: ‘tag’ was declared here 635 | unsigned tag; | ^~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c: In function ‘BAM_FileMake’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c:1321:18: warning: ‘refSeq’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1321 | self->refSeq = refSeq; | ~~~~~~~~~~~~~^~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/bam.c:1282:16: note: ‘refSeq’ was declared here 1282 | BAMRefSeq *refSeq; | ^~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sam.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/sam.c -D__mod_name__=tools/bam-loader -D__file_name__=sam -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o alignment-writer.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/alignment-writer.c -D__mod_name__=tools/bam-loader -D__file_name__=alignment-writer -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o reference-writer.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/reference-writer.c -D__mod_name__=tools/bam-loader -D__file_name__=reference-writer -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sequence-writer.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/sequence-writer.c -D__mod_name__=tools/bam-loader -D__file_name__=sequence-writer -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/sequence-writer.c: In function ‘SequenceWhack’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/sequence-writer.c:490:14: warning: unused variable ‘rc’ [-Wunused-variable] 490 | rc_t rc = VDatabaseOpenTableUpdate(self->db, &tbl, "SEQUENCE"); | ^~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o loader-imp.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/loader-imp.c -D__mod_name__=tools/bam-loader -D__file_name__=loader-imp -D__file_ext__=c g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o mem-bank.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/mem-bank.cpp -D__mod_name__=tools/bam-loader -D__file_name__=mem-bank -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o low-match-count.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader/low-match-count.cpp -D__mod_name__=tools/bam-loader -D__file_name__=low-match-count -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ g++ -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/bam-load.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 bam-loader.o bam.o sam.o alignment-writer.o reference-writer.o sequence-writer.o loader-imp.o mem-bank.o low-match-count.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s bam-load.2.11.3 bam-load.2 ln -s bam-load.2 bam-load make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/bam-loader' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/bam-loader' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/fastq-loader' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o spot-assembler.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/spot-assembler.c -D__mod_name__=tools/fastq-loader -D__file_name__=spot-assembler -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o common-writer.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/common-writer.c -D__mod_name__=tools/fastq-loader -D__file_name__=common-writer -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sequence-writer.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/sequence-writer.c -D__mod_name__=tools/fastq-loader -D__file_name__=sequence-writer -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o common-reader.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/common-reader.c -D__mod_name__=tools/fastq-loader -D__file_name__=common-reader -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fastq-reader.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-reader.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-reader -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fastq-grammar.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-grammar.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-grammar -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fastq-lex.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-lex -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c: In function ‘yylex’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c:1142:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1142 | if ( ! yyg->yy_state_buf ) | ^~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c:1144:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1144 | if ( ! yyg->yy_state_buf ) | ^~ At top level: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c:2449:13: warning: ‘yy_fatal_error’ defined but not used [-Wunused-function] 2449 | static void yy_fatal_error (yyconst char* msg , yyscan_t yyscanner) | ^~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c:2435:16: warning: ‘yy_top_state’ defined but not used [-Wunused-function] 2435 | static int yy_top_state (yyscan_t yyscanner) | ^~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c:1878:16: warning: ‘input’ defined but not used [-Wunused-function] 1878 | static int input (yyscan_t yyscanner) | ^~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o id2name.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/id2name.c -D__mod_name__=tools/fastq-loader -D__file_name__=id2name -D__file_ext__=c ar -rc /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib/libfastqloader.a spot-assembler.pic.o common-writer.pic.o sequence-writer.pic.o common-reader.pic.o fastq-reader.pic.o fastq-grammar.pic.o fastq-lex.pic.o id2name.pic.o gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fastq-loader.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-loader.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-loader -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o loader-imp.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/loader-imp.c -D__mod_name__=tools/fastq-loader -D__file_name__=loader-imp -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o common-writer.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/common-writer.c -D__mod_name__=tools/fastq-loader -D__file_name__=common-writer -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sequence-writer.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/sequence-writer.c -D__mod_name__=tools/fastq-loader -D__file_name__=sequence-writer -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o common-reader.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/common-reader.c -D__mod_name__=tools/fastq-loader -D__file_name__=common-reader -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o spot-assembler.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/spot-assembler.c -D__mod_name__=tools/fastq-loader -D__file_name__=spot-assembler -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fastq-reader.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-reader.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-reader -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fastq-grammar.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-grammar.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-grammar -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fastq-lex.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-lex -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c: In function ‘yylex’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c:1142:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1142 | if ( ! yyg->yy_state_buf ) | ^~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c:1144:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1144 | if ( ! yyg->yy_state_buf ) | ^~ At top level: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c:2449:13: warning: ‘yy_fatal_error’ defined but not used [-Wunused-function] 2449 | static void yy_fatal_error (yyconst char* msg , yyscan_t yyscanner) | ^~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c:2435:16: warning: ‘yy_top_state’ defined but not used [-Wunused-function] 2435 | static int yy_top_state (yyscan_t yyscanner) | ^~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/fastq-lex.c:1878:16: warning: ‘input’ defined but not used [-Wunused-function] 1878 | static int input (yyscan_t yyscanner) | ^~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o id2name.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader/id2name.c -D__mod_name__=tools/fastq-loader -D__file_name__=id2name -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/latf-load.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 fastq-loader.o loader-imp.o common-writer.o sequence-writer.o common-reader.o spot-assembler.o fastq-reader.o fastq-grammar.o fastq-lex.o id2name.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s latf-load.2.11.3 latf-load.2 ln -s latf-load.2 latf-load make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/fastq-loader' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fastq-loader' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/srapath' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o helper.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/helper.c -D__mod_name__=tools/srapath -D__file_name__=helper -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o line_iter.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/line_iter.c -D__mod_name__=tools/srapath -D__file_name__=line_iter -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o repository-mgr.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/repository-mgr.c -D__mod_name__=tools/srapath -D__file_name__=repository-mgr -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o services.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/services.c -D__mod_name__=tools/srapath -D__file_name__=services -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/services.c: In function ‘json_print_named_url’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/services.c:338:10: warning: unused variable ‘rc’ [-Wunused-variable] 338 | rc_t rc = VPathMakeString(url, &tmp); assert(rc == 0); | ^~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/services.c: In function ‘json_print_named_urls_and_service’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/services.c:356:14: warning: unused variable ‘rc’ [-Wunused-variable] 356 | rc_t rc = VPathMakeString(url, &tmp); assert(rc == 0); | ^~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cgi_request.