Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/s/snakemake/snakemake_5.24.1-2_all.buildinfo
Use metasnap for getting required timestamps
New buildinfo file: /tmp/snakemake-5.24.1-28g3zwonh/snakemake_5.24.1-2_all.buildinfo
Get source package info: snakemake=5.24.1-2
Source URL: http://snapshot.notset.fr/mr/package/snakemake/5.24.1-2/srcfiles?fileinfo=1
env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11.1 base-passwd=3.5.49 bash=5.1-2+b1 binutils=2.35.2-2 binutils-common=2.35.2-2 binutils-x86-64-linux-gnu=2.35.2-2 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20210119 coinor-cbc=2.10.5+ds1-3 coinor-libcbc3=2.10.5+ds1-3 coinor-libcgl1=0.60.3+repack1-2 coinor-libclp1=1.17.5+repack1-1 coinor-libcoinutils3v5=2.11.4+repack1-1 coinor-libosi1v5=0.108.6+repack1-2 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 cwltool=3.0.20210124104916-3 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.76 debhelper=13.3.4 debianutils=4.11.2 dh-autoreconf=20 dh-python=4.20201102+nmu1 dh-strip-nondeterminism=1.11.0-1 diffutils=1:3.7-5 docutils-common=0.16+dfsg-3 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.14-1 environment-modules=4.7.1-1 file=1:5.39-3 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-font-awesome=5.0.10+really4.7.0~dfsg-4 fonts-glyphicons-halflings=1.009~3.4.1+dfsg-2 fonts-lato=2.0-2.1 fonts-mathjax=2.7.9+dfsg-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 git=1:2.31.0-1 git-man=1:2.31.0-1 graphviz=2.42.2-4+b2 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-4 hicolor-icon-theme=0.17-2 hostname=3.23 imagemagick=8:6.9.11.60+dfsg-1 imagemagick-6-common=8:6.9.11.60+dfsg-1 imagemagick-6.q16=8:6.9.11.60+dfsg-1 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 less=551-2 libacl1=2.2.53-10 libann0=1.1.2+doc-7 libaom0=1.0.0.errata1-3 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.2-2 libblas3=3.9.0-3 libblkid1=2.36.1-7 libboost-dev=1.74.0.3 libboost1.74-dev=1.74.0-9 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libc-ares2=1.17.1-1 libc-bin=2.31-11 libc-dev-bin=2.31-11 libc6=2.31-11 libc6-dev=2.31-11 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcdt5=2.42.2-4+b2 libcgraph6=2.42.2-4+b2 libcmark-gfm-extensions0=0.29.0.gfm.0-6 libcmark-gfm0=0.29.0.gfm.0-6 libcom-err2=1.46.2-1 libcrypt-dev=1:4.4.18-2 libcrypt1=1:4.4.18-2 libctf-nobfd0=2.35.2-2 libctf0=2.35.2-2 libcurl3-gnutls=7.74.0-1.2 libcurl4=7.74.0-1.2 libdatrie1=0.2.13-1 libdav1d4=0.7.1-3 libdb5.3=5.3.28+dfsg1-0.8 libde265-0=1.0.8-1 libdebconfclient0=0.257 libdebhelper-perl=13.3.4 libdeflate0=1.7-1 libdpkg-perl=1.20.7.1 libelf1=0.183-3 liberror-perl=0.17029-1 libexpat1=2.2.10-2 libffi7=3.3-6 libfftw3-double3=3.3.8-2 libfile-stripnondeterminism-perl=1.11.0-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.4+dfsg-1 libfribidi0=1.0.8-2 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-3 libgd3=2.3.0-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgfortran5=10.2.1-6 libglib2.0-0=2.66.8-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.1-3 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-5 libgts-0.7-5=0.7.6+darcs121130-4+b1 libgvc6=2.42.2-4+b2 libgvpr2=2.42.2-4+b2 libharfbuzz0b=2.7.4-1 libheif1=1.11.0-1 libhogweed6=3.7.2-3 libice6=2:1.0.10-1 libicu67=67.1-6 libidn2-0=2.3.0-5 libimagequant0=2.12.2-1.1 libisl23=0.23-1 libitm1=10.2.1-6 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.6-4 libjs-bootstrap=3.4.1+dfsg-2 libjs-d3=3.5.17-4 libjs-es5-shim=4.5.15-1 libjs-highlight.js=9.18.5+dfsg1-1 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-jquery-datatables=1.10.21+dfsg-2 libjs-jquery-selectize.js=0.12.6+dfsg-1.1 libjs-jquery-ui=1.12.1+dfsg-8 libjs-json=0~20190826+~1.0.5-2 libjs-mathjax=2.7.9+dfsg-1 libjs-microplugin.js=0.0.3+dfsg-1.1 libjs-modernizr=2.6.2+ds1-4 libjs-prettify=2015.12.04+dfsg-1.1 libjs-sifter.js=0.6.0+dfsg-1 libjs-sphinxdoc=3.4.3-2 libjs-twitter-bootstrap-datepicker=1.3.1+dfsg1-4.1 libjs-underscore=1.9.1~dfsg-3 libk5crypto3=1.18.3-5 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-5 libkrb5support0=1.18.3-5 liblab-gamut1=2.42.2-4+b2 liblapack3=3.9.0-3 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.57+dfsg-2 liblqr-1-0=0.4.2-2.1 liblsan0=10.2.1-6 libltdl7=2.4.6-15 liblz4-1=1.9.3-1 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmagickcore-6.q16-6=8:6.9.11.60+dfsg-1 libmagickwand-6.q16-6=8:6.9.11.60+dfsg-1 libmd0=1.0.3-3 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnettle8=3.7.2-3 libnghttp2-14=1.43.0-1 libnode72=12.21.0~dfsg-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnuma1=2.0.12-1+b1 libopenjp2-7=2.4.0-3 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-7 libpam-modules-bin=1.4.0-7 libpam-runtime=1.4.0-7 libpam0g=1.4.0-7 libpango-1.0-0=1.46.2-3 libpangocairo-1.0-0=1.46.2-3 libpangoft2-1.0-0=1.46.2-3 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpathplan4=2.42.2-4+b2 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-3 libpipeline1=1.5.3-1 libpixman-1-0=0.40.0-1 libpng16-16=1.6.37-3 libprocps8=2:3.3.17-5 libpsl5=0.21.0-1.2 libpython3-stdlib=3.9.2-3 libpython3.9-minimal=3.9.2-1 libpython3.9-stdlib=3.9.2-1 libquadmath0=10.2.1-6 libreadline8=8.1-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.36.1-7 libsqlite3-0=3.34.1-3 libssh2-1=1.9.0-3 libssl1.1=1.1.1k-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.3-4 libtasn1-6=4.16.0-2 libtcl8.6=8.6.11+dfsg-1 libthai-data=0.1.28-4 libthai0=0.1.28-4 libtiff5=4.2.0-1 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtk8.6=8.6.11-2 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-4 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libuv1=1.40.0-1 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libx11-6=2:1.7.0-2 libx11-data=2:1.7.0-2 libx265-192=3.4-2 libxau6=1:1.0.9-1 libxaw7=2:1.0.13-1.1 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1.1 libxft2=2.3.2-2 libxml2=2.9.10+dfsg-6.3+b1 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxslt1.1=1.1.34-4 libxss1=1:1.2.3-1 libxt6=1:1.2.0-1 libyaml-0-2=0.2.2-1 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.28-1 littler=0.3.12-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.69 make=4.3-4 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 mime-support=3.66 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 node-highlight.js=9.18.5+dfsg1-1 node-html5shiv=3.7.3+dfsg-3 node-normalize.css=8.0.1-3 nodejs=12.21.0~dfsg-3 openssl=1.1.1k-1 pandoc=2.9.2.1-1+b1 pandoc-data=2.9.2.1-1 patch=2.7.6-7 perl=5.32.1-3 perl-base=5.32.1-3 perl-modules-5.32=5.32.1-3 po-debconf=1.0.21+nmu1 procps=2:3.3.17-5 python-babel-localedata=2.8.0+dfsg.1-6 python3=3.9.2-3 python3-alabaster=0.7.8-1.1 python3-appdirs=1.4.4-1 python3-arcp=0.2.1-3 python3-argcomplete=1.8.1-1.5 python3-attr=20.3.0-1 python3-babel=2.8.0+dfsg.1-6 python3-biopython=1.78+dfsg-4 python3-boto3=1.13.14-1 python3-botocore=1.20.0+repack-1 python3-cachecontrol=0.12.6-1 python3-certifi=2020.6.20-1 python3-cffi-backend=1.14.5-1 python3-chardet=4.0.0-1 python3-click=7.1.2-1 python3-colorama=0.4.4-1 python3-coloredlogs=7.3-2 python3-commonmark=0.9.1-3 python3-configargparse=1.2.3-1 python3-dateutil=2.8.1-5 python3-datrie=0.8.2-1+b1 python3-decorator=4.4.2-2 python3-distutils=3.9.2-1 python3-docutils=0.16+dfsg-3 python3-dropbox=10.10.0-1 python3-flask=1.1.2-2 python3-git=3.1.14-1 python3-gitdb=4.0.5-1 python3-humanfriendly=9.1-1 python3-idna=2.10-1 python3-imagesize=1.2.0-2 python3-importlib-metadata=1.6.0-2 python3-iniconfig=1.1.1-1 python3-ipython-genutils=0.2.0-4 python3-isodate=0.6.0-2 python3-itsdangerous=1.1.0-3 python3-jinja2=2.11.3-1 python3-jmespath=0.10.0-1 python3-jsonschema=3.2.0-3 python3-jupyter-core=4.7.1-1 python3-lib2to3=3.9.2-1 python3-lockfile=1:0.12.2-2.2 python3-lxml=4.6.3-1 python3-markupsafe=1.1.1-1+b3 python3-minimal=3.9.2-3 python3-mistune=0.8.4-4 python3-more-itertools=4.2.0-3 python3-msgpack=1.0.0-6+b1 python3-mypy-extensions=0.4.3-2 python3-nbformat=5.1.2-1 python3-networkx=2.5+ds-2 python3-numpy=1:1.19.5-1 python3-packaging=20.9-2 python3-pandas=1.1.5+dfsg-2 python3-pandas-lib=1.1.5+dfsg-2 python3-pil=8.1.2-1 python3-pkg-resources=52.0.0-3 python3-pluggy=0.13.0-6 python3-prov=1.5.2-2 python3-psutil=5.8.0-1 python3-pulp=1.6.0+dfsg1-5 python3-py=1.10.0-1 python3-pydot=1.4.2-1 python3-pygments=2.7.1+dfsg-2 python3-pygraphviz=1.7-2 python3-pyparsing=2.4.7-1 python3-pyrsistent=0.15.5-1+b3 python3-pytest=6.0.2-2 python3-pytools=2021.1-2 python3-ratelimiter=1.2.0.post0-1 python3-rdflib=5.0.0-1.1 python3-rdflib-jsonld=0.5.0-1 python3-recommonmark=0.6.0+ds-1 python3-reportlab=3.5.59-2 python3-reportlab-accel=3.5.59-2 python3-requests=2.25.1+dfsg-2 python3-roman=2.0.0-5 python3-rpy2=3.4.3-1 python3-ruamel.yaml=0.16.12-2 python3-ruamel.yaml.clib=0.2.2-1+b2 python3-s3transfer=0.3.4-1 python3-schema-salad=7.0.20210124093443-1 python3-setuptools=52.0.0-3 python3-shellescape=3.4.1-4 python3-six=1.15.0-2 python3-smmap=4.0.0-1 python3-snowballstemmer=2.1.0-1 python3-sphinx=3.4.3-2 python3-sphinx-argparse=0.2.5-1 python3-sphinx-bootstrap-theme=0.7.1-1 python3-sphinx-rtd-theme=0.5.1+dfsg-1 python3-toml=0.10.1-1 python3-toposort=1.6-1 python3-traitlets=5.0.5-1 python3-typing-extensions=3.7.4.3-1 python3-tz=2021.1-1 python3-tzlocal=2.1-1 python3-urllib3=1.26.2-1 python3-werkzeug=1.0.1+dfsg1-2 python3-wrapt=1.12.1-4+b1 python3-yaml=5.3.1-3+b1 python3-zipp=1.0.0-3 python3.9=3.9.2-1 python3.9-minimal=3.9.2-1 r-base-core=4.0.4-1 r-cran-base64enc=0.1-3-3 r-cran-bh=1.74.0-1 r-cran-commonmark=1.7-2 r-cran-crayon=1.4.0-1 r-cran-digest=0.6.27-1 r-cran-evaluate=0.14-2 r-cran-fastmap=1.1.0-1 r-cran-glue=1.4.2-1 r-cran-highr=0.8+dfsg-2 r-cran-htmltools=0.5.1.1-1 r-cran-httpuv=1.5.5+dfsg-1 r-cran-jsonlite=1.7.2+dfsg-1 r-cran-knitr=1.31+dfsg-1 r-cran-later=1.1.0.1+dfsg-1 r-cran-littler=0.3.12-1 r-cran-magrittr=2.0.1-1 r-cran-markdown=1.1+dfsg-1+b1 r-cran-mime=0.9-1+b1 r-cran-pkgkitten=0.2.1-1 r-cran-promises=1.1.1+dfsg-1 r-cran-r6=2.5.0-1 r-cran-rcpp=1.0.6-1 r-cran-rlang=0.4.10-1 r-cran-rmarkdown=2.6+dfsg-1 r-cran-shiny=1.5.0+dfsg-2 r-cran-sourcetools=0.1.7-3 r-cran-stringi=1.5.3-1 r-cran-stringr=1.4.0-2 r-cran-tinytex=0.29-1 r-cran-withr=2.4.1-1 r-cran-xfun=0.20-1 r-cran-xtable=1:1.8-4-2 r-cran-yaml=2.2.1-1+b1 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 sgml-base=1.30 sphinx-common=3.4.3-2 sphinx-rtd-theme-common=0.5.1+dfsg-1 stress=1.0.4-7 sysvinit-utils=2.96-6 tar=1.34+dfsg-1 tcl8.6=8.6.11+dfsg-1 tzdata=2021a-1 ucf=3.0043 unzip=6.0-26 util-linux=2.36.1-7 x11-common=1:7.7+22 xdg-utils=1.1.3-4 xml-core=0.18+nmu1 xz-utils=5.2.5-2 zip=3.0-12 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main
deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main
deb http://snapshot.notset.fr/archive/debian/20210412T143824Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d snakemake=5.24.1-2 && mkdir -p /build/snakemake-soaDtT && dpkg-source --no-check -x /*.dsc /build/snakemake-soaDtT/snakemake-5.24.1 && chown -R builduser:builduser /build/snakemake-soaDtT" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/snakemake-soaDtT/snakemake-5.24.1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1618240652" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/snakemake-soaDtT /tmp/snakemake-5.24.1-28g3zwonh bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210412T143824Z unstable main
I: automatically chosen mode: root
I: chroot architecture amd64 is equal to the host's architecture
I: automatically chosen format: tar
I: using /tmp/mmdebstrap.Hsc3fTrLf5 as tempdir
I: running apt-get update...
I: downloading packages with apt...
I: extracting archives...
I: installing essential packages...
I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.Hsc3fTrLf5
Reading package lists...
Building dependency tree...
util-linux is already the newest version (2.36.1-7).
The following NEW packages will be installed:
  fakeroot libfakeroot
0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 134 kB of archives.
After this operation, 397 kB of additional disk space will be used.
Get:1 http://snapshot.notset.fr/archive/debian/20210412T143824Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB]
Get:2 http://snapshot.notset.fr/archive/debian/20210412T143824Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 134 kB in 0s (1074 kB/s)
