Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/r/ray/ray_2.3.1-7_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/ray-2.3.1-7mquubkkj/ray_2.3.1-7_amd64.buildinfo Get source package info: ray=2.3.1-7 Source URL: http://snapshot.notset.fr/mr/package/ray/2.3.1-7/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 autoconf=2.69-11 automake=1:1.16.1-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.46 bash=5.0-5 binutils=2.33.1-4 binutils-common=2.33.1-4 binutils-x86-64-linux-gnu=2.33.1-4 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.8 bzip2=1.0.8-2 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.2.1-21 dash=0.5.10.2-6 debconf=1.5.73 debhelper=12.7.1 debianutils=4.9 dh-autoreconf=19 dh-strip-nondeterminism=1.6.3-1 diffutils=1:3.7-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-4 fdisk=2.34-0.1 file=1:5.37-6 findutils=4.7.0-1 g++=4:9.2.1-3.1 g++-9=9.2.1-21 gcc=4:9.2.1-3.1 gcc-9=9.2.1-21 gcc-9-base=9.2.1-21 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gfortran-9=9.2.1-21 grep=3.3-1 groff-base=1.22.4-3 gzip=1.9-3+b1 hostname=3.23 ibverbs-providers=26.0-2 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-5 libarchive-zip-perl=1.67-1 libasan5=9.2.1-21 libatomic1=9.2.1-21 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-2 libaudit1=1:2.8.5-2+b1 libbinutils=2.33.1-4 libblkid1=2.34-0.1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libbz2-dev=1.0.8-2 libc-bin=2.29-3 libc-dev-bin=2.29-3 libc6=2.29-3 libc6-dev=2.29-3 libcap-ng0=0.7.9-2.1+b1 libcc1-0=9.2.1-21 libcom-err2=1.45.4-1 libcroco3=0.6.13-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.250 libdebhelper-perl=12.7.1 libdpkg-perl=1.19.7 libedit2=3.1-20191025-1 libelf1=0.176-1.1 libevent-2.1-7=2.1.11-stable-1 libevent-core-2.1-7=2.1.11-stable-1 libevent-dev=2.1.11-stable-1 libevent-extra-2.1-7=2.1.11-stable-1 libevent-openssl-2.1-7=2.1.11-stable-1 libevent-pthreads-2.1-7=2.1.11-stable-1 libfabric1=1.6.2-3+b1 libfdisk1=2.34-0.1 libffi6=3.2.1-9 libfile-stripnondeterminism-perl=1.6.3-1 libgcc-9-dev=9.2.1-21 libgcc1=1:9.2.1-21 libgcrypt20=1.8.5-3 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgfortran-9-dev=9.2.1-21 libgfortran5=9.2.1-21 libglib2.0-0=2.62.3-1 libgmp10=2:6.1.2+dfsg-4 libgomp1=9.2.1-21 libgpg-error0=1.36-7 libgssapi-krb5-2=1.17-6 libhwloc-dev=2.1.0+dfsg-2 libhwloc-plugins=2.1.0+dfsg-2 libhwloc15=2.1.0+dfsg-2 libibverbs-dev=26.0-2 libibverbs1=26.0-2 libicu63=63.2-2 libisl22=0.22-2 libitm1=9.2.1-21 libk5crypto3=1.17-6 libkeyutils1=1.6-6 libkrb5-3=1.17-6 libkrb5support0=1.17-6 liblsan0=9.2.1-21 libltdl-dev=2.4.6-11 libltdl7=2.4.6-11 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.37-6 libmagic1=1:5.37-6 libmount1=2.34-0.1 libmpc3=1.1.0-1 libmpfr6=4.0.2-1 libncursesw6=6.1+20191019-1 libnl-3-200=3.4.0-1+b1 libnl-3-dev=3.4.0-1+b1 libnl-route-3-200=3.4.0-1+b1 libnl-route-3-dev=3.4.0-1+b1 libnuma-dev=2.0.12-1+b1 libnuma1=2.0.12-1+b1 libopenmpi-dev=4.0.2-4+b1 libopenmpi3=4.0.2-4+b1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpciaccess0=0.14-1 libpcre2-8-0=10.34-1 libpcre3=2:8.39-12+b1 libperl5.30=5.30.0-9 libpipeline1=1.5.1-2 libpmix2=3.1.4-1+b1 libpsm-infinipath1=3.3+20.604758e7-6+b1 libpsm2-2=11.2.86-1 libquadmath0=9.2.1-21 librdmacm1=26.0-2 libseccomp2=2.4.2-2 libselinux1=2.9-3+b1 libsemanage-common=2.9-3 libsemanage1=2.9-3+b1 libsepol1=2.9-2+b2 libsigsegv2=2.12-2 libsmartcols1=2.34-0.1 libssl1.1=1.1.1d-2 libstdc++-9-dev=9.2.1-21 libstdc++6=9.2.1-21 libsub-override-perl=0.09-2 libsystemd0=243-9 libtinfo6=6.1+20191019-1 libtool=2.4.6-11 libtsan0=9.2.1-21 libubsan1=9.2.1-21 libuchardet0=0.0.6-3 libudev1=243-9 libunistring2=0.9.10-2 libuuid1=2.34-0.1 libxml2=2.9.4+dfsg1-8 linux-libc-dev=5.3.9-3 login=1:4.7-2 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-1.2 man-db=2.9.0-1 mawk=1.3.3-17+b3 mpi-default-dev=1.13 ncurses-base=6.1+20191019-1 ncurses-bin=6.1+20191019-1 ocl-icd-libopencl1=2.2.12-2 openmpi-bin=4.0.2-4+b1 openmpi-common=4.0.2-4 openssh-client=1:8.1p1-1 passwd=1:4.7-2 patch=2.7.6-6 perl=5.30.0-9 perl-base=5.30.0-9 perl-modules-5.30=5.30.0-9 po-debconf=1.0.21 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-1 tar=1.30+dfsg-6+b1 util-linux=2.34-0.1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-1+b1 zlib1g-dev=1:1.2.11.dfsg-1+b1 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20191202T160249Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d ray=2.3.1-7 && mkdir -p /build/ray-znEUyx && dpkg-source --no-check -x /*.dsc /build/ray-znEUyx/ray-2.3.1 && chown -R builduser:builduser /build/ray-znEUyx" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/ray-znEUyx/ray-2.3.