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/cgi_request.c -D__mod_name__=tools/srapath -D__file_name__=cgi_request -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o srapath.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath/srapath.c -D__mod_name__=tools/srapath -D__file_name__=srapath -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/srapath.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 helper.o line_iter.o repository-mgr.o services.o cgi_request.o srapath.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s srapath.2.11.3 srapath.2 ln -s srapath.2 srapath make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/srapath' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/srapath' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-stat' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o assembly-statistics.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat/assembly-statistics.c -D__mod_name__=tools/sra-stat -D__file_name__=assembly-statistics -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sra.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat/sra.c -D__mod_name__=tools/sra-stat -D__file_name__=sra -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sra-stat.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat/sra-stat.c -D__mod_name__=tools/sra-stat -D__file_name__=sra-stat -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sra-stat.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 assembly-statistics.o sra.o sra-stat.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -lload -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sra-stat.2.11.3 sra-stat.2 ln -s sra-stat.2 sra-stat make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-stat' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-stat' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-copy' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o context.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/context.c -D__mod_name__=tools/vdb-copy -D__file_name__=context -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o helper.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/helper.c -D__mod_name__=tools/vdb-copy -D__file_name__=helper -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o coldefs.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/coldefs.c -D__mod_name__=tools/vdb-copy -D__file_name__=coldefs -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o get_platform.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/get_platform.c -D__mod_name__=tools/vdb-copy -D__file_name__=get_platform -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o namelist_tools.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/namelist_tools.c -D__mod_name__=tools/vdb-copy -D__file_name__=namelist_tools -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o copy_meta.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/copy_meta.c -D__mod_name__=tools/vdb-copy -D__file_name__=copy_meta -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o type_matcher.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/type_matcher.c -D__mod_name__=tools/vdb-copy -D__file_name__=type_matcher -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o redactval.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/redactval.c -D__mod_name__=tools/vdb-copy -D__file_name__=redactval -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o config_values.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/config_values.c -D__mod_name__=tools/vdb-copy -D__file_name__=config_values -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-copy.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/vdb-copy.c -D__mod_name__=tools/vdb-copy -D__file_name__=vdb-copy -D__file_ext__=c cp /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy/vdb-copy.kfg /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/ncbi/vdb-copy.kfg +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-copy.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 context.o helper.o coldefs.o get_platform.o namelist_tools.o copy_meta.o type_matcher.o redactval.o config_values.o vdb-copy.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-copy.2.11.3 vdb-copy.2 ln -s vdb-copy.2 vdb-copy make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-copy' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-copy' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/rd-filter-redact' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/rd-filter-redact' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/rd-filter-redact/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/rd-filter-redact/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/rd-filter-redact -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o read-filter-redact.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/rd-filter-redact/read-filter-redact.c -D__mod_name__=tools/rd-filter-redact -D__file_name__=read-filter-redact -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/read-filter-redact.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 read-filter-redact.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s read-filter-redact.2.11.3 read-filter-redact.2 ln -s read-filter-redact.2 read-filter-redact make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/rd-filter-redact' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/rd-filter-redact' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-config' g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o configure.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/configure.cpp -D__mod_name__=tools/vdb-config -D__file_name__=configure -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o util.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/util.cpp -D__mod_name__=tools/vdb-config -D__file_name__=util -D__file_ext__=cpp gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-config.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/vdb-config.c -D__mod_name__=tools/vdb-config -D__file_name__=vdb-config -D__file_ext__=c g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o interactive.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/interactive.cpp -D__mod_name__=tools/vdb-config -D__file_name__=interactive -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o interactive2.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/interactive2.cpp -D__mod_name__=tools/vdb-config -D__file_name__=interactive2 -D__file_ext__=cpp g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-config-model.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config/vdb-config-model.cpp -D__mod_name__=tools/vdb-config -D__file_name__=vdb-config-model -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ g++ -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-config.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 configure.o util.o vdb-config.o interactive.o interactive2.o vdb-config-model.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltui_cpp -ltui -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-config.2.11.3 vdb-config.2 ln -s vdb-config.2 vdb-config make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-config' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-config' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-info' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/align-info' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-info/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-info/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-info -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o align-info.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-info/align-info.c -D__mod_name__=tools/align-info -D__file_name__=align-info -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/align-info.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 align-info.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s align-info.2.11.3 align-info.2 ln -s align-info.2 align-info make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/align-info' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/align-info' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/qual-recalib-stat' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/qual-recalib-stat' make[5]: Nothing to be done for '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/std-cmn'. make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/qual-recalib-stat' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/qual-recalib-stat' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/prefetch' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kfile-no-q.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/kfile-no-q.c -D__mod_name__=tools/prefetch -D__file_name__=kfile-no-q -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o PrfMain.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/PrfMain.c -D__mod_name__=tools/prefetch -D__file_name__=PrfMain -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o prefetch.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/prefetch.c -D__mod_name__=tools/prefetch -D__file_name__=prefetch -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/prefetch.c: In function ‘PrfMainDownloadHttpFile’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/prefetch.c:1289:22: warning: variable ‘remote’ set but not used [-Wunused-but-set-variable] 1289 | const VPathStr * remote = NULL; | ^~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o PrfRetrier.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/PrfRetrier.c -D__mod_name__=tools/prefetch -D__file_name__=PrfRetrier -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o PrfOutFile.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch/PrfOutFile.c -D__mod_name__=tools/prefetch -D__file_name__=PrfOutFile -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/prefetch.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kfile-no-q.o PrfMain.o prefetch.o PrfRetrier.o PrfOutFile.