Selecting previously unselected package libfakeroot:amd64.
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(Reading database ... 4663 files and directories currently installed.)
Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ...
Unpacking libfakeroot:amd64 (1.25.3-1.1) ...
Selecting previously unselected package fakeroot.
Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ...
Unpacking fakeroot (1.25.3-1.1) ...
Setting up libfakeroot:amd64 (1.25.3-1.1) ...
Setting up fakeroot (1.25.3-1.1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Processing triggers for libc-bin (2.31-11) ...
I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/
I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main
deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main
deb http://snapshot.notset.fr/archive/debian/20210412T143824Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.Hsc3fTrLf5
Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB]
Hit:2 http://snapshot.notset.fr/archive/debian/20210412T143824Z unstable InRelease
Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources
Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages
Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources
Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages
Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources
Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages
Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB]
Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB]
Fetched 22.6 MB in 22s (1010 kB/s)
Reading package lists...
I: installing remaining packages inside the chroot...
I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.Hsc3fTrLf5
I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d snakemake=5.24.1-2 && mkdir -p /build/snakemake-soaDtT && dpkg-source --no-check -x /*.dsc /build/snakemake-soaDtT/snakemake-5.24.1 && chown -R builduser:builduser /build/snakemake-soaDtT"' exec /tmp/mmdebstrap.Hsc3fTrLf5
Reading package lists...
NOTICE: 'snakemake' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/snakemake.git
Please use:
git clone https://salsa.debian.org/med-team/snakemake.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 6843 kB of source archives.
Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main snakemake 5.24.1-2 (dsc) [2903 B]
Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main snakemake 5.24.1-2 (tar) [6821 kB]
Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main snakemake 5.24.1-2 (diff) [19.6 kB]
Fetched 6843 kB in 6s (1225 kB/s)
Download complete and in download only mode
W: Download is performed unsandboxed as root as file 'snakemake_5.24.1-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied)
dpkg-source: info: extracting snakemake in /build/snakemake-soaDtT/snakemake-5.24.1
dpkg-source: info: unpacking snakemake_5.24.1.orig.tar.gz
dpkg-source: info: unpacking snakemake_5.24.1-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0001-Use-the-inbuild-sphinx.ext.napoleon.patch
dpkg-source: info: applying local_javascript.patch
dpkg-source: info: applying 0003-Compat-fix.patch
dpkg-source: info: applying 0006-restore-bin.patch
dpkg-source: info: applying 0008-remove_sphinx.ext.patch
dpkg-source: info: applying 0009-skip-test-without-google-cloud-sdk.patch
dpkg-source: info: applying python3.patch
dpkg-source: info: applying workaround_sphinx_issue.patch
dpkg-source: info: applying remove_ccbysa_snippets.patch
I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/snakemake-soaDtT/snakemake-5.24.1 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1618240652" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.Hsc3fTrLf5
dpkg-buildpackage: info: source package snakemake
dpkg-buildpackage: info: source version 5.24.1-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
 debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py clean 
running clean
removing '/build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-indep
dh binary-indep --with python3,sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -i -O--buildsystem=pybuild
   dh_autoreconf -i -O--buildsystem=pybuild
   dh_auto_configure -i -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config 
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/snakemake-soaDtT/snakemake-5.24.1'
dh_auto_build
I: pybuild base:232: /usr/bin/python3 setup.py build 
running build
running build_py
creating /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/benchmark.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/resources.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/parser.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/rules.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/script.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/output_index.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/shell.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/jobs.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/cwl.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/gui.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/common.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/wrapper.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/stats.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/persistence.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/__main__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/checkpoints.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/_version.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/io.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/notebook.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/exceptions.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/workflow.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/scheduler.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/utils.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/logging.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/decorators.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/dag.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
creating /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/S3Mocked.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/SFTP.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/HTTP.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/S3.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/webdav.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/gfal.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/NCBI.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/gridftp.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/iRODS.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/dropbox.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/EGA.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/FTP.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/XRootD.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/GS.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
copying snakemake/remote/AzBlob.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote
creating /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report
copying snakemake/report/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report
creating /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching
copying snakemake/caching/hash.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching
copying snakemake/caching/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching
copying snakemake/caching/local.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching
copying snakemake/caching/remote.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching
creating /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment
copying snakemake/deployment/singularity.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment
copying snakemake/deployment/env_modules.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment
copying snakemake/deployment/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment
copying snakemake/deployment/conda.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment
creating /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting
copying snakemake/linting/links.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting
copying snakemake/linting/rules.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting
copying snakemake/linting/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting
copying snakemake/linting/snakefiles.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting
creating /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors
copying snakemake/executors/google_lifesciences_helper.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors
copying snakemake/executors/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors
copying snakemake/executors/google_lifesciences.py -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors
copying snakemake/report.css -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/gui.html -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake
copying snakemake/report/report.html -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report
copying snakemake/report/table.html -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report
copying snakemake/executors/jobscript.sh -> /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors
UPDATING /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/_version.py
set /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/_version.py to '5.24.1'
PATH=/build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/bin:/build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/bin:/build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/sbin:/usr/bin:/sbin:/bin \
PYTHONPATH=/build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build \
	python3 setup.py build_sphinx
running build_sphinx
Running Sphinx v3.4.3
making output directory... done
/build/snakemake-soaDtT/snakemake-5.24.1/docs/conf.py:286: RemovedInSphinx40Warning: The app.add_stylesheet() is deprecated. Please use app.add_css_file() instead.
  app.add_stylesheet('sphinx-argparse.css')
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 37 source files that are out of date
updating environment: [new config] 37 added, 0 changed, 0 removed
reading sources... [  2%] api_reference/internal/modules
reading sources... [  5%] api_reference/internal/snakemake
reading sources... [  8%] api_reference/internal/snakemake.remote
reading sources... [ 10%] api_reference/internal/snakemake.report
reading sources... [ 13%] api_reference/snakemake
reading sources... [ 16%] api_reference/snakemake_utils
reading sources... [ 18%] executing/caching
reading sources... [ 21%] executing/cli
reading sources... [ 24%] executing/cloud
reading sources... [ 27%] executing/cluster
reading sources... [ 29%] executing/interoperability
reading sources... [ 32%] executor_tutorial/azure_aks
reading sources... [ 35%] executor_tutorial/google_lifesciences
reading sources... [ 37%] executor_tutorial/tutorial
reading sources... [ 40%] getting_started/installation
reading sources... [ 43%] index
reading sources... [ 45%] project_info/authors
reading sources... [ 48%] project_info/citations
reading sources... [ 51%] project_info/contributing
reading sources... [ 54%] project_info/faq
reading sources... [ 56%] project_info/history
reading sources... [ 59%] project_info/license
reading sources... [ 62%] project_info/more_resources
reading sources... [ 64%] snakefiles/configuration
reading sources... [ 67%] snakefiles/deployment
reading sources... [ 70%] snakefiles/modularization
reading sources... [ 72%] snakefiles/remote_files
reading sources... [ 75%] snakefiles/reporting
reading sources... [ 78%] snakefiles/rules
reading sources... [ 81%] snakefiles/utils
reading sources... [ 83%] snakefiles/writing_snakefiles
reading sources... [ 86%] tutorial/additional_features
reading sources... [ 89%] tutorial/advanced
reading sources... [ 91%] tutorial/basics
reading sources... [ 94%] tutorial/setup
reading sources... [ 97%] tutorial/short
reading sources... [100%] tutorial/tutorial

