Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/s/sambamba/sambamba_0.8.2+dfsg-2+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/sambamba-0.8.2+dfsg-2+b13os_dwnx/sambamba_0.8.2+dfsg-2+b1_amd64.buildinfo Get source package info: sambamba=0.8.2+dfsg-2 Source URL: http://snapshot.notset.fr/mr/package/sambamba/0.8.2+dfsg-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6 binutils=2.38-3 binutils-common=2.38-3 binutils-x86-64-linux-gnu=2.38-3 bsdextrautils=2.38-4 bsdutils=1:2.38-4 build-essential=12.9 bzip2=1.0.8-5 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.3.0-1 dash=0.5.11+git20210903+057cd650a4ed-8 debconf=1.5.79 debhelper=13.7.1 debianutils=5.7-0.1 default-d-compiler=0.6.5 dh-autoreconf=20 dh-dlang=0.6.5 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.7 dpkg-dev=1.21.7 dwz=0.14-1 file=1:5.41-4 findutils=4.9.0-3 g++=4:11.2.0-2 g++-11=11.3.0-1 gcc=4:11.2.0-2 gcc-11=11.3.0-1 gcc-11-base=11.3.0-1 gcc-12-base=12-20220319-1 gettext=0.21-6 gettext-base=0.21-6 grep=3.7-1 groff-base=1.22.4-8 gzip=1.12-1 hostname=3.23 init-system-helpers=1.62 intltool-debian=0.35.0+20060710.5 ldc=1:1.29.0-2 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.3.0-1 libatomic1=12-20220319-1 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libbinutils=2.38-3 libblkid1=2.38-4 libbrotli1=1.0.9-2+b3 libbsd0=0.11.6-1 libbz2-1.0=1.0.8-5 libbz2-dev=1.0.8-5 libc-bin=2.33-7 libc-dev-bin=2.33-7 libc6=2.33-7 libc6-dev=2.33-7 libcap-ng0=0.7.9-2.2+b2 libcap2=1:2.44-1 libcc1-0=12-20220319-1 libcom-err2=1.46.5-2 libcrypt-dev=1:4.4.27-1.1 libcrypt1=1:4.4.27-1.1 libctf-nobfd0=2.38-3 libctf0=2.38-3 libcurl3-gnutls=7.83.0-1 libcurl4-gnutls-dev=7.83.0-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.262 libdebhelper-perl=13.7.1 libdeflate-dev=1.10-2 libdeflate0=1.10-2 libdpkg-perl=1.21.7 libedit2=3.1-20210910-1 libelf1=0.186-1 libexpat1=2.4.8-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libgcc-11-dev=11.3.0-1 libgcc-s1=12-20220319-1 libgcrypt20=1.10.1-2 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libglib2.0-0=2.72.1-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.4-2 libgomp1=12-20220319-1 libgpg-error0=1.43-3 libgssapi-krb5-2=1.19.2-2+b1 libhogweed6=3.7.3-1 libhts-dev=1.13+ds-2 libhts3=1.13+ds-2 libhtscodecs2=1.2.1-1 libicu71=71.1-2 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=12-20220319-1 libk5crypto3=1.19.2-2+b1 libkeyutils1=1.6.1-3 libkrb5-3=1.19.2-2+b1 libkrb5support0=1.19.2-2+b1 libldap-2.5-0=2.5.11+dfsg-1 libllvm13=1:13.0.1-3+b2 liblsan0=12-20220319-1 liblz4-1=1.9.3-2 liblz4-dev=1.9.3-2 liblzma-dev=5.2.5-2.1 liblzma5=5.2.5-2.1 libmagic-mgc=1:5.41-4 libmagic1=1:5.41-4 libmd0=1.0.4-1 libmount1=2.38-4 libmpc3=1.2.1-2 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.3+20220423-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.1-1 libpam-modules=1.4.0-13 libpam-modules-bin=1.4.0-13 libpam-runtime=1.4.0-13 libpam0g=1.4.0-13 libpcre2-8-0=10.40-1 libpcre3=2:8.39-14 libperl5.34=5.34.0-4 libphobos2-ldc-shared-dev=1:1.29.0-2 libphobos2-ldc-shared99=1:1.29.0-2 libpipeline1=1.5.6-1 libpsl5=0.21.0-1.2 libpython3-stdlib=3.10.4-1 libpython3.10-minimal=3.10.4-3 libpython3.10-stdlib=3.10.4-3 libquadmath0=12-20220319-1 libreadline8=8.1.2-1.2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.28+dfsg-4 libsasl2-modules-db=2.1.28+dfsg-4 libseccomp2=2.5.4-1 libselinux1=3.3-1+b2 libsigsegv2=2.14-1 libsmartcols1=2.38-4 libsqlite3-0=3.38.2-1 libssh2-1=1.10.0-3 libssl-dev=1.1.1n-1 libssl1.1=1.1.1n-1 libstdc++-11-dev=11.3.0-1 libstdc++6=12-20220319-1 libsub-override-perl=0.09-2 libsystemd0=250.4-1 libtasn1-6=4.18.0-4 libtinfo6=6.3+20220423-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.7-3 libtsan0=11.3.0-1 libubsan1=12-20220319-1 libuchardet0=0.0.7-1 libudev1=250.4-1 libunistring2=1.0-1 libuuid1=2.38-4 libxml2=2.9.13+dfsg-1+b1 libz3-4=4.8.12-1+b1 libzstd1=1.5.2+dfsg-1 linux-libc-dev=5.17.3-1 login=1:4.11.1+dfsg1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3+b1 media-types=7.1.0 meson=0.62.1-1 ncurses-base=6.3+20220423-1 ncurses-bin=6.3+20220423-1 ninja-build=1.10.1-1 patch=2.7.6-7 perl=5.34.0-4 perl-base=5.34.0-4 perl-modules-5.34=5.34.0-4 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 python3=3.10.4-1 python3-distutils=3.9.12-1 python3-lib2to3=3.9.12-1 python3-minimal=3.10.4-1 python3-pkg-resources=59.6.0-1.2 python3-setuptools=59.6.0-1.2 python3.10=3.10.4-3 python3.10-minimal=3.10.4-3 readline-common=8.1.2-1.2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 shunit2=2.1.6-1.2 sysvinit-utils=3.03-1 tar=1.34+dfsg-1 util-linux=2.38-4 util-linux-extra=2.38-4 xz-utils=5.2.5-2.1 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220221T025413Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220221T025413Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220511T145217Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220428T025707Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d sambamba=0.8.2+dfsg-2 && mkdir -p /build/sambamba-f2H8Rl && dpkg-source --no-check -x /*.dsc /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg && cd /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg && { printf '%s' 'sambamba (0.8.2+dfsg-2+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild against libphobos2-ldc-shared99 -- amd64 / i386 Build Daemon (x86-csail-01) Fri, 29 Apr 2022 09:34:47 