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s prefetch.2.11.3 prefetch.2 ln -s prefetch.2 prefetch make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/prefetch' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/prefetch' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-decrypt' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-decrypt.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt/vdb-decrypt.c -D__mod_name__=tools/vdb-decrypt -D__file_name__=vdb-decrypt -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o shared.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt/shared.c -D__mod_name__=tools/vdb-decrypt -D__file_name__=shared -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-decrypt.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-decrypt.o shared.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-decrypt.2.11.3 vdb-decrypt.2 ln -s vdb-decrypt.2 vdb-decrypt gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-encrypt.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt/vdb-encrypt.c -D__mod_name__=tools/vdb-decrypt -D__file_name__=vdb-encrypt -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-encrypt.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-encrypt.o shared.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-encrypt.2.11.3 vdb-encrypt.2 ln -s vdb-encrypt.2 vdb-encrypt make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-decrypt' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-decrypt' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-validate' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-validate' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-validate/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-validate/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-validate -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-validate.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-validate/vdb-validate.c -D__mod_name__=tools/vdb-validate -D__file_name__=vdb-validate -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-validate/vdb-validate.c: In function ‘ric_align_generic.constprop’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-validate/vdb-validate.c:1382:33: warning: ‘last’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1382 | for (chunk = startId; chunk < endId; ) { | ~~~~~~^~~~~~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-validate.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb-validate.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-validate.2.11.3 vdb-validate.2 ln -s vdb-validate.2 vdb-validate g++ -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c++11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-validate/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-validate/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-validate -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o check-corrupt.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-validate/check-corrupt.cpp -D__mod_name__=tools/vdb-validate -D__file_name__=check-corrupt -D__file_ext__=cpp +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ g++ -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/check-corrupt.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 check-corrupt.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s check-corrupt.2.11.3 check-corrupt.2 ln -s check-corrupt.2 check-corrupt make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-validate' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-validate' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-sort' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o caps.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/caps.c -D__mod_name__=tools/sra-sort -D__file_name__=caps -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o mem.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/mem.c -D__mod_name__=tools/sra-sort -D__file_name__=mem -D__file_ext__=c In file included from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/mem.c:28: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/ctx.h:48:23: warning: ‘__file__’ defined but not used [-Wunused-const-variable=] 48 | static const char __file__ [] = STRINGIZE_DEFINE ( __file_name__ ) | ^~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/mem.c:33:1: note: in expansion of macro ‘FILE_ENTRY’ 33 | FILE_ENTRY ( mem ); | ^~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/ctx.h:47:23: warning: ‘__mod__’ defined but not used [-Wunused-const-variable=] 47 | static const char __mod__ [] = "tools/sra-sort"; \ | ^~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/mem.c:33:1: note: in expansion of macro ‘FILE_ENTRY’ 33 | FILE_ENTRY ( mem ); | ^~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o membank.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/membank.c -D__mod_name__=tools/sra-sort -D__file_name__=membank -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o paged-membank.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/paged-membank.c -D__mod_name__=tools/sra-sort -D__file_name__=paged-membank -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o paged-mmapbank.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/paged-mmapbank.c -D__mod_name__=tools/sra-sort -D__file_name__=paged-mmapbank -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o except.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/except.c -D__mod_name__=tools/sra-sort -D__file_name__=except -D__file_ext__=c In file included from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/except.c:28: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/ctx.h:48:23: warning: ‘__file__’ defined but not used [-Wunused-const-variable=] 48 | static const char __file__ [] = STRINGIZE_DEFINE ( __file_name__ ) | ^~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/except.c:42:1: note: in expansion of macro ‘FILE_ENTRY’ 42 | FILE_ENTRY ( except ); | ^~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/ctx.h:47:23: warning: ‘__mod__’ defined but not used [-Wunused-const-variable=] 47 | static const char __mod__ [] = "tools/sra-sort"; \ | ^~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/except.c:42:1: note: in expansion of macro ‘FILE_ENTRY’ 42 | FILE_ENTRY ( except ); | ^~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o idx-mapping.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/idx-mapping.c -D__mod_name__=tools/sra-sort -D__file_name__=idx-mapping -D__file_ext__=c In file included from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/idx-mapping.c:28: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/ctx.h:48:23: warning: ‘__file__’ defined but not used [-Wunused-const-variable=] 48 | static const char __file__ [] = STRINGIZE_DEFINE ( __file_name__ ) | ^~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/idx-mapping.c:32:1: note: in expansion of macro ‘FILE_ENTRY’ 32 | FILE_ENTRY ( idx-mapping ); | ^~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/ctx.h:47:23: warning: ‘__mod__’ defined but not used [-Wunused-const-variable=] 47 | static const char __mod__ [] = "tools/sra-sort"; \ | ^~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/idx-mapping.c:32:1: note: in expansion of macro ‘FILE_ENTRY’ 32 | FILE_ENTRY ( idx-mapping ); | ^~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o map-file.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/map-file.c -D__mod_name__=tools/sra-sort -D__file_name__=map-file -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o col-pair.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/col-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=col-pair -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o row-set.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/row-set.c -D__mod_name__=tools/sra-sort -D__file_name__=row-set -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o simple-row-set.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/simple-row-set.c -D__mod_name__=tools/sra-sort -D__file_name__=simple-row-set -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o mapping-row-set.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/mapping-row-set.c -D__mod_name__=tools/sra-sort -D__file_name__=mapping-row-set -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sorting-row-set.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/sorting-row-set.c -D__mod_name__=tools/sra-sort -D__file_name__=sorting-row-set -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o meta-pair.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/meta-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=meta-pair -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o dir-pair.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/dir-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=dir-pair -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o tbl-pair.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/tbl-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=tbl-pair -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o db-pair.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/db-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=db-pair -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o glob-poslen.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/glob-poslen.c -D__mod_name__=tools/sra-sort -D__file_name__=glob-poslen -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o poslen-col-pair.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/poslen-col-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=poslen-col-pair -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o ref-alignid-col.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/ref-alignid-col.c -D__mod_name__=tools/sra-sort -D__file_name__=ref-alignid-col -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o buff-writer.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/buff-writer.c -D__mod_name__=tools/sra-sort -D__file_name__=buff-writer -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o id-mapper-col.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/id-mapper-col.c -D__mod_name__=tools/sra-sort -D__file_name__=id-mapper-col -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o capture-first-half-aligned.