WARNING: autodoc: failed to import module 'conda' from module 'snakemake'; the following exception was raised:
No module named 'snakemake.conda'
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/exceptions.py:docstring of snakemake.exceptions.print_exception:6: WARNING: Unexpected indentation.
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.expand:5: WARNING: Unexpected indentation.
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.expand:3: WARNING: Inline emphasis start-string without end-string.
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.expand:7: WARNING: Block quote ends without a blank line; unexpected unindent.
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.expand:8: WARNING: Inline strong start-string without end-string.
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.limit:5: WARNING: Unexpected indentation.
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.limit:3: WARNING: Inline strong start-string without end-string.
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.report:3: WARNING: Inline emphasis start-string without end-string.
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/io.py:docstring of snakemake.io.report:10: WARNING: Unexpected indentation.
WARNING: autodoc: failed to import module 'singularity' from module 'snakemake'; the following exception was raised:
No module named 'snakemake.singularity'
WARNING: autodoc: failed to import module 'FTP' from module 'snakemake.remote'; the following exception was raised:
Traceback (most recent call last):
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/FTP.py", line 20, in <module>
    import ftputil
ModuleNotFoundError: No module named 'ftputil'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module
    return importlib.import_module(modname)
  File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
  File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 790, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/FTP.py", line 23, in <module>
    raise WorkflowError(
snakemake.exceptions.WorkflowError: The Python 3 package 'ftputil' must be installed to use FTP remote() file functionality. No module named 'ftputil'

