Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/s/shapeit4/shapeit4_4.2.0+dfsg-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/shapeit4-4.2.0+dfsg-1ocldggxd/shapeit4_4.2.0+dfsg-1_amd64.buildinfo Get source package info: shapeit4=4.2.0+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/shapeit4/4.2.0+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.48 bash=5.1-2 binutils=2.35.1-7 binutils-common=2.35.1-7 binutils-x86-64-linux-gnu=2.35.1-7 bsdextrautils=2.36.1-6 bsdutils=1:2.36.1-6 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20200708+dd9ef66-5 debconf=1.5.74 debhelper=13.3.3 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.10.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.13+20210126-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-2 hostname=3.23 icu-devtools=67.1-6 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.1-7 libblkid1=2.36.1-6 libboost-iostreams-dev=1.74.0.3 libboost-iostreams1.74-dev=1.74.0-8 libboost-iostreams1.74.0=1.74.0-8 libboost-program-options-dev=1.74.0.3 libboost-program-options1.74-dev=1.74.0-8 libboost-program-options1.74.0=1.74.0-8 libboost-regex1.74-dev=1.74.0-8 libboost-regex1.74.0=1.74.0-8 libboost1.74-dev=1.74.0-8 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libbz2-dev=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.45.7-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-7 libctf0=2.35.1-7 libcurl3-gnutls=7.74.0-1 libcurl4-gnutls-dev=7.74.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.256 libdebhelper-perl=13.3.3 libdeflate-dev=1.7-1 libdeflate0=1.7-1 libdpkg-perl=1.20.7.1 libelf1=0.182+20210203-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.10.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-2 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.0-5 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libhogweed6=3.7-2 libhts-dev=1.11-4 libhts3=1.11-4 libicu-dev=67.1-6 libicu67=67.1-6 libidn2-0=2.3.0-5 libisl23=0.23-1 libitm1=10.2.1-6 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 libldap-2.4-2=2.4.57+dfsg-1 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma-dev=5.2.5-1.0 liblzma5=5.2.5-1.0 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-6 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libnettle8=3.7-2 libnghttp2-14=1.42.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.23.22-1 libpam-modules=1.4.0-4 libpam-modules-bin=1.4.0-4 libpam-runtime=1.4.0-4 libpam0g=1.4.0-4 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-2 libpipeline1=1.5.3-1 libpsl5=0.21.0-1.1 libquadmath0=10.2.1-6 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.1-1 libselinux1=3.1-2+b2 libsigsegv2=2.13-1 libsmartcols1=2.36.1-6 libssh2-1=1.9.0-2 libssl1.1=1.1.1i-3 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.3-1 libtasn1-6=4.16.0-2 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-1 libunistring2=0.9.10-4 libuuid1=2.36.1-6 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-1 linux-libc-dev=5.10.12-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.1-2 perl-base=5.32.1-2 perl-modules-5.32=5.32.1-2 po-debconf=1.0.21+nmu1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 util-linux=2.36.1-6 xz-utils=5.2.5-1.0 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210204T083352Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d shapeit4=4.2.0+dfsg-1 && mkdir -p /build/shapeit4-crFpuF && dpkg-source --no-check -x /*.dsc /build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg && chown -R builduser:builduser /build/shapeit4-crFpuF" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612434055" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/shapeit4-crFpuF /tmp/shapeit4-4.2.0+dfsg-1ocldggxd bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210204T083352Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.cAV7eiCR2x as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.cAV7eiCR2x Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-6). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210204T083352Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210204T083352Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (693 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4663 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210204T083352Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.cAV7eiCR2x Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210204T083352Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 19s (1159 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.cAV7eiCR2x I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d shapeit4=4.2.0+dfsg-1 && mkdir -p /build/shapeit4-crFpuF && dpkg-source --no-check -x /*.dsc /build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg && chown -R builduser:builduser /build/shapeit4-crFpuF"' exec /tmp/mmdebstrap.cAV7eiCR2x Reading package lists... NOTICE: 'shapeit4' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/shapeit4.git Please use: git clone https://salsa.debian.org/med-team/shapeit4.