Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/s/squizz/squizz_0.99d+dfsg-3_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/squizz-0.99d+dfsg-33plblk_6/squizz_0.99d+dfsg-3_amd64.buildinfo Get source package info: squizz=0.99d+dfsg-3 Source URL: http://snapshot.notset.fr/mr/package/squizz/0.99d+dfsg-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-3 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-7 binutils=2.35-1 binutils-common=2.35-1 binutils-x86-64-linux-gnu=2.35-1 bsdextrautils=2.36-2 bsdutils=1:2.36-2 build-essential=12.8 bzip2=1.0.8-4 coreutils=8.32-3 cpp=4:10.1.0-1 cpp-10=10.2.0-5 dash=0.5.10.2-7 debconf=1.5.74 debhelper=13.2 debianutils=4.11 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.38-5 findutils=4.7.0-1 g++=4:10.1.0-1 g++-10=10.2.0-5 gcc=4:10.1.0-1 gcc-10=10.2.0-5 gcc-10-base=10.2.0-5 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.4-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.58 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libasan6=10.2.0-5 libatomic1=10.2.0-5 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libbinutils=2.35-1 libblkid1=2.36-2 libbz2-1.0=1.0.8-4 libc-bin=2.31-3 libc-dev-bin=2.31-3 libc6=2.31-3 libc6-dev=2.31-3 libcap-ng0=0.7.9-2.2 libcc1-0=10.2.0-5 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.16-1 libcrypt1=1:4.4.16-1 libctf-nobfd0=2.35-1 libctf0=2.35-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.253 libdebhelper-perl=13.2 libdpkg-perl=1.20.5 libelf1=0.180-1+b1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.0-5 libgcc-s1=10.2.0-5 libgcrypt20=1.8.6-2 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libglib2.0-0=2.64.4-1 libgmp10=2:6.2.0+dfsg-6 libgomp1=10.2.0-5 libgpg-error0=1.38-2 libicu67=67.1-3 libisl22=0.22.1-1 libitm1=10.2.0-5 liblsan0=10.2.0-5 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmount1=2.36-2 libmpc3=1.2.0~rc1-1 libmpfr6=4.1.0-3 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libperl5.30=5.30.3-4 libpipeline1=1.5.3-1 libquadmath0=10.2.0-5 libseccomp2=2.4.3-1+b1 libselinux1=3.1-2 libsigsegv2=2.12-2 libsmartcols1=2.36-2 libstdc++-10-dev=10.2.0-5 libstdc++6=10.2.0-5 libsub-override-perl=0.09-2 libsystemd0=246-2 libtinfo6=6.2-1 libtool=2.4.6-14 libtsan0=10.2.0-5 libubsan1=10.2.0-5 libuchardet0=0.0.7-1 libudev1=246-2 libunistring2=0.9.10-4 libuuid1=2.36-2 libxml2=2.9.10+dfsg-5+b1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.7.10-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2-1 ncurses-bin=6.2-1 patch=2.7.6-6 perl=5.30.3-4 perl-base=5.30.3-4 perl-modules-5.30=5.30.3-4 po-debconf=1.0.21 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-3 tar=1.30+dfsg-7 util-linux=2.36-2 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200813T144945Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d squizz=0.99d+dfsg-3 && mkdir -p /build/squizz-46sxeZ && dpkg-source --no-check -x /*.dsc /build/squizz-46sxeZ/squizz-0.99d+dfsg && chown -R builduser:builduser /build/squizz-46sxeZ" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/squizz-46sxeZ/squizz-0.99d+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1597497674" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/squizz-46sxeZ /tmp/squizz-0.99d+dfsg-33plblk_6 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200813T144945Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.rpr0ElLE_T as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.rpr0ElLE_T Reading package lists... Building dependency tree... util-linux is already the newest version (2.36-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200813T144945Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200813T144945Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (571 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4578 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-3) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200813T144945Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.rpr0ElLE_T Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20200813T144945Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1115 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.rpr0ElLE_T I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d squizz=0.99d+dfsg-3 && mkdir -p /build/squizz-46sxeZ && dpkg-source --no-check -x /*.dsc /build/squizz-46sxeZ/squizz-0.99d+dfsg && chown -R builduser:builduser /build/squizz-46sxeZ"' exec /tmp/mmdebstrap.rpr0ElLE_T Reading package lists... NOTICE: 'squizz' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/squizz.git Please use: git clone https://salsa.debian.org/med-team/squizz.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 646 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main squizz 0.99d+dfsg-3 (dsc) [2138 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main squizz 0.99d+dfsg-3 (tar) [638 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main squizz 0.99d+dfsg-3 (diff) [5216 B] Fetched 646 kB in 1s (1129 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'squizz_0.99d+dfsg-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting squizz in /build/squizz-46sxeZ/squizz-0.99d+dfsg dpkg-source: info: unpacking squizz_0.99d+dfsg.orig.tar.xz dpkg-source: info: unpacking squizz_0.99d+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying correct-manpages-section.patch dpkg-source: info: applying disable-swissprot-test.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/squizz-46sxeZ/squizz-0.99d+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1597497674" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.rpr0ElLE_T dpkg-buildpackage: info: source package squizz dpkg-buildpackage: info: source version 0.99d+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:12: installing './compile' configure.ac:3: installing './missing' lib/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for bison... no checking for byacc... no checking for flex... no checking for lex... no checking for pod2man... pod2man checking for pod2html... pod2html checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking for inttypes.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for off_t... yes checking for size_t... yes checking size of size_t... 8 checking for uint64_t... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for strftime... yes checking for localtime_r... yes checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating src/Makefile config.status: creating data/Makefile config.status: creating doc/Makefile config.status: creating test/Makefile config.status: creating lib/config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j4 make[1]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' Making all in . make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' Making all in lib make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/lib' make all-am make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/lib' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.lo sequence.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o align.lo align.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/embl.lo sequence/embl.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/embly.lo sequence/embly.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align.c -fPIC -DPIC -o .libs/align.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.c -fPIC -DPIC -o .libs/sequence.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embly.c -fPIC -DPIC -o sequence/.libs/embly.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embl.c -fPIC -DPIC -o sequence/.libs/embl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align.c -o align.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence.c -o sequence.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embly.c -o sequence/embly.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/embl.c -o sequence/embl.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/embll.lo sequence/embll.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. 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-s "../libbioali.la" "libbioali.la" ) make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/lib' make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/lib' Making all in src make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/src' gcc -DHAVE_CONFIG_H -I. -I../lib -I./../lib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o squizz.o squizz.c gcc -DHAVE_CONFIG_H -I. -I../lib -I./../lib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o format.o format.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o squizz squizz.o format.o ../lib/libbioali.la ../lib/libbioseq.la libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/squizz-46sxeZ/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/squizz squizz.o format.o ../lib/.libs/libbioali.so ../lib/.libs/libbioseq.so make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/src' Making all in data make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/data' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/data' Making all in doc make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/doc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/doc' Making all in test make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/test' make[1]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' dh_auto_test --no-parallel make -j1 check VERBOSE=1 make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' Making check in . make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' Making check in lib make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/lib' make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/lib' Making check in src make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/src' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/src' Making check in data make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/data' Making check in doc make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/doc' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/doc' Making check in test make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/test' make check-TESTS make[4]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/test' make[5]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/test' PASS: squizz.sh PASS: fmtseq.sh PASS: fmtali.sh PASS: convseq.sh PASS: convali.sh PASS: embl.sh PASS: genbank.sh PASS: ig.sh PASS: nbrf.sh PASS: raw.sh PASS: align.sh PASS: clustal.sh PASS: mega.sh PASS: msf.sh PASS: nexusi.sh PASS: phylipi.sh PASS: phylips.sh PASS: stockholm.sh PASS: count.sh ============================================================================ Testsuite summary for squizz 0.99d ============================================================================ # TOTAL: 19 # PASS: 19 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/test' make[4]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/test' make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/test' make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' make[1]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/build/squizz-46sxeZ/squizz-0.99d\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' Making install in . make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' Making install in lib make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/lib' make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/lib' /bin/mkdir -p '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libbioseq.la libbioali.la '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libbioseq.so.0.0.0 /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioseq.so.0.0.0 libtool: install: (cd /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libbioseq.so.0.0.0 libbioseq.so.0 || { rm -f libbioseq.so.0 && ln -s libbioseq.so.0.0.0 libbioseq.so.0; }; }) libtool: install: (cd /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libbioseq.so.0.0.0 libbioseq.so || { rm -f libbioseq.so && ln -s libbioseq.so.0.0.0 libbioseq.so; }; }) libtool: install: /usr/bin/install -c .libs/libbioseq.lai /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioseq.la libtool: install: /usr/bin/install -c .libs/libbioali.so.0.0.0 /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioali.so.0.0.0 libtool: install: (cd /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libbioali.so.0.0.0 libbioali.so.0 || { rm -f libbioali.so.0 && ln -s libbioali.so.0.0.0 libbioali.so.0; }; }) libtool: install: (cd /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libbioali.so.0.0.0 libbioali.so || { rm -f libbioali.so && ln -s libbioali.so.0.0.0 libbioali.so; }; }) libtool: install: /usr/bin/install -c .libs/libbioali.lai /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioali.la libtool: install: /usr/bin/install -c .libs/libbioseq.a /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioseq.a libtool: install: chmod 644 /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioseq.a libtool: install: ranlib /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioseq.a libtool: install: /usr/bin/install -c .libs/libbioali.a /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioali.a libtool: install: chmod 644 /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioali.a libtool: install: ranlib /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbioali.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz' /bin/mkdir -p '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' /usr/bin/install -c -m 644 align/clustal.h align/fasta2.h align/mega.h align/msf.h align/nexusi.h align/phylipi.h align/phylips.h align/stock.h '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' /bin/mkdir -p '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' /usr/bin/install -c -m 644 sequence/embl.h sequence/fasta.h sequence/genbank.h sequence/gcg.h sequence/gde.h sequence/ig.h sequence/nbrf.h sequence/codata.h sequence/raw.h sequence/sprot.h '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' /usr/bin/install -c -m 644 sequence.h align.h '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/.' make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/lib' make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/lib' Making install in src make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/src' make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/src' /bin/mkdir -p '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c squizz '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/bin' libtool: warning: '../lib/libbioali.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: warning: '../lib/libbioseq.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/squizz /build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/bin/squizz make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/src' make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/src' Making install in data make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/data' make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/data' make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/data' Making install in doc make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/doc' make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/doc' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' /usr/bin/install -c -m 644 seqfmt.html alifmt.html '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' /bin/mkdir -p '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'squizz.man' '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1/squizz.1' /bin/mkdir -p '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5' /usr/bin/install -c -m 644 'seqfmt.man' '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5/seqfmt.5' /usr/bin/install -c -m 644 'alifmt.man' '/build/squizz-46sxeZ/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5/alifmt.5' make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/doc' make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/doc' Making install in test make[2]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/test' make[3]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/test' make[2]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg/test' make[1]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a debian/rules override_dh_missing make[1]: Entering directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' # Remove un-needed html and la files find debian/tmp -name '*.la' | xargs rm -rf find debian/tmp -name '*.html' | xargs rm -rf dh_missing make[1]: Leaving directory '/build/squizz-46sxeZ/squizz-0.99d+dfsg' dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dpkg-shlibdeps: warning: symbol fasta_print used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol parse_stradd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_free used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_type used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol fastay_check used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol gcg_crc used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_fixnam used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol fastay_parse used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol text_strupd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_new used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libsquizz-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'squizz' in '../squizz_0.99d+dfsg-3_amd64.deb'. dpkg-deb: building package 'libsquizz' in '../libsquizz_0.99d+dfsg-3_amd64.deb'. dpkg-deb: building package 'libsquizz-dev' in '../libsquizz-dev_0.99d+dfsg-3_amd64.deb'. dpkg-deb: building package 'squizz-dbgsym' in '../squizz-dbgsym_0.99d+dfsg-3_amd64.deb'. dpkg-deb: building package 'libsquizz-dbgsym' in '../libsquizz-dbgsym_0.99d+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../squizz_0.99d+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/squizz-46sxeZ /tmp/squizz-0.99d+dfsg-33plblk_6 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.rpr0ElLE_T... I: success in 433.4176 seconds md5: libsquizz-dbgsym_0.99d+dfsg-3_amd64.deb: OK md5: libsquizz-dev_0.99d+dfsg-3_amd64.deb: OK md5: libsquizz_0.99d+dfsg-3_amd64.deb: OK md5: squizz-dbgsym_0.99d+dfsg-3_amd64.deb: OK md5: squizz_0.99d+dfsg-3_amd64.deb: OK sha1: libsquizz-dbgsym_0.99d+dfsg-3_amd64.deb: OK sha1: libsquizz-dev_0.99d+dfsg-3_amd64.deb: OK sha1: libsquizz_0.99d+dfsg-3_amd64.deb: OK sha1: squizz-dbgsym_0.99d+dfsg-3_amd64.deb: OK sha1: squizz_0.99d+dfsg-3_amd64.deb: OK sha256: libsquizz-dbgsym_0.99d+dfsg-3_amd64.deb: OK sha256: libsquizz-dev_0.99d+dfsg-3_amd64.deb: OK sha256: libsquizz_0.99d+dfsg-3_amd64.deb: OK sha256: squizz-dbgsym_0.99d+dfsg-3_amd64.deb: OK sha256: squizz_0.99d+dfsg-3_amd64.deb: OK Checksums: OK