Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/s/sibelia/sibelia_3.0.7+dfsg-3_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/sibelia-3.0.7+dfsg-3ekvq1epg/sibelia_3.0.7+dfsg-3_amd64.buildinfo Get source package info: sibelia=3.0.7+dfsg-3 Source URL: http://snapshot.notset.fr/mr/package/sibelia/3.0.7+dfsg-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-6 binutils=2.34-6 binutils-common=2.34-6 binutils-x86-64-linux-gnu=2.34-6 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.8 bzip2=1.0.8-2 cmake=3.16.3-1 cmake-data=3.16.3-1 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.3.0-10 dash=0.5.10.2-7 debconf=1.5.73 debhelper=12.10 debianutils=4.9.1 dh-autoreconf=19 dh-strip-nondeterminism=1.7.0-1 diffutils=1:3.7-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-5 fdisk=2.34-0.1 file=1:5.38-4 findutils=4.7.0-1 g++=4:9.2.1-3.1 g++-9=9.3.0-10 gcc=4:9.2.1-3.1 gcc-10-base=10-20200410-1 gcc-9=9.3.0-10 gcc-9-base=9.3.0-10 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.4-1 groff-base=1.22.4-4 gzip=1.10-2 hostname=3.23 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-6 libarchive-zip-perl=1.68-1 libarchive13=3.4.0-2 libasan5=9.3.0-10 libatomic1=10-20200410-1 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libbinutils=2.34-6 libblkid1=2.34-0.1 libboost-dev=1.67.0.2+b1 libboost1.67-dev=1.67.0-17+b1 libbrotli1=1.0.7-6+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libc-bin=2.30-4 libc-dev-bin=2.30-4 libc6=2.30-4 libc6-dev=2.30-4 libcap-ng0=0.7.9-2.1+b2 libcc1-0=10-20200410-1 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.16-1 libcrypt1=1:4.4.16-1 libctf-nobfd0=2.34-6 libctf0=2.34-6 libcurl3-gnutls=7.68.0-1 libcurl4=7.68.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.251 libdebhelper-perl=12.10 libdeflate0=1.5-3 libdivsufsort-dev=2.0.1-4 libdivsufsort3=2.0.1-4 libdpkg-perl=1.19.7 libelf1=0.176-1.1 libexpat1=2.2.9-1 libfdisk1=2.34-0.1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.7.0-1 libgcc-9-dev=9.3.0-10 libgcc-s1=10-20200410-1 libgcrypt20=1.8.5-5 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libglib2.0-0=2.64.1-1 libgmp10=2:6.2.0+dfsg-4 libgnutls30=3.6.13-2 libgomp1=10-20200410-1 libgpg-error0=1.37-1 libgssapi-krb5-2=1.17-7 libhogweed5=3.5.1+really3.5.1-2 libhts-dev=1.10.2-3 libhts3=1.10.2-3 libicu63=63.2-3 libidn2-0=2.3.0-1 libisl22=0.22.1-1 libitm1=10-20200410-1 libjsoncpp1=1.7.4-3.1 libk5crypto3=1.17-7 libkeyutils1=1.6.1-2 libkrb5-3=1.17-7 libkrb5support0=1.17-7 libldap-2.4-2=2.4.49+dfsg-3 libldap-common=2.4.49+dfsg-3 liblsan0=10-20200410-1 liblz4-1=1.9.2-2 liblzma-dev=5.2.4-1+b1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-4 libmagic1=1:5.38-4 libmount1=2.34-0.1 libmpc3=1.1.0-1 libmpfr6=4.0.2-1 libncurses6=6.2-1 libncursesw6=6.2-1 libnettle7=3.5.1+really3.5.1-2 libnghttp2-14=1.40.0-1 libp11-kit0=0.23.20-1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-12+b1 libperl5.30=5.30.0-9 libpipeline1=1.5.2-2 libprocps8=2:3.3.16-4 libpsl5=0.21.0-1 libquadmath0=10-20200410-1 librhash0=1.3.9-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.4.3-1 libselinux1=3.0-1+b3 libseqan2-dev=2.4.0+dfsg-12 libsigsegv2=2.12-2 libsmartcols1=2.34-0.1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1f-1 libstdc++-9-dev=9.3.0-10 libstdc++6=10-20200410-1 libsub-override-perl=0.09-2 libsystemd0=245.4-3 libtasn1-6=4.16.0-2 libtclap-dev=1.2.2-1+b1 libtinfo6=6.2-1 libtool=2.4.6-14 libtsan0=10-20200410-1 libubsan1=10-20200410-1 libuchardet0=0.0.6-3 libudev1=245.4-3 libunistring2=0.9.10-2 libuuid1=2.34-0.1 libuv1=1.34.2-1 libxml2=2.9.10+dfsg-5 libzstd1=1.4.4+dfsg-3 linux-libc-dev=5.5.13-2 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-1.2 man-db=2.9.1-1 mawk=1.3.4.20200120-2 ncurses-base=6.2-1 ncurses-bin=6.2-1 patch=2.7.6-6 perl=5.30.0-9 perl-base=5.30.0-9 perl-modules-5.30=5.30.0-9 po-debconf=1.0.21 procps=2:3.3.16-4 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-3 tar=1.30+dfsg-7 util-linux=2.34-0.1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200704T205323Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200412T202743Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d sibelia=3.0.7+dfsg-3 && mkdir -p /build/sibelia-R04scM && dpkg-source --no-check -x /*.dsc /build/sibelia-R04scM/sibelia-3.0.7+dfsg && chown -R builduser:builduser /build/sibelia-R04scM" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/sibelia-R04scM/sibelia-3.0.7+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1586852991" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/sibelia-R04scM /tmp/sibelia-3.0.7+dfsg-3ekvq1epg bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200412T202743Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.vfftq9pcHZ as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.vfftq9pcHZ Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200412T202743Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200412T202743Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (1086 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4503 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.30-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200704T205323Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200412T202743Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.vfftq9pcHZ Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200704T205323Z unstable InRelease [146 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20200412T202743Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20200704T205323Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200704T205323Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200704T205323Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20200704T205323Z unstable/main amd64 Packages [11.2 MB] Fetched 33.9 MB in 30s (1135 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.vfftq9pcHZ I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d sibelia=3.0.7+dfsg-3 && mkdir -p /build/sibelia-R04scM && dpkg-source --no-check -x /*.dsc /build/sibelia-R04scM/sibelia-3.0.7+dfsg && chown -R builduser:builduser /build/sibelia-R04scM"' exec /tmp/mmdebstrap.vfftq9pcHZ Reading package lists... NOTICE: 'sibelia' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sibelia.git Please use: git clone https://salsa.debian.org/med-team/sibelia.