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/sambamba-f2H8Rl" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1651224887" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/sambamba-f2H8Rl /tmp/sambamba-0.8.2+dfsg-2+b13os_dwnx bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220428T025707Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.qIM0LqyYLm as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.qIM0LqyYLm Reading package lists... Building dependency tree... util-linux is already the newest version (2.38-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 135 kB of archives. After this operation, 406 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220428T025707Z unstable/main amd64 libfakeroot amd64 1.28-1 [48.2 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220428T025707Z unstable/main amd64 fakeroot amd64 1.28-1 [87.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 135 kB in 0s (1021 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4627 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.28-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.28-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.28-1_amd64.deb ... Unpacking fakeroot (1.28-1) ... Setting up libfakeroot:amd64 (1.28-1) ... Setting up fakeroot (1.28-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-7) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220221T025413Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220221T025413Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220511T145217Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20220428T025707Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.qIM0LqyYLm Get:1 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm InRelease [129 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220511T145217Z unstable InRelease [165 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20220428T025707Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main Sources [11.9 MB] Get:5 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main amd64 Packages [11.3 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20220511T145217Z unstable/main amd64 Packages Err:6 http://snapshot.notset.fr/archive/debian/20220511T145217Z unstable/main amd64 Packages 404 Not Found [IP: 10.13.0.253 80] Ign:6 http://snapshot.notset.fr/archive/debian/20220511T145217Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20220511T145217Z unstable/main amd64 Packages [12.4 MB] Fetched 35.9 MB in 30s (1215 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.qIM0LqyYLm I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d sambamba=0.8.2+dfsg-2 && mkdir -p /build/sambamba-f2H8Rl && dpkg-source --no-check -x /*.dsc /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg && cd /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg && { printf '%s' 'sambamba (0.8.2+dfsg-2+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild against libphobos2-ldc-shared99 -- amd64 / i386 Build Daemon (x86-csail-01) Fri, 29 Apr 2022 09:34:47 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/sambamba-f2H8Rl"' exec /tmp/mmdebstrap.qIM0LqyYLm Reading package lists... NOTICE: 'sambamba' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sambamba.git Please use: git clone https://salsa.debian.org/med-team/sambamba.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 460 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main sambamba 0.8.2+dfsg-2 (dsc) [2238 B] Get:2 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main sambamba 0.8.2+dfsg-2 (tar) [450 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220221T025413Z bookworm/main sambamba 0.8.2+dfsg-2 (diff) [7896 B] Fetched 460 kB in 0s (1163 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'sambamba_0.8.2+dfsg-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting sambamba in /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg dpkg-source: info: unpacking sambamba_0.8.2+dfsg.orig.tar.xz dpkg-source: info: unpacking sambamba_0.8.2+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1651224887" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.qIM0LqyYLm dpkg-buildpackage: info: source package sambamba dpkg-buildpackage: info: source version 0.8.2+dfsg-2+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-csail-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean mkdir -p obj-x86_64-linux-gnu dh clean --buildsystem=meson debian/rules override_dh_auto_clean make[1]: Entering directory '/build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg' dh_auto_clean rm -rf /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/output/ rm -f test.log make[1]: Leaving directory '/build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg' dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary-arch mkdir -p obj-x86_64-linux-gnu dh binary-arch --buildsystem=meson dh_update_autotools_config -a -O--buildsystem=meson dh_autoreconf -a -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg' dh_auto_configure -- -Doptimize_strong=true -Dcpp_link_args="-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu -Doptimize_strong=true "-Dcpp_link_args=-wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4" The Meson build system Version: 0.62.1 Source dir: /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg Build dir: /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/obj-x86_64-linux-gnu Build type: native build Project name: Sambamba Project version: 0.8.2 C compiler for the host machine: cc (gcc 11.3.0 "cc (Debian 11.3.0-1) 11.3.0") C linker for the host machine: cc ld.bfd 2.38 D compiler for the host machine: ldc2 (llvm 1.29.0 "LDC - the LLVM D compiler (1.29.0):") D linker for the host machine: ldc2 ld.bfd 2.38 Host machine cpu family: x86_64 Host machine cpu: x86_64 Found pkg-config: /usr/bin/pkg-config (0.29.2) Run-time dependency liblz4 found: YES 1.9.3 Run-time dependency zlib found: YES 1.2.11 Program ldc2 found: YES (/usr/bin/ldc2) Program mkdir found: YES (/bin/mkdir) WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in future releases of meson. See also: https://github.com/mesonbuild/meson/issues/9300 Program /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/test/test_suite.sh found: YES (/build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/test/test_suite.sh) Build targets in project: 1 Sambamba 0.8.2 User defined options buildtype : plain libdir : lib/x86_64-linux-gnu localstatedir : /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload cpp_link_args : -wi -L=-z -L=relro /usr/lib/x86_64-linux-gnu/libhts.a -L=-lz -L=-lcrypto -L=-lcurl -L=-llzma -L=-lbz2 -L=-ldeflate -L=-llz4 optimize_strong: true Found ninja-1.10.1 at /usr/bin/ninja make[1]: Leaving directory '/build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg' dh_auto_build -a -O--buildsystem=meson cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j10 -v [1/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_main.d.o.deps -of=sambamba.p/sambamba_main.d.o -c ../sambamba/main.d [2/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup2.d.o.deps -of=sambamba.p/sambamba_markdup2.d.o -c ../sambamba/markdup2.d [3/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_index.d.o.deps -of=sambamba.p/sambamba_index.d.o -c ../sambamba/index.d [4/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_fixbins.d.o.deps -of=sambamba.p/sambamba_fixbins.d.o -c ../sambamba/fixbins.d [5/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_file.d.o.deps -of=sambamba.p/sambamba_utils_common_file.d.o -c ../sambamba/utils/common/file.d [6/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_subsample.d.o.deps -of=sambamba.p/sambamba_subsample.d.o -c ../sambamba/subsample.d [7/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_intervaltree.d.o.deps -of=sambamba.p/sambamba_utils_common_intervaltree.d.o -c ../sambamba/utils/common/intervaltree.d [8/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_slice.d.o.deps -of=sambamba.p/sambamba_slice.d.o -c ../sambamba/slice.d [9/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_overwrite.d.o.deps -of=sambamba.p/sambamba_utils_common_overwrite.d.o -c ../sambamba/utils/common/overwrite.d [10/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_pratt_parser.d.o.deps -of=sambamba.p/sambamba_utils_common_pratt_parser.d.o -c ../sambamba/utils/common/pratt_parser.d [11/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_flagstat.d.o.deps -of=sambamba.p/sambamba_flagstat.d.o -c ../sambamba/flagstat.d [12/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi 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-makedeps=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o.deps -of=sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o -c ../sambamba/utils/view/alignmentrangeprocessor.d [16/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o.deps -of=sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o -c ../sambamba/utils/common/ldc_gc_workaround.d [17/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_tmpdir.d.o.deps -of=sambamba.p/sambamba_utils_common_tmpdir.d.o -c ../sambamba/utils/common/tmpdir.d [18/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD 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-enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_block.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_block.d.o -c ../BioD/bio/core/bgzf/block.d [23/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_constants.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_constants.d.o -c ../BioD/bio/core/bgzf/constants.d [24/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_compress.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_compress.d.o -c ../BioD/bio/core/bgzf/compress.d [25/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_progressbar.d.o.deps -of=sambamba.p/sambamba_utils_common_progressbar.d.o -c ../sambamba/utils/common/progressbar.d [26/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o.deps -of=sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o -c ../BioD/bio/core/bgzf/virtualoffset.d [27/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_call.d.o.deps -of=sambamba.p/BioD_bio_core_call.d.o -c ../BioD/bio/core/call.d [28/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_bgzf_outputstream.d.o.deps 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-makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o -c ../BioD/bio/std/experimental/hts/bam/header.d [49/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_core_utils_tmpfile.d.o.deps -of=sambamba.p/BioD_bio_core_utils_tmpfile.d.o -c ../BioD/bio/core/utils/tmpfile.d [50/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o -c ../BioD/bio/std/experimental/hts/bam/writer.d [51/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_filtering.d.o.deps -of=sambamba.p/sambamba_utils_common_filtering.d.o -c ../sambamba/utils/common/filtering.d [52/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_constants.