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1575287518" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/ray-znEUyx /tmp/ray-2.3.1-7mquubkkj bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20191202T160249Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.VY5vGmdQin as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.VY5vGmdQin Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20191202T160249Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20191202T160249Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (1176 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4507 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.29-3) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20191202T160249Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.VY5vGmdQin Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20191202T160249Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1114 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.VY5vGmdQin I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d ray=2.3.1-7 && mkdir -p /build/ray-znEUyx && dpkg-source --no-check -x /*.dsc /build/ray-znEUyx/ray-2.3.1 && chown -R builduser:builduser /build/ray-znEUyx"' exec /tmp/mmdebstrap.VY5vGmdQin Reading package lists... NOTICE: 'ray' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ray.git Please use: git clone https://salsa.debian.org/med-team/ray.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 665 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main ray 2.3.1-7 (dsc) [2113 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main ray 2.3.1-7 (tar) [450 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main ray 2.3.1-7 (diff) [213 kB] Fetched 665 kB in 1s (1128 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'ray_2.3.1-7.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting ray in /build/ray-znEUyx/ray-2.3.1 dpkg-source: info: unpacking ray_2.3.1.orig.tar.bz2 dpkg-source: info: unpacking ray_2.3.1-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying mips.patch dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying stable-link-order.patch dpkg-source: info: applying 2to3.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/ray-znEUyx/ray-2.3.1 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1575287518" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.VY5vGmdQin dpkg-buildpackage: info: source package ray dpkg-buildpackage: info: source version 2.3.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/ray-znEUyx/ray-2.3.1' dh_auto_clean -- CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security" HAVE_LIBZ=y HAVE_LIBBZ2=y make -j4 clean "CXXFLAGS=-g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security" HAVE_LIBZ=y HAVE_LIBBZ2=y make[2]: Entering directory '/build/ray-znEUyx/ray-2.3.1' make -w -j4 --jobserver-auth=3,4 -C RayPlatform clean make[3]: Entering directory '/build/ray-znEUyx/ray-2.3.1' make[3]: warning: -j4 forced in submake: resetting jobserver mode. echo CLEAN RayPlatform CLEAN RayPlatform rm -f libRayPlatform.a RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/MyAllocator.o RayPlatform/memory/RingAllocator.o RayPlatform/memory/allocator.o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DirtyBuffer.o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/Polytope.o RayPlatform/routing/Torus.o RayPlatform/communication/mpi_tags.o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/BufferedData.o RayPlatform/communication/Message.o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageRouter.o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/SwitchMan.o RayPlatform/core/ComputeCore.o RayPlatform/core/MiniRank.o RayPlatform/core/slave_modes.o RayPlatform/core/OperatingSystem.o RayPlatform/core/master_modes.o RayPlatform/core/statistics.o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/structures/StaticVector.o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Derivative.o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/ProcessStatus.o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/cryptography/crypto.o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/actors/Actor.o RayPlatform/actors/Playground.o RayPlatform/files/FileReader.o make[3]: Leaving directory '/build/ray-znEUyx/ray-2.3.1/RayPlatform' echo CLEAN Ray plugins CLEAN Ray plugins rm -f Ray PREFIX code/Amos/Amos.o code/CoverageGatherer/CoverageGatherer.o code/CoverageGatherer/CoverageDistribution.o code/EdgePurger/EdgePurger.o code/EdgePurger/EdgePurgerWorker.o code/Example/Example.o code/FusionData/FusionData.o code/FusionTaskCreator/FusionWorker.o code/FusionTaskCreator/FusionTaskCreator.o code/GeneOntology/KeyEncoder.o code/GeneOntology/GeneOntology.o code/GenomeNeighbourhood/GenomeNeighbourhood.o code/GenomeNeighbourhood/Neighbour.o code/GenomeNeighbourhood/NeighbourPair.o code/JoinerTaskCreator/JoinerWorker.o code/JoinerTaskCreator/JoinerTaskCreator.o code/KmerAcademyBuilder/KmerAcademyBuilder.o code/KmerAcademyBuilder/BloomFilter.o code/KmerAcademyBuilder/Kmer.o code/Library/LibraryPeakFinder.o code/Library/LibraryWorker.o code/Library/Library.o code/MachineHelper/MachineHelper.o code/MessageProcessor/MessageProcessor.o code/Mock/Parameters.o code/Mock/common_functions.o code/Mock/Mock.o code/NetworkTest/NetworkTest.o code/Partitioner/Partitioner.o code/PathEvaluator/PathEvaluator.o code/Scaffolder/Scaffolder.o code/Scaffolder/ScaffoldingLink.o code/Scaffolder/SummarizedLink.o code/Scaffolder/ScaffoldingAlgorithm.o code/Scaffolder/ScaffoldingVertex.o code/Scaffolder/ScaffoldingEdge.o code/Searcher/Searcher.o code/Searcher/SearchDirectory.o code/Searcher/ContigSearchEntry.o code/Searcher/ContigHit.o code/Searcher/ColorSet.o