WARNING: autodoc: failed to import module 'GS' from module 'snakemake.remote'; the following exception was raised:
Traceback (most recent call last):
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/GS.py", line 18, in <module>
    import google.cloud
ModuleNotFoundError: No module named 'google'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module
    return importlib.import_module(modname)
  File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
  File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 790, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/GS.py", line 23, in <module>
    raise WorkflowError(
snakemake.exceptions.WorkflowError: The Python 3 packages 'google-cloud-sdk' and `google-crc32c` need to be installed to use GS remote() file functionality. No module named 'google'

/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/NCBI.py:docstring of snakemake.remote.NCBI.NCBIHelper.fetch_from_ncbi:3: WARNING: Unexpected indentation.
WARNING: autodoc: failed to import module 'S3Mocked' from module 'snakemake.remote'; the following exception was raised:
Traceback (most recent call last):
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/S3Mocked.py", line 27, in <module>
    from moto import mock_s3
ModuleNotFoundError: No module named 'moto'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module
    return importlib.import_module(modname)
  File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
  File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 790, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/S3Mocked.py", line 29, in <module>
    raise WorkflowError(
snakemake.exceptions.WorkflowError: The Python 3 packages 'moto' and boto3' need to be installed to use S3Mocked remote() file functionality. No module named 'moto'

