Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/s/scrappie/scrappie_1.4.2-8+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/scrappie-1.4.2-8+b1dem469g3/scrappie_1.4.2-8+b1_amd64.buildinfo Get source package info: scrappie=1.4.2-8 Source URL: http://snapshot.notset.fr/mr/package/scrappie/1.4.2-8/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.38-3 binutils-common=2.38-3 binutils-x86-64-linux-gnu=2.38-3 bsdextrautils=2.38-4 bsdutils=1:2.38-4 build-essential=12.9 bzip2=1.0.8-5 cmake=3.23.1-2 cmake-data=3.23.1-2 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.3.0-1 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.7.1 debianutils=5.7-0.2 dh-autoreconf=20 dh-elpa-helper=2.0.10 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.7 dpkg-dev=1.21.7 dwz=0.14-1 emacsen-common=3.0.4 file=1:5.41-4 findutils=4.9.0-3 g++=4:11.2.0-2 g++-11=11.3.0-1 gcc=4:11.2.0-2 gcc-11=11.3.0-1 gcc-11-base=11.3.0-1 gcc-12-base=12-20220428-1 gettext=0.21-6 gettext-base=0.21-6 grep=3.7-1 groff-base=1.22.4-8 gzip=1.12-1 hdf5-helpers=1.10.7+repack-4 hostname=3.23 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libaec-dev=1.0.6-1 libaec0=1.0.6-1 libarchive-zip-perl=1.68-1 libarchive13=3.6.0-1 libasan6=11.3.0-1 libatomic1=12-20220428-1 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libbinutils=2.38-3 libblkid1=2.38-4 libbrotli1=1.0.9-2+b3 libbz2-1.0=1.0.8-5 libc-bin=2.33-7 libc-dev-bin=2.33-7 libc6=2.33-7 libc6-dev=2.33-7 libcap-ng0=0.7.9-2.2+b2 libcap2=1:2.44-1 libcc1-0=12-20220428-1 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-3 libctf0=2.38-3 libcunit1=2.1-3-dfsg-2.4 libcunit1-dev=2.1-3-dfsg-2.4 libcurl4=7.83.0-1 libcurl4-openssl-dev=7.83.0-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.262 libdebhelper-perl=13.7.1 libdpkg-perl=1.21.7 libelf1=0.186-1 libexpat1=2.4.8-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.3.0-1 libgcc-s1=12-20220428-1 libgcrypt20=1.10.1-2 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgfortran5=12-20220428-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.4-2 libgomp1=12-20220428-1 libgpg-error0=1.45-2 libgssapi-krb5-2=1.19.2-2+b1 libhdf5-103-1=1.10.7+repack-4 libhdf5-cpp-103-1=1.10.7+repack-4 libhdf5-dev=1.10.7+repack-4 libhdf5-fortran-102=1.10.7+repack-4 libhdf5-hl-100=1.10.7+repack-4 libhdf5-hl-cpp-100=1.10.7+repack-4 libhdf5-hl-fortran-100=1.10.7+repack-4 libhogweed6=3.7.3-1 libicu71=71.1-2 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=12-20220428-1 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libjsoncpp25=1.9.5-4 libk5crypto3=1.19.2-2+b1 libkeyutils1=1.6.1-3 libkrb5-3=1.19.2-2+b1 libkrb5support0=1.19.2-2+b1 libldap-2.5-0=2.5.11+dfsg-1 liblsan0=12-20220428-1 liblz4-1=1.9.3-2 liblzma5=5.2.5-2.1 libmagic-mgc=1:5.41-4 libmagic1=1:5.41-4 libmount1=2.38-4 libmpc3=1.2.1-2 libmpfr6=4.1.0-3 libncurses6=6.3+20220423-1 libncursesw6=6.3+20220423-1 libnettle8=3.7.3-1 libnghttp2-14=1.47.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libopenblas-dev=0.3.20+ds-1 libopenblas-pthread-dev=0.3.20+ds-1 libopenblas0=0.3.20+ds-1 libopenblas0-pthread=0.3.20+ds-1 libp11-kit0=0.24.1-1 libpam-modules=1.4.0-13 libpam-modules-bin=1.4.0-13 libpam-runtime=1.4.0-13 libpam0g=1.4.0-13 libpcre2-8-0=10.40-1 libpcre3=2:8.39-14 libperl5.34=5.34.0-4 libpipeline1=1.5.6-1 libprocps8=2:3.3.17-7+b1 libpsl5=0.21.0-1.2 libquadmath0=12-20220428-1 librhash0=1.4.2-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.28+dfsg-4 libsasl2-modules-db=2.1.28+dfsg-4 libseccomp2=2.5.4-1 libselinux1=3.3-1+b2 libsigsegv2=2.14-1 libsimde-dev=0.7.2-6 libsmartcols1=2.38-4 libssh2-1=1.10.0-3 libssl-dev=1.1.1n-1 libssl1.1=1.1.1n-1 libstdc++-11-dev=11.3.0-1 libstdc++6=12-20220428-1 libsub-override-perl=0.09-2 libsystemd0=250.4-1 libsz2=1.0.6-1 libtasn1-6=4.18.0-4 libtinfo6=6.3+20220423-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-3 libtsan0=11.3.0-1 libubsan1=12-20220428-1 libuchardet0=0.0.7-1 libudev1=250.4-1 libunistring2=1.0-1 libuuid1=2.38-4 libuv1=1.44.1-2 libxml2=2.9.13+dfsg-1+b1 libzstd1=1.5.2+dfsg-1 linux-libc-dev=5.17.3-1 login=1:4.11.1+dfsg1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3+b1 ncurses-base=6.3+20220423-1 ncurses-bin=6.3+20220423-1 patch=2.7.6-7 perl=5.34.0-4 perl-base=5.34.0-4 perl-modules-5.34=5.34.0-4 po-debconf=1.0.21+nmu1 procps=2:3.3.17-7+b1 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.03-1 tar=1.34+dfsg-1 util-linux=2.38-4 util-linux-extra=2.38-4 xz-utils=5.2.5-2.1 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211005T025108Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211005T025108Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220501T215056Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d scrappie=1.4.2-8 && mkdir -p /build/scrappie-2rTbNr && dpkg-source --no-check -x /*.dsc /build/scrappie-2rTbNr/scrappie-1.4.2 && cd /build/scrappie-2rTbNr/scrappie-1.4.2 && { printf '%s' 'scrappie (1.4.2-8+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for outdated Built-Using -- all / amd64 / i386 Build Daemon (x86-conova-01) Sun, 01 May 2022 23:36:02 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/scrappie-2rTbNr" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/scrappie-2rTbNr/scrappie-1.4.2 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1651448162" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/scrappie-2rTbNr /tmp/scrappie-1.4.2-8+b1dem469g3 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.QgHx1NVNVx as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.QgHx1NVNVx Reading package lists... Building