Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/s/snap/snap_2013-11-29-11_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/snap-2013-11-29-11prdpjmr6/snap_2013-11-29-11_amd64.buildinfo Get source package info: snap=2013-11-29-11 Source URL: http://snapshot.notset.fr/mr/package/snap/2013-11-29-11/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-3 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 binutils=2.35.1-6 binutils-common=2.35.1-6 binutils-x86-64-linux-gnu=2.35.1-6 bsdextrautils=2.36.1-4 bsdutils=1:2.36.1-4 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.1-3 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-5 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.7.0+git20201010-2 g++=4:10.2.0-1 g++-10=10.2.1-3 gcc=4:10.2.0-1 gcc-10=10.2.1-3 gcc-10-base=10.2.1-3 gettext=0.21-3 gettext-base=0.21-3 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 help2man=1.47.16 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-9 libarchive-zip-perl=1.68-1 libasan6=10.2.1-3 libatomic1=10.2.1-3 libattr1=1:2.4.48-6 libaudit-common=1:3.0-1 libaudit1=1:3.0-1 libbinutils=2.35.1-6 libblkid1=2.36.1-4 libbz2-1.0=1.0.8-4 libc-bin=2.31-7 libc-dev-bin=2.31-7 libc6=2.31-7 libc6-dev=2.31-7 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-3 libcom-err2=1.45.6-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-6 libctf0=2.35.1-6 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.256 libdebhelper-perl=13.3.1 libdpkg-perl=1.20.5 libelf1=0.182-2 libfile-stripnondeterminism-perl=1.9.0-1 libgcc-10-dev=10.2.1-3 libgcc-s1=10.2.1-3 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-3 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-5 libisl23=0.23-1 libitm1=10.2.1-3 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblocale-gettext-perl=1.07-4+b1 liblsan0=10.2.1-3 liblz4-1=1.9.3-1 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-4 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-2 libpam-modules-bin=1.4.0-2 libpam-runtime=1.4.0-2 libpam0g=1.4.0-2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-6 libpipeline1=1.5.3-1 libquadmath0=10.2.1-3 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsigsegv2=2.12-3 libsmartcols1=2.36.1-4 libssl1.1=1.1.1i-1 libstdc++-10-dev=10.2.1-3 libstdc++6=10.2.1-3 libsub-override-perl=0.09-2 libsystemd0=247.2-4 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-14 libtsan0=10.2.1-3 libubsan1=10.2.1-3 libuchardet0=0.0.7-1 libudev1=247.2-4 libunistring2=0.9.10-4 libuuid1=2.36.1-4 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.4-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-6 perl=5.32.0-6 perl-base=5.32.0-6 perl-modules-5.32=5.32.0-6 po-debconf=1.0.21+nmu1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 util-linux=2.36.1-4 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210105T023154Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d snap=2013-11-29-11 && mkdir -p /build/snap-iVqLEe && dpkg-source --no-check -x /*.dsc /build/snap-iVqLEe/snap-2013-11-29 && chown -R builduser:builduser /build/snap-iVqLEe" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/snap-iVqLEe/snap-2013-11-29 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1608643461" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/snap-iVqLEe /tmp/snap-2013-11-29-11prdpjmr6 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210105T023154Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.M67n8Piy7B as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.M67n8Piy7B Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210105T023154Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210105T023154Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (689 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4647 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210105T023154Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.M67n8Piy7B Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210105T023154Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 19s (1185 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.M67n8Piy7B I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d snap=2013-11-29-11 && mkdir -p /build/snap-iVqLEe && dpkg-source --no-check -x /*.dsc /build/snap-iVqLEe/snap-2013-11-29 && chown -R builduser:builduser /build/snap-iVqLEe"' exec /tmp/mmdebstrap.M67n8Piy7B Reading package lists... NOTICE: 'snap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/snap.git Please use: git clone https://salsa.debian.org/med-team/snap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 702 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main snap 2013-11-29-11 (dsc) [2043 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main snap 2013-11-29-11 (tar) [689 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main snap 2013-11-29-11 (diff) [10.9 kB] Fetched 702 kB in 1s (677 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'snap_2013-11-29-11.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting snap in /build/snap-iVqLEe/snap-2013-11-29 dpkg-source: info: unpacking snap_2013-11-29.orig.tar.gz dpkg-source: info: unpacking snap_2013-11-29-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unused-but-set-variable.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying build-with-gcc-6.patch dpkg-source: info: applying use-CC.patch dpkg-source: info: applying replace_itoa_with_broken_indentation.patch dpkg-source: info: applying fix_missing_braces_in_if_statements.patch dpkg-source: info: applying gcc-8.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc-10-multiple_definitions.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/snap-iVqLEe/snap-2013-11-29 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1608643461" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.M67n8Piy7B dpkg-buildpackage: info: source package snap dpkg-buildpackage: info: source version 2013-11-29-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29' touch depend Zoe/depend dh_auto_clean make -j4 clean make[2]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29' rm -f *.o snap fathom forge hmm-info exonpairs cd Zoe; make clean make[3]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29/Zoe' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -f *.o zoe-loop lexica seqedit seqstats twinkle make[3]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29/Zoe' make[2]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29' if [ -f depend.orig ] ; then mv depend.orig depend; fi if [ -f Zoe/depend.orig ] ; then mv Zoe/depend.orig Zoe/depend; fi make[1]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29' dh_auto_build CFLAGS="-g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29' make gcc make[3]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd Zoe; make CFLAGS="-g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security"; make[4]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29/Zoe' make gcc CFLAGS="-g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security" make[5]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29/Zoe' make zoe-loop CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security" make[6]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29/Zoe' cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoe-loop.o zoe-loop.