code/Searcher/VirtualKmerColor.o code/Searcher/QualityCaller.o code/Searcher/DistributionWriter.o code/Searcher/ColoredPeakFinder.o code/SeedExtender/SeedExtender.o code/SeedExtender/Direction.o code/SeedExtender/VertexMessenger.o code/SeedExtender/ReadFetcher.o code/SeedExtender/BubbleTool.o code/SeedExtender/Chooser.o code/SeedExtender/OpenAssemblerChooser.o code/SeedExtender/TipWatchdog.o code/SeedExtender/NovaEngine.o code/SeedExtender/ExtensionElement.o code/SeedExtender/DepthFirstSearchData.o code/SeedExtender/ExtensionData.o code/SeedingData/GraphPath.o code/SeedingData/SeedWorker.o code/SeedingData/SeedingData.o code/SeedingData/PathHandle.o code/SequencesIndexer/SequencesIndexer.o code/SequencesIndexer/IndexerWorker.o code/SequencesIndexer/PairedRead.o code/SequencesIndexer/ReadAnnotation.o code/SequencesLoader/SequencesLoader.o code/SequencesLoader/Read.o code/SequencesLoader/ArrayOfReads.o code/SequencesLoader/ColorSpaceDecoder.o code/SequencesLoader/ColorSpaceLoader.o code/SequencesLoader/FastaLoader.o code/SequencesLoader/FastaLoaderForReads.o code/SequencesLoader/FastqLoader.o code/SequencesLoader/ExportLoader.o code/SequencesLoader/LoaderInterface.o code/SequencesLoader/LoaderFactory.o code/SequencesLoader/SffLoader.o code/SequencesLoader/Loader.o code/SequencesLoader/BufferedReader.o code/SequencesLoader/ReadHandle.o code/SequencesLoader/BzReader.o code/SequencesLoader/FastqBz2Loader.o code/SequencesLoader/FastaBz2Loader.o code/SequencesLoader/FastqGzLoader.o code/SequencesLoader/FastaGzLoader.o code/SequencesLoader/SequenceFileDetector.o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o code/SpuriousSeedAnnihilator/AnnihilationWorker.o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o code/SpuriousSeedAnnihilator/AttributeFetcher.o code/SpuriousSeedAnnihilator/AnnotationFetcher.o code/SpuriousSeedAnnihilator/NanoMerger.o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o code/SpuriousSeedAnnihilator/GraphExplorer.o code/SpuriousSeedAnnihilator/GraphSearchResult.o code/SpuriousSeedAnnihilator/SeedGossipSolver.o code/SpuriousSeedAnnihilator/GossipAssetManager.o code/Surveyor/Mother.o code/Surveyor/StoreKeeper.o code/Surveyor/GenomeGraphReader.o code/Surveyor/CoalescenceManager.o code/Surveyor/ExperimentVertex.o code/Surveyor/MatrixOwner.o code/TaxonomyViewer/TaxonomyViewer.o code/TaxonomyViewer/GenomeToTaxonLoader.o code/TaxonomyViewer/TaxonomicTreeLoader.o code/TaxonomyViewer/TaxonNameLoader.o code/VerticesExtractor/VerticesExtractor.o code/VerticesExtractor/GridTable.o code/VerticesExtractor/GridTableIterator.o code/VerticesExtractor/Vertex.o code/application_core/Machine.o libRay.a libRayPlatform.a code/application_core/ray_main.o make[2]: Leaving directory '/build/ray-znEUyx/ray-2.3.1' rm -rf install-prefix rm -f README.Ray README.RayPlatform make[1]: Leaving directory '/build/ray-znEUyx/ray-2.3.1' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/ray-znEUyx/ray-2.3.1' dh_auto_build -- CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security" DEBLDFLAGS="-Wl,-z,relro -Wl,-z,now -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y make -j4 "INSTALL=install --strip-program=true" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security" "DEBLDFLAGS=-Wl,-z,relro -Wl,-z,now -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y make[2]: Entering directory '/build/ray-znEUyx/ray-2.3.1' echo " CXX code/application_core/ray_main.o" echo " CXX code/Amos/Amos.o" echo " CXX code/CoverageGatherer/CoverageGatherer.o" CXX code/application_core/ray_main.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/ray_main.cpp -o code/application_core/ray_main.o CXX code/Amos/Amos.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Amos/Amos.cpp -o code/Amos/Amos.o CXX code/CoverageGatherer/CoverageGatherer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageGatherer.cpp -o code/CoverageGatherer/CoverageGatherer.o echo " CXX code/CoverageGatherer/CoverageDistribution.o" CXX code/CoverageGatherer/CoverageDistribution.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageDistribution.cpp -o code/CoverageGatherer/CoverageDistribution.o echo " CXX code/EdgePurger/EdgePurger.o" CXX code/EdgePurger/EdgePurger.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurger.cpp -o code/EdgePurger/EdgePurger.o echo " CXX code/EdgePurger/EdgePurgerWorker.o" CXX code/EdgePurger/EdgePurgerWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurgerWorker.cpp -o code/EdgePurger/EdgePurgerWorker.o echo " CXX code/Example/Example.o" CXX code/Example/Example.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Example/Example.cpp -o code/Example/Example.o echo " CXX code/FusionData/FusionData.o" CXX code/FusionData/FusionData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionData/FusionData.cpp -o code/FusionData/FusionData.o echo " CXX code/FusionTaskCreator/FusionWorker.o" CXX code/FusionTaskCreator/FusionWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionWorker.cpp -o code/FusionTaskCreator/FusionWorker.o echo " CXX code/FusionTaskCreator/FusionTaskCreator.o" CXX code/FusionTaskCreator/FusionTaskCreator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionTaskCreator.cpp -o code/FusionTaskCreator/FusionTaskCreator.o echo " CXX code/GeneOntology/KeyEncoder.o" CXX code/GeneOntology/KeyEncoder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GeneOntology/KeyEncoder.cpp -o code/GeneOntology/KeyEncoder.o echo " CXX code/GeneOntology/GeneOntology.o" CXX code/GeneOntology/GeneOntology.