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_constants.d.o -c ../BioD/bio/std/experimental/hts/constants.d [53/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_logger.d.o -c ../BioD/bio/std/experimental/hts/logger.d [54/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_markdup.d.o.deps -of=sambamba.p/sambamba_markdup.d.o -c ../sambamba/markdup.d [55/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o -c ../BioD/bio/std/experimental/hts/hashing.d [56/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_reads.d.o -c ../BioD/bio/std/experimental/hts/reads.d [57/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/_build_sambamba-f2H8Rl_sambamba-0.8.2+dfsg_obj-x86_64-linux-gnu_utils_ldc_version_info_.d.o.deps -of=sambamba.p/_build_sambamba-f2H8Rl_sambamba-0.8.2+dfsg_obj-x86_64-linux-gnu_utils_ldc_version_info_.d.o -c /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/obj-x86_64-linux-gnu/utils/ldc_version_info_.d [58/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_depth.d.o.deps -of=sambamba.p/sambamba_depth.d.o -c ../sambamba/depth.d ../BioD/bio/std/hts/bam/md/parse.d(49): Deprecation: returning `this._cached_front` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(49): perhaps annotate the function with `return` ../BioD/bio/std/hts/bam/md/parse.d(53): Deprecation: returning `this._cached_back` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(53): perhaps annotate the function with `return` [59/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o -c ../BioD/bio/std/experimental/hts/bgzf_writer.d [60/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fastq.d.o.deps -of=sambamba.p/BioD_bio_std_file_fastq.d.o -c ../BioD/bio/std/file/fastq.d [61/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o -c ../BioD/bio/std/experimental/hts/pileup.d [62/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_maf.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_maf.d.o -c ../BioD/bio/std/genotype/maf.d [63/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o -c ../BioD/bio/std/experimental/hts/unpack.d [64/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o -c ../BioD/bio/std/hts/bam/bai/bin.d [65/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o -c ../BioD/bio/std/hts/bam/abstractreader.d [66/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baifile.d.o -c ../BioD/bio/std/hts/bam/baifile.d [67/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o -c ../BioD/bio/std/hts/bam/baseinfo.d [68/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_cigar.d.o -c ../BioD/bio/std/hts/bam/cigar.d [69/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_constants.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_constants.d.o -c ../BioD/bio/std/hts/bam/constants.d [70/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o -c ../BioD/bio/std/experimental/hts/bgzf.d ../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: package bio.core.utils is not accessible here, perhaps add 'static import bio.core.utils;' ../BioD/bio/std/experimental/hts/bgzf.d(91): Deprecation: module bio.core.utils.zlib is not accessible here, perhaps add 'static import bio.core.utils.zlib;' [71/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_core.d.o -c ../BioD/bio/std/hts/bam/md/core.d [72/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o -c ../BioD/bio/std/hts/bam/md/parse.d ../BioD/bio/std/hts/bam/md/parse.d(49): Deprecation: returning `this._cached_front` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(49): perhaps annotate the function with `return` ../BioD/bio/std/hts/bam/md/parse.d(53): Deprecation: returning `this._cached_back` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(53): perhaps annotate the function with `return` [73/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o -c ../BioD/bio/std/hts/bam/md/reconstruct.d [74/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fai.d.o.deps -of=sambamba.p/BioD_bio_std_file_fai.d.o -c ../BioD/bio/std/file/fai.d [75/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o -c ../BioD/bio/std/experimental/hts/bam/reader.d [76/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_genotype_snp.d.o.deps -of=sambamba.p/BioD_bio_std_genotype_snp.d.o -c ../BioD/bio/std/genotype/snp.d [77/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_pileup.d.o -c ../BioD/bio/std/hts/bam/pileup.d [78/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o -c ../BioD/bio/std/hts/bam/bai/indexing.d [79/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_view.d.o.deps -of=sambamba.p/sambamba_view.d.o -c ../sambamba/view.d [80/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_readrange.d.o -c ../BioD/bio/std/hts/bam/readrange.d [81/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o -c ../BioD/bio/std/hts/bam/md/operation.d ../BioD/bio/std/hts/bam/md/operation.d(57): Deprecation: returning `this._match` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/operation.d(57): perhaps annotate the function with `return` ../BioD/bio/std/hts/bam/md/operation.d(72): Deprecation: returning `this._deletion` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/operation.d(72): perhaps annotate the function with `return` [82/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_region.