Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/s/smrtanalysis/smrtanalysis_0~20210112_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/smrtanalysis-0~20210112ce9cett_/smrtanalysis_0~20210112_all.buildinfo Get source package info: smrtanalysis=0~20210112 Source URL: http://snapshot.notset.fr/mr/package/smrtanalysis/0~20210112/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.37.90.20220207-1 binutils-common=2.37.90.20220207-1 binutils-x86-64-linux-gnu=2.37.90.20220207-1 bsdextrautils=2.37.3-1+b1 bsdutils=1:2.37.3-1+b1 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-16 dash=0.5.11+git20210903+057cd650a4ed-3 debconf=1.5.79 debhelper=13.6 debianutils=5.7-0.1 dh-autoreconf=20 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fonts-urw-base35=20200910-1 g++=4:11.2.0-2 g++-11=11.2.0-16 gcc=4:11.2.0-2 gcc-11=11.2.0-16 gcc-11-base=11.2.0-16 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-8 gzip=1.10-4 hdf5-helpers=1.10.7+repack-4 hostname=3.23 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-16 libatomic1=11.2.0-16 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libbinutils=2.37.90.20220207-1 libblas3=3.10.0-2 libblasr-dev=5.3.5+dfsg-2+b2 libblasr5.3.5=5.3.5+dfsg-2+b2 libblkid1=2.37.3-1+b1 libbrotli1=1.0.9-2+b3 libbsd0=0.11.5-1+b1 libbz2-1.0=1.0.8-5 libc-bin=2.33-5 libc-dev-bin=2.33-5 libc6=2.33-5 libc6-dev=2.33-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-16 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.37.90.20220207-1 libctf0=2.37.90.20220207-1 libcurl3-gnutls=7.81.0-1 libcurl4=7.81.0-1 libcurl4-gnutls-dev=7.81.0-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.6 libdeflate-dev=1.9-1 libdeflate0=1.9-1 libdpkg-perl=1.21.1 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.4-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libfreetype6=2.11.1+dfsg-1 libfribidi0=1.0.8-2 libgcc-11-dev=11.2.0-16 libgcc-s1=11.2.0-16 libgcrypt20=1.9.4-5 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgfortran5=11.2.0-16 libglib2.0-0=2.70.3-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.3-4+b1 libgomp1=11.2.0-16 libgpg-error0=1.43-3 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libharfbuzz0b=2.7.4-1 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libhts-dev=1.13+ds-2 libhts3=1.13+ds-2 libhtscodecs2=1.1.1-3+b1 libicu67=67.1-7 libidn2-0=2.3.2-2 libimagequant0=2.17.0-1 libisl23=0.24-2 libitm1=11.2.0-16 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack3=3.10.0-2 liblcms2-2=2.12~rc1-2 libldap-2.4-2=2.4.59+dfsg-1+b1 liblsan0=11.2.0-16 liblz4-1=1.9.3-2 liblzma-dev=5.2.5-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libmount1=2.37.3-1+b1 libmpc3=1.2.1-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.3-2 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopenjp2-7=2.4.0-6 libp11-kit0=0.24.0-6 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpbbam-dev=1.7.0+dfsg-2 libpbbam1.7.0=1.7.0+dfsg-2 libpbcopper-dev=1.9.3+dfsg-2 libpbcopper1.9.3=1.9.3+dfsg-2 libpbdata-dev=5.3.5+dfsg-2+b2 libpbihdf-dev=5.3.5+dfsg-2+b2 libpbseq-dev=5.3.5+dfsg-2+b2 libpcre2-8-0=10.39-3 libpcre3=2:8.39-13 libperl5.34=5.34.0-3 libpipeline1=1.5.5-1 libpng16-16=1.6.37-3 libpsl5=0.21.0-1.2 libpython3-stdlib=3.9.8-1 libpython3.10-minimal=3.10.2-1 libpython3.10-stdlib=3.10.2-1 libpython3.9-minimal=3.9.10-1 libpython3.9-stdlib=3.9.10-1 libquadmath0=11.2.0-16 libraqm0=0.7.0-4 libreadline8=8.1.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-3 libsasl2-modules-db=2.1.27+dfsg2-3 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.14-1 libsmartcols1=2.37.3-1+b1 libsqlite3-0=3.37.2-2 libssh2-1=1.10.0-2 libssl-dev=1.1.1m-1 libssl1.1=1.1.1m-1 libstdc++-11-dev=11.2.0-16 libstdc++6=11.2.0-16 libsub-override-perl=0.09-2 libsystemd0=250.3-2 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libtiff5=4.3.0-4 libtinfo6=6.3-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-16 libubsan1=11.2.0-16 libuchardet0=0.0.7-1 libudev1=250.3-2 libunistring2=1.0-1 libuuid1=2.37.3-1+b1 libwebp6=0.6.1-2.1 libwebpdemux2=0.6.1-2.1 libwebpmux3=0.6.1-2.1 libxau6=1:1.0.9-1 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxml2=2.9.12+dfsg-5+b1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.16.7-2 login=1:4.11.1+dfsg1-1 lsb-base=11.1.0 m4=1.4.18-5 mailcap=3.70+nmu1 make=4.3-4.1 man-db=2.10.1-1 mawk=1.3.4.20200120-3+b1 media-types=5.0.0 mime-support=3.66 ncurses-base=6.3-2 ncurses-bin=6.3-2 openssl=1.1.1m-1 patch=2.7.6-7 perl=5.34.0-3 perl-base=5.34.0-3 perl-modules-5.34=5.34.0-3 po-debconf=1.0.21+nmu1 python3=3.9.8-1 python3-avro=1.10.2+dfsg-1 python3-biopython=1.79+dfsg-1+b1 python3-certifi=2020.6.20-1 python3-chardet=4.0.0-1 python3-idna=3.2-2 python3-iso8601=0.1.16-1 python3-minimal=3.9.8-1 python3-numpy=1:1.21.5-1 python3-pbcommand=2.1.1+git20201023.cc0ed3d-1 python3-pbconsensuscore=1.1.1+dfsg-3+b1 python3-pbcore=2.1.2+dfsg-2 python3-pil=9.0.0-1 python3-pkg-resources=59.6.0-1.2 python3-pysam=0.17.0+ds-2+b1 python3-renderpm=3.6.5-1 python3-reportlab=3.6.5-1 python3-reportlab-accel=3.6.5-1 python3-requests=2.25.1+dfsg-2 python3-six=1.16.0-3 python3-tz=2021.3-1 python3-urllib3=1.26.5-1~exp1 python3.10=3.10.2-1 python3.10-minimal=3.10.2-1 python3.9=3.9.10-1 python3.9-minimal=3.9.10-1 readline-common=8.1.2-1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 tzdata=2021e-1 util-linux=2.37.3-1+b1 