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GeneOntology/GeneOntology.cpp -o code/GeneOntology/GeneOntology.o echo " CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o" CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/GenomeNeighbourhood.cpp -o code/GenomeNeighbourhood/GenomeNeighbourhood.o echo " CXX code/GenomeNeighbourhood/Neighbour.o" CXX code/GenomeNeighbourhood/Neighbour.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/Neighbour.cpp -o code/GenomeNeighbourhood/Neighbour.o echo " CXX code/GenomeNeighbourhood/NeighbourPair.o" CXX code/GenomeNeighbourhood/NeighbourPair.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/NeighbourPair.cpp -o code/GenomeNeighbourhood/NeighbourPair.o echo " CXX code/JoinerTaskCreator/JoinerWorker.o" CXX code/JoinerTaskCreator/JoinerWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerWorker.cpp -o code/JoinerTaskCreator/JoinerWorker.o echo " CXX code/JoinerTaskCreator/JoinerTaskCreator.o" CXX code/JoinerTaskCreator/JoinerTaskCreator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/JoinerTaskCreator/JoinerTaskCreator.cpp -o code/JoinerTaskCreator/JoinerTaskCreator.o echo " CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o" CXX code/KmerAcademyBuilder/KmerAcademyBuilder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/KmerAcademyBuilder.cpp -o code/KmerAcademyBuilder/KmerAcademyBuilder.o echo " CXX code/KmerAcademyBuilder/BloomFilter.o" CXX code/KmerAcademyBuilder/BloomFilter.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/BloomFilter.cpp -o code/KmerAcademyBuilder/BloomFilter.o echo " CXX code/KmerAcademyBuilder/Kmer.o" CXX code/KmerAcademyBuilder/Kmer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/KmerAcademyBuilder/Kmer.cpp -o code/KmerAcademyBuilder/Kmer.o echo " CXX code/Library/LibraryPeakFinder.o" CXX code/Library/LibraryPeakFinder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryPeakFinder.cpp -o code/Library/LibraryPeakFinder.o echo " CXX code/Library/LibraryWorker.o" CXX code/Library/LibraryWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/LibraryWorker.cpp -o code/Library/LibraryWorker.o echo " CXX code/Library/Library.o" CXX code/Library/Library.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Library/Library.cpp -o code/Library/Library.o echo " CXX code/MachineHelper/MachineHelper.o" CXX code/MachineHelper/MachineHelper.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MachineHelper/MachineHelper.cpp -o code/MachineHelper/MachineHelper.o echo " CXX code/MessageProcessor/MessageProcessor.o" CXX code/MessageProcessor/MessageProcessor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/MessageProcessor/MessageProcessor.cpp -o code/MessageProcessor/MessageProcessor.o echo " CXX code/Mock/Parameters.o" CXX code/Mock/Parameters.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Parameters.cpp -o code/Mock/Parameters.o echo " CXX code/Mock/common_functions.o" CXX code/Mock/common_functions.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/common_functions.cpp -o code/Mock/common_functions.o echo " CXX code/Mock/Mock.o" CXX code/Mock/Mock.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Mock/Mock.cpp -o code/Mock/Mock.o echo " CXX code/NetworkTest/NetworkTest.o" CXX code/NetworkTest/NetworkTest.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/NetworkTest/NetworkTest.cpp -o code/NetworkTest/NetworkTest.o echo " CXX code/Partitioner/Partitioner.o" CXX code/Partitioner/Partitioner.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Partitioner/Partitioner.cpp -o code/Partitioner/Partitioner.o echo " CXX code/PathEvaluator/PathEvaluator.o" CXX code/PathEvaluator/PathEvaluator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/PathEvaluator/PathEvaluator.cpp -o code/PathEvaluator/PathEvaluator.o echo " CXX code/Scaffolder/Scaffolder.o" CXX code/Scaffolder/Scaffolder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/Scaffolder.cpp -o code/Scaffolder/Scaffolder.o echo " CXX code/Scaffolder/ScaffoldingLink.o" CXX code/Scaffolder/ScaffoldingLink.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingLink.cpp -o code/Scaffolder/ScaffoldingLink.o echo " CXX code/Scaffolder/SummarizedLink.o" CXX code/Scaffolder/SummarizedLink.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/SummarizedLink.cpp -o code/Scaffolder/SummarizedLink.o echo " CXX code/Scaffolder/ScaffoldingAlgorithm.o" CXX code/Scaffolder/ScaffoldingAlgorithm.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingAlgorithm.cpp -o code/Scaffolder/ScaffoldingAlgorithm.o echo " CXX code/Scaffolder/ScaffoldingVertex.o" CXX code/Scaffolder/ScaffoldingVertex.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingVertex.cpp -o code/Scaffolder/ScaffoldingVertex.o echo " CXX code/Scaffolder/ScaffoldingEdge.o" CXX code/Scaffolder/ScaffoldingEdge.