WARNING: autodoc: failed to import module 'SFTP' from module 'snakemake.remote'; the following exception was raised:
Traceback (most recent call last):
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/SFTP.py", line 16, in <module>
    import pysftp
ModuleNotFoundError: No module named 'pysftp'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module
    return importlib.import_module(modname)
  File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
  File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 790, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/SFTP.py", line 18, in <module>
    raise WorkflowError(
snakemake.exceptions.WorkflowError: The Python 3 package 'pysftp' must be installed to use SFTP remote() file functionality. No module named 'pysftp'

WARNING: autodoc: failed to import module 'XRootD' from module 'snakemake.remote'; the following exception was raised:
Traceback (most recent call last):
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/XRootD.py", line 14, in <module>
    from XRootD import client
ModuleNotFoundError: No module named 'XRootD'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module
    return importlib.import_module(modname)
  File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
  File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 790, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/XRootD.py", line 17, in <module>
    raise WorkflowError(
snakemake.exceptions.WorkflowError: The Python 3 package 'XRootD' must be installed to use XRootD remote() file functionality. No module named 'XRootD'

WARNING: autodoc: failed to import module 'gfal' from module 'snakemake.remote'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module
    return importlib.import_module(modname)
  File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
  File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 790, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/gfal.py", line 21, in <module>
    raise WorkflowError(
snakemake.exceptions.WorkflowError: The gfal-* commands need to be available for gfal remote support.

WARNING: autodoc: failed to import module 'gridftp' from module 'snakemake.remote'; the following exception was raised:
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module
    return importlib.import_module(modname)
  File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
  File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 790, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/gridftp.py", line 18, in <module>
    raise WorkflowError(
snakemake.exceptions.WorkflowError: The globus-url-copy command has to be available for gridftp remote support.