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 4846 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main sibelia 3.0.7+dfsg-3 (dsc) [2132 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main sibelia 3.0.7+dfsg-3 (tar) [4833 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main sibelia 3.0.7+dfsg-3 (diff) [10.2 kB] Fetched 4846 kB in 4s (1155 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'sibelia_3.0.7+dfsg-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting sibelia in /build/sibelia-R04scM/sibelia-3.0.7+dfsg dpkg-source: info: unpacking sibelia_3.0.7+dfsg.orig.tar.xz dpkg-source: info: unpacking sibelia_3.0.7+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch dpkg-source: info: applying use_debian_packaged_lagan.patch dpkg-source: info: applying snpeff_is_removed.patch dpkg-source: info: applying 2to3.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/sibelia-R04scM/sibelia-3.0.7+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1586852991" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.vfftq9pcHZ dpkg-buildpackage: info: source package sibelia dpkg-buildpackage: info: source version 3.0.7+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_AUTOGEN_VERBOSE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ../src -- The CXX compiler identification is GNU 9.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_AUTOGEN_VERBOSE CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu dh_auto_build -a -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src -B/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/Sibelia.dir/build.make CMakeFiles/Sibelia.dir/depend make[3]: Entering directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' cd /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles/Sibelia.dir/DependInfo.cmake --color= Scanning dependencies of target Sibelia make[3]: Leaving directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/Sibelia.dir/build.make CMakeFiles/Sibelia.dir/build make[3]: Entering directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' [ 5%] Building CXX object CMakeFiles/Sibelia.dir/sibelia.cpp.o [ 10%] Building CXX object CMakeFiles/Sibelia.dir/postprocessor.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/postprocessor.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/postprocessor.cpp [ 15%] Building CXX object CMakeFiles/Sibelia.dir/util.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/sibelia.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/sibelia.cpp /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/util.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.cpp [ 20%] Building CXX object CMakeFiles/Sibelia.dir/indexedsequence.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/indexedsequence.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.cpp In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/hashing.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/hashing.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ [ 25%] Building CXX object CMakeFiles/Sibelia.dir/outputgenerator.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/outputgenerator.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/outputgenerator.cpp [ 30%] Building CXX object CMakeFiles/Sibelia.dir/blockfinder.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/blockfinder.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.cpp In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/sibelia.cpp:9: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/9/bits/locale_conv.h:41, from /usr/include/c++/9/locale:43, from /usr/include/c++/9/iomanip:43, from /usr/include/tclap/Arg.h:37, from /usr/include/tclap/SwitchArg.h:30, from /usr/include/tclap/CmdLine.h:27, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/sibelia.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/sibelia.cpp:9: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/9/bits/locale_conv.h:41, from /usr/include/c++/9/locale:43, from /usr/include/c++/9/iomanip:43, from /usr/include/tclap/Arg.h:37, from /usr/include/tclap/SwitchArg.h:30, from /usr/include/tclap/CmdLine.h:27, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/sibelia.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/sibelia.cpp: In function ‘int main(int, char**)’: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/sibelia.cpp:239:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 239 | std::auto_ptr finder(inRAM.isSet() ? new SyntenyFinder::BlockFinder(chrList) : new SyntenyFinder::BlockFinder(chrList, tempDir)); | ^~~~~~~~ In file included from /usr/include/c++/9/bits/locale_conv.h:41, from /usr/include/c++/9/locale:43, from /usr/include/c++/9/iomanip:43, from /usr/include/tclap/Arg.h:37, from /usr/include/tclap/SwitchArg.h:30, from /usr/include/tclap/CmdLine.h:27, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/sibelia.