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Scaffolder/ScaffoldingEdge.cpp -o code/Scaffolder/ScaffoldingEdge.o echo " CXX code/Searcher/Searcher.o" CXX code/Searcher/Searcher.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/Searcher.cpp -o code/Searcher/Searcher.o echo " CXX code/Searcher/SearchDirectory.o" CXX code/Searcher/SearchDirectory.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/SearchDirectory.cpp -o code/Searcher/SearchDirectory.o echo " CXX code/Searcher/ContigSearchEntry.o" CXX code/Searcher/ContigSearchEntry.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigSearchEntry.cpp -o code/Searcher/ContigSearchEntry.o echo " CXX code/Searcher/ContigHit.o" CXX code/Searcher/ContigHit.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigHit.cpp -o code/Searcher/ContigHit.o code/Searcher/SearchDirectory.cpp: In member function ‘void SearchDirectory::readLineFromFile(char*, int)’: code/Searcher/SearchDirectory.cpp:320:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 320 | fgets(line,length,m_currentFileStream); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ echo " CXX code/Searcher/ColorSet.o" CXX code/Searcher/ColorSet.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColorSet.cpp -o code/Searcher/ColorSet.o echo " CXX code/Searcher/VirtualKmerColor.o" CXX code/Searcher/VirtualKmerColor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/VirtualKmerColor.cpp -o code/Searcher/VirtualKmerColor.o echo " CXX code/Searcher/QualityCaller.o" CXX code/Searcher/QualityCaller.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/QualityCaller.cpp -o code/Searcher/QualityCaller.o echo " CXX code/Searcher/DistributionWriter.o" CXX code/Searcher/DistributionWriter.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/DistributionWriter.cpp -o code/Searcher/DistributionWriter.o echo " CXX code/Searcher/ColoredPeakFinder.o" CXX code/Searcher/ColoredPeakFinder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColoredPeakFinder.cpp -o code/Searcher/ColoredPeakFinder.o echo " CXX code/SeedExtender/SeedExtender.o" CXX code/SeedExtender/SeedExtender.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/SeedExtender.cpp -o code/SeedExtender/SeedExtender.o echo " CXX code/SeedExtender/Direction.o" CXX code/SeedExtender/Direction.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Direction.cpp -o code/SeedExtender/Direction.o echo " CXX code/SeedExtender/VertexMessenger.o" CXX code/SeedExtender/VertexMessenger.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/VertexMessenger.cpp -o code/SeedExtender/VertexMessenger.o echo " CXX code/SeedExtender/ReadFetcher.o" CXX code/SeedExtender/ReadFetcher.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ReadFetcher.cpp -o code/SeedExtender/ReadFetcher.o echo " CXX code/SeedExtender/BubbleTool.o" CXX code/SeedExtender/BubbleTool.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/BubbleTool.cpp -o code/SeedExtender/BubbleTool.o echo " CXX code/SeedExtender/Chooser.o" CXX code/SeedExtender/Chooser.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/Chooser.cpp -o code/SeedExtender/Chooser.o echo " CXX code/SeedExtender/OpenAssemblerChooser.o" CXX code/SeedExtender/OpenAssemblerChooser.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/OpenAssemblerChooser.cpp -o code/SeedExtender/OpenAssemblerChooser.o echo " CXX code/SeedExtender/TipWatchdog.o" CXX code/SeedExtender/TipWatchdog.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/TipWatchdog.cpp -o code/SeedExtender/TipWatchdog.o echo " CXX code/SeedExtender/NovaEngine.o" CXX code/SeedExtender/NovaEngine.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/NovaEngine.cpp -o code/SeedExtender/NovaEngine.o echo " CXX code/SeedExtender/ExtensionElement.o" CXX code/SeedExtender/ExtensionElement.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionElement.cpp -o code/SeedExtender/ExtensionElement.o echo " CXX code/SeedExtender/DepthFirstSearchData.o" CXX code/SeedExtender/DepthFirstSearchData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/DepthFirstSearchData.cpp -o code/SeedExtender/DepthFirstSearchData.o echo " CXX code/SeedExtender/ExtensionData.o" CXX code/SeedExtender/ExtensionData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedExtender/ExtensionData.cpp -o code/SeedExtender/ExtensionData.o echo " CXX code/SeedingData/GraphPath.o" CXX code/SeedingData/GraphPath.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/GraphPath.cpp -o code/SeedingData/GraphPath.o echo " CXX code/SeedingData/SeedWorker.o" CXX code/SeedingData/SeedWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedWorker.cpp -o code/SeedingData/SeedWorker.o echo " CXX code/SeedingData/SeedingData.o" CXX code/SeedingData/SeedingData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/SeedingData.cpp -o code/SeedingData/SeedingData.o echo " CXX code/SeedingData/PathHandle.o" CXX code/SeedingData/PathHandle.