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 59.0 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main shapeit4 4.2.0+dfsg-1 (dsc) [2147 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main shapeit4 4.2.0+dfsg-1 (tar) [59.0 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main shapeit4 4.2.0+dfsg-1 (diff) [5188 B] Fetched 59.0 MB in 48s (1229 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'shapeit4_4.2.0+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting shapeit4 in /build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg dpkg-source: info: unpacking shapeit4_4.2.0+dfsg.orig.tar.xz dpkg-source: info: unpacking shapeit4_4.2.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_shared_libs.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1612434055" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.cAV7eiCR2x dpkg-buildpackage: info: source package shapeit4 dpkg-buildpackage: info: source version 4.2.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg' rm -f obj/*.o bin/shapeit4.2 make[1]: Leaving directory '/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg' g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/main.cpp -o obj/main.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/hmm_parameters.cpp -o obj/hmm_parameters.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/variant.cpp -o obj/variant.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/genotype/genotype_managment.cpp -o obj/genotype_managment.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include In file included from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/phaser/phaser_header.h:29, from src/main.cpp:23: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/genotype/genotype_sweep.cpp -o obj/genotype_sweep.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/genotype/genotype_mask.cpp -o obj/genotype_mask.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/genotype/genotype_build.cpp -o obj/genotype_build.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/genotype/genotype_prune.cpp -o obj/genotype_prune.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/compute_job.cpp -o obj/compute_job.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/io/graph_writer.cpp -o obj/graph_writer.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/io/genotype_reader1.cpp -o obj/genotype_reader1.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/io/gmap_reader.cpp -o obj/gmap_reader.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include In file included from src/objects/compute_job.h:27, from src/objects/compute_job.cpp:22: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ In file included from src/io/genotype_reader.h:28, from src/io/genotype_reader1.cpp:22: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/io/haplotype_writer.cpp -o obj/haplotype_writer.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/io/genotype_reader2.cpp -o obj/genotype_reader2.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/phaser/phaser_management.cpp -o obj/phaser_management.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include In file included from src/io/haplotype_writer.h:28, from src/io/haplotype_writer.cpp:22: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ In file included from src/io/genotype_reader.h:28, from src/io/genotype_reader2.cpp:22: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/phaser/phaser_algorithm.cpp -o obj/phaser_algorithm.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include src/io/haplotype_writer.cpp: In member function ‘void haplotype_writer::writeHaplotypes(std::string)’: src/io/haplotype_writer.cpp:59:15: warning: ignoring return value of ‘int bcf_hdr_write(htsFile*, bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 59 | bcf_hdr_write(fp, hdr); | ~~~~~~~~~~~~~^~~~~~~~~ In file included from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/phaser/phaser_header.h:29, from src/phaser/phaser_management.cpp:22: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/phaser/phaser_parameters.cpp -o obj/phaser_parameters.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include In file included from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/phaser/phaser_header.h:29, from src/phaser/phaser_algorithm.cpp:22: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ In file included from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/phaser/phaser_header.h:29, from src/phaser/phaser_parameters.cpp:23: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/phaser/phaser_initialise.cpp -o obj/phaser_initialise.