dependency tree... util-linux is already the newest version (2.38-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable/main amd64 libfakeroot amd64 1.28-1 [48.2 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable/main amd64 fakeroot amd64 1.28-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (1075 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4627 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.28-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.28-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.28-1_amd64.deb ... Unpacking fakeroot (1.28-1) ... Setting up libfakeroot:amd64 (1.28-1) ... Setting up fakeroot (1.28-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211005T025108Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211005T025108Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220501T215056Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.QgHx1NVNVx Get:1 http://snapshot.notset.fr/archive/debian/20211005T025108Z bookworm InRelease [128 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220501T215056Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211005T025108Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211005T025108Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211005T025108Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211005T025108Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211005T025108Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211005T025108Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211005T025108Z bookworm/main Sources [11.7 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211005T025108Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.0 MB in 19s (1227 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.QgHx1NVNVx I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d scrappie=1.4.2-8 && mkdir -p /build/scrappie-2rTbNr && dpkg-source --no-check -x /*.dsc /build/scrappie-2rTbNr/scrappie-1.4.2 && cd /build/scrappie-2rTbNr/scrappie-1.4.2 && { printf '%s' 'scrappie (1.4.2-8+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for outdated Built-Using -- all / amd64 / i386 Build Daemon (x86-conova-01) Sun, 01 May 2022 23:36:02 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/scrappie-2rTbNr"' exec /tmp/mmdebstrap.QgHx1NVNVx Reading package lists... NOTICE: 'scrappie' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/scrappie.git Please use: git clone https://salsa.debian.org/med-team/scrappie.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 21.8 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211005T025108Z bookworm/main scrappie 1.4.2-8 (dsc) [2106 B] Get:2 http://snapshot.notset.fr/archive/debian/20211005T025108Z bookworm/main scrappie 1.4.2-8 (tar) [21.8 MB] Get:3 http://snapshot.notset.fr/archive/debian/20211005T025108Z bookworm/main scrappie 1.4.2-8 (diff) [14.3 kB] Fetched 21.8 MB in 17s (1290 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'scrappie_1.4.2-8.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting scrappie in /build/scrappie-2rTbNr/scrappie-1.4.2 dpkg-source: info: unpacking scrappie_1.4.2.orig.tar.gz dpkg-source: info: unpacking scrappie_1.4.2-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying simde.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/scrappie-2rTbNr/scrappie-1.4.2 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1651448162" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.QgHx1NVNVx dpkg-buildpackage: info: source package scrappie dpkg-buildpackage: info: source version 1.4.2-8+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2' dh_auto_clean install -d /build/scrappie-2rTbNr/scrappie-1.4.2/debian/.debhelper/generated/_source/home rm -Rf build_* make[1]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/scrappie.substvars debian/files rm -fr -- debian/scrappie/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --buildsystem=cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2' for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && export CFLAGS="-g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory build_${SIMD} -- -DEXE_SUFFIX=-${SIMD} ; \ done install -d /build/scrappie-2rTbNr/scrappie-1.4.2/debian/.debhelper/generated/_source/home install -d build_avx2 cd build_avx2 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-avx2 .. -- The C compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 install -d build_avx cd build_avx && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-avx .. -- The C compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx install -d build_sse4.1 cd build_sse4.1 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-sse4.1 .. -- The C compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse4.1 install -d build_ssse3 cd build_ssse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-ssse3 .. -- The C compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3 install -d build_sse3 cd build_sse3 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-sse3 .. -- The C compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3 install -d build_sse2 cd build_sse2 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-sse2 .. -- The C compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2 export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && export CFLAGS="-g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3" && \ dh_auto_configure --builddirectory build_plain -- -DEXE_SUFFIX=-plain install -d build_plain cd build_plain && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DEXE_SUFFIX=-plain .. -- The C compiler identification is GNU 11.