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SeedingData/PathHandle.cpp -o code/SeedingData/PathHandle.o echo " CXX code/SequencesIndexer/SequencesIndexer.o" CXX code/SequencesIndexer/SequencesIndexer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/SequencesIndexer.cpp -o code/SequencesIndexer/SequencesIndexer.o echo " CXX code/SequencesIndexer/IndexerWorker.o" CXX code/SequencesIndexer/IndexerWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/IndexerWorker.cpp -o code/SequencesIndexer/IndexerWorker.o echo " CXX code/SequencesIndexer/PairedRead.o" CXX code/SequencesIndexer/PairedRead.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/PairedRead.cpp -o code/SequencesIndexer/PairedRead.o echo " CXX code/SequencesIndexer/ReadAnnotation.o" CXX code/SequencesIndexer/ReadAnnotation.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesIndexer/ReadAnnotation.cpp -o code/SequencesIndexer/ReadAnnotation.o echo " CXX code/SequencesLoader/SequencesLoader.o" CXX code/SequencesLoader/SequencesLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SequencesLoader.cpp -o code/SequencesLoader/SequencesLoader.o echo " CXX code/SequencesLoader/Read.o" CXX code/SequencesLoader/Read.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/Read.cpp -o code/SequencesLoader/Read.o echo " CXX code/SequencesLoader/ArrayOfReads.o" CXX code/SequencesLoader/ArrayOfReads.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ArrayOfReads.cpp -o code/SequencesLoader/ArrayOfReads.o echo " CXX code/SequencesLoader/ColorSpaceDecoder.o" CXX code/SequencesLoader/ColorSpaceDecoder.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ColorSpaceDecoder.cpp -o code/SequencesLoader/ColorSpaceDecoder.o echo " CXX code/SequencesLoader/ColorSpaceLoader.o" CXX code/SequencesLoader/ColorSpaceLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ColorSpaceLoader.cpp -o code/SequencesLoader/ColorSpaceLoader.o echo " CXX code/SequencesLoader/FastaLoader.o" CXX code/SequencesLoader/FastaLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaLoader.cpp -o code/SequencesLoader/FastaLoader.o echo " CXX code/SequencesLoader/FastaLoaderForReads.o" CXX code/SequencesLoader/FastaLoaderForReads.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaLoaderForReads.cpp -o code/SequencesLoader/FastaLoaderForReads.o echo " CXX code/SequencesLoader/FastqLoader.o" CXX code/SequencesLoader/FastqLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqLoader.cpp -o code/SequencesLoader/FastqLoader.o echo " CXX code/SequencesLoader/ExportLoader.o" CXX code/SequencesLoader/ExportLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ExportLoader.cpp -o code/SequencesLoader/ExportLoader.o echo " CXX code/SequencesLoader/LoaderInterface.o" CXX code/SequencesLoader/LoaderInterface.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderInterface.cpp -o code/SequencesLoader/LoaderInterface.o echo " CXX code/SequencesLoader/LoaderFactory.o" CXX code/SequencesLoader/LoaderFactory.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/LoaderFactory.cpp -o code/SequencesLoader/LoaderFactory.o echo " CXX code/SequencesLoader/SffLoader.o" CXX code/SequencesLoader/SffLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SffLoader.cpp -o code/SequencesLoader/SffLoader.o echo " CXX code/SequencesLoader/Loader.o" CXX code/SequencesLoader/Loader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/Loader.cpp -o code/SequencesLoader/Loader.o echo " CXX code/SequencesLoader/BufferedReader.o" CXX code/SequencesLoader/BufferedReader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/BufferedReader.cpp -o code/SequencesLoader/BufferedReader.o echo " CXX code/SequencesLoader/ReadHandle.o" CXX code/SequencesLoader/ReadHandle.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ReadHandle.cpp -o code/SequencesLoader/ReadHandle.o echo " CXX code/SequencesLoader/BzReader.o" CXX code/SequencesLoader/BzReader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/BzReader.cpp -o code/SequencesLoader/BzReader.o echo " CXX code/SequencesLoader/FastqBz2Loader.o" CXX code/SequencesLoader/FastqBz2Loader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqBz2Loader.cpp -o code/SequencesLoader/FastqBz2Loader.o echo " CXX code/SequencesLoader/FastaBz2Loader.o" CXX code/SequencesLoader/FastaBz2Loader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaBz2Loader.cpp -o code/SequencesLoader/FastaBz2Loader.o echo " CXX code/SequencesLoader/FastqGzLoader.o" CXX code/SequencesLoader/FastqGzLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqGzLoader.cpp -o code/SequencesLoader/FastqGzLoader.o echo " CXX code/SequencesLoader/FastaGzLoader.o" CXX code/SequencesLoader/FastaGzLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaGzLoader.cpp -o code/SequencesLoader/FastaGzLoader.o echo " CXX code/SequencesLoader/SequenceFileDetector.o" CXX code/SequencesLoader/SequenceFileDetector.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/SequenceFileDetector.cpp -o code/SequencesLoader/SequenceFileDetector.o echo " CXX code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o" CXX code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.cpp -o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o echo " CXX code/SpuriousSeedAnnihilator/AnnihilationWorker.o" CXX code/SpuriousSeedAnnihilator/AnnihilationWorker.