Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/s/spoa/spoa_4.0.7+ds-1+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/spoa-4.0.7+ds-1+b189e4f50i/spoa_4.0.7+ds-1+b1_amd64.buildinfo Get source package info: spoa=4.0.7+ds-1 Source URL: http://snapshot.notset.fr/mr/package/spoa/4.0.7+ds-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 apt=2.1.18 autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-6 bsdutils=1:2.36.1-6 build-essential=12.9 bzip2=1.0.8-4 cmake=3.18.4-1+b1 cmake-data=3.18.4-1 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 d-shlibs=0.98 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.1 debian-archive-keyring=2019.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.10.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210118-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-3 gettext-base=0.21-3 googletest=1.10.0.20201025-1.1 gpgv=2.2.20-1 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libapt-pkg6.0=2.1.18 libarchive-zip-perl=1.68-1 libarchive13=3.4.3-2 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libbioparser-dev=3.0.12-1 libblkid1=2.36.1-6 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcereal-dev=1.3.0+dfsg-1 libcom-err2=1.45.6-1 libcpu-features-dev=0.6.0-3 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libcurl4=7.74.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.256 libdebhelper-perl=13.3.1 libdpkg-perl=1.20.7.1 libelf1=0.182-3 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.10.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-5 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libgtest-dev=1.10.0.20201025-1.1 libhogweed6=3.6-2 libicu67=67.1-6 libidn2-0=2.3.0-5 libisl23=0.23-1 libitm1=10.2.1-6 libjsoncpp24=1.9.4-4 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libldap-2.4-2=2.4.57+dfsg-1 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-6 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libprocps8=2:3.3.16-5 libpsl5=0.21.0-1.1 libquadmath0=10.2.1-6 librhash0=1.4.1-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsemanage-common=3.1-1 libsemanage1=3.1-1+b2 libsepol1=3.1-1 libsigsegv2=2.12-3 libsimde-dev=0.7.2-3 libsmartcols1=2.36.1-6 libssh2-1=1.9.0-2 libssl1.1=1.1.1i-2 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.2-5 libtasn1-6=4.16.0-2 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.2-5 libunistring2=0.9.10-4 libuuid1=2.36.1-6 libuv1=1.40.0-1 libxml2=2.9.10+dfsg-6.3+b1 libxxhash0=0.8.0-2 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.9-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 passwd=1:4.8.1-1 patch=2.7.6-7 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 po-debconf=1.0.21+nmu1 procps=2:3.3.16-5 rapidjson-dev=1.1.0+dfsg2-7 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 util-linux=2.36.1-6 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210127T084213Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d spoa=4.0.7+ds-1 && mkdir -p /build/spoa-SoAlkU && dpkg-source --no-check -x /*.dsc /build/spoa-SoAlkU/spoa-4.0.7+ds && cd /build/spoa-SoAlkU/spoa-4.0.7+ds && { printf '%s' 'spoa (4.0.7+ds-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild using libsimde-dev 0.7.2-3 -- all / amd64 / i386 Build Daemon (x86-conova-01) Wed, 27 Jan 2021 10:47:48 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/spoa-SoAlkU" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/spoa-SoAlkU/spoa-4.0.7+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1611744468" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/spoa-SoAlkU /tmp/spoa-4.0.7+ds-1+b189e4f50i bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210127T084213Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.hAaDdginKI as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.hAaDdginKI Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210127T084213Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210127T084213Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1120 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4661 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210127T084213Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.hAaDdginKI Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210127T084213Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1136 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.hAaDdginKI I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d spoa=4.0.7+ds-1 && mkdir -p /build/spoa-SoAlkU && dpkg-source --no-check -x /*.dsc /build/spoa-SoAlkU/spoa-4.0.7+ds && cd /build/spoa-SoAlkU/spoa-4.0.7+ds && { printf '%s' 'spoa (4.0.7+ds-1+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild using libsimde-dev 0.7.2-3 -- all / amd64 / i386 Build Daemon (x86-conova-01) Wed, 27 Jan 2021 10:47:48 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/spoa-SoAlkU"' exec /tmp/mmdebstrap.hAaDdginKI Reading package lists... NOTICE: 'spoa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/spoa.git Please use: git clone https://salsa.debian.org/med-team/spoa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 324 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main spoa 4.0.7+ds-1 (dsc) [2160 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main spoa 4.0.7+ds-1 (tar) [314 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main spoa 4.0.7+ds-1 (diff) [8088 B] Fetched 324 kB in 0s (1114 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'spoa_4.0.7+ds-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting spoa in /build/spoa-SoAlkU/spoa-4.0.7+ds dpkg-source: info: unpacking spoa_4.0.7+ds.orig.tar.xz dpkg-source: info: unpacking spoa_4.0.7+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deb_cpu_features dpkg-source: info: applying fix-ftbfs-gcc-10.patch dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying shared_and_static.