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/capture-first-half-aligned.c -D__mod_name__=tools/sra-sort -D__file_name__=capture-first-half-aligned -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o run.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/run.c -D__mod_name__=tools/sra-sort -D__file_name__=run -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sra-sort.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/sra-sort.c -D__mod_name__=tools/sra-sort -D__file_name__=sra-sort -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o xcheck-ref-align.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/xcheck-ref-align.c -D__mod_name__=tools/sra-sort -D__file_name__=xcheck-ref-align -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o csra-tbl.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/csra-tbl.c -D__mod_name__=tools/sra-sort -D__file_name__=csra-tbl -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o csra-pair.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/csra-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=csra-pair -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sra-sort.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 caps.o mem.o membank.o paged-membank.o paged-mmapbank.o except.o idx-mapping.o map-file.o col-pair.o row-set.o simple-row-set.o mapping-row-set.o sorting-row-set.o meta-pair.o dir-pair.o tbl-pair.o db-pair.o glob-poslen.o poslen-col-pair.o ref-alignid-col.o buff-writer.o id-mapper-col.o capture-first-half-aligned.o run.o sra-sort.o xcheck-ref-align.o csra-tbl.o csra-pair.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sra-sort.2.11.3 sra-sort.2 ln -s sra-sort.2 sra-sort gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o csra-tbl.cg.o -DSEQUENCE_BEFORE_SECONDARY=0 /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/csra-tbl.c -D__mod_name__=tools/sra-sort -D__file_name__=csra-tbl -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o csra-pair.cg.o -DSEQUENCE_BEFORE_SECONDARY=0 /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort/csra-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=csra-pair -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/sra-sort-cg.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 caps.o mem.o membank.o paged-membank.o paged-mmapbank.o except.o idx-mapping.o map-file.o col-pair.o row-set.o simple-row-set.o mapping-row-set.o sorting-row-set.o meta-pair.o dir-pair.o tbl-pair.o db-pair.o glob-poslen.o poslen-col-pair.o ref-alignid-col.o buff-writer.o id-mapper-col.o capture-first-half-aligned.o run.o sra-sort.o xcheck-ref-align.o csra-tbl.cg.o csra-pair.cg.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s sra-sort-cg.2.11.3 sra-sort-cg.2 ln -s sra-sort-cg.2 sra-sort-cg make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/sra-sort' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/sra-sort' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cache-mgr' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/cache-mgr' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cache-mgr/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cache-mgr/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cache-mgr -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cache-mgr.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cache-mgr/cache-mgr.c -D__mod_name__=tools/cache-mgr -D__file_name__=cache-mgr -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/cache-mgr.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 cache-mgr.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s cache-mgr.2.11.3 cache-mgr.2 ln -s cache-mgr.2 cache-mgr make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/cache-mgr' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cache-mgr' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vcf-loader' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vcf-grammar.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/vcf-grammar.c -D__mod_name__=tools/vcf-loader -D__file_name__=vcf-grammar -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vcf-lex.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/vcf-lex.c -D__mod_name__=tools/vcf-loader -D__file_name__=vcf-lex -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/vcf-lex.c:1544:17: warning: ‘yyunput’ defined but not used [-Wunused-function] 1544 | static void yyunput (int c, register char * yy_bp , yyscan_t yyscanner) | ^~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vcf-reader.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/vcf-reader.c -D__mod_name__=tools/vcf-loader -D__file_name__=vcf-reader -D__file_ext__=c In file included from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/vcf-reader.c:30: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/vcf-reader.c: In function ‘OpenDataLine’: /usr/include/ncbi-vdb/klib/rc.h:92:9: warning: statement with no effect [-Wunused-value] 92 | ( rc_t ) ( rc ) | ^~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/vcf-reader.c:231:13: note: in expansion of macro ‘SET_RC_FILE_FUNC_LINE’ 231 | SET_RC_FILE_FUNC_LINE(rc); | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/ncbi-vdb/klib/rc.h:92:9: warning: statement with no effect [-Wunused-value] 92 | ( rc_t ) ( rc ) | ^~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/vcf-reader.c:237:9: note: in expansion of macro ‘SET_RC_FILE_FUNC_LINE’ 237 | SET_RC_FILE_FUNC_LINE(rc); | ^~~~~~~~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/vcf-reader.c: In function ‘DataItem’: /usr/include/ncbi-vdb/klib/rc.h:92:9: warning: statement with no effect [-Wunused-value] 92 | ( rc_t ) ( rc ) | ^~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/vcf-reader.c:307:17: note: in expansion of macro ‘SET_RC_FILE_FUNC_LINE’ 307 | SET_RC_FILE_FUNC_LINE(rc); | ^~~~~~~~~~~~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vcf-database.pic.o -fPIC -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall -D_LIBRARY /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader/vcf-database.c -D__mod_name__=tools/vcf-loader -D__file_name__=vcf-database -D__file_ext__=c ar -rc /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib/libvcfloader.a vcf-grammar.pic.o vcf-lex.pic.o vcf-reader.pic.o vcf-database.pic.o make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vcf-loader' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vcf-loader' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/copycat' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o copycat.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/copycat.c -D__mod_name__=tools/copycat -D__file_name__=copycat -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o ccfileformat.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/ccfileformat.c -D__mod_name__=tools/copycat -D__file_name__=ccfileformat -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/ccfileformat.c:127:19: warning: ‘magicpath’ defined but not used [-Wunused-const-variable=] 127 | static const char magicpath [] = "/usr/share/misc/magic"; | ^~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/ccfileformat.c:105:19: warning: ‘classtable’ defined but not used [-Wunused-const-variable=] 105 | static const char classtable [] = | ^~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cccat.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/cccat.c -D__mod_name__=tools/copycat -D__file_name__=cccat -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cctree.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/cctree.c -D__mod_name__=tools/copycat -D__file_name__=cctree -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cctree-dump.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/cctree-dump.c -D__mod_name__=tools/copycat -D__file_name__=cctree-dump -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cctar.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/cctar.c -D__mod_name__=tools/copycat -D__file_name__=cctar -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o ccsra.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/ccsra.c -D__mod_name__=tools/copycat -D__file_name__=ccsra -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o ccsubchunk.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/ccsubchunk.c -D__mod_name__=tools/copycat -D__file_name__=ccsubchunk -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o ccfile.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat/ccfile.c -D__mod_name__=tools/copycat -D__file_name__=ccfile -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/copycat.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 copycat.o ccfileformat.o cccat.o cctree.o cctree-dump.o cctar.o ccsra.o ccsubchunk.o ccfile.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -lkff -lmagic -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s copycat.2.11.3 copycat.2 ln -s copycat.2 copycat make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/copycat' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/copycat' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/fasterq-dump' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o helper.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/helper.c -D__mod_name__=tools/fasterq-dump -D__file_name__=helper -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o temp_dir.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/temp_dir.c -D__mod_name__=tools/fasterq-dump -D__file_name__=temp_dir -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/temp_dir.c: In function ‘remove_temp_dir’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/temp_dir.c:231:12: warning: ‘rc’ may be used uninitialized in this function [-Wmaybe-uninitialized] 231 | return rc; | ^~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o progress_thread.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/progress_thread.c -D__mod_name__=tools/fasterq-dump -D__file_name__=progress_thread -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cleanup_task.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/cleanup_task.c -D__mod_name__=tools/fasterq-dump -D__file_name__=cleanup_task -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o index.