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AnnihilationWorker.cpp -o code/SpuriousSeedAnnihilator/AnnihilationWorker.o echo " CXX code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o" CXX code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.cpp -o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o echo " CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o" CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AttributeFetcher.cpp -o code/SpuriousSeedAnnihilator/AttributeFetcher.o echo " CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o" CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AnnotationFetcher.cpp -o code/SpuriousSeedAnnihilator/AnnotationFetcher.o echo " CXX code/SpuriousSeedAnnihilator/NanoMerger.o" CXX code/SpuriousSeedAnnihilator/NanoMerger.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/NanoMerger.cpp -o code/SpuriousSeedAnnihilator/NanoMerger.o echo " CXX code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o" CXX code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedMergingWorkflow.cpp -o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o echo " CXX code/SpuriousSeedAnnihilator/GraphExplorer.o" CXX code/SpuriousSeedAnnihilator/GraphExplorer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GraphExplorer.cpp -o code/SpuriousSeedAnnihilator/GraphExplorer.o echo " CXX code/SpuriousSeedAnnihilator/GraphSearchResult.o" CXX code/SpuriousSeedAnnihilator/GraphSearchResult.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GraphSearchResult.cpp -o code/SpuriousSeedAnnihilator/GraphSearchResult.o echo " CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o" CXX code/SpuriousSeedAnnihilator/SeedGossipSolver.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedGossipSolver.cpp -o code/SpuriousSeedAnnihilator/SeedGossipSolver.o echo " CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o" CXX code/SpuriousSeedAnnihilator/GossipAssetManager.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/GossipAssetManager.cpp -o code/SpuriousSeedAnnihilator/GossipAssetManager.o echo " CXX code/Surveyor/Mother.o" CXX code/Surveyor/Mother.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/Mother.cpp -o code/Surveyor/Mother.o echo " CXX code/Surveyor/StoreKeeper.o" CXX code/Surveyor/StoreKeeper.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/StoreKeeper.cpp -o code/Surveyor/StoreKeeper.o echo " CXX code/Surveyor/GenomeGraphReader.o" CXX code/Surveyor/GenomeGraphReader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/GenomeGraphReader.cpp -o code/Surveyor/GenomeGraphReader.o echo " CXX code/Surveyor/CoalescenceManager.o" CXX code/Surveyor/CoalescenceManager.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/CoalescenceManager.cpp -o code/Surveyor/CoalescenceManager.o echo " CXX code/Surveyor/ExperimentVertex.o" CXX code/Surveyor/ExperimentVertex.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/ExperimentVertex.cpp -o code/Surveyor/ExperimentVertex.o echo " CXX code/Surveyor/MatrixOwner.o" CXX code/Surveyor/MatrixOwner.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/MatrixOwner.cpp -o code/Surveyor/MatrixOwner.o echo " CXX code/TaxonomyViewer/TaxonomyViewer.o" CXX code/TaxonomyViewer/TaxonomyViewer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonomyViewer.cpp -o code/TaxonomyViewer/TaxonomyViewer.o echo " CXX code/TaxonomyViewer/GenomeToTaxonLoader.o" CXX code/TaxonomyViewer/GenomeToTaxonLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/GenomeToTaxonLoader.cpp -o code/TaxonomyViewer/GenomeToTaxonLoader.o echo " CXX code/TaxonomyViewer/TaxonomicTreeLoader.o" CXX code/TaxonomyViewer/TaxonomicTreeLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonomicTreeLoader.cpp -o code/TaxonomyViewer/TaxonomicTreeLoader.o echo " CXX code/TaxonomyViewer/TaxonNameLoader.o" CXX code/TaxonomyViewer/TaxonNameLoader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonNameLoader.cpp -o code/TaxonomyViewer/TaxonNameLoader.o echo " CXX code/VerticesExtractor/VerticesExtractor.o" CXX code/VerticesExtractor/VerticesExtractor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/VerticesExtractor.cpp -o code/VerticesExtractor/VerticesExtractor.o echo " CXX code/VerticesExtractor/GridTable.o" CXX code/VerticesExtractor/GridTable.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTable.cpp -o code/VerticesExtractor/GridTable.o echo " CXX code/VerticesExtractor/GridTableIterator.o" CXX code/VerticesExtractor/GridTableIterator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/GridTableIterator.cpp -o code/VerticesExtractor/GridTableIterator.o echo " CXX code/VerticesExtractor/Vertex.o" CXX code/VerticesExtractor/Vertex.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/VerticesExtractor/Vertex.cpp -o code/VerticesExtractor/Vertex.o echo " CXX code/application_core/Machine.o" CXX code/application_core/Machine.