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test HAS_OPENMP -- Performing Test HAS_OPENMP - Success -- Looking for hdf5.h -- Looking for hdf5.h - not found -- Looking for hdf5/serial/hdf5.h -- Looking for hdf5/serial/hdf5.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR EXE_SUFFIX -- Build files have been written to: /build/scrappie-2rTbNr/scrappie-1.4.2/build_plain make[1]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2' rm -f debian/scrappie.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2' mkdir -p /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/bin for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ dh_auto_build --builddirectory build_${SIMD} && \ cp build_${SIMD}/scrappie build_${SIMD}/scrappie-${SIMD} ; \ done cd build_avx2 && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' /usr/bin/cmake -S/build/scrappie-2rTbNr/scrappie-1.4.2 -B/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/CMakeFiles /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/depend make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' cd /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_objects.dir/DependInfo.cmake --color= make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' cd /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/CMakeFiles/test_interface.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/build make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/build make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' [ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/test_interface.dir/src/test_interface.c.o -MF CMakeFiles/test_interface.dir/src/test_interface.c.o.d -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test_interface.c [ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o [ 7%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/decode.c.o -MF CMakeFiles/scrappie_objects.dir/src/decode.c.o.d -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/decode.c [ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/layers.c.o -MF CMakeFiles/scrappie_objects.dir/src/layers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/layers.c [ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o [ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/networks.c.o -MF CMakeFiles/scrappie_objects.dir/src/networks.c.o.d -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/networks.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -MF CMakeFiles/scrappie_objects.dir/src/event_detection.c.o.d -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/event_detection.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -MF CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o.d -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/nnfeatures.c [ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_common.c [ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_seq_helpers.c [ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_matrix.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/util.c.o -MF CMakeFiles/scrappie_objects.dir/src/util.c.o.d -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/util.c [ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -MF CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o.d -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/homopolymer.c [ 31%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' [ 31%] Built target test_interface make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' [ 31%] Built target scrappie_objects make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/depend make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' cd /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/CMakeFiles/scrappie_static.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/build make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' [ 34%] Linking C static library libscrappie.a /usr/bin/cmake -P CMakeFiles/scrappie_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_static.dir/link.txt --verbose=1 /usr/bin/ar qc libscrappie.a CMakeFiles/scrappie_objects.dir/src/decode.c.o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o CMakeFiles/scrappie_objects.dir/src/layers.c.o CMakeFiles/scrappie_objects.dir/src/networks.c.o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o CMakeFiles/scrappie_objects.dir/src/util.c.o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/ranlib libscrappie.a make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' [ 34%] Built target scrappie_static make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' cd /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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'/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build [ 36%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o [ 39%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o [ 42%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_raw.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_raw.c [ 44%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o [ 47%] Building C object 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-I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_events.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_events.