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_region.d.o -c ../BioD/bio/std/hts/bam/region.d [83/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o -c ../BioD/bio/std/hts/bam/randomaccessmanager.d [84/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o -c ../BioD/bio/std/hts/bam/referenceinfo.d [85/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_file_fasta.d.o.deps -of=sambamba.p/BioD_bio_std_file_fasta.d.o -c ../BioD/bio/std/file/fasta.d [86/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_splitter.d.o -c ../BioD/bio/std/hts/bam/splitter.d [87/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_reference.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_reference.d.o -c ../BioD/bio/std/hts/bam/reference.d [88/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o -c ../BioD/bio/std/hts/bam/validation/samheader.d [89/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o -c ../BioD/bio/std/hts/iontorrent/flowindex.d [90/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_writer.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_writer.d.o -c ../BioD/bio/std/hts/bam/writer.d [91/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_pileup.d.o.deps -of=sambamba.p/sambamba_pileup.d.o -c ../sambamba/pileup.d ../BioD/bio/std/hts/bam/md/parse.d(49): Deprecation: returning `this._cached_front` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(49): perhaps annotate the function with `return` ../BioD/bio/std/hts/bam/md/parse.d(53): Deprecation: returning `this._cached_back` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(53): perhaps annotate the function with `return` [92/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/sambamba_utils_common_queryparser.d.o.deps -of=sambamba.p/sambamba_utils_common_queryparser.d.o -c ../sambamba/utils/common/queryparser.d [93/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o -c ../BioD/bio/std/hts/sam/utils/recordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [94/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o.deps -of=sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o -c ../BioD/bio/std/hts/iontorrent/flowcall.d [95/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o -c ../BioD/bio/std/hts/snpcallers/maq.d [96/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o.deps -of=sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o -c ../BioD/bio/std/hts/snpcallers/simple.d [97/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_multireader.d.o -c ../BioD/bio/std/hts/bam/multireader.d [98/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_array.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_array.d.o -c ../BioD/bio/std/hts/utils/array.d [99/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o -c ../BioD/bio/std/hts/sam/utils/fastrecordparser.d sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable sam_alignment.rl(52): Warning: statement is not reachable sam_alignment.rl(60): Warning: statement is not reachable sam_alignment.rl(69): Warning: statement is not reachable sam_alignment.rl(77): Warning: statement is not reachable sam_alignment.rl(83): Warning: statement is not reachable sam_alignment.rl(132): Warning: statement is not reachable sam_alignment.rl(164): Warning: statement is not reachable sam_alignment.rl(177): Warning: statement is not reachable sam_alignment.rl(189): Warning: statement is not reachable sam_alignment.rl(222): Warning: statement is not reachable sam_alignment.rl(252): Warning: statement is not reachable sam_alignment.rl(409): Warning: statement is not reachable sam_alignment.rl(51): Warning: statement is not reachable sam_alignment.rl(59): Warning: statement is not reachable sam_alignment.rl(68): Warning: statement is not reachable sam_alignment.rl(76): Warning: statement is not reachable sam_alignment.rl(82): Warning: statement is not reachable sam_alignment.rl(131): Warning: statement is not reachable sam_alignment.rl(163): Warning: statement is not reachable sam_alignment.rl(176): Warning: statement is not reachable sam_alignment.rl(188): Warning: statement is not reachable sam_alignment.rl(221): Warning: statement is not reachable sam_alignment.rl(250): Warning: statement is not reachable sam_alignment.rl(407): Warning: statement is not reachable [100/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_graph.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_graph.d.o -c ../BioD/bio/std/hts/utils/graph.d [101/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_block.d.o.deps -of=sambamba.p/BioD_bio_std_maf_block.d.o -c ../BioD/bio/std/maf/block.d [102/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_reader.d.o -c ../BioD/bio/std/hts/bam/reader.d [103/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_read.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_read.d.o -c ../BioD/bio/std/hts/bam/read.d ../BioD/bio/std/hts/bam/md/parse.d(49): Deprecation: returning `this._cached_front` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(49): perhaps annotate the function with `return` ../BioD/bio/std/hts/bam/md/parse.d(53): Deprecation: returning `this._cached_back` escapes a reference to parameter `this` ../BioD/bio/std/hts/bam/md/parse.d(53): perhaps annotate the function with `return` [104/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_thirdparty_msgpack.d.o.deps -of=sambamba.p/BioD_bio_std_hts_thirdparty_msgpack.d.o -c ../BioD/bio/std/hts/thirdparty/msgpack.d [105/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_reader.