Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/s/soapaligner/soapaligner_2.20-5_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/soapaligner-2.20-5m8n6uqk4/soapaligner_2.20-5_amd64.buildinfo Get source package info: soapaligner=2.20-5 Source URL: http://snapshot.notset.fr/mr/package/soapaligner/2.20-5/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-5 bsdutils=1:2.36.1-5 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-3 gettext-base=0.21-3 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblkid1=2.36.1-5 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.45.6-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.256 libdebhelper-perl=13.3.1 libdpkg-perl=1.20.7.1 libelf1=0.182-3 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-6 libisl23=0.23-1 libitm1=10.2.1-6 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-5 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libquadmath0=10.2.1-6 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsigsegv2=2.12-3 libsmartcols1=2.36.1-5 libssl1.1=1.1.1i-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.2-4 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.2-4 libunistring2=0.9.10-4 libuuid1=2.36.1-5 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.5-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 po-debconf=1.0.21+nmu1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 util-linux=2.36.1-5 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210115T144157Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d soapaligner=2.20-5 && mkdir -p /build/soapaligner-kRFw9t && dpkg-source --no-check -x /*.dsc /build/soapaligner-kRFw9t/soapaligner-2.20 && chown -R builduser:builduser /build/soapaligner-kRFw9t" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/soapaligner-kRFw9t/soapaligner-2.20 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1610624145" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/soapaligner-kRFw9t /tmp/soapaligner-2.20-5m8n6uqk4 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210115T144157Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.U2JjquOFcX as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.U2JjquOFcX Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-5). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210115T144157Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210115T144157Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1038 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4661 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210115T144157Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.U2JjquOFcX Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210115T144157Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1119 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.U2JjquOFcX I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d soapaligner=2.20-5 && mkdir -p /build/soapaligner-kRFw9t && dpkg-source --no-check -x /*.dsc /build/soapaligner-kRFw9t/soapaligner-2.20 && chown -R builduser:builduser /build/soapaligner-kRFw9t"' exec /tmp/mmdebstrap.U2JjquOFcX Reading package lists... NOTICE: 'soapaligner' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/soapaligner.git Please use: git clone https://salsa.debian.org/med-team/soapaligner.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 119 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main soapaligner 2.20-5 (dsc) [2039 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main soapaligner 2.20-5 (tar) [111 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main soapaligner 2.20-5 (diff) [6408 B] Fetched 119 kB in 0s (767 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'soapaligner_2.20-5.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting soapaligner in /build/soapaligner-kRFw9t/soapaligner-2.20 dpkg-source: info: unpacking soapaligner_2.20.orig.tar.gz dpkg-source: info: unpacking soapaligner_2.20-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying compiler_options.patch dpkg-source: info: applying linkerror.patch dpkg-source: info: applying UsageDoublette.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc-10.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/soapaligner-kRFw9t/soapaligner-2.20 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1610624145" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.U2JjquOFcX dpkg-buildpackage: info: source package soapaligner dpkg-buildpackage: info: source version 2.20-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean install -d /build/soapaligner-kRFw9t/soapaligner-2.20/debian/.debhelper/generated/_source/home make -j4 clean make[1]: Entering directory '/build/soapaligner-kRFw9t/soapaligner-2.20' rm -f *.o soap make[1]: Leaving directory '/build/soapaligner-kRFw9t/soapaligner-2.20' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/soapaligner.substvars debian/files rm -fr -- debian/soapaligner/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a install -d /build/soapaligner-kRFw9t/soapaligner-2.20/debian/.debhelper/generated/_source/home dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/soapaligner-kRFw9t/soapaligner-2.20' cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.c -o SeqIO.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MiscUtilities.c -o MiscUtilities.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MemManager.c -o MemManager.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" TextConverter.c -o TextConverter.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" r250.c -o r250.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" DNACount.c -o DNACount.o r250.c: In function ‘randlcg’: r250.c:33:27: warning: overflow in conversion from ‘long int’ to ‘int’ changes value from ‘548781581296767’ to ‘724984959’ [-Woverflow] 33 | static int quotient1 = LONG_MAX / 16807L; | ^~~~~~~~ cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" HSP.c -o HSP.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Timing.c -o Timing.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWT.c -o BWT.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" extratools.c -o extratools.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soapio.c -o soapio.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWTAln.c -o BWTAln.o In file included from BWTAln.h:23, from BWTAln.c:1: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from soapio.h:21, from soapio.c:17: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from extratools.c:1: extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Match.c -o Match.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" PairMatch.c -o PairMatch.