WARNING: autodoc: failed to import module 'iRODS' from module 'snakemake.remote'; the following exception was raised:
Traceback (most recent call last):
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/iRODS.py", line 20, in <module>
    from irods.session import iRODSSession
ModuleNotFoundError: No module named 'irods'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module
    return importlib.import_module(modname)
  File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
  File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 790, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/iRODS.py", line 26, in <module>
    raise WorkflowError(
snakemake.exceptions.WorkflowError: The Python 3 package 'python-irodsclient' must be installed to use iRODS remote() file functionality. No module named 'irods'

WARNING: autodoc: failed to import module 'webdav' from module 'snakemake.remote'; the following exception was raised:
Traceback (most recent call last):
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/webdav.py", line 18, in <module>
    import aioeasywebdav
ModuleNotFoundError: No module named 'aioeasywebdav'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/sphinx/ext/autodoc/importer.py", line 67, in import_module
    return importlib.import_module(modname)
  File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1030, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1007, in _find_and_load
  File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 790, in exec_module
  File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
  File "/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/remote/webdav.py", line 21, in <module>
    raise WorkflowError(
snakemake.exceptions.WorkflowError: The Python 3 packages 'aioeasywebdav'  and 'asyncio' must be present to use WebDAV remote() file functionality. No module named 'aioeasywebdav'

/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/__init__.py:docstring of snakemake.snakemake:1: WARNING: duplicate object description of snakemake.snakemake, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils:1: WARNING: duplicate object description of snakemake.utils, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.AlwaysQuotedFormatter:1: WARNING: duplicate object description of snakemake.utils.AlwaysQuotedFormatter, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.QuotedFormatter:1: WARNING: duplicate object description of snakemake.utils.QuotedFormatter, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.R:1: WARNING: duplicate object description of snakemake.utils.R, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.SequenceFormatter:1: WARNING: duplicate object description of snakemake.utils.SequenceFormatter, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.SequenceFormatter.format_element:1: WARNING: duplicate object description of snakemake.utils.SequenceFormatter.format_element, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.argvquote:1: WARNING: duplicate object description of snakemake.utils.argvquote, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.available_cpu_count:1: WARNING: duplicate object description of snakemake.utils.available_cpu_count, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.format:1: WARNING: duplicate object description of snakemake.utils.format, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.linecount:1: WARNING: duplicate object description of snakemake.utils.linecount, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.listfiles:1: WARNING: duplicate object description of snakemake.utils.listfiles, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.makedirs:1: WARNING: duplicate object description of snakemake.utils.makedirs, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.min_version:1: WARNING: duplicate object description of snakemake.utils.min_version, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.os_sync:1: WARNING: duplicate object description of snakemake.utils.os_sync, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.read_job_properties:1: WARNING: duplicate object description of snakemake.utils.read_job_properties, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.report:1: WARNING: duplicate object description of snakemake.utils.report, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.simplify_path:1: WARNING: duplicate object description of snakemake.utils.simplify_path, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.update_config:1: WARNING: duplicate object description of snakemake.utils.update_config, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:docstring of snakemake.utils.validate:1: WARNING: duplicate object description of snakemake.utils.validate, other instance in api_reference/internal/snakemake, use :noindex: for one of them
/build/snakemake-soaDtT/snakemake-5.24.1/docs/executing/cli.rst:115: WARNING: Inline literal start-string without end-string.
/build/snakemake-soaDtT/snakemake-5.24.1/docs/executing/cli.rst:163: WARNING: Unknown directive type "argparse".

.. argparse::
   :module: snakemake
   :func: get_argument_parser
   :prog: snakemake

   All command line options can be printed by calling ``snakemake -h``.
/build/snakemake-soaDtT/snakemake-5.24.1/docs/executor_tutorial/azure_aks.rst:181: WARNING: Unexpected indentation.
/build/snakemake-soaDtT/snakemake-5.24.1/docs/executor_tutorial/azure_aks.rst:29: WARNING: Unknown target name: "python".
/build/snakemake-soaDtT/snakemake-5.24.1/docs/executor_tutorial/azure_aks.rst:30: WARNING: Unknown target name: "snakemake".
/build/snakemake-soaDtT/snakemake-5.24.1/docs/executor_tutorial/google_lifesciences.rst:114: WARNING: Unexpected indentation.
/build/snakemake-soaDtT/snakemake-5.24.1/docs/executor_tutorial/google_lifesciences.rst:115: WARNING: Block quote ends without a blank line; unexpected unindent.
/build/snakemake-soaDtT/snakemake-5.24.1/docs/executor_tutorial/google_lifesciences.rst:229: WARNING: Unexpected indentation.
/build/snakemake-soaDtT/snakemake-5.24.1/docs/executor_tutorial/google_lifesciences.rst:230: WARNING: Block quote ends without a blank line; unexpected unindent.
/build/snakemake-soaDtT/snakemake-5.24.1/docs/executor_tutorial/google_lifesciences.rst:16: WARNING: Unknown target name: "python".
/build/snakemake-soaDtT/snakemake-5.24.1/docs/index.rst:5: WARNING: Duplicate explicit target name: "bioconda".
/build/snakemake-soaDtT/snakemake-5.24.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/build/snakemake-soaDtT/snakemake-5.24.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/build/snakemake-soaDtT/snakemake-5.24.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/build/snakemake-soaDtT/snakemake-5.24.1/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
CHANGELOG.rst:125: WARNING: Bullet list ends without a blank line; unexpected unindent.
CHANGELOG.rst:136: WARNING: Bullet list ends without a blank line; unexpected unindent.
CHANGELOG.rst:148: WARNING: Bullet list ends without a blank line; unexpected unindent.
CHANGELOG.rst:178: WARNING: Bullet list ends without a blank line; unexpected unindent.
CHANGELOG.rst:268: WARNING: Bullet list ends without a blank line; unexpected unindent.
CHANGELOG.rst:277: WARNING: Bullet list ends without a blank line; unexpected unindent.
CHANGELOG.rst:295: WARNING: Bullet list ends without a blank line; unexpected unindent.
CHANGELOG.rst:311: WARNING: Bullet list ends without a blank line; unexpected unindent.
CHANGELOG.rst:340: WARNING: Bullet list ends without a blank line; unexpected unindent.
CHANGELOG.rst:378: WARNING: Bullet list ends without a blank line; unexpected unindent.
/build/snakemake-soaDtT/snakemake-5.24.1/docs/project_info/history.rst:7: WARNING: Duplicate explicit target name: "the docs".
/build/snakemake-soaDtT/snakemake-5.24.1/docs/project_info/history.rst:7: WARNING: Duplicate explicit target name: "the docs".
/build/snakemake-soaDtT/snakemake-5.24.1/docs/snakefiles/modularization.rst:7: WARNING: Duplicate explicit target name: "cwl".
/build/snakemake-soaDtT/snakemake-5.24.1/docs/snakefiles/reporting.rst:5: WARNING: Duplicate explicit target name: "here".
/build/snakemake-soaDtT/snakemake-5.24.1/docs/snakefiles/reporting.rst:5: WARNING: Duplicate explicit target name: "here".
/build/snakemake-soaDtT/snakemake-5.24.1/docs/tutorial/basics.rst:376: WARNING: Mismatch: both interpreted text role prefix and reference suffix.
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  2%] api_reference/internal/modules
writing output... [  5%] api_reference/internal/snakemake
writing output... [  8%] api_reference/internal/snakemake.remote
writing output... [ 10%] api_reference/internal/snakemake.report
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/build/snakemake-soaDtT/snakemake-5.24.1/docs/snakefiles/rules.rst:690: WARNING: undefined label: snakefiles_external-scripts
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writing additional pages... search done
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copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 73 warnings.