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_reader.d.o -c ../BioD/bio/std/hts/sam/reader.d [106/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_range_splitter.d.o.deps -of=sambamba.p/BioD_bio_std_range_splitter.d.o -c ../BioD/bio/std/range/splitter.d [107/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_constants.d.o.deps -of=sambamba.p/BioD_bio_std_sff_constants.d.o -c ../BioD/bio/std/sff/constants.d [108/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_read.d.o.deps -of=sambamba.p/BioD_bio_std_sff_read.d.o -c ../BioD/bio/std/sff/read.d [109/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_index.d.o.deps -of=sambamba.p/BioD_bio_std_sff_index.d.o -c ../BioD/bio/std/sff/index.d [110/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o.deps -of=sambamba.p/BioD_bio_std_sff_utils_roundup.d.o -c ../BioD/bio/std/sff/utils/roundup.d [111/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_value.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_value.d.o -c ../BioD/bio/std/hts/utils/value.d [112/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_reader.d.o.deps -of=sambamba.p/BioD_bio_std_sff_reader.d.o -c ../BioD/bio/std/sff/reader.d [113/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_readrange.d.o.deps -of=sambamba.p/BioD_bio_std_sff_readrange.d.o -c ../BioD/bio/std/sff/readrange.d [114/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o -c ../BioD/bio/std/hts/bam/tagvalue.d [115/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_doformat.d.o.deps -of=sambamba.p/BioD_contrib_undead_doformat.d.o -c ../BioD/contrib/undead/doformat.d ../BioD/contrib/undead/doformat.d(128): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/doformat.d(129): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/doformat.d(130): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/doformat.d(131): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(132): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(133): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead [116/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_reader.d.o.deps -of=sambamba.p/BioD_bio_std_maf_reader.d.o -c ../BioD/bio/std/maf/reader.d [117/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_utf.d.o.deps -of=sambamba.p/BioD_contrib_undead_utf.d.o -c ../BioD/contrib/undead/utf.d [118/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_sff_writer.d.o.deps -of=sambamba.p/BioD_bio_std_sff_writer.d.o -c ../BioD/bio/std/sff/writer.d [119/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_maf_parser.d.o.deps -of=sambamba.p/BioD_bio_std_maf_parser.d.o -c ../BioD/bio/std/maf/parser.d [120/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_cstream.d.o.deps -of=sambamba.p/BioD_contrib_undead_cstream.d.o -c ../BioD/contrib/undead/cstream.d [121/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_sam_header.d.o.deps -of=sambamba.p/BioD_bio_std_hts_sam_header.d.o -c ../BioD/bio/std/hts/sam/header.d [122/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_mergesort.d.o.deps -of=sambamba.p/thirdparty_mergesort.d.o -c ../thirdparty/mergesort.d [123/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/thirdparty_unstablesort.d.o.deps -of=sambamba.p/thirdparty_unstablesort.d.o -c ../thirdparty/unstablesort.d [124/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_version_.d.o.deps -of=sambamba.p/utils_version_.d.o -c ../utils/version_.d [125/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_internal_file.d.o.deps -of=sambamba.p/BioD_contrib_undead_internal_file.d.o -c ../BioD/contrib/undead/internal/file.d [126/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_strip_bcf_header.d.o.deps -of=sambamba.p/utils_strip_bcf_header.d.o -c ../utils/strip_bcf_header.d [127/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/utils_lz4.d.o.deps -of=sambamba.p/utils_lz4.d.o -c ../utils/lz4.d [128/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o.deps -of=sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o -c ../BioD/bio/std/hts/bam/validation/alignment.d [129/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_contrib_undead_stream.d.o.deps -of=sambamba.p/BioD_contrib_undead_stream.d.o -c ../BioD/contrib/undead/stream.d ../BioD/contrib/undead/stream.d(450): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(451): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(452): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(453): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(454): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(455): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(1116): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(1117): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(1118): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(1119): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(1120): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(1121): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(494): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/doformat.d(449): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/doformat.d(447): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(2472): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(2473): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(2474): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(2475): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(2476): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(2477): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead ../BioD/contrib/undead/stream.d(2527): Deprecation: use of imaginary type `ifloat` is deprecated, use `float` instead ../BioD/contrib/undead/stream.d(2528): Deprecation: use of imaginary type `idouble` is deprecated, use `double` instead ../BioD/contrib/undead/stream.d(2529): Deprecation: use of imaginary type `ireal` is deprecated, use `real` instead ../BioD/contrib/undead/stream.d(2530): Deprecation: use of complex type `cfloat` is deprecated, use `std.complex.Complex!