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_events.c [ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -MF 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-I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_test_runner.c [ 63%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_event_table.c [ 65%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_map_to_sequence.c [ 68%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_util.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/11/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_util.c:6: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 73%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_convolution.c [ 76%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_skeleton.c [ 78%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -MF 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-I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_matrix.c [ 89%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong 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cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' [ 97%] Built target scrappie [100%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o 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/build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_seq_helpers.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_matrix.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 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-ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' [ 31%] Built target test_interface make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' [ 31%] Built target scrappie_objects make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/depend make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' cd /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx 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CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o CMakeFiles/scrappie_objects.dir/src/util.c.o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/ranlib libscrappie.a make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' [ 34%] Built target scrappie_static make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' cd /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx/CMakeFiles/scrappie.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' cd /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx /build/scrappie-2rTbNr/scrappie-1.4.2/build_avx/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' [ 36%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx/include 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CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_map_to_sequence.c [ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o [ 44%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_mappy.c [ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o [ 50%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_squiggle.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_util.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_events.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_events.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_events.c [ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie.c.o -MF CMakeFiles/scrappie.dir/src/scrappie.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie.c [ 57%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/11/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_util.c:6: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o.d -o 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-rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm [100%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o 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warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_convolution.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_mappy.c [ 60%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse4.1/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_raw.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c 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-I/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_seq_helpers.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/layers.c.o -MF CMakeFiles/scrappie_objects.dir/src/layers.c.o.d -o 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CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_test_runner.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_map_to_sequence.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_mappy.c [ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_squiggle.c [ 57%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_subcommands.c [ 60%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_util.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/11/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_util.c:6: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.c [ 65%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_help.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_help.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_help.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 68%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o /usr/bin/cc 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-Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3' [ 28%] Built target test_interface [ 31%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -MF CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o.d -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/homopolymer.c make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3' [ 31%] Built target scrappie_objects make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/depend make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3' cd /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_static.