The HTML pages are in build/sphinx/html.
make[1]: Leaving directory '/build/snakemake-soaDtT/snakemake-5.24.1'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/snakemake-soaDtT/snakemake-5.24.1'
. /etc/profile.d/modules.sh && PYBUILD_SYSTEM=custom dh_auto_test
I: pybuild pybuild:284: chmod +x /build/snakemake-soaDtT/snakemake-5.24.1/bin/snakemake; cp -r /build/snakemake-soaDtT/snakemake-5.24.1/bin /build/snakemake-soaDtT/snakemake-5.24.1/tests /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build
I: pybuild base:232: python3.9 -m pytest -v tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_ancient'
============================= test session starts ==============================
platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 -- /usr/bin/python3.9
cachedir: .pytest_cache
rootdir: /build/snakemake-soaDtT/snakemake-5.24.1
collecting ... collected 209 items / 36 deselected / 173 selected

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tests/test_kubernetes.py::test_issue1041 SKIPPED                         [  5%]
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tests/tests.py::test_github_issue456 PASSED                              [100%]

=============================== warnings summary ===============================
tests/testapi.py::test_keep_logger
  /usr/lib/python3/dist-packages/ratelimiter.py:127: DeprecationWarning: "@coroutine" decorator is deprecated since Python 3.8, use "async def" instead
    __aexit__ = asyncio.coroutine(__exit__)

tests/testapi.py::test_keep_logger
  /usr/lib/python3/dist-packages/pulp/solvers.py:63: DeprecationWarning: The SafeConfigParser class has been renamed to ConfigParser in Python 3.2. This alias will be removed in future versions. Use ConfigParser directly instead.
    config = configparser.SafeConfigParser({'here':here,

tests/testapi.py::test_keep_logger
  /usr/lib/python3/dist-packages/pulp/pulp.py:102: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working
    from collections import Iterable

tests/tests.py::test_validate
  /build/snakemake-soaDtT/snakemake-5.24.1/snakemake/utils.py:79: DeprecationWarning: The metaschema specified by $schema was not found. Using the latest draft to validate, but this will raise an error in the future.
    Validator = validators.validator_for(schema)