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ [ 35%] Building CXX object CMakeFiles/Sibelia.dir/blockinstance.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/blockinstance.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.cpp [ 40%] Building CXX object CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/bifurcationstorage.cpp [ 45%] Building CXX object CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ [ 50%] Building CXX object CMakeFiles/Sibelia.dir/dnasequence.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/dnasequence.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/dnasequence.cpp [ 55%] Building CXX object CMakeFiles/Sibelia.dir/edge.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/edge.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/edge.cpp [ 60%] Building CXX object CMakeFiles/Sibelia.dir/fasta.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/fasta.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/fasta.cpp [ 65%] Building CXX object CMakeFiles/Sibelia.dir/serialization.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/serialization.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/serialization.cpp In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/edge.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/edge.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/edge.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/edge.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ [ 70%] Building CXX object CMakeFiles/Sibelia.dir/synteny.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/synteny.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/synteny.cpp In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/serialization.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/serialization.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/serialization.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/serialization.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ [ 75%] Building CXX object CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.cpp In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/synteny.cpp:9: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/synteny.cpp:9: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/synteny.cpp:9: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/synteny.cpp:9: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ [ 80%] Building CXX object CMakeFiles/Sibelia.dir/platform.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/platform.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/platform.cpp [ 85%] Building CXX object CMakeFiles/Sibelia.dir/stranditerator.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/stranditerator.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/stranditerator.cpp [ 90%] Building CXX object CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp [ 95%] Building CXX object CMakeFiles/Sibelia.dir/resource.cpp.o /usr/bin/c++ -I/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/resource.cpp.o -c /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/resource.cpp In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/hashing.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp:7: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/9/memory:80, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/hashing.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/indexedsequence.h:10, from /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp:7: /usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here 53 | template class auto_ptr; | ^~~~~~~~ /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/resource.cpp: In function ‘(static initializers for /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/resource.cpp)’: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src/resource.cpp:7108:1: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without 7108 | } | ^ [100%] Linking CXX executable Sibelia /usr/bin/cmake -E cmake_link_script CMakeFiles/Sibelia.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/sibelia-R04scM/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/Sibelia.dir/sibelia.cpp.o CMakeFiles/Sibelia.dir/postprocessor.cpp.o CMakeFiles/Sibelia.dir/indexedsequence.cpp.o CMakeFiles/Sibelia.dir/util.cpp.o CMakeFiles/Sibelia.dir/outputgenerator.cpp.o CMakeFiles/Sibelia.dir/blockfinder.cpp.o CMakeFiles/Sibelia.dir/blockinstance.cpp.o CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o CMakeFiles/Sibelia.dir/dnasequence.cpp.o CMakeFiles/Sibelia.dir/edge.cpp.o CMakeFiles/Sibelia.dir/fasta.cpp.o CMakeFiles/Sibelia.dir/serialization.cpp.o CMakeFiles/Sibelia.dir/synteny.cpp.o CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o CMakeFiles/Sibelia.dir/platform.cpp.o CMakeFiles/Sibelia.dir/stranditerator.cpp.o CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o CMakeFiles/Sibelia.dir/resource.cpp.o -o Sibelia -ldivsufsort make[3]: Leaving directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' [100%] Built target Sibelia make[2]: Leaving directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg' dh_auto_test --no-parallel make[1]: Leaving directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install -a -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/sibelia-R04scM/sibelia-3.0.7\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/sibelia-R04scM/sibelia-3.0.7+dfsg/src -B/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/Sibelia.dir/build.make CMakeFiles/Sibelia.dir/depend make[3]: Entering directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' cd /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src /build/sibelia-R04scM/sibelia-3.0.7+dfsg/src /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles/Sibelia.