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/index.c -D__mod_name__=tools/fasterq-dump -D__file_name__=index -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o lookup_writer.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/lookup_writer.c -D__mod_name__=tools/fasterq-dump -D__file_name__=lookup_writer -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o lookup_reader.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/lookup_reader.c -D__mod_name__=tools/fasterq-dump -D__file_name__=lookup_reader -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/lookup_reader.c: In function ‘full_table_seek’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/lookup_reader.c:168:18: warning: ‘found_len’ may be used uninitialized in this function [-Wmaybe-uninitialized] 168 | curr += found_len; | ~~~~~^~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/lookup_reader.c:162:16: note: ‘found_len’ was declared here 162 | size_t found_len; | ^~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/lookup_reader.c: In function ‘seek_lookup_reader’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/lookup_reader.c:168:18: warning: ‘found_len’ may be used uninitialized in this function [-Wmaybe-uninitialized] 168 | curr += found_len; | ~~~~~^~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/lookup_reader.c:162:16: note: ‘found_len’ was declared here 162 | size_t found_len; | ^~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o file_printer.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/file_printer.c -D__mod_name__=tools/fasterq-dump -D__file_name__=file_printer -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o merge_sorter.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/merge_sorter.c -D__mod_name__=tools/fasterq-dump -D__file_name__=merge_sorter -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o sorter.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/sorter.c -D__mod_name__=tools/fasterq-dump -D__file_name__=sorter -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cmn_iter.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/cmn_iter.c -D__mod_name__=tools/fasterq-dump -D__file_name__=cmn_iter -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/cmn_iter.c: In function ‘cmn_get_acc_type’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/cmn_iter.c:613:36: warning: ‘pf’ may be used uninitialized in this function [-Wmaybe-uninitialized] 613 | if ( SRA_PLATFORM_PACBIO_SMRT == pf ) { | ^ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/cmn_iter.c:611:37: note: ‘pf’ was declared here 611 | uint8_t pf; | ^~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o raw_read_iter.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/raw_read_iter.c -D__mod_name__=tools/fasterq-dump -D__file_name__=raw_read_iter -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o special_iter.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/special_iter.c -D__mod_name__=tools/fasterq-dump -D__file_name__=special_iter -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fastq_iter.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/fastq_iter.c -D__mod_name__=tools/fasterq-dump -D__file_name__=fastq_iter -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o join.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/join.c -D__mod_name__=tools/fasterq-dump -D__file_name__=join -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o tbl_join.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/tbl_join.c -D__mod_name__=tools/fasterq-dump -D__file_name__=tbl_join -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o join_results.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/join_results.c -D__mod_name__=tools/fasterq-dump -D__file_name__=join_results -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o temp_registry.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/temp_registry.c -D__mod_name__=tools/fasterq-dump -D__file_name__=temp_registry -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o copy_machine.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/copy_machine.c -D__mod_name__=tools/fasterq-dump -D__file_name__=copy_machine -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o concatenator.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/concatenator.c -D__mod_name__=tools/fasterq-dump -D__file_name__=concatenator -D__file_ext__=c In file included from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/concatenator.h:43, from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/concatenator.c:27: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/concatenator.c: In function ‘execute_concat_compressed’: /usr/include/ncbi-vdb/kfs/directory.h:619:42: warning: ‘fmt’ may be used uninitialized in this function [-Wmaybe-uninitialized] 619 | #define KDirectoryCreateFile NAME_VERS ( KDirectoryCreateFile , KDIRECTORY_VERS ) | ^~~~~~~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/concatenator.c:61:22: note: ‘fmt’ was declared here 61 | const char * fmt; | ^~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fasterq-dump.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump/fasterq-dump.c -D__mod_name__=tools/fasterq-dump -D__file_name__=fasterq-dump -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/fasterq-dump.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 helper.o temp_dir.o progress_thread.o cleanup_task.o index.o lookup_writer.o lookup_reader.o file_printer.o merge_sorter.o sorter.o cmn_iter.o raw_read_iter.o special_iter.o fastq_iter.o join.o tbl_join.o join_results.o temp_registry.o copy_machine.o concatenator.o fasterq-dump.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s fasterq-dump.2.11.3 fasterq-dump.2 ln -s fasterq-dump.2 fasterq-dump make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/fasterq-dump' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fasterq-dump' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/ccextract' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/ccextract' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/ccextract/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/ccextract/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/ccextract -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o ccextract.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/ccextract/ccextract.c -D__mod_name__=tools/ccextract -D__file_name__=ccextract -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/ccextract.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 ccextract.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lkxfs -lkxml -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s ccextract.2.11.3 ccextract.2 ln -s ccextract.2 ccextract make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/ccextract' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/ccextract' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/pacbio-load' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pl-context.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-context.c -D__mod_name__=tools/pacbio-load -D__file_name__=pl-context -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pl-tools.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-tools.c -D__mod_name__=tools/pacbio-load -D__file_name__=pl-tools -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pl-zmw.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-zmw.c -D__mod_name__=tools/pacbio-load -D__file_name__=pl-zmw -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pl-basecalls_cmn.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-basecalls_cmn.c -D__mod_name__=tools/pacbio-load -D__file_name__=pl-basecalls_cmn -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pl-sequence.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-sequence.c -D__mod_name__=tools/pacbio-load -D__file_name__=pl-sequence -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pl-consensus.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-consensus.c -D__mod_name__=tools/pacbio-load -D__file_name__=pl-consensus -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-consensus.c: In function ‘check_Consensus_totalcount’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-consensus.c:63:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 63 | if ( res ) | ^~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-consensus.c:66:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 66 | if ( res ) | ^~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pl-passes.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-passes.c -D__mod_name__=tools/pacbio-load -D__file_name__=pl-passes -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pl-metrics.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-metrics.c -D__mod_name__=tools/pacbio-load -D__file_name__=pl-metrics -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pl-regions.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-regions.c -D__mod_name__=tools/pacbio-load -D__file_name__=pl-regions -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pl-progress.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pl-progress.c -D__mod_name__=tools/pacbio-load -D__file_name__=pl-progress -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o pacbio-load.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load/pacbio-load.c -D__mod_name__=tools/pacbio-load -D__file_name__=pacbio-load -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/pacbio-load.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 pl-context.o pl-tools.o pl-zmw.o pl-basecalls_cmn.o pl-sequence.o pl-consensus.o pl-passes.o pl-metrics.o pl-regions.o pl-progress.o pacbio-load.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lkdf5 -lload -lhdf5_serial -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s pacbio-load.2.11.3 pacbio-load.2 ln -s pacbio-load.2 pacbio-load make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/pacbio-load' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/pacbio-load' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/fuse' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o log.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/log.c -D__mod_name__=tools/fuse -D__file_name__=log -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o node.