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3' make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/build make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3' [ 34%] Linking C static library libscrappie.a /usr/bin/cmake -P CMakeFiles/scrappie_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_static.dir/link.txt --verbose=1 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3' cd /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build make[4]: Leaving directory 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-I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_events.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_events.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_events.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o 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CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_convolution.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ [ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_skeleton.c [ 60%] Building C object 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'/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' [ 5%] Building C object CMakeFiles/scrappie_objects.dir/src/layers.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/layers.c.o -MF CMakeFiles/scrappie_objects.dir/src/layers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/layers.c [ 7%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o [ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/event_detection.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong 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-I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -MF CMakeFiles/scrappie_objects.dir/src/event_detection.c.o.d -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/event_detection.c [ 13%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -MF CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o.d -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/nnfeatures.c [ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o [ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/networks.c.o -MF CMakeFiles/scrappie_objects.dir/src/networks.c.o.d -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/networks.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_common.c [ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_matrix.c [ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -MF CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o.d -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_seq_helpers.c [ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/util.c.o -MF CMakeFiles/scrappie_objects.dir/src/util.c.o.d -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/util.c [ 28%] Linking C executable test_interface /usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_interface.dir/src/test_interface.c.o -o test_interface make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' [ 31%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -MD -MT CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -MF CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o.d -o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/homopolymer.c [ 31%] Built target test_interface make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' [ 31%] Built target scrappie_objects make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/depend make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' cd /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/CMakeFiles/scrappie_static.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' make -f CMakeFiles/scrappie_static.dir/build.make CMakeFiles/scrappie_static.dir/build make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' [ 34%] Linking C static library libscrappie.a /usr/bin/cmake -P CMakeFiles/scrappie_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_static.dir/link.txt --verbose=1 /usr/bin/ar qc libscrappie.a CMakeFiles/scrappie_objects.dir/src/decode.c.o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o CMakeFiles/scrappie_objects.dir/src/layers.c.o CMakeFiles/scrappie_objects.dir/src/networks.c.o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o CMakeFiles/scrappie_objects.dir/src/util.c.o CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o /usr/bin/ranlib libscrappie.a make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' [ 34%] Built target scrappie_static make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/depend make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/depend make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' cd /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/CMakeFiles/scrappie.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' cd /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2 /build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/CMakeFiles/scrappie_unittest.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build make[4]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' [ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_util.c [ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.c [ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o [ 44%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o [ 47%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_map_to_sequence.c [ 50%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_convolution.