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/Sibelia.dir/build.make CMakeFiles/Sibelia.dir/build make[3]: Entering directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/Sibelia.dir/build'. make[3]: Leaving directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' [100%] Built target Sibelia make[2]: Leaving directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/bin/Sibelia -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/NEWS.md -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/ANNOTATION.md -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/README.md -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/USAGE.md -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/INSTALL.md -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/SIBELIA.md -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/C-SIBELIA.md -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/LICENSE.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/variant.vcf -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/NCTC8325.fasta -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/README.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/RN4220.fasta -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight3.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.sequences.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.png -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.segdup.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.svg -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight1.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight4.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.conf -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.image.conf -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight2.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/d3_blocks_diagram.html -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/README.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/genomes_permutations.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/blocks_coords.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/Helicobacter_pylori.fasta -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/coverage_report.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.sequences.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.png -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.segdup.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.highlight.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.svg -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.conf -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.image.conf -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/d3_blocks_diagram.html -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/Staphylococcus.fasta -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/README.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/genomes_permutations.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/blocks_coords.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/coverage_report.txt -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/bin/C-Sibelia.py -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/utils -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/utils/hidemappedcontigs.py -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/utils/sortsequences.py -- Installing: /build/sibelia-R04scM/sibelia-3.0.7+dfsg/debian/tmp/usr/lib/Sibelia make[1]: Leaving directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg' dh_install find debian -name LICENSE.txt -delete find debian -name INSTALL.md -delete make[1]: Leaving directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg' dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src debian/rules override_dh_installman-arch make[1]: Entering directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg' dh_installman -a mv debian/sibelia/usr/share/man/py/man1/C-Sibelia.1 debian/sibelia/usr/share/man/man1/C-Sibelia.py.1 rm -rf debian/sibelia/usr/share/man/py make[1]: Leaving directory '/build/sibelia-R04scM/sibelia-3.0.7+dfsg' dh_installinit -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_lintian -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'sibelia' in '../sibelia_3.0.7+dfsg-3_amd64.deb'. dpkg-deb: building package 'sibelia-dbgsym' in '../sibelia-dbgsym_3.0.7+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../sibelia_3.0.7+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/sibelia-R04scM /tmp/sibelia-3.0.7+dfsg-3ekvq1epg I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.vfftq9pcHZ... I: success in 603.5983 seconds md5: sibelia-dbgsym_3.0.7+dfsg-3_amd64.deb: OK md5: sibelia_3.0.7+dfsg-3_amd64.deb: OK sha1: sibelia-dbgsym_3.0.7+dfsg-3_amd64.deb: OK sha1: sibelia_3.0.7+dfsg-3_amd64.deb: OK sha256: sibelia-dbgsym_3.0.7+dfsg-3_amd64.deb: OK sha256: sibelia_3.0.7+dfsg-3_amd64.deb: OK Checksums: OK