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/node.c -D__mod_name__=tools/fuse -D__file_name__=node -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o accessor.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/accessor.c -D__mod_name__=tools/fuse -D__file_name__=accessor -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kfile-accessor.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/kfile-accessor.c -D__mod_name__=tools/fuse -D__file_name__=kfile-accessor -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o remote-xml.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/remote-xml.c -D__mod_name__=tools/fuse -D__file_name__=remote-xml -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o remote-cache.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/remote-cache.c -D__mod_name__=tools/fuse -D__file_name__=remote-cache -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o remote-link.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/remote-link.c -D__mod_name__=tools/fuse -D__file_name__=remote-link -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o remote-file.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/remote-file.c -D__mod_name__=tools/fuse -D__file_name__=remote-file -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o remote-directory.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/remote-directory.c -D__mod_name__=tools/fuse -D__file_name__=remote-directory -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o remote-fuser-sys.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/unix/remote-fuser-sys.c -D__mod_name__=tools/fuse -D__file_name__=remote-fuser-sys -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o remote-fuser.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse/remote-fuser.c -D__mod_name__=tools/fuse -D__file_name__=remote-fuser -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/remote-fuser.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 log.o node.o accessor.o kfile-accessor.o remote-xml.o remote-cache.o remote-link.o remote-file.o remote-directory.o remote-fuser-sys.o remote-fuser.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lfuse -lrt -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s remote-fuser.2.11.3 remote-fuser.2 ln -s remote-fuser.2 remote-fuser make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/fuse' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/fuse' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-diff' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o namelist_tools.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/namelist_tools.c -D__mod_name__=tools/vdb-diff -D__file_name__=namelist_tools -D__file_ext__=c /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/namelist_tools.c: In function ‘compare_2_namelists’: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/namelist_tools.c:364:41: warning: ‘found_in_both’ may be used uninitialized in this function [-Wmaybe-uninitialized] 364 | KOutMsg( "the 2 accessions have not the same set of columns! ( %u found in both )\n", found_in_both ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o coldefs.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/coldefs.c -D__mod_name__=tools/vdb-diff -D__file_name__=coldefs -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-diff-context.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/vdb-diff-context.c -D__mod_name__=tools/vdb-diff -D__file_name__=vdb-diff-context -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cmn.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/cmn.c -D__mod_name__=tools/vdb-diff -D__file_name__=cmn -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o row_by_row.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/row_by_row.c -D__mod_name__=tools/vdb-diff -D__file_name__=row_by_row -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o col_by_col.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/col_by_col.c -D__mod_name__=tools/vdb-diff -D__file_name__=col_by_col -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb-diff.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff/vdb-diff.c -D__mod_name__=tools/vdb-diff -D__file_name__=vdb-diff -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-diff.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 namelist_tools.o coldefs.o vdb-diff-context.o cmn.o row_by_row.o col_by_col.o vdb-diff.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-diff.2.11.3 vdb-diff.2 ln -s vdb-diff.2 vdb-diff make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-diff' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-diff' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kget' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/kget' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kget/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kget/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kget -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o kget.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kget/kget.c -D__mod_name__=tools/kget -D__file_name__=kget -D__file_ext__=c In file included from /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kget/kget.c:36: /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kget/kget.c: In function ‘full_download’: /usr/include/ncbi-vdb/kfs/directory.h:619:42: warning: ‘outfile’ may be used uninitialized in this function [-Wmaybe-uninitialized] 619 | #define KDirectoryCreateFile NAME_VERS ( KDirectoryCreateFile , KDIRECTORY_VERS ) | ^~~~~~~~~~~~~~~~~~~~ /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kget/kget.c:715:48: note: ‘outfile’ was declared here 715 | char * outfile; | ^~~~~~~ +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-get.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 kget.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-get.2.11.3 vdb-get.2 ln -s vdb-get.2 vdb-get make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/kget' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/kget' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/ngs-pileup' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/ngs-pileup' make[5]: Nothing to be done for '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/std-cmn'. make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/ngs-pileup' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/ngs-pileup' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-sql' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-sql' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-sql/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-sql/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-sql -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o vdb_shell.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-sql/vdb_shell.c -D__mod_name__=tools/vdb-sql -D__file_name__=vdb_shell -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-sql.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 vdb_shell.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lvdb-sqlite -lngs-c++ -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-sql.2.11.3 vdb-sql.2 ln -s vdb-sql.2 vdb-sql gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-sql/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-sql/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-sql -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o fastconv.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-sql/fastconv.c -D__mod_name__=tools/vdb-sql -D__file_name__=fastconv -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/fastconv -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 fastconv.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lvdb-sqlite -lngs-c++ -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/vdb-sql' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/vdb-sql' make[4]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load' make[5]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/cg-load' gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o cg-load.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/cg-load.c -D__mod_name__=tools/cg-load -D__file_name__=cg-load -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o factory-evidence-intervals.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/factory-evidence-intervals.c -D__mod_name__=tools/cg-load -D__file_name__=factory-evidence-intervals -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o factory-evidence-dnbs.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/factory-evidence-dnbs.c -D__mod_name__=tools/cg-load -D__file_name__=factory-evidence-dnbs -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o factory-mappings.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/factory-mappings.c -D__mod_name__=tools/cg-load -D__file_name__=factory-mappings -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o factory-reads.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/factory-reads.c -D__mod_name__=tools/cg-load -D__file_name__=factory-reads -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/linux 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/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/writer-algn.c -D__mod_name__=tools/cg-load -D__file_name__=writer-algn -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o writer-evidence-dnbs.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/writer-evidence-dnbs.c -D__mod_name__=tools/cg-load -D__file_name__=writer-evidence-dnbs -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o writer-evidence-intervals.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/writer-evidence-intervals.c -D__mod_name__=tools/cg-load -D__file_name__=writer-evidence-intervals -D__file_ext__=c gcc -c -g -O2 -ffile-prefix-map=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/ncbi-vdb -std=c11 -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/interfaces/override -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/linux -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/unix -I/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -MD -o writer-seq.