(float)` instead ../BioD/contrib/undead/stream.d(2531): Deprecation: use of complex type `cdouble` is deprecated, use `std.complex.Complex!(double)` instead ../BioD/contrib/undead/stream.d(2532): Deprecation: use of complex type `creal` is deprecated, use `std.complex.Complex!(real)` instead [130/131] ldc2 -I=sambamba.p -I=. -I=.. -I=../BioD/ -enable-color -wi -O -g -release -wi -O3 -release -enable-inlining -boundscheck=off -J../ -J. -J../BioD -JBioD -makedeps=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o.deps -of=sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o -c ../BioD/bio/std/hts/utils/samheadermerger.d [131/131] ldc2 -of=sambamba sambamba.p/sambamba_main.d.o sambamba.p/sambamba_depth.d.o sambamba.p/sambamba_fixbins.d.o sambamba.p/sambamba_flagstat.d.o sambamba.p/sambamba_index.d.o sambamba.p/sambamba_markdup2.d.o sambamba.p/sambamba_markdup.d.o sambamba.p/sambamba_merge.d.o sambamba.p/sambamba_pileup.d.o sambamba.p/sambamba_slice.d.o sambamba.p/sambamba_sort.d.o sambamba.p/sambamba_subsample.d.o sambamba.p/sambamba_utils_common_bed.d.o sambamba.p/sambamba_utils_common_file.d.o sambamba.p/sambamba_utils_common_filtering.d.o sambamba.p/sambamba_utils_common_intervaltree.d.o sambamba.p/sambamba_utils_common_ldc_gc_workaround.d.o sambamba.p/sambamba_utils_common_overwrite.d.o sambamba.p/sambamba_utils_common_pratt_parser.d.o sambamba.p/sambamba_utils_common_progressbar.d.o sambamba.p/sambamba_utils_common_queryparser.d.o sambamba.p/sambamba_utils_common_readstorage.d.o sambamba.p/sambamba_utils_common_tmpdir.d.o sambamba.p/sambamba_utils_view_alignmentrangeprocessor.d.o sambamba.p/sambamba_utils_view_headerserializer.d.o sambamba.p/sambamba_validate.d.o sambamba.p/sambamba_view.d.o sambamba.p/BioD_bio_core_base.d.o sambamba.p/BioD_bio_core_bgzf_block.d.o sambamba.p/BioD_bio_core_bgzf_chunk.d.o sambamba.p/BioD_bio_core_bgzf_compress.d.o sambamba.p/BioD_bio_core_bgzf_constants.d.o sambamba.p/BioD_bio_core_bgzf_inputstream.d.o sambamba.p/BioD_bio_core_bgzf_outputstream.d.o sambamba.p/BioD_bio_core_bgzf_virtualoffset.d.o sambamba.p/BioD_bio_core_call.d.o sambamba.p/BioD_bio_core_decompress.d.o sambamba.p/BioD_bio_core_genotype.d.o sambamba.p/BioD_bio_core_kmer.d.o sambamba.p/BioD_bio_core_region.d.o sambamba.p/BioD_bio_core_sequence.d.o sambamba.p/BioD_bio_core_tinymap.d.o sambamba.p/BioD_bio_core_utils_algo.d.o sambamba.p/BioD_bio_core_utils_bylinefast.d.o sambamba.p/BioD_bio_core_utils_exception.d.o sambamba.p/BioD_bio_core_utils_format.d.o sambamba.p/BioD_bio_core_utils_memoize.d.o sambamba.p/BioD_bio_core_utils_outbuffer.d.o sambamba.p/BioD_bio_core_utils_range.d.o sambamba.p/BioD_bio_core_utils_roundbuf.d.o sambamba.p/BioD_bio_core_utils_stream.d.o sambamba.p/BioD_bio_core_utils_switchendianness.d.o sambamba.p/BioD_bio_core_utils_tmpfile.d.o sambamba.p/BioD_bio_core_utils_zlib.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_header.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_reader.d.o sambamba.p/BioD_bio_std_experimental_hts_bam_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf.d.o sambamba.p/BioD_bio_std_experimental_hts_bgzf_writer.d.o sambamba.p/BioD_bio_std_experimental_hts_constants.d.o sambamba.p/BioD_bio_std_experimental_hts_hashing.d.o sambamba.p/BioD_bio_std_experimental_hts_logger.d.o sambamba.p/BioD_bio_std_experimental_hts_pileup.d.o sambamba.p/BioD_bio_std_experimental_hts_reads.d.o sambamba.p/BioD_bio_std_experimental_hts_unpack.d.o sambamba.p/BioD_bio_std_file_fai.d.o sambamba.p/BioD_bio_std_file_fasta.d.o sambamba.p/BioD_bio_std_file_fastq.d.o sambamba.p/BioD_bio_std_genotype_maf.d.o sambamba.p/BioD_bio_std_genotype_snp.d.o sambamba.p/BioD_bio_std_hts_bam_abstractreader.d.o sambamba.p/BioD_bio_std_hts_bam_bai_bin.d.o sambamba.p/BioD_bio_std_hts_bam_baifile.d.o sambamba.p/BioD_bio_std_hts_bam_bai_indexing.d.o sambamba.p/BioD_bio_std_hts_bam_baseinfo.d.o sambamba.p/BioD_bio_std_hts_bam_cigar.d.o sambamba.p/BioD_bio_std_hts_bam_constants.d.o sambamba.p/BioD_bio_std_hts_bam_md_core.d.o sambamba.p/BioD_bio_std_hts_bam_md_operation.d.o sambamba.p/BioD_bio_std_hts_bam_md_parse.d.o sambamba.p/BioD_bio_std_hts_bam_md_reconstruct.d.o sambamba.p/BioD_bio_std_hts_bam_multireader.d.o sambamba.p/BioD_bio_std_hts_bam_pileup.d.o sambamba.p/BioD_bio_std_hts_bam_randomaccessmanager.d.o sambamba.p/BioD_bio_std_hts_bam_read.d.o sambamba.p/BioD_bio_std_hts_bam_reader.d.o sambamba.p/BioD_bio_std_hts_bam_readrange.d.o sambamba.p/BioD_bio_std_hts_bam_reference.d.o sambamba.p/BioD_bio_std_hts_bam_referenceinfo.d.o sambamba.p/BioD_bio_std_hts_bam_region.d.o sambamba.p/BioD_bio_std_hts_bam_splitter.d.o sambamba.p/BioD_bio_std_hts_bam_tagvalue.d.o sambamba.p/BioD_bio_std_hts_bam_validation_alignment.d.o sambamba.p/BioD_bio_std_hts_bam_validation_samheader.d.o sambamba.p/BioD_bio_std_hts_bam_writer.