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" stdaln.c -o stdaln.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" kstring.c -o kstring.o cc -c -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soap.c -o soap.o In file included from Match.c:17: Match.h:130:12: warning: inline function ‘CheckIns’ declared but never defined 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); | ^~~~~~~~ In file included from BWTAln.h:23, from Match.h:23, from Match.c:17: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from PairMatch.c:19: Match.h:132:13: warning: inline function ‘PickupHit’ declared but never defined 132 | inline void PickupHit(ALNSEQ *, const int ,int *, HITTABLE *,const unsigned int *, const unsigned int, unsigned short * ); | ^~~~~~~~~ In file included from BWTAln.h:23, from Match.h:23, from PairMatch.c:19: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from soap.c:24: Match.h:132:13: warning: inline function ‘PickupHit’ declared but never defined 132 | inline void PickupHit(ALNSEQ *, const int ,int *, HITTABLE *,const unsigned int *, const unsigned int, unsigned short * ); | ^~~~~~~~~ Match.h:130:12: warning: inline function ‘CheckIns’ declared but never defined 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); | ^~~~~~~~ In file included from BWTAln.h:23, from Match.h:23, from soap.c:24: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ cc -flto -g -O2 -ffile-prefix-map=/build/soapaligner-kRFw9t/soapaligner-2.20=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.o MiscUtilities.o MemManager.o TextConverter.o r250.o DNACount.o HSP.o Timing.o BWT.o extratools.o soapio.o BWTAln.o Match.o PairMatch.o stdaln.o kstring.o soap.o -o soap -Wl,-flto -Wl,-z,relro -lm -lpthread make[1]: Leaving directory '/build/soapaligner-kRFw9t/soapaligner-2.20' dh_auto_test -a rm -fr -- /tmp/dh-xdg-rundir-xuAbPWbf create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/soapaligner.substvars rm -fr -- debian/.debhelper/generated/soapaligner/ debian/soapaligner/ debian/tmp/ dh_auto_install -a install -d /build/soapaligner-kRFw9t/soapaligner-2.20/debian/soapaligner dh_install -a install -d debian/soapaligner/usr/bin cp --reflink=auto -a ./soap debian/soapaligner/usr/bin/ install -d debian/.debhelper/generated/soapaligner dh_installdocs -a install -d debian/soapaligner/usr/share/doc/soapaligner cp --reflink=auto -a ./NEWS debian/soapaligner/usr/share/doc/soapaligner chmod -R u\+rw,go=rX debian/soapaligner/usr/share/doc install -p -m0644 debian/README.Debian debian/soapaligner/usr/share/doc/soapaligner/README.Debian install -p -m0644 debian/copyright debian/soapaligner/usr/share/doc/soapaligner/copyright dh_installchangelogs -a install -p -m0644 debian/changelog debian/soapaligner/usr/share/doc/soapaligner/changelog.Debian dh_installman -a install -d debian/soapaligner/usr/share/man/man1/ install -p -m0644 ./soap.1 debian/soapaligner/usr/share/man/man1/soap.1 man-recode --to-code UTF-8 --suffix .dh-new debian/soapaligner/usr/share/man/man1/soap.1 mv debian/soapaligner/usr/share/man/man1/soap.1.dh-new debian/soapaligner/usr/share/man/man1/soap.1 chmod 0644 -- debian/soapaligner/usr/share/man/man1/soap.1 dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a cd debian/soapaligner chmod a-x usr/share/doc/soapaligner/NEWS usr/share/doc/soapaligner/changelog.Debian usr/share/man/man1/soap.1 gzip -9nf usr/share/doc/soapaligner/NEWS usr/share/doc/soapaligner/changelog.Debian usr/share/man/man1/soap.1 cd '/build/soapaligner-kRFw9t/soapaligner-2.20' dh_fixperms -a find debian/soapaligner ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/soapaligner/usr/share/doc -type f -a -true -a ! -regex 'debian/soapaligner/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/soapaligner/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a -a dwz -- debian/soapaligner/usr/bin/soap dh_strip -a -a install -d debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/d6 objcopy --only-keep-debug --compress-debug-sections debian/soapaligner/usr/bin/soap debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/d6/fa3676709afffdb19152c09b1a3e7e3880ca4e.debug chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/d6/fa3676709afffdb19152c09b1a3e7e3880ca4e.debug strip --remove-section=.comment --remove-section=.note debian/soapaligner/usr/bin/soap objcopy --add-gnu-debuglink debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/d6/fa3676709afffdb19152c09b1a3e7e3880ca4e.debug debian/soapaligner/usr/bin/soap install -d debian/.debhelper/soapaligner/dbgsym-root/usr/share/doc ln -s soapaligner debian/.debhelper/soapaligner/dbgsym-root/usr/share/doc/soapaligner-dbgsym dh_makeshlibs -a -a rm -f debian/soapaligner/DEBIAN/shlibs dh_shlibdeps -a -a install -d debian/soapaligner/DEBIAN dpkg-shlibdeps -Tdebian/soapaligner.substvars debian/soapaligner/usr/bin/soap dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/soapaligner.substvars echo misc:Pre-Depends= >> debian/soapaligner.substvars install -d debian/.debhelper/soapaligner/dbgsym-root/DEBIAN dpkg-gencontrol -psoapaligner -ldebian/changelog -Tdebian/soapaligner.substvars -Pdebian/.debhelper/soapaligner/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=soapaligner-dbgsym "-DDepends=soapaligner (= \${binary:Version})" "-DDescription=debug symbols for soapaligner" -DBuild-Ids=d6fa3676709afffdb19152c09b1a3e7e3880ca4e -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/DEBIAN/control dpkg-gencontrol -psoapaligner -ldebian/changelog -Tdebian/soapaligner.substvars -Pdebian/soapaligner chmod 0644 -- debian/soapaligner/DEBIAN/control dh_md5sums -a cd debian/soapaligner >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/soapaligner/DEBIAN/md5sums cd debian/.debhelper/soapaligner/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/soapaligner .. dpkg-deb --root-owner-group --build debian/.debhelper/soapaligner/dbgsym-root .. dpkg-deb: building package 'soapaligner-dbgsym' in '../soapaligner-dbgsym_2.20-5_amd64.deb'. dpkg-deb: building package 'soapaligner' in '../soapaligner_2.20-5_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../soapaligner_2.20-5_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/soapaligner-kRFw9t /tmp/soapaligner-2.20-5m8n6uqk4 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.U2JjquOFcX... I: success in 291.9579 seconds md5: soapaligner-dbgsym_2.20-5_amd64.deb: OK md5: soapaligner_2.20-5_amd64.deb: OK sha1: soapaligner-dbgsym_2.20-5_amd64.deb: OK sha1: soapaligner_2.20-5_amd64.deb: OK sha256: soapaligner-dbgsym_2.20-5_amd64.deb: OK sha256: soapaligner_2.20-5_amd64.deb: OK Checksums: OK