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/Machine.cpp -o code/application_core/Machine.o make -w -j4 --jobserver-auth=3,4 -C RayPlatform make[3]: Entering directory '/build/ray-znEUyx/ray-2.3.1' make[3]: warning: -j4 forced in submake: resetting jobserver mode. echo " CXX RayPlatform/memory/ReusableMemoryStore.o" echo " CXX RayPlatform/memory/MyAllocator.o" echo " CXX RayPlatform/memory/RingAllocator.o" CXX RayPlatform/memory/ReusableMemoryStore.o CXX RayPlatform/memory/MyAllocator.o CXX RayPlatform/memory/RingAllocator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/ReusableMemoryStore.cpp mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/RingAllocator.o RayPlatform/memory/RingAllocator.cpp mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/MyAllocator.o RayPlatform/memory/MyAllocator.cpp echo " CXX RayPlatform/memory/allocator.o" CXX RayPlatform/memory/allocator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/allocator.o RayPlatform/memory/allocator.cpp echo " CXX RayPlatform/memory/DefragmentationGroup.o" CXX RayPlatform/memory/DefragmentationGroup.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/DefragmentationGroup.cpp echo " CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o" CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.cpp echo " CXX RayPlatform/memory/DefragmentationLane.o" CXX RayPlatform/memory/DefragmentationLane.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DefragmentationLane.cpp echo " CXX RayPlatform/memory/DirtyBuffer.o" CXX RayPlatform/memory/DirtyBuffer.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DirtyBuffer.o RayPlatform/memory/DirtyBuffer.cpp echo " CXX RayPlatform/routing/ConnectionGraph.o" CXX RayPlatform/routing/ConnectionGraph.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/ConnectionGraph.cpp echo " CXX RayPlatform/routing/GraphImplementation.o" CXX RayPlatform/routing/GraphImplementation.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementation.cpp echo " CXX RayPlatform/routing/GraphImplementationRandom.o" CXX RayPlatform/routing/GraphImplementationRandom.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationRandom.cpp echo " CXX RayPlatform/routing/GraphImplementationComplete.o" CXX RayPlatform/routing/GraphImplementationComplete.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationComplete.cpp echo " CXX RayPlatform/routing/GraphImplementationDeBruijn.o" CXX RayPlatform/routing/GraphImplementationDeBruijn.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationDeBruijn.cpp echo " CXX RayPlatform/routing/GraphImplementationKautz.o" CXX RayPlatform/routing/GraphImplementationKautz.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationKautz.cpp echo " CXX RayPlatform/routing/GraphImplementationExperimental.o" CXX RayPlatform/routing/GraphImplementationExperimental.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationExperimental.cpp echo " CXX RayPlatform/routing/GraphImplementationGroup.o" CXX RayPlatform/routing/GraphImplementationGroup.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/GraphImplementationGroup.cpp echo " CXX RayPlatform/routing/Polytope.o" CXX RayPlatform/routing/Polytope.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Polytope.o RayPlatform/routing/Polytope.cpp echo " CXX RayPlatform/routing/Torus.o" CXX RayPlatform/routing/Torus.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Torus.o RayPlatform/routing/Torus.cpp echo " CXX RayPlatform/communication/mpi_tags.o" CXX RayPlatform/communication/mpi_tags.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/mpi_tags.o RayPlatform/communication/mpi_tags.cpp echo " CXX RayPlatform/communication/VirtualCommunicator.o" CXX RayPlatform/communication/VirtualCommunicator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/VirtualCommunicator.cpp echo " CXX RayPlatform/communication/BufferedData.o" CXX RayPlatform/communication/BufferedData.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/BufferedData.o RayPlatform/communication/BufferedData.cpp echo " CXX RayPlatform/communication/Message.o" CXX RayPlatform/communication/Message.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/Message.o RayPlatform/communication/Message.cpp echo " CXX RayPlatform/communication/MessagesHandler.o" CXX RayPlatform/communication/MessagesHandler.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessagesHandler.cpp echo " CXX RayPlatform/communication/MessageQueue.o" CXX RayPlatform/communication/MessageQueue.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageQueue.cpp echo " CXX RayPlatform/communication/MessageRouter.o" CXX RayPlatform/communication/MessageRouter.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/communication/MessageRouter.o RayPlatform/communication/MessageRouter.cpp echo " CXX RayPlatform/scheduling/VirtualProcessor.o" CXX RayPlatform/scheduling/VirtualProcessor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/VirtualProcessor.cpp echo " CXX RayPlatform/scheduling/TaskCreator.o" CXX RayPlatform/scheduling/TaskCreator.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/TaskCreator.cpp echo " CXX RayPlatform/scheduling/SwitchMan.o" CXX RayPlatform/scheduling/SwitchMan.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/scheduling/SwitchMan.o RayPlatform/scheduling/SwitchMan.cpp echo " CXX RayPlatform/core/ComputeCore.o" CXX RayPlatform/core/ComputeCore.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/ComputeCore.o RayPlatform/core/ComputeCore.cpp echo " AR libRay.a" AR libRay.a ar rcs libRay.a code/Amos/Amos.o code/CoverageGatherer/CoverageGatherer.o code/CoverageGatherer/