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowcall.d.o sambamba.p/BioD_bio_std_hts_iontorrent_flowindex.d.o sambamba.p/BioD_bio_std_hts_sam_header.d.o sambamba.p/BioD_bio_std_hts_sam_reader.d.o sambamba.p/BioD_bio_std_hts_sam_utils_fastrecordparser.d.o sambamba.p/BioD_bio_std_hts_sam_utils_recordparser.d.o sambamba.p/BioD_bio_std_hts_snpcallers_maq.d.o sambamba.p/BioD_bio_std_hts_snpcallers_simple.d.o sambamba.p/BioD_bio_std_hts_thirdparty_msgpack.d.o sambamba.p/BioD_bio_std_hts_utils_array.d.o sambamba.p/BioD_bio_std_hts_utils_graph.d.o sambamba.p/BioD_bio_std_hts_utils_samheadermerger.d.o sambamba.p/BioD_bio_std_hts_utils_value.d.o sambamba.p/BioD_bio_std_maf_block.d.o sambamba.p/BioD_bio_std_maf_parser.d.o sambamba.p/BioD_bio_std_maf_reader.d.o sambamba.p/BioD_bio_std_range_splitter.d.o sambamba.p/BioD_bio_std_sff_constants.d.o sambamba.p/BioD_bio_std_sff_index.d.o sambamba.p/BioD_bio_std_sff_read.d.o sambamba.p/BioD_bio_std_sff_reader.d.o sambamba.p/BioD_bio_std_sff_readrange.d.o sambamba.p/BioD_bio_std_sff_utils_roundup.d.o sambamba.p/BioD_bio_std_sff_writer.d.o sambamba.p/BioD_contrib_undead_cstream.d.o sambamba.p/BioD_contrib_undead_doformat.d.o sambamba.p/BioD_contrib_undead_internal_file.d.o sambamba.p/BioD_contrib_undead_stream.d.o sambamba.p/BioD_contrib_undead_utf.d.o sambamba.p/utils_lz4.d.o sambamba.p/utils_strip_bcf_header.d.o sambamba.p/utils_version_.d.o sambamba.p/thirdparty_mergesort.d.o sambamba.p/thirdparty_unstablesort.d.o sambamba.p/_build_sambamba-f2H8Rl_sambamba-0.8.2+dfsg_obj-x86_64-linux-gnu_utils_ldc_version_info_.d.o -L=-rpath -L=/usr/lib/x86_64-linux-gnu:/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L=-rpath-link -L=/usr/lib/x86_64-linux-gnu -L=-rpath-link -L=/usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu -L=--allow-shlib-undefined -link-defaultlib-shared -L=-z -L=relro -O -g -release -wi /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/gcc/x86_64-linux-gnu/11/../../../x86_64-linux-gnu/liblz4.so create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=meson dh_prep -a -O--buildsystem=meson dh_auto_install --destdir=debian/sambamba/ -a -O--buildsystem=meson cd obj-x86_64-linux-gnu && DESTDIR=/build/sambamba-f2H8Rl/sambamba-0.8.2\+dfsg/debian/sambamba LC_ALL=C.UTF-8 ninja install [0/1] Installing files. Installing sambamba to /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/debian/sambamba/usr/bin Installing /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/man/sambamba.1 to /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/man/sambamba-flagstat.1 to /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/man/sambamba-index.1 to /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/man/sambamba-markdup.1 to /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/man/sambamba-merge.1 to /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/man/sambamba-pileup.1 to /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/man/sambamba-slice.1 to /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/man/sambamba-sort.1 to /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/man/sambamba-view.1 to /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/debian/sambamba/usr/share/man/man1 Installing /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/etc/bash_completion.d/sambamba to /build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg/debian/sambamba/usr/share/bash-completion/completions dh_installdocs -a -O--buildsystem=meson dh_installchangelogs -a -O--buildsystem=meson dh_installman -a -O--buildsystem=meson dh_installsystemduser -a -O--buildsystem=meson dh_perl -a -O--buildsystem=meson dh_link -a -O--buildsystem=meson dh_strip_nondeterminism -a -O--buildsystem=meson dh_compress -a -O--buildsystem=meson dh_fixperms -a -O--buildsystem=meson debian/rules override_dh_missing make[1]: Entering directory '/build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg' dh_missing --fail-missing make[1]: Leaving directory '/build/sambamba-f2H8Rl/sambamba-0.8.2+dfsg' dh_dwz -a -O--buildsystem=meson dh_strip -a -O--buildsystem=meson dh_makeshlibs -a -O--buildsystem=meson dh_shlibdeps -a -O--buildsystem=meson dh_installdeb -a -O--buildsystem=meson dh_gencontrol -a -O--buildsystem=meson dh_md5sums -a -O--buildsystem=meson dh_builddeb -a -O--buildsystem=meson dpkg-deb: building package 'sambamba-dbgsym' in '../sambamba-dbgsym_0.8.2+dfsg-2+b1_amd64.deb'. dpkg-deb: building package 'sambamba' in '../sambamba_0.8.2+dfsg-2+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../sambamba_0.8.2+dfsg-2+b1_amd64.buildinfo dpkg-genchanges --build=any -O../sambamba_0.8.2+dfsg-2+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/sambamba-f2H8Rl /tmp/sambamba-0.8.2+dfsg-2+b13os_dwnx I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.qIM0LqyYLm... I: success in 399.2996 seconds md5: sambamba-dbgsym_0.8.2+dfsg-2+b1_amd64.deb: OK md5: sambamba_0.8.2+dfsg-2+b1_amd64.deb: OK sha1: sambamba-dbgsym_0.8.2+dfsg-2+b1_amd64.deb: OK sha1: sambamba_0.8.2+dfsg-2+b1_amd64.deb: OK sha256: sambamba-dbgsym_0.8.2+dfsg-2+b1_amd64.deb: OK sha256: sambamba_0.8.2+dfsg-2+b1_amd64.deb: OK Checksums: OK