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeAlignment.o zoeAlignment.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeCDS.o zoeCDS.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeCounter.o zoeCounter.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDNA.o zoeDNA.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDistribution.o zoeDistribution.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeDuration.o zoeDuration.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFastaFile.o zoeFastaFile.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeature.o zoeFeature.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeatureFactory.o zoeFeatureFactory.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeFeatureTable.o zoeFeatureTable.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeHMM.o zoeHMM.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeIsochore.o zoeIsochore.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeMath.o zoeMath.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeModel.o zoeModel.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoePhasePref.o zoePhasePref.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeProtein.o zoeProtein.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeScanner.o zoeScanner.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeState.o zoeState.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTools.o zoeTools.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTransition.o zoeTransition.c cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o zoeTrellis.o zoeTrellis.c cc -o zoe-loop -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 zoe-loop.o zoeAlignment.o zoeCDS.o zoeCounter.o zoeDNA.o zoeDistribution.o zoeDuration.o zoeFastaFile.o zoeFeature.o zoeFeatureFactory.o zoeFeatureTable.o zoeHMM.o zoeIsochore.o zoeMath.o zoeModel.o zoePhasePref.o zoeProtein.o zoeScanner.o zoeState.o zoeTools.o zoeTransition.o zoeTrellis.o -lm -Wl,-z,relro -Wl,-z,now make[6]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29/Zoe' make[5]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29/Zoe' make[4]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29/Zoe' make snap CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29' cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o snap.o snap.c cc -o snap -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 snap.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29' make fathom CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29' cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o fathom.o fathom.c cc -o fathom -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 fathom.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29' make forge CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29' cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o forge.o forge.c cc -o forge -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 forge.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29' make hmm-info CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29' cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o hmm-info.o hmm-info.c cc -o hmm-info -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 hmm-info.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29' make exonpairs CFLAGS="-O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security" make[4]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29' cc -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -IZoe -c -o exonpairs.o exonpairs.c cc -o exonpairs -O2 -Wall -Werror -g -O2 -fdebug-prefix-map=/build/snap-iVqLEe/snap-2013-11-29=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 exonpairs.o Zoe/zoeAlignment.o Zoe/zoeCDS.o Zoe/zoeCounter.o Zoe/zoeDNA.o Zoe/zoeDistribution.o Zoe/zoeDuration.o Zoe/zoeFastaFile.o Zoe/zoeFeature.o Zoe/zoeFeatureFactory.o Zoe/zoeFeatureTable.o Zoe/zoeHMM.o Zoe/zoeIsochore.o Zoe/zoeMath.o Zoe/zoeModel.o Zoe/zoePhasePref.o Zoe/zoeProtein.o Zoe/zoeScanner.o Zoe/zoeState.o Zoe/zoeTools.o Zoe/zoeTransition.o Zoe/zoeTrellis.o -lm -Wl,-z,relro -Wl,-z,now make[4]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29' make[3]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29' make[2]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29' make[1]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a dh_installdirs -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/build/snap-iVqLEe/snap-2013-11-29' dh_install # cds-trainer.pl and noncoding-trainer.pl are needing the following Perl modules: # IK.pm, FAlite.pm, DataBrowser.pm # since these are not available in Debian there is no point in installing this script find debian -name cds-trainer.pl -delete find debian -name noncoding-trainer.pl -delete make[1]: Leaving directory '/build/snap-iVqLEe/snap-2013-11-29' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package snap: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package snap: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'snap' in '../snap_2013-11-29-11_amd64.deb'. dpkg-deb: building package 'snap-dbgsym' in '../snap-dbgsym_2013-11-29-11_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../snap_2013-11-29-11_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/snap-iVqLEe /tmp/snap-2013-11-29-11prdpjmr6 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.M67n8Piy7B... I: success in 299.9419 seconds md5: snap-dbgsym_2013-11-29-11_amd64.deb: OK md5: snap_2013-11-29-11_amd64.deb: OK sha1: snap-dbgsym_2013-11-29-11_amd64.deb: OK sha1: snap_2013-11-29-11_amd64.deb: OK sha256: snap-dbgsym_2013-11-29-11_amd64.deb: OK sha256: snap_2013-11-29-11_amd64.deb: OK Checksums: OK