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_raw.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_raw.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/11/include/stdint.h:9, from /usr/include/simde/simde-common.h:39, from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_matrix.h:6, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.h:4, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_util.c:6: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_test_runner.c [ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o [ 55%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o [ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/scrappie_util.c:4: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_events.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_events.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_events.c [ 60%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie.c.o -MF 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-g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_decoding.c [ 63%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp 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-I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_event_detection.c [ 71%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_matrix.c [ 73%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD 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-I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_seqmappy.c [ 84%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -MF 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-I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_help.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_help.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_help.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/fast5_interface.c.o -MF CMakeFiles/scrappie.dir/src/fast5_interface.c.o.d -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/fast5_interface.c [ 94%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_event_table.c [ 97%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd 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-lm -lcunit make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' [ 97%] Built target scrappie_unittest [100%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o.d -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/test/test_scrappie_decoding.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -I/build/scrappie-2rTbNr/scrappie-1.4.2/src/test -I/build/scrappie-2rTbNr/scrappie-1.4.2/src -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -MF CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o.d -o 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-I/build/scrappie-2rTbNr/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_subcommands.c /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_help.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_help.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_help.c [ 92%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -MF CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o.d -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/scrappie_event_table.c [ 94%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o /usr/bin/cc -I/build/scrappie-2rTbNr/scrappie-1.4.2/build_plain/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -MD -MT CMakeFiles/scrappie.dir/src/fast5_interface.c.o -MF CMakeFiles/scrappie.dir/src/fast5_interface.c.o.d -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /build/scrappie-2rTbNr/scrappie-1.4.2/src/fast5_interface.c [ 97%] Linking C executable scrappie_unittest /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_plain' [ 97%] Built target scrappie_unittest [100%] Linking C executable scrappie /usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/scrappie-2rTbNr/scrappie-1.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm make[4]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_plain' [100%] Built target scrappie make[3]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_plain' /usr/bin/cmake -E cmake_progress_start /build/scrappie-2rTbNr/scrappie-1.4.2/build_plain/CMakeFiles 0 make[2]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_plain' make[1]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake rm -f -- debian/scrappie.substvars rm -fr -- debian/.debhelper/generated/scrappie/ debian/scrappie/ debian/tmp/ rm -f debian/scrappie.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2' dh_install debian/bin/simd-dispatch /usr/lib// install -d debian/scrappie//usr/lib// cp --reflink=auto -a ./debian/bin/simd-dispatch debian/scrappie//usr/lib/// install -d debian/.debhelper/generated/scrappie for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \ dh_auto_install --builddirectory build_${SIMD} ; \ done cd build_avx2 && make -j10 install DESTDIR=/build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' /usr/bin/cmake -S/build/scrappie-2rTbNr/scrappie-1.4.2 -B/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx2' cd build_avx && make -j10 install DESTDIR=/build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' /usr/bin/cmake -S/build/scrappie-2rTbNr/scrappie-1.4.2 -B/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_avx' cd build_sse4.1 && make -j10 install DESTDIR=/build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse4.1' /usr/bin/cmake -S/build/scrappie-2rTbNr/scrappie-1.4.2 -B/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse4.1' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse4.1' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse4.1' cd build_ssse3 && make -j10 install DESTDIR=/build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3' /usr/bin/cmake -S/build/scrappie-2rTbNr/scrappie-1.4.2 -B/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_ssse3' cd build_sse3 && make -j10 install DESTDIR=/build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3' /usr/bin/cmake -S/build/scrappie-2rTbNr/scrappie-1.4.2 -B/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse3' cd build_sse2 && make -j10 install DESTDIR=/build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' /usr/bin/cmake -S/build/scrappie-2rTbNr/scrappie-1.4.2 -B/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/bin/scrappie -- Installing: /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/lib/libscrappie.a make[2]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2/build_sse2' dh_install debian/bin/simd-dispatch /usr/lib/ cp --reflink=auto -a ./debian/bin/simd-dispatch debian/scrappie//usr/lib// dh_install build_*/scrappie-* /usr/bin// cp --reflink=auto -a ./build_avx/scrappie-avx ./build_avx2/scrappie-avx2 ./build_plain/scrappie-plain ./build_sse2/scrappie-sse2 ./build_sse3/scrappie-sse3 ./build_sse4.1/scrappie-sse4.1 ./build_ssse3/scrappie-ssse3 debian/scrappie//usr/bin/// cd /build/scrappie-2rTbNr/scrappie-1.4.2/debian/scrappie/usr/bin && \ rm -rf scrappie && ln -s ../lib//simd-dispatch scrappie make[1]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2' dh_installdocs -a -O--buildsystem=cmake install -d debian/scrappie/usr/share/doc/scrappie install -p -m0644 debian/copyright debian/scrappie/usr/share/doc/scrappie/copyright dh_installchangelogs -a -O--buildsystem=cmake dh_installman -a -O--buildsystem=cmake install -d debian/scrappie/usr/share/man/man1/ install -p -m0644 ./debian/scrappie.1 debian/scrappie/usr/share/man/man1/scrappie.1 man-recode --to-code UTF-8 --suffix .dh-new debian/scrappie/usr/share/man/man1/scrappie.1 mv debian/scrappie/usr/share/man/man1/scrappie.1.dh-new debian/scrappie/usr/share/man/man1/scrappie.1 chmod 0644 -- debian/scrappie/usr/share/man/man1/scrappie.1 dh_installsystemduser -a -O--buildsystem=cmake dh_lintian -a -O--buildsystem=cmake install -d debian/scrappie/usr/share/lintian/overrides install -p -m0644 debian/lintian-overrides debian/scrappie/usr/share/lintian/overrides/scrappie dh_perl -a -O--buildsystem=cmake dh_link -a -O--buildsystem=cmake rm -f debian/scrappie/usr/bin/scrappie ln -s ../lib/simd-dispatch debian/scrappie/usr/bin/scrappie dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake cd debian/scrappie chmod a-x usr/share/doc/scrappie/changelog.Debian usr/share/doc/scrappie/changelog.Debian.amd64 usr/share/man/man1/scrappie.1 gzip -9nf usr/share/doc/scrappie/changelog.Debian usr/share/doc/scrappie/changelog.Debian.amd64 usr/share/man/man1/scrappie.1 cd '/build/scrappie-2rTbNr/scrappie-1.4.2' dh_fixperms -a -O--buildsystem=cmake find debian/scrappie ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/scrappie/usr/share/doc -type f -a -true -a ! -regex 'debian/scrappie/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/scrappie/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/scrappie/usr/share/man debian/scrappie/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/scrappie -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/scrappie/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/scrappie/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake install -d debian/scrappie/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/scrappie/usr/lib/debug/.dwz/x86_64-linux-gnu/scrappie.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/scrappie.debug -- debian/scrappie/usr/bin/scrappie-avx debian/scrappie/usr/bin/scrappie-avx2 debian/scrappie/usr/bin/scrappie-plain debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-sse3 debian/scrappie/usr/bin/scrappie-sse4.1 debian/scrappie/usr/bin/scrappie-ssse3 objcopy --compress-debug-sections debian/scrappie/usr/lib/debug/.dwz/x86_64-linux-gnu/scrappie.debug dh_strip -a -O--buildsystem=cmake install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f5 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-avx debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f5/cc68c5a99d61897333828a79af78261e3ec0e8.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f5/cc68c5a99d61897333828a79af78261e3ec0e8.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-avx objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/f5/cc68c5a99d61897333828a79af78261e3ec0e8.debug debian/scrappie/usr/bin/scrappie-avx install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-avx2 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/db/45f1abceb4cdf92ef5580486921a150e762031.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/db/45f1abceb4cdf92ef5580486921a150e762031.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-avx2 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/db/45f1abceb4cdf92ef5580486921a150e762031.debug debian/scrappie/usr/bin/scrappie-avx2 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/79 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-plain debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/79/c93c4d80d05c66d70614bbdbc5cf67a99b1e61.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/79/c93c4d80d05c66d70614bbdbc5cf67a99b1e61.