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220218T030127Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220218T030127Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220213T150108Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220209T214738Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d smrtanalysis=0~20210112 && mkdir -p /build/smrtanalysis-TKlGPu && dpkg-source --no-check -x /*.dsc /build/smrtanalysis-TKlGPu/smrtanalysis-0-20210112 && chown -R builduser:builduser /build/smrtanalysis-TKlGPu" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/smrtanalysis-TKlGPu/smrtanalysis-0-20210112 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1644758486" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/smrtanalysis-TKlGPu /tmp/smrtanalysis-0~20210112ce9cett_ bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220209T214738Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.wPwULRzb4w as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.wPwULRzb4w Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.3-1+b1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220209T214738Z unstable/main amd64 libfakeroot amd64 1.27-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220209T214738Z unstable/main amd64 fakeroot amd64 1.27-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (1044 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4697 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.27-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.27-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.27-1_amd64.deb ... Unpacking fakeroot (1.27-1) ... Setting up libfakeroot:amd64 (1.27-1) ... Setting up fakeroot (1.27-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220218T030127Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220218T030127Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220213T150108Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220209T214738Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.wPwULRzb4w Get:1 http://snapshot.notset.fr/archive/debian/20220218T030127Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220213T150108Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220209T214738Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220218T030127Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220218T030127Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220218T030127Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220218T030127Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220218T030127Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220218T030127Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220218T030127Z bookworm/main Sources [11.9 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220218T030127Z bookworm/main amd64 Packages [11.3 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220213T150108Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220213T150108Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220213T150108Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220213T150108Z unstable/main amd64 Packages [12.1 MB] Fetched 35.5 MB in 29s (1215 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.wPwULRzb4w I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d smrtanalysis=0~20210112 && mkdir -p /build/smrtanalysis-TKlGPu && dpkg-source --no-check -x /*.dsc /build/smrtanalysis-TKlGPu/smrtanalysis-0-20210112 && chown -R builduser:builduser /build/smrtanalysis-TKlGPu"' exec /tmp/mmdebstrap.wPwULRzb4w Reading package lists... NOTICE: 'smrtanalysis' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/smrtanalysis.git Please use: git clone https://salsa.debian.org/med-team/smrtanalysis.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4730 B of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220218T030127Z bookworm/main smrtanalysis 0~20210112 (dsc) [1918 B] Get:2 http://snapshot.notset.fr/archive/debian/20220218T030127Z bookworm/main smrtanalysis 0~20210112 (tar) [2812 B] Fetched 4730 B in 0s (57.4 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'smrtanalysis_0~20210112.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting smrtanalysis in /build/smrtanalysis-TKlGPu/smrtanalysis-0-20210112 dpkg-source: info: unpacking smrtanalysis_0~20210112.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/smrtanalysis-TKlGPu/smrtanalysis-0-20210112 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1644758486" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.wPwULRzb4w dpkg-buildpackage: info: source package smrtanalysis dpkg-buildpackage: info: source version 0~20210112 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary-indep dh binary-indep dh_update_autotools_config -i dh_autoreconf -i create-stamp debian/debhelper-build-stamp dh_prep -i dh_installdocs -i dh_installchangelogs -i dh_perl -i dh_link -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'smrtanalysis' in '../smrtanalysis_0~20210112_all.deb'. dpkg-genbuildinfo --build=all -O../smrtanalysis_0~20210112_all.buildinfo dpkg-genchanges --build=all -O../smrtanalysis_0~20210112_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/smrtanalysis-TKlGPu /tmp/smrtanalysis-0~20210112ce9cett_ I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.wPwULRzb4w... I: success in 679.9403 seconds md5: smrtanalysis_0~20210112_all.deb: OK sha1: smrtanalysis_0~20210112_all.deb: OK sha256: smrtanalysis_0~20210112_all.deb: OK Checksums: OK