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/phaser/phaser_finalise.cpp -o obj/phaser_finalise.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/modules/pbwt_solver.cpp -o obj/pbwt_solver.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include In file included from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/phaser/phaser_header.h:29, from src/phaser/phaser_initialise.cpp:22: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ In file included from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/phaser/phaser_header.h:29, from src/phaser/phaser_finalise.cpp:22: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ In file included from src/modules/pbwt_solver.h:26, from src/modules/pbwt_solver.cpp:22: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/modules/builder.cpp -o obj/builder.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/models/haplotype_segment_single.cpp -o obj/haplotype_segment_single.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/models/haplotype_segment_double.cpp -o obj/haplotype_segment_double.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/containers/haplotype_set.cpp -o obj/haplotype_set.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include In file included from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/models/haplotype_segment_single.cpp:22: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ In file included from src/objects/compute_job.h:27, from src/models/haplotype_segment_double.h:26, from src/models/haplotype_segment_double.cpp:22: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/containers/bitmatrix.cpp -o obj/bitmatrix.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include In file included from src/containers/haplotype_set.cpp:22: src/containers/haplotype_set.h: In member function ‘bool IBD2track::merge(const IBD2track&)’: src/containers/haplotype_set.h:53:2: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/containers/variant_map.cpp -o obj/variant_map.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/containers/genotype_set.cpp -o obj/genotype_set.o -Isrc -I/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.9 -I/usr/include g++ -std=c++11 -Wl,-z,relro -Wl,-z,now -O3 obj/main.o obj/hmm_parameters.o obj/variant.o obj/genotype_managment.o obj/genotype_sweep.o obj/genotype_mask.o obj/genotype_build.o obj/genotype_prune.o obj/compute_job.o obj/graph_writer.o obj/genotype_reader1.o obj/gmap_reader.o obj/haplotype_writer.o obj/genotype_reader2.o obj/phaser_management.o obj/phaser_algorithm.o obj/phaser_parameters.o obj/phaser_initialise.o obj/phaser_finalise.o obj/pbwt_solver.o obj/builder.o obj/haplotype_segment_single.o obj/haplotype_segment_double.o obj/haplotype_set.o obj/bitmatrix.o obj/variant_map.o obj/genotype_set.o -lhts -lboost_iostreams -lboost_program_options -o bin/shapeit4.2 -lz -lbz2 -lm -lpthread -llzma make[1]: Leaving directory '/build/shapeit4-crFpuF/shapeit4-4.2.0+dfsg' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'shapeit4-dbgsym' in '../shapeit4-dbgsym_4.2.0+dfsg-1_amd64.deb'. dpkg-deb: building package 'shapeit4' in '../shapeit4_4.2.0+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../shapeit4_4.2.0+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/shapeit4-crFpuF /tmp/shapeit4-4.2.0+dfsg-1ocldggxd I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.cAV7eiCR2x... I: success in 758.0147 seconds md5: Value of 'md5' differs for shapeit4-dbgsym_4.2.0+dfsg-1_amd64.deb md5: Size differs for shapeit4-dbgsym_4.2.0+dfsg-1_amd64.deb md5: Value of 'md5' differs for shapeit4_4.2.0+dfsg-1_amd64.deb md5: Size differs for shapeit4_4.2.0+dfsg-1_amd64.deb sha1: Value of 'sha1' differs for shapeit4-dbgsym_4.2.0+dfsg-1_amd64.deb sha1: Size differs for shapeit4-dbgsym_4.2.0+dfsg-1_amd64.deb sha1: Value of 'sha1' differs for shapeit4_4.2.0+dfsg-1_amd64.deb sha1: Size differs for shapeit4_4.2.0+dfsg-1_amd64.deb sha256: Value of 'sha256' differs for shapeit4-dbgsym_4.2.0+dfsg-1_amd64.deb sha256: Size differs for shapeit4-dbgsym_4.2.0+dfsg-1_amd64.deb sha256: Value of 'sha256' differs for shapeit4_4.2.0+dfsg-1_amd64.deb sha256: Size differs for shapeit4_4.2.0+dfsg-1_amd64.deb Checksums: FAIL Cannot generate diffoscope for shapeit4-dbgsym_4.2.0+dfsg-1_amd64.deb: Cannot find URL: http://snapshot.notset.fr/mr/file/b537926bcc62fa1c997844f1255c3db027f1be6f28211a778490ff3c0633550a/download diffoscope run passed