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-plain objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/79/c93c4d80d05c66d70614bbdbc5cf67a99b1e61.debug debian/scrappie/usr/bin/scrappie-plain install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/1a objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse2 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/1a/7cfea7da7f9ab30dccc6d6fe63bee750d8ee31.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/1a/7cfea7da7f9ab30dccc6d6fe63bee750d8ee31.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse2 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/1a/7cfea7da7f9ab30dccc6d6fe63bee750d8ee31.debug debian/scrappie/usr/bin/scrappie-sse2 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/27 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/27/bbbd1b0ddd62fad7c133eba45ca311df934115.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/27/bbbd1b0ddd62fad7c133eba45ca311df934115.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse3 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/27/bbbd1b0ddd62fad7c133eba45ca311df934115.debug debian/scrappie/usr/bin/scrappie-sse3 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d5 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-sse4.1 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d5/115754505d95de8bc338faa95f81166423f802.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d5/115754505d95de8bc338faa95f81166423f802.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-sse4.1 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d5/115754505d95de8bc338faa95f81166423f802.debug debian/scrappie/usr/bin/scrappie-sse4.1 install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/97 objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie-ssse3 debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/97/f85a0c6b48e89a239693f1dbf04353b77edb55.debug chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/97/f85a0c6b48e89a239693f1dbf04353b77edb55.debug strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie-ssse3 objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/97/f85a0c6b48e89a239693f1dbf04353b77edb55.debug debian/scrappie/usr/bin/scrappie-ssse3 strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/scrappie/usr/lib/libscrappie.a install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/scrappie/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/scrappie/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/scrappie/usr/lib/debug install -d debian/.debhelper/scrappie/dbgsym-root/usr/share/doc ln -s scrappie debian/.debhelper/scrappie/dbgsym-root/usr/share/doc/scrappie-dbgsym dh_makeshlibs -a -O--buildsystem=cmake rm -f debian/scrappie/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -d debian/scrappie/DEBIAN dpkg-shlibdeps -Tdebian/scrappie.substvars debian/scrappie/usr/bin/scrappie-avx debian/scrappie/usr/bin/scrappie-avx2 debian/scrappie/usr/bin/scrappie-plain debian/scrappie/usr/bin/scrappie-sse2 debian/scrappie/usr/bin/scrappie-sse3 debian/scrappie/usr/bin/scrappie-sse4.1 debian/scrappie/usr/bin/scrappie-ssse3 dh_installdeb -a -O--buildsystem=cmake rm -f debian/scrappie.debhelper.log debian/rules override_dh_gencontrol make[1]: Entering directory '/build/scrappie-2rTbNr/scrappie-1.4.2' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-6), " echo misc:Depends= >> debian/scrappie.substvars echo misc:Pre-Depends= >> debian/scrappie.substvars install -d debian/.debhelper/scrappie/dbgsym-root/DEBIAN dpkg-gencontrol -pscrappie -ldebian/changelog -Tdebian/scrappie.substvars -Pdebian/.debhelper/scrappie/dbgsym-root "-Vsimde:Built-Using=simde (= 0.7.2-6), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=scrappie-dbgsym "-DDepends=scrappie (= \${binary:Version})" "-DDescription=debug symbols for scrappie" "-DBuild-Ids=1a7cfea7da7f9ab30dccc6d6fe63bee750d8ee31 27bbbd1b0ddd62fad7c133eba45ca311df934115 79c93c4d80d05c66d70614bbdbc5cf67a99b1e61 97f85a0c6b48e89a239693f1dbf04353b77edb55 d5115754505d95de8bc338faa95f81166423f802 db45f1abceb4cdf92ef5580486921a150e762031 f5cc68c5a99d61897333828a79af78261e3ec0e8" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/DEBIAN/control dpkg-gencontrol -pscrappie -ldebian/changelog -Tdebian/scrappie.substvars -Pdebian/scrappie "-Vsimde:Built-Using=simde (= 0.7.2-6), " chmod 0644 -- debian/scrappie/DEBIAN/control make[1]: Leaving directory '/build/scrappie-2rTbNr/scrappie-1.4.2' dh_md5sums -a -O--buildsystem=cmake cd debian/scrappie >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/scrappie/DEBIAN/md5sums cd debian/.debhelper/scrappie/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=cmake dpkg-deb --root-owner-group --build debian/scrappie .. dpkg-deb --root-owner-group --build debian/.debhelper/scrappie/dbgsym-root .. dpkg-deb: building package 'scrappie' in '../scrappie_1.4.2-8+b1_amd64.deb'. dpkg-deb: building package 'scrappie-dbgsym' in '../scrappie-dbgsym_1.4.2-8+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../scrappie_1.4.2-8+b1_amd64.buildinfo dpkg-genchanges --build=any -O../scrappie_1.4.2-8+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/scrappie-2rTbNr /tmp/scrappie-1.4.2-8+b1dem469g3 I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.QgHx1NVNVx... I: success in 469.4680 seconds md5: scrappie-dbgsym_1.4.2-8+b1_amd64.deb: OK md5: scrappie_1.4.2-8+b1_amd64.deb: OK sha1: scrappie-dbgsym_1.4.2-8+b1_amd64.deb: OK sha1: scrappie_1.4.2-8+b1_amd64.deb: OK sha256: scrappie-dbgsym_1.4.2-8+b1_amd64.deb: OK sha256: scrappie_1.4.2-8+b1_amd64.deb: OK Checksums: OK