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load/writer-seq.c -D__mod_name__=tools/cg-load -D__file_name__=writer-seq -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/cg-load.2.11.3 -Wl,-z,relro -Wl,-z,now -DNDEBUG -m64 cg-load.o factory-evidence-intervals.o factory-evidence-dnbs.o factory-mappings.o factory-reads.o factory-tag-lfr.o f1_3.o f1_5.o f1_7.o f2_0.o f2_2.o f2_4.o f2_5.o file.o file-version-factory.o formats.o writer-algn.o writer-evidence-dnbs.o writer-evidence-intervals.o writer-seq.o -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lload -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lzstd -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s cg-load.2.11.3 cg-load.2 ln -s cg-load.2 cg-load make[5]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/cg-load' make[4]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools/cg-load' make[3]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/tools' make[2]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' make[1]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--no-parallel debian/rules override_dh_prep make[1]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' dh_prep -X debian/tmp make[1]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' debian/rules override_dh_auto_install make[1]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' dh_auto_install -- KONFIG_DIR=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/sra-toolkit/etc/ncbi make -j1 install DESTDIR=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3\+dfsg/debian/sra-toolkit AM_UPDATE_INFO_DIR=no KONFIG_DIR=/build/sra-sdk-LzoAU7/sra-sdk-2.11.3\+dfsg/debian/sra-toolkit/etc/ncbi make[2]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' Checking make status of tools... make[3]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' Installing executables to /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/tmp/usr/bin/... Installing abi-dump...done Installing align-cache...done Installing align-info...done Installing bam-load...done Installing cache-mgr...done Installing cg-load...done Installing illumina-dump...done Installing kar...done Installing kdbmeta...done Installing latf-load...done Installing md5cp...done Installing rcexplain...done Installing read-filter-redact...done Installing sff-dump...done Installing sra-sort...done Installing sra-sort-cg...done Installing sra-stat...done Installing test-sra...done Installing vdb-config...done Installing vdb-copy...done Installing vdb-decrypt...done Installing vdb-diff...done Installing vdb-encrypt...done Installing vdb-get...done Installing vdb-lock...done Installing vdb-passwd...done Installing vdb-unlock...done Installing vdb-validate...done Installing sratools...done Installing pacbio-load...done Installing symlink for fasterq-dump...done Installing symlink for fastq-dump...done Installing symlink for sam-dump...done Installing symlink for prefetch...done Installing symlink for srapath...done Installing symlink for sra-pileup...done Installing symlink for vdb-dump...done Installing abi-load...not found Installing ccextract...done Installing copycat...done Installing fastq-load...not found Installing helicos-load...not found Installing illumina-load...not found Installing remote-fuser...done Installing sff-load...not found Installing srf-load...not found Installing sra-toolkit...not found Installing pacbio-loadxml...not found Installing magic file...done Installing configuration files to /build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg/debian/sra-toolkit/etc/ncbi make[3]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' make[2]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' make[1]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' # upstream installs versioned *.a libs - we only want a single version ls -l debian/tmp/usr/bin total 28564 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 abi-dump -> abi-dump.2 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 abi-dump.2 -> abi-dump.2.11.3 -rwxr-xr-x 1 builduser builduser 292928 Apr 8 16:37 abi-dump.2.11.3 lrwxrwxrwx 1 builduser builduser 13 Apr 8 16:37 align-cache -> align-cache.2 lrwxrwxrwx 1 builduser builduser 18 Apr 8 16:37 align-cache.2 -> align-cache.2.11.3 -rwxr-xr-x 1 builduser builduser 296232 Apr 8 16:37 align-cache.2.11.3 lrwxrwxrwx 1 builduser builduser 12 Apr 8 16:37 align-info -> align-info.2 lrwxrwxrwx 1 builduser builduser 17 Apr 8 16:37 align-info.2 -> align-info.2.11.3 -rwxr-xr-x 1 builduser builduser 116736 Apr 8 16:37 align-info.2.11.3 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 bam-load -> bam-load.2 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 bam-load.2 -> bam-load.2.11.3 -rwxr-xr-x 1 builduser builduser 1111408 Apr 8 16:37 bam-load.2.11.3 lrwxrwxrwx 1 builduser builduser 11 Apr 8 16:37 cache-mgr -> cache-mgr.2 lrwxrwxrwx 1 builduser builduser 16 Apr 8 16:37 cache-mgr.2 -> cache-mgr.2.11.3 -rwxr-xr-x 1 builduser builduser 149248 Apr 8 16:37 cache-mgr.2.11.3 lrwxrwxrwx 1 builduser builduser 11 Apr 8 16:37 ccextract -> ccextract.2 lrwxrwxrwx 1 builduser builduser 16 Apr 8 16:37 ccextract.2 -> ccextract.2.11.3 -rwxr-xr-x 1 builduser builduser 211504 Apr 8 16:37 ccextract.2.11.3 lrwxrwxrwx 1 builduser builduser 9 Apr 8 16:37 cg-load -> cg-load.2 lrwxrwxrwx 1 builduser builduser 14 Apr 8 16:37 cg-load.2 -> cg-load.2.11.3 -rwxr-xr-x 1 builduser builduser 620832 Apr 8 16:37 cg-load.2.11.3 lrwxrwxrwx 1 builduser builduser 9 Apr 8 16:37 copycat -> copycat.2 lrwxrwxrwx 1 builduser builduser 14 Apr 8 16:37 copycat.2 -> copycat.2.11.3 -rwxr-xr-x 1 builduser builduser 466224 Apr 8 16:37 copycat.2.11.3 lrwxrwxrwx 1 builduser builduser 14 Apr 8 16:37 fasterq-dump -> fasterq-dump.2 -rwxr-xr-x 1 builduser builduser 801200 Apr 8 16:37 fasterq-dump-orig.2.11.3 lrwxrwxrwx 1 builduser builduser 19 Apr 8 16:37 fasterq-dump.2 -> fasterq-dump.2.11.3 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 fasterq-dump.2.11.3 -> sratools.2.11.3 lrwxrwxrwx 1 builduser builduser 12 Apr 8 16:37 fastq-dump -> fastq-dump.2 -rwxr-xr-x 1 builduser builduser 374584 Apr 8 16:37 fastq-dump-orig.2.11.3 lrwxrwxrwx 1 builduser builduser 17 Apr 8 16:37 fastq-dump.2 -> fastq-dump.2.11.3 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 fastq-dump.2.11.3 -> sratools.2.11.3 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 illumina-dump -> illumina-dump.2 lrwxrwxrwx 1 builduser builduser 20 Apr 8 16:37 illumina-dump.2 -> illumina-dump.2.11.3 -rwxr-xr-x 1 builduser builduser 278456 Apr 8 16:37 illumina-dump.2.11.3 lrwxrwxrwx 1 builduser builduser 5 Apr 8 16:37 kar -> kar.2 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 kar.2 -> kar.2.11.3 -rwxr-xr-x 1 builduser builduser 216192 Apr 8 16:37 kar.2.11.3 lrwxrwxrwx 1 builduser builduser 9 Apr 8 16:37 kdbmeta -> kdbmeta.2 lrwxrwxrwx 1 builduser builduser 14 Apr 8 16:37 kdbmeta.2 -> kdbmeta.2.11.3 -rwxr-xr-x 1 builduser builduser 139832 Apr 8 16:37 kdbmeta.2.11.3 lrwxrwxrwx 1 builduser builduser 11 Apr 8 16:37 latf-load -> latf-load.2 lrwxrwxrwx 1 builduser builduser 16 Apr 8 16:37 latf-load.2 -> latf-load.2.11.3 -rwxr-xr-x 1 builduser builduser 491560 Apr 8 16:37 latf-load.2.11.3 -rw-r--r-- 1 builduser builduser 659181 Apr 8 16:37 magic lrwxrwxrwx 1 builduser builduser 7 Apr 8 16:37 md5cp -> md5cp.2 lrwxrwxrwx 1 builduser builduser 12 Apr 8 16:37 md5cp.2 -> md5cp.2.11.3 -rwxr-xr-x 1 builduser builduser 111144 Apr 8 16:37 md5cp.2.11.3 lrwxrwxrwx 1 builduser builduser 13 Apr 8 16:37 pacbio-load -> pacbio-load.2 lrwxrwxrwx 1 builduser builduser 18 Apr 8 16:37 pacbio-load.2 -> pacbio-load.2.11.3 -rwxr-xr-x 1 builduser builduser 400264 Apr 8 16:37 pacbio-load.2.11.3 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 prefetch -> prefetch.2 -rwxr-xr-x 1 builduser builduser 412736 Apr 8 16:37 prefetch-orig.2.11.3 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 prefetch.2 -> prefetch.2.11.3 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 prefetch.2.11.3 -> sratools.2.11.3 lrwxrwxrwx 1 builduser builduser 11 Apr 8 16:37 rcexplain -> rcexplain.2 lrwxrwxrwx 1 builduser builduser 16 Apr 8 16:37 rcexplain.2 -> rcexplain.2.11.3 -rwxr-xr-x 1 builduser builduser 87712 Apr 8 16:37 rcexplain.2.11.3 lrwxrwxrwx 1 builduser builduser 20 Apr 8 16:37 read-filter-redact -> read-filter-redact.2 lrwxrwxrwx 1 builduser builduser 25 Apr 8 16:37 read-filter-redact.2 -> read-filter-redact.2.11.3 -rwxr-xr-x 1 builduser builduser 126784 Apr 8 16:37 read-filter-redact.2.11.3 lrwxrwxrwx 1 builduser builduser 14 Apr 8 16:37 remote-fuser -> remote-fuser.2 lrwxrwxrwx 1 builduser builduser 19 Apr 8 16:37 remote-fuser.2 -> remote-fuser.2.11.3 -rwxr-xr-x 1 builduser builduser 341912 Apr 8 16:37 remote-fuser.2.11.3 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 sam-dump -> sam-dump.2 -rwxr-xr-x 1 builduser builduser 877928 Apr 8 16:37 sam-dump-orig.2.11.3 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 sam-dump.2 -> sam-dump.2.11.3 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 sam-dump.2.11.3 -> sratools.2.11.3 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 sff-dump -> sff-dump.2 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 sff-dump.2 -> sff-dump.2.11.3 -rwxr-xr-x 1 builduser builduser 253936 Apr 8 16:37 sff-dump.2.11.3 lrwxrwxrwx 1 builduser builduser 12 Apr 8 16:37 sra-pileup -> sra-pileup.2 -rwxr-xr-x 1 builduser builduser 472704 Apr 8 16:37 sra-pileup-orig.2.11.3 lrwxrwxrwx 1 builduser builduser 17 Apr 8 16:37 sra-pileup.2 -> sra-pileup.2.11.3 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 sra-pileup.2.11.3 -> sratools.2.11.3 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 sra-sort -> sra-sort.2 lrwxrwxrwx 1 builduser builduser 13 Apr 8 16:37 sra-sort-cg -> sra-sort-cg.2 lrwxrwxrwx 1 builduser builduser 18 Apr 8 16:37 sra-sort-cg.2 -> sra-sort-cg.2.11.3 -rwxr-xr-x 1 builduser builduser 862032 Apr 8 16:37 sra-sort-cg.2.11.3 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 sra-sort.2 -> sra-sort.2.11.3 -rwxr-xr-x 1 builduser builduser 865800 Apr 8 16:37 sra-sort.2.11.3 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 sra-stat -> sra-stat.2 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 