-- Docs: https://docs.pytest.org/en/stable/warnings.html
==== 165 passed, 8 skipped, 36 deselected, 4 warnings in 693.55s (0:11:33) =====
I: pybuild pybuild:310: rm -fr /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/bin /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/tests /build/snakemake-soaDtT/snakemake-5.24.1/tests/test_filegraph/.snakemake/ /build/snakemake-soaDtT/snakemake-5.24.1/tests/linting/*/.snakemake/
make[1]: Leaving directory '/build/snakemake-soaDtT/snakemake-5.24.1'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -i -O--buildsystem=pybuild
   dh_prep -i -O--buildsystem=pybuild
   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/snakemake-soaDtT/snakemake-5.24.1'
dh_auto_install
I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake 
running install
running build
running build_py
UPDATING /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/_version.py
set /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/_version.py to '5.24.1'
running install_lib
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/benchmark.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors/google_lifesciences_helper.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors/jobscript.sh -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors/google_lifesciences.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors/__pycache__/google_lifesciences.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/executors/__pycache__/__init__.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/resources.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/singularity.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/env_modules.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/conda.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/__pycache__/conda.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/__pycache__/singularity.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/deployment/__pycache__/__init__.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/parser.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/rules.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/script.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/gui.html -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/output_index.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/shell.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/jobs.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/report
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/report
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report/report.html -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/report
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report/table.html -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/report
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/cwl.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/gui.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/common.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/wrapper.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/stats.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/persistence.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__main__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/checkpoints.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/report.css -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/_version.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/io.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/notebook.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/exceptions.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/S3Mocked.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/SFTP.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/HTTP.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/S3.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/webdav.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/gfal.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/NCBI.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/gridftp.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/iRODS.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/dropbox.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/EGA.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/FTP.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/XRootD.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/GS.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/remote/AzBlob.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/hash.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/local.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/__pycache__/remote.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/__pycache__/local.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/__pycache__/__init__.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/__pycache__/hash.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/caching/remote.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/workflow.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/scheduler.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/utils.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/logging.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/stats.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/script.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/io.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/resources.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/exceptions.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/shell.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/utils.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/dag.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/__main__.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/output_index.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/_version.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/cwl.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/notebook.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/workflow.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/persistence.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/wrapper.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/checkpoints.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/__init__.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/common.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/rules.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/parser.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/logging.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/jobs.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/__pycache__/scheduler.cpython-39.pyc -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__pycache__
creating /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting/links.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting/rules.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting/__init__.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/linting/snakefiles.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/decorators.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
copying /build/snakemake-soaDtT/snakemake-5.24.1/.pybuild/cpython3_3.9_snakemake/build/snakemake/dag.py -> /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/benchmark.py to benchmark.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors/google_lifesciences_helper.py to google_lifesciences_helper.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/executors/google_lifesciences.py to google_lifesciences.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/resources.py to resources.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/singularity.py to singularity.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/env_modules.py to env_modules.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/deployment/conda.py to conda.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/parser.py to parser.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/rules.py to rules.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/script.py to script.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/output_index.py to output_index.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/shell.py to shell.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/jobs.py to jobs.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/report/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/cwl.py to cwl.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/gui.py to gui.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/common.py to common.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/wrapper.py to wrapper.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/stats.py to stats.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/persistence.py to persistence.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/__main__.py to __main__.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/checkpoints.py to checkpoints.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/_version.py to _version.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/io.py to io.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/notebook.py to notebook.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/exceptions.py to exceptions.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/S3Mocked.py to S3Mocked.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/SFTP.py to SFTP.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/HTTP.py to HTTP.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/S3.py to S3.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/webdav.py to webdav.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/gfal.py to gfal.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/NCBI.py to NCBI.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/gridftp.py to gridftp.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/iRODS.py to iRODS.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/dropbox.py to dropbox.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/EGA.py to EGA.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/FTP.py to FTP.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/XRootD.py to XRootD.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/GS.py to GS.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/remote/AzBlob.py to AzBlob.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/hash.py to hash.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/local.py to local.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/caching/remote.py to remote.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/workflow.py to workflow.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/scheduler.py to scheduler.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/utils.py to utils.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/logging.py to logging.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting/links.py to links.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting/rules.py to rules.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting/__init__.py to __init__.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/linting/snakefiles.py to snakefiles.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/decorators.py to decorators.cpython-39.pyc
byte-compiling /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake/dag.py to dag.cpython-39.pyc
running install_egg_info
running egg_info
creating snakemake.egg-info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
writing manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
Copying snakemake.egg-info to /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/lib/python3.9/dist-packages/snakemake-5.24.1.egg-info
Skipping SOURCES.txt
running install_scripts
Installing snakemake script to /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/bin
Installing snakemake-bash-completion script to /build/snakemake-soaDtT/snakemake-5.24.1/debian/snakemake/usr/bin
find . -name '__pycache__' | xargs rm -Rf
find . -name '*.pyc' | xargs rm -Rf
find debian -name '.gitignore' | xargs rm -Rf
make[1]: Leaving directory '/build/snakemake-soaDtT/snakemake-5.24.1'
   dh_install -i -O--buildsystem=pybuild
   dh_installdocs -i -O--buildsystem=pybuild
   dh_sphinxdoc -i -O--buildsystem=pybuild
   dh_installchangelogs -i -O--buildsystem=pybuild
   dh_installexamples -i -O--buildsystem=pybuild
   dh_installman -i -O--buildsystem=pybuild
   dh_python3 -i -O--buildsystem=pybuild
   dh_installsystemduser -i -O--buildsystem=pybuild
   dh_lintian -i -O--buildsystem=pybuild
   dh_perl -i -O--buildsystem=pybuild
   dh_link -i -O--buildsystem=pybuild
   dh_strip_nondeterminism -i -O--buildsystem=pybuild
   dh_compress -i -O--buildsystem=pybuild
   dh_fixperms -i -O--buildsystem=pybuild
   dh_missing -i -O--buildsystem=pybuild
   dh_installdeb -i -O--buildsystem=pybuild
   dh_gencontrol -i -O--buildsystem=pybuild
dpkg-gencontrol: warning: package snakemake: substitution variable ${sphinxdoc:Built-Using} unused, but is defined
   dh_md5sums -i -O--buildsystem=pybuild
   dh_builddeb -i -O--buildsystem=pybuild
dpkg-deb: building package 'snakemake' in '../snakemake_5.24.1-2_all.deb'.
 dpkg-genbuildinfo --build=all
 dpkg-genchanges --build=all >../snakemake_5.24.1-2_all.changes
dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
I: running special hook: sync-out /build/snakemake-soaDtT /tmp/snakemake-5.24.1-28g3zwonh
I: cleaning package lists and apt cache...
W: deleting files in /tmp: pytest-of-builduser
I: creating tarball...
I: done
I: removing tempdir /tmp/mmdebstrap.Hsc3fTrLf5...
I: success in 1679.5323 seconds
md5: snakemake_5.24.1-2_all.deb: OK
sha1: snakemake_5.24.1-2_all.deb: OK
sha256: snakemake_5.24.1-2_all.deb: OK
Checksums: OK