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/spoa-SoAlkU/spoa-4.0.7+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1611744468" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.hAaDdginKI dpkg-buildpackage: info: source package spoa dpkg-buildpackage: info: source version 4.0.7+ds-1+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary-arch dh binary-arch --no-parallel dh_update_autotools_config -a -O--no-parallel dh_autoreconf -a -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/cmake/CpuFeatures -Dspoa_generate_dispatch=ON cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/x86_64-linux-gnu/cmake/CpuFeatures -Dspoa_generate_dispatch=ON .. -- The CXX compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at vendor/cereal/CMakeLists.txt:2 (project): Policy CMP0048 is not set: project() command manages VERSION variables. Run "cmake --help-policy CMP0048" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The following variable(s) would be set to empty: PROJECT_VERSION PROJECT_VERSION_MAJOR PROJECT_VERSION_MINOR PROJECT_VERSION_PATCH This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Could NOT find Boost (missing: Boost_INCLUDE_DIR serialization) -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Found GTest: /usr/lib/x86_64-linux-gnu/libgtest.a -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds' dh_auto_build -a -O--no-parallel cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/spoa-SoAlkU/spoa-4.0.7+ds -B/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/depend make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' cd /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/DependInfo.cmake --color= Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/DependInfo.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/depend.internal". Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse2.dir/depend.internal". Scanning dependencies of target spoa_sse2 make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_sse2.dir/build.make CMakeFiles/spoa_sse2.dir/build make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 0%] Building CXX object CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -msse2 -std=c++11 -o CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_dispatch.cpp In file included from /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_dispatch.cpp:3: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:315:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 315 | std::unique_ptr<__mxxxi[]> sequence_profile_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:320:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 320 | std::unique_ptr<__mxxxi[]> M_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:328:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 328 | std::unique_ptr<__mxxxi[]> masks_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:332:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 332 | std::unique_ptr<__mxxxi[]> penalties_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Realloc(uint64_t, uint64_t, uint8_t)’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:432:65: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 432 | pimpl_->sequence_profile_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:446:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 446 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:462:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 462 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:480:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 480 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:491:54: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 491 | pimpl_->masks_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:501:58: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 501 | pimpl_->penalties_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE2]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE2]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 0%] Built target spoa_sse2 make -f CMakeFiles/spoa_sse4.1.dir/build.make CMakeFiles/spoa_sse4.1.dir/depend make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' cd /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse4.1.dir/DependInfo.cmake --color= Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse4.1.dir/DependInfo.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse4.1.dir/depend.internal". Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_sse4.1.dir/depend.internal". Scanning dependencies of target spoa_sse4.1 make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_sse4.1.dir/build.make CMakeFiles/spoa_sse4.1.dir/build make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 0%] Building CXX object CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -msse4.1 -std=c++11 -o CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_dispatch.cpp In file included from /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_dispatch.cpp:3: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:315:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 315 | std::unique_ptr<__mxxxi[]> sequence_profile_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:320:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 320 | std::unique_ptr<__mxxxi[]> M_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:328:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 328 | std::unique_ptr<__mxxxi[]> masks_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:332:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 332 | std::unique_ptr<__mxxxi[]> penalties_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Realloc(uint64_t, uint64_t, uint8_t)’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:432:65: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 432 | pimpl_->sequence_profile_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:446:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 446 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:462:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 462 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:480:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 480 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:491:54: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 491 | pimpl_->masks_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:501:58: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 501 | pimpl_->penalties_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE4_1]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE4_1]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 0%] Built target spoa_sse4.1 make -f CMakeFiles/spoa_avx2.dir/build.make CMakeFiles/spoa_avx2.dir/depend make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' cd /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_avx2.dir/DependInfo.cmake --color= Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_avx2.dir/DependInfo.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_avx2.dir/depend.internal". Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_avx2.dir/depend.internal". Scanning dependencies of target spoa_avx2 make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_avx2.dir/build.make CMakeFiles/spoa_avx2.dir/build make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 0%] Building CXX object CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -mavx2 -std=c++11 -o CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_dispatch.cpp In file included from /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_dispatch.cpp:3: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:315:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m256i []’} [-Wignored-attributes] 315 | std::unique_ptr<__mxxxi[]> sequence_profile_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:320:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m256i []’} [-Wignored-attributes] 320 | std::unique_ptr<__mxxxi[]> M_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:328:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m256i []’} [-Wignored-attributes] 328 | std::unique_ptr<__mxxxi[]> masks_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:332:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m256i []’} [-Wignored-attributes] 332 | std::unique_ptr<__mxxxi[]> penalties_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Realloc(uint64_t, uint64_t, uint8_t)’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:432:65: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m256i []’} [-Wignored-attributes] 432 | pimpl_->sequence_profile_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:446:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m256i []’} [-Wignored-attributes] 446 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:462:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m256i []’} [-Wignored-attributes] 462 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:480:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m256i []’} [-Wignored-attributes] 480 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:491:54: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m256i []’} [-Wignored-attributes] 491 | pimpl_->masks_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:501:58: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m256i []’} [-Wignored-attributes] 501 | pimpl_->penalties_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In instantiation of ‘T* spoa::AllocateAlignedMemory(T**, std::size_t, std::size_t) [with spoa::Architecture A = spoa::Architecture::kAVX2; T = __vector(4) long int; std::size_t = long unsigned int]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:427:56: required from ‘void spoa::SimdAlignmentEngine::Realloc(uint64_t, uint64_t, uint8_t) [with spoa::Architecture A = spoa::Architecture::kAVX2; uint64_t = long unsigned int; uint8_t = unsigned char]’ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_dispatch.cpp:15:16: required from here /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:54:14: warning: ‘new’ of type ‘__vector(4) long int’ with extended alignment 32 [-Waligned-new=] 54 | *storage = new T[size + alignment - 1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:54:14: note: uses ‘void* operator new [](std::size_t)’, which does not have an alignment parameter /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:54:14: note: use ‘-faligned-new’ to enable C++17 over-aligned new support /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kAVX2]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kAVX2]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 0%] Built target spoa_avx2 make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' cd /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake --color= Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/depend.internal". Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa.dir/depend.internal". Scanning dependencies of target spoa make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 0%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -Dspoa_EXPORTS -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/usr/include/cpu_features -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/src/alignment_engine.cpp [ 0%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -Dspoa_EXPORTS -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/usr/include/cpu_features -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/src/graph.cpp [ 16%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -Dspoa_EXPORTS -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/usr/include/cpu_features -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/src/sisd_alignment_engine.cpp /build/spoa-SoAlkU/spoa-4.0.7+ds/src/sisd_alignment_engine.cpp: In member function ‘void spoa::SisdAlignmentEngine::Initialize(const char*, uint32_t, const spoa::Graph&)’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/sisd_alignment_engine.cpp:156:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | } | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/sisd_alignment_engine.cpp:157:5: note: here 157 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/sisd_alignment_engine.cpp:173:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 173 | } | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/sisd_alignment_engine.cpp:174:5: note: here 174 | case AlignmentSubtype::kLinear: | ^~~~ [ 16%] Building CXX object CMakeFiles/spoa.dir/src/dispatcher.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -Dspoa_EXPORTS -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/usr/include/cpu_features -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -fPIC -std=c++11 -o CMakeFiles/spoa.dir/src/dispatcher.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/src/dispatcher.cpp In file included from /build/spoa-SoAlkU/spoa-4.0.7+ds/src/dispatcher.cpp:3: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:315:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 315 | std::unique_ptr<__mxxxi[]> sequence_profile_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:320:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 320 | std::unique_ptr<__mxxxi[]> M_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:328:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 328 | std::unique_ptr<__mxxxi[]> masks_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:332:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 332 | std::unique_ptr<__mxxxi[]> penalties_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Realloc(uint64_t, uint64_t, uint8_t)’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:432:65: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 432 | pimpl_->sequence_profile_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:446:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 446 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:462:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 462 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:480:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 480 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:491:54: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 491 | pimpl_->masks_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:501:58: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 501 | pimpl_->penalties_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kAVX2]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kAVX2]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE4_1]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE4_1]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE2]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE2]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ [ 33%] Linking CXX shared library lib/libspoa.so /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/dispatcher.cpp.o -lcpu_features /usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 33%] Built target spoa make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' cd /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_test.dir/DependInfo.cmake --color= Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_test.dir/DependInfo.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_test.dir/depend.internal". Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_test.dir/depend.internal". Scanning dependencies of target spoa_test make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 50%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_DATA_PATH=\"/build/spoa-SoAlkU/spoa-4.0.7+ds/test/data/sample.fastq.gz\" -DUSE_SIMDE -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/usr/include/cpu_features -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/test/spoa_test.cpp [ 50%] Linking CXX executable bin/spoa_test /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/lib lib/libspoa.so.7.0.0 -lz -lpthread /usr/lib/x86_64-linux-gnu/libgtest_main.a -lcpu_features /usr/lib/x86_64-linux-gnu/libgtest.a -lpthread make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 50%] Built target spoa_test make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/depend make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' cd /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_exe.dir/DependInfo.cmake --color= Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_exe.dir/DependInfo.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_exe.dir/depend.internal". Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_exe.dir/depend.internal". Scanning dependencies of target spoa_exe make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/build make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 50%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_VERSION=\"v4.0.7\" -DUSE_SIMDE -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/usr/include/cpu_features -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/src/main.cpp [ 66%] Linking CXX executable bin/spoa /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/lib: lib/libspoa.so.7.0.0 -lz -lcpu_features make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 66%] Built target spoa_exe make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' cd /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_static.dir/DependInfo.cmake --color= Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_static.dir/DependInfo.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_static.dir/depend.internal". Dependee "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles/spoa_static.dir/depend.internal". Scanning dependencies of target spoa_static make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build make[3]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [ 83%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/usr/include/cpu_features -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/src/alignment_engine.cpp [ 83%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/usr/include/cpu_features -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/src/graph.cpp [100%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/usr/include/cpu_features -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/src/sisd_alignment_engine.cpp /build/spoa-SoAlkU/spoa-4.0.7+ds/src/sisd_alignment_engine.cpp: In member function ‘void spoa::SisdAlignmentEngine::Initialize(const char*, uint32_t, const spoa::Graph&)’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/sisd_alignment_engine.cpp:156:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | } | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/sisd_alignment_engine.cpp:157:5: note: here 157 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/sisd_alignment_engine.cpp:173:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 173 | } | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/sisd_alignment_engine.cpp:174:5: note: here 174 | case AlignmentSubtype::kLinear: | ^~~~ [100%] Building CXX object CMakeFiles/spoa_static.dir/src/dispatcher.cpp.o /usr/bin/c++ -DGENERATE_DISPATCH -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DUSE_SIMDE -I/build/spoa-SoAlkU/spoa-4.0.7+ds/include -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/simde -I/usr/include/cpu_features -I/build/spoa-SoAlkU/spoa-4.0.7+ds/src -I/build/spoa-SoAlkU/spoa-4.0.7+ds/vendor/cereal/include -g -O2 -ffile-prefix-map=/build/spoa-SoAlkU/spoa-4.0.7+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++11 -o CMakeFiles/spoa_static.dir/src/dispatcher.cpp.o -c /build/spoa-SoAlkU/spoa-4.0.7+ds/src/dispatcher.cpp In file included from /build/spoa-SoAlkU/spoa-4.0.7+ds/src/dispatcher.cpp:3: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:315:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 315 | std::unique_ptr<__mxxxi[]> sequence_profile_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:320:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 320 | std::unique_ptr<__mxxxi[]> M_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:328:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 328 | std::unique_ptr<__mxxxi[]> masks_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:332:28: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 332 | std::unique_ptr<__mxxxi[]> penalties_storage; | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Realloc(uint64_t, uint64_t, uint8_t)’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:432:65: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 432 | pimpl_->sequence_profile_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:446:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 446 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:462:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 462 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:480:52: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 480 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:491:54: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 491 | pimpl_->masks_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:501:58: warning: ignoring attributes on template argument ‘spoa::__mxxxi []’ {aka ‘__m128i []’} [-Wignored-attributes] 501 | pimpl_->penalties_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kAVX2]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kAVX2]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE4_1]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE4_1]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE2]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp: In member function ‘void spoa::SimdAlignmentEngine::Initialize(const char*, const spoa::Graph&, uint64_t, uint64_t, uint64_t) [with T = spoa::InstructionSet; spoa::Architecture A = spoa::Architecture::kSSE2]’: /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:557:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 557 | for (std::uint32_t i = 1; i < matrix_height; ++i) { | ^~~ /build/spoa-SoAlkU/spoa-4.0.7+ds/src/simd_alignment_engine_implementation.hpp:566:5: note: here 566 | case AlignmentSubtype::kAffine: | ^~~~ [100%] Linking CXX static library lib/libspoa_static.a /usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/dispatcher.cpp.o /usr/bin/ranlib lib/libspoa_static.a make[3]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' [100%] Built target spoa_static make[2]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds' `find . -name spoa_test` Running main() from /build/googletest-YnT0O3/googletest-1.10.0.20201025/googletest/src/gtest_main.cc [==========] Running 23 tests from 2 test suites. [----------] Global test environment set-up. [----------] 3 tests from SpoaAlignmentTest [ RUN ] SpoaAlignmentTest.TypeError [ OK ] SpoaAlignmentTest.TypeError (0 ms) [ RUN ] SpoaAlignmentTest.EmptyInput [ OK ] SpoaAlignmentTest.EmptyInput (0 ms) [ RUN ] SpoaAlignmentTest.LargeInput [ OK ] SpoaAlignmentTest.LargeInput (0 ms) [----------] 3 tests from SpoaAlignmentTest (0 ms total) [----------] 20 tests from SpoaTest [ RUN ] SpoaTest.Clear [ OK ] SpoaTest.Clear (170 ms) [ RUN ] SpoaTest.Archive [ OK ] SpoaTest.Archive (4 ms) [ RUN ] SpoaTest.Local [ OK ] SpoaTest.Local (129 ms) [ RUN ] SpoaTest.LocalAffine [ OK ] SpoaTest.LocalAffine (177 ms) [ RUN ] SpoaTest.LocalConvex [ OK ] SpoaTest.LocalConvex (190 ms) [ RUN ] SpoaTest.LocalWithQualities [ OK ] SpoaTest.LocalWithQualities (116 ms) [ RUN ] SpoaTest.LocalAffineWithQualities [ OK ] SpoaTest.LocalAffineWithQualities (115 ms) [ RUN ] SpoaTest.LocalConvexWithQualities [ OK ] SpoaTest.LocalConvexWithQualities (179 ms) [ RUN ] SpoaTest.Global [ OK ] SpoaTest.Global (77 ms) [ RUN ] SpoaTest.GlobalAffine [ OK ] SpoaTest.GlobalAffine (107 ms) [ RUN ] SpoaTest.GlobalConvex [ OK ] SpoaTest.GlobalConvex (144 ms) [ RUN ] SpoaTest.GlobalWithQualities [ OK ] SpoaTest.GlobalWithQualities (91 ms) [ RUN ] SpoaTest.GlobalAffineWithQualities [ OK ] SpoaTest.GlobalAffineWithQualities (165 ms) [ RUN ] SpoaTest.GlobalConvexWithQualities [ OK ] SpoaTest.GlobalConvexWithQualities (200 ms) [ RUN ] SpoaTest.SemiGlobal [ OK ] SpoaTest.SemiGlobal (80 ms) [ RUN ] SpoaTest.SemiGlobalAffine [ OK ] SpoaTest.SemiGlobalAffine (102 ms) [ RUN ] SpoaTest.SemiGlobalConvex [ OK ] SpoaTest.SemiGlobalConvex (160 ms) [ RUN ] SpoaTest.SemiGlobalWithQualities [ OK ] SpoaTest.SemiGlobalWithQualities (107 ms) [ RUN ] SpoaTest.SemiGlobalAffineWithQualities [ OK ] SpoaTest.SemiGlobalAffineWithQualities (127 ms) [ RUN ] SpoaTest.SemiGlobalConvexWithQualities [ OK ] SpoaTest.SemiGlobalConvexWithQualities (252 ms) [----------] 20 tests from SpoaTest (2692 ms total) [----------] Global test environment tear-down [==========] 23 tests from 2 test suites ran. (2692 ms total) [ PASSED ] 23 tests. `find . -name spoa | grep bin` test/data/sample.fastq.gz >Consensus LN:i:495 AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG make[1]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--no-parallel dh_prep -a -O--no-parallel dh_auto_install -a -O--no-parallel cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/build/spoa-SoAlkU/spoa-4.0.7\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/spoa-SoAlkU/spoa-4.0.7+ds -B/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/spoa-SoAlkU/spoa-4.0.7+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.7.0.0 -- Installing: /build/spoa-SoAlkU/spoa-4.0.7+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so -- Installing: /build/spoa-SoAlkU/spoa-4.0.7+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa_static.a -- Installing: /build/spoa-SoAlkU/spoa-4.0.7+ds/debian/tmp/usr/include/spoa -- Installing: /build/spoa-SoAlkU/spoa-4.0.7+ds/debian/tmp/usr/include/spoa/alignment_engine.hpp -- Installing: /build/spoa-SoAlkU/spoa-4.0.7+ds/debian/tmp/usr/include/spoa/graph.hpp -- Installing: /build/spoa-SoAlkU/spoa-4.0.7+ds/debian/tmp/usr/include/spoa/spoa.hpp -- Installing: /build/spoa-SoAlkU/spoa-4.0.7+ds/debian/tmp/usr/include/spoa/architectures.hpp -- Installing: /build/spoa-SoAlkU/spoa-4.0.7+ds/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/spoa-1.pc -- Installing: /build/spoa-SoAlkU/spoa-4.0.7+ds/debian/tmp/usr/bin/spoa -- Set runtime path of "/build/spoa-SoAlkU/spoa-4.0.7+ds/debian/tmp/usr/bin/spoa" to "" make[1]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/spoa-SoAlkU/spoa-4.0.7+ds' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --exclude-a \ --movedev debian/tmp/usr/include/spoa usr/include \ --movedev debian/tmp/usr/lib/*/pkgconfig usr/lib/x86_64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libspoa-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libspoa7.0.0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so debian/libspoa-dev/usr/lib/x86_64-linux-gnu mv /build/spoa-SoAlkU/spoa-4.0.7+ds/debian/tmp/usr/lib/x86_64-linux-gnu/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/x86_64-linux-gnu PKGDEV=libspoa-dev PKGSHL=libspoa7.0.0 install -d -m 755 debian/libspoa-dev/usr/include mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include install -d -m 755 debian/libspoa-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig debian/libspoa-dev/usr/lib/x86_64-linux-gnu make[1]: Leaving directory '/build/spoa-SoAlkU/spoa-4.0.7+ds' dh_installdocs -a -O--no-parallel dh_installchangelogs -a -O--no-parallel dh_installexamples -a -O--no-parallel dh_installman -a -O--no-parallel dh_installsystemduser -a -O--no-parallel dh_perl -a -O--no-parallel dh_link -a -O--no-parallel dh_strip_nondeterminism -a -O--no-parallel dh_compress -a -O--no-parallel dh_fixperms -a -O--no-parallel dh_missing -a -O--no-parallel dh_dwz -a -a -O--no-parallel dh_strip -a -a -O--no-parallel dh_makeshlibs -a -a -O--no-parallel dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libspoa7.0.0/DEBIAN/symbols doesn't match completely debian/libspoa7.0.0.symbols.amd64 --- debian/libspoa7.0.0.symbols.amd64 (libspoa7.0.0_4.0.7+ds-1+b1_amd64) +++ dpkg-gensymbolsK5iUlE 2021-10-17 08:20:02.582606024 +0000 @@ -1,5 +1,33 @@ libspoa.so.7.0.0 libspoa7.0.0 #MINVER# * Build-Depends-Package: libspoa-dev + CpuFeatures_CloseFile@Base 4.0.7+ds-1+b1 + CpuFeatures_OpenFile@Base 4.0.7+ds-1+b1 + CpuFeatures_ReadFile@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_Back@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_CopyString@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_Front@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_GetAttributeKeyValue@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_HasWord@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_IndexOf@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_IndexOfChar@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_IsEquals@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_KeepFront@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_ParsePositiveNumber@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_PopBack@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_PopFront@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_StartsWith@Base 4.0.7+ds-1+b1 + CpuFeatures_StringView_TrimWhitespace@Base 4.0.7+ds-1+b1 + FillX86BrandString@Base 4.0.7+ds-1+b1 + GetCpuidLeaf@Base 4.0.7+ds-1+b1 + GetX86CacheInfo@Base 4.0.7+ds-1+b1 + GetX86FeaturesEnumName@Base 4.0.7+ds-1+b1 + GetX86FeaturesEnumValue@Base 4.0.7+ds-1+b1 + GetX86Info@Base 4.0.7+ds-1+b1 + GetX86Microarchitecture@Base 4.0.7+ds-1+b1 + GetX86MicroarchitectureName@Base 4.0.7+ds-1+b1 + GetXCR0Eax@Base 4.0.7+ds-1+b1 + StackLineReader_Initialize@Base 4.0.7+ds-1+b1 + StackLineReader_NextLine@Base 4.0.7+ds-1+b1 _ZGVN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5+ds _ZGVZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5+ds _ZN4spoa15AlignmentEngine5AlignERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_5GraphEPi@Base 4.0.5+ds dh_shlibdeps -a -a -O--no-parallel dh_installdeb -a -O--no-parallel dh_gencontrol -a -O--no-parallel dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--no-parallel dh_builddeb -a -O--no-parallel dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.0.7+ds-1+b1_amd64.deb'. dpkg-deb: building package 'spoa' in '../spoa_4.0.7+ds-1+b1_amd64.deb'. dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.0.7+ds-1+b1_amd64.deb'. dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.0.7+ds-1+b1_amd64.deb'. dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.0.7+ds-1+b1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../spoa_4.0.7+ds-1+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/spoa-SoAlkU /tmp/spoa-4.0.7+ds-1+b189e4f50i I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.hAaDdginKI... I: success in 480.6915 seconds md5: libspoa-dev_4.0.7+ds-1+b1_amd64.deb: OK md5: libspoa7.0.0-dbgsym_4.0.7+ds-1+b1_amd64.deb: OK md5: libspoa7.0.0_4.0.7+ds-1+b1_amd64.deb: OK md5: spoa-dbgsym_4.0.7+ds-1+b1_amd64.deb: OK md5: spoa_4.0.7+ds-1+b1_amd64.deb: OK sha1: libspoa-dev_4.0.7+ds-1+b1_amd64.deb: OK sha1: libspoa7.0.0-dbgsym_4.0.7+ds-1+b1_amd64.deb: OK sha1: libspoa7.0.0_4.0.7+ds-1+b1_amd64.deb: OK sha1: spoa-dbgsym_4.0.7+ds-1+b1_amd64.deb: OK sha1: spoa_4.0.7+ds-1+b1_amd64.deb: OK sha256: libspoa-dev_4.0.7+ds-1+b1_amd64.deb: OK sha256: libspoa7.0.0-dbgsym_4.0.7+ds-1+b1_amd64.deb: OK sha256: libspoa7.0.0_4.0.7+ds-1+b1_amd64.deb: OK sha256: spoa-dbgsym_4.0.7+ds-1+b1_amd64.deb: OK sha256: spoa_4.0.7+ds-1+b1_amd64.deb: OK Checksums: OK