sra-stat.2 -> sra-stat.2.11.3 -rwxr-xr-x 1 builduser builduser 335672 Apr 8 16:37 sra-stat.2.11.3 lrwxrwxrwx 1 builduser builduser 9 Apr 8 16:37 srapath -> srapath.2 -rwxr-xr-x 1 builduser builduser 279264 Apr 8 16:37 srapath-orig.2.11.3 lrwxrwxrwx 1 builduser builduser 14 Apr 8 16:37 srapath.2 -> srapath.2.11.3 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 srapath.2.11.3 -> sratools.2.11.3 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 sratools -> sratools.2 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 sratools.2 -> sratools.2.11.3 -rwxr-xr-x 1 builduser builduser 10823544 Apr 8 16:37 sratools.2.11.3 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 test-sra -> test-sra.2 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 test-sra.2 -> test-sra.2.11.3 -rwxr-xr-x 1 builduser builduser 281608 Apr 8 16:37 test-sra.2.11.3 lrwxrwxrwx 1 builduser builduser 12 Apr 8 16:37 vdb-config -> vdb-config.2 lrwxrwxrwx 1 builduser builduser 17 Apr 8 16:37 vdb-config.2 -> vdb-config.2.11.3 -rwxr-xr-x 1 builduser builduser 3982248 Apr 8 16:37 vdb-config.2.11.3 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 vdb-copy -> vdb-copy.2 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 vdb-copy.2 -> vdb-copy.2.11.3 -rwxr-xr-x 1 builduser builduser 361408 Apr 8 16:37 vdb-copy.2.11.3 lrwxrwxrwx 1 builduser builduser 13 Apr 8 16:37 vdb-decrypt -> vdb-decrypt.2 lrwxrwxrwx 1 builduser builduser 18 Apr 8 16:37 vdb-decrypt.2 -> vdb-decrypt.2.11.3 -rwxr-xr-x 1 builduser builduser 136376 Apr 8 16:37 vdb-decrypt.2.11.3 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 vdb-diff -> vdb-diff.2 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 vdb-diff.2 -> vdb-diff.2.11.3 -rwxr-xr-x 1 builduser builduser 173184 Apr 8 16:37 vdb-diff.2.11.3 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 vdb-dump -> vdb-dump.2 -rwxr-xr-x 1 builduser builduser 965224 Apr 8 16:37 vdb-dump-orig.2.11.3 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 vdb-dump.2 -> vdb-dump.2.11.3 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 vdb-dump.2.11.3 -> sratools.2.11.3 lrwxrwxrwx 1 builduser builduser 13 Apr 8 16:37 vdb-encrypt -> vdb-encrypt.2 lrwxrwxrwx 1 builduser builduser 18 Apr 8 16:37 vdb-encrypt.2 -> vdb-encrypt.2.11.3 -rwxr-xr-x 1 builduser builduser 136328 Apr 8 16:37 vdb-encrypt.2.11.3 lrwxrwxrwx 1 builduser builduser 9 Apr 8 16:37 vdb-get -> vdb-get.2 lrwxrwxrwx 1 builduser builduser 14 Apr 8 16:37 vdb-get.2 -> vdb-get.2.11.3 -rwxr-xr-x 1 builduser builduser 137792 Apr 8 16:37 vdb-get.2.11.3 lrwxrwxrwx 1 builduser builduser 10 Apr 8 16:37 vdb-lock -> vdb-lock.2 lrwxrwxrwx 1 builduser builduser 15 Apr 8 16:37 vdb-lock.2 -> vdb-lock.2.11.3 -rwxr-xr-x 1 builduser builduser 88456 Apr 8 16:37 vdb-lock.2.11.3 lrwxrwxrwx 1 builduser builduser 12 Apr 8 16:37 vdb-passwd -> vdb-passwd.2 lrwxrwxrwx 1 builduser builduser 17 Apr 8 16:37 vdb-passwd.2 -> vdb-passwd.2.11.3 -rwxr-xr-x 1 builduser builduser 90128 Apr 8 16:37 vdb-passwd.2.11.3 lrwxrwxrwx 1 builduser builduser 12 Apr 8 16:37 vdb-unlock -> vdb-unlock.2 lrwxrwxrwx 1 builduser builduser 17 Apr 8 16:37 vdb-unlock.2 -> vdb-unlock.2.11.3 -rwxr-xr-x 1 builduser builduser 88472 Apr 8 16:37 vdb-unlock.2.11.3 lrwxrwxrwx 1 builduser builduser 14 Apr 8 16:37 vdb-validate -> vdb-validate.2 lrwxrwxrwx 1 builduser builduser 19 Apr 8 16:37 vdb-validate.2 -> vdb-validate.2.11.3 -rwxr-xr-x 1 builduser builduser 248160 Apr 8 16:37 vdb-validate.2.11.3 cd debian/tmp/usr/bin && \ for bin in *-orig.* ; do \ base=${bin%-orig.*} && \ vbase=$(readlink "$(readlink $base)") && \ vdriver=$(readlink "$vbase") && \ mv -v $bin $base-orig && \ ln -snfv ${vdriver%%.[0-9]*} $vbase || exit $? ; \ done && \ for bin in *[a-z] ; do \ bin2=$(readlink $bin) ; \ bin3=$(readlink "$bin2") ; \ case $bin2 in \ $bin.* ) rm -v $bin2 && mv -v $bin3 $bin || exit $? ;; \ esac ; \ done renamed 'fasterq-dump-orig.2.11.3' -> 'fasterq-dump-orig' 'fasterq-dump.2.11.3' -> 'sratools' renamed 'fastq-dump-orig.2.11.3' -> 'fastq-dump-orig' 'fastq-dump.2.11.3' -> 'sratools' renamed 'prefetch-orig.2.11.3' -> 'prefetch-orig' 'prefetch.2.11.3' -> 'sratools' renamed 'sam-dump-orig.2.11.3' -> 'sam-dump-orig' 'sam-dump.2.11.3' -> 'sratools' renamed 'sra-pileup-orig.2.11.3' -> 'sra-pileup-orig' 'sra-pileup.2.11.3' -> 'sratools' renamed 'srapath-orig.2.11.3' -> 'srapath-orig' 'srapath.2.11.3' -> 'sratools' renamed 'vdb-dump-orig.2.11.3' -> 'vdb-dump-orig' 'vdb-dump.2.11.3' -> 'sratools' removed 'abi-dump.2' renamed 'abi-dump.2.11.3' -> 'abi-dump' removed 'align-cache.2' renamed 'align-cache.2.11.3' -> 'align-cache' removed 'align-info.2' renamed 'align-info.2.11.3' -> 'align-info' removed 'bam-load.2' renamed 'bam-load.2.11.3' -> 'bam-load' removed 'cache-mgr.2' renamed 'cache-mgr.2.11.3' -> 'cache-mgr' removed 'ccextract.2' renamed 'ccextract.2.11.3' -> 'ccextract' removed 'cg-load.2' renamed 'cg-load.2.11.3' -> 'cg-load' removed 'copycat.2' renamed 'copycat.2.11.3' -> 'copycat' removed 'fasterq-dump.2' renamed 'fasterq-dump.2.11.3' -> 'fasterq-dump' removed 'fastq-dump.2' renamed 'fastq-dump.2.11.3' -> 'fastq-dump' removed 'illumina-dump.2' renamed 'illumina-dump.2.11.3' -> 'illumina-dump' removed 'kar.2' renamed 'kar.2.11.3' -> 'kar' removed 'kdbmeta.2' renamed 'kdbmeta.2.11.3' -> 'kdbmeta' removed 'latf-load.2' renamed 'latf-load.2.11.3' -> 'latf-load' removed 'md5cp.2' renamed 'md5cp.2.11.3' -> 'md5cp' removed 'pacbio-load.2' renamed 'pacbio-load.2.11.3' -> 'pacbio-load' removed 'prefetch.2' renamed 'prefetch.2.11.3' -> 'prefetch' removed 'rcexplain.2' renamed 'rcexplain.2.11.3' -> 'rcexplain' removed 'read-filter-redact.2' renamed 'read-filter-redact.2.11.3' -> 'read-filter-redact' removed 'remote-fuser.2' renamed 'remote-fuser.2.11.3' -> 'remote-fuser' removed 'sam-dump.2' renamed 'sam-dump.2.11.3' -> 'sam-dump' removed 'sff-dump.2' renamed 'sff-dump.2.11.3' -> 'sff-dump' removed 'sra-pileup.2' renamed 'sra-pileup.2.11.3' -> 'sra-pileup' removed 'sra-sort.2' renamed 'sra-sort.2.11.3' -> 'sra-sort' removed 'sra-sort-cg.2' renamed 'sra-sort-cg.2.11.3' -> 'sra-sort-cg' removed 'sra-stat.2' renamed 'sra-stat.2.11.3' -> 'sra-stat' removed 'srapath.2' renamed 'srapath.2.11.3' -> 'srapath' removed 'sratools.2' renamed 'sratools.2.11.3' -> 'sratools' removed 'test-sra.2' renamed 'test-sra.2.11.3' -> 'test-sra' removed 'vdb-config.2' renamed 'vdb-config.2.11.3' -> 'vdb-config' removed 'vdb-copy.2' renamed 'vdb-copy.2.11.3' -> 'vdb-copy' removed 'vdb-decrypt.2' renamed 'vdb-decrypt.2.11.3' -> 'vdb-decrypt' removed 'vdb-diff.2' renamed 'vdb-diff.2.11.3' -> 'vdb-diff' removed 'vdb-dump.2' renamed 'vdb-dump.2.11.3' -> 'vdb-dump' removed 'vdb-encrypt.2' renamed 'vdb-encrypt.2.11.3' -> 'vdb-encrypt' removed 'vdb-get.2' renamed 'vdb-get.2.11.3' -> 'vdb-get' removed 'vdb-lock.2' renamed 'vdb-lock.2.11.3' -> 'vdb-lock' removed 'vdb-passwd.2' renamed 'vdb-passwd.2.11.3' -> 'vdb-passwd' removed 'vdb-unlock.2' renamed 'vdb-unlock.2.11.3' -> 'vdb-unlock' removed 'vdb-validate.2' renamed 'vdb-validate.2.11.3' -> 'vdb-validate' dh_install # remove susipcious file which is not executable and conflicts with package magic rm -f debian/*/usr/bin/magic # Formally supply a standard installation ID to satisfy sratools echo '/LIBS/GUID = "806b5c3b-0088-4732-8359-51630950d723"' >debian/sra-toolkit/etc/ncbi/debian.kfg make[1]: Leaving directory '/build/sra-sdk-LzoAU7/sra-sdk-2.11.3+dfsg' dh_installdocs -a -O--no-parallel dh_installchangelogs -a -O--no-parallel dh_installsystemduser -a -O--no-parallel dh_perl -a -O--no-parallel dh_link -a -O--no-parallel dh_strip_nondeterminism -a -O--no-parallel dh_compress -a -O--no-parallel dh_fixperms -a -O--no-parallel dh_missing -a -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/sra-toolkit/usr/bin/cache-mgr debian/sra-toolkit/usr/bin/vdb-encrypt debian/sra-toolkit/usr/bin/prefetch-orig debian/sra-toolkit/usr/bin/srapath-orig debian/sra-toolkit/usr/bin/ccextract debian/sra-toolkit/usr/bin/sra-pileup-orig debian/sra-toolkit/usr/bin/vdb-unlock debian/sra-toolkit/usr/bin/sratools debian/sra-toolkit/usr/bin/vdb-lock debian/sra-toolkit/usr/bin/vdb-get debian/sra-toolkit/usr/bin/vdb-dump-orig debian/sra-toolkit/usr/bin/sra-stat debian/sra-toolkit/usr/bin/illumina-dump debian/sra-toolkit/usr/bin/sff-dump debian/sra-toolkit/usr/bin/fastq-dump-orig debian/sra-toolkit/usr/bin/remote-fuser debian/sra-toolkit/usr/bin/align-cache debian/sra-toolkit/usr/bin/copycat debian/sra-toolkit/usr/bin/test-sra debian/sra-toolkit/usr/bin/sam-dump-orig debian/sra-toolkit/usr/bin/kar debian/sra-toolkit/usr/bin/align-info debian/sra-toolkit/usr/bin/vdb-copy debian/sra-toolkit/usr/bin/cg-load debian/sra-toolkit/usr/bin/sra-sort-cg debian/sra-toolkit/usr/bin/abi-dump debian/sra-toolkit/usr/bin/read-filter-redact debian/sra-toolkit/usr/bin/latf-load debian/sra-toolkit/usr/bin/vdb-validate debian/sra-toolkit/usr/bin/vdb-passwd debian/sra-toolkit/usr/bin/fasterq-dump-orig debian/sra-toolkit/usr/bin/bam-load debian/sra-toolkit/usr/bin/md5cp debian/sra-toolkit/usr/bin/rcexplain debian/sra-toolkit/usr/bin/kdbmeta debian/sra-toolkit/usr/bin/vdb-diff debian/sra-toolkit/usr/bin/pacbio-load debian/sra-toolkit/usr/bin/vdb-decrypt debian/sra-toolkit/usr/bin/sra-sort debian/sra-toolkit/usr/bin/vdb-config were not linked against libzstd.so.1 (they use none of the library's symbols) dh_installdeb -a -O--no-parallel dh_gencontrol -a -O--no-parallel dh_md5sums -a -O--no-parallel dh_builddeb -a -O--no-parallel dpkg-deb: building package 'sra-toolkit' in '../sra-toolkit_2.11.3+dfsg-1_amd64.deb'. dpkg-deb: building package 'sra-toolkit-dbgsym' in '../sra-toolkit-dbgsym_2.11.3+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../sra-sdk_2.11.3+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/sra-sdk-LzoAU7 /tmp/sra-sdk-2.11.3+dfsg-1pv5_je44 I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.GqemSmb9Wd... I: success in 788.2080 seconds md5: sra-toolkit-dbgsym_2.11.3+dfsg-1_amd64.deb: OK md5: sra-toolkit_2.11.3+dfsg-1_amd64.deb: OK sha1: sra-toolkit-dbgsym_2.11.3+dfsg-1_amd64.deb: OK sha1: sra-toolkit_2.11.3+dfsg-1_amd64.deb: OK sha256: sra-toolkit-dbgsym_2.11.3+dfsg-1_amd64.deb: OK sha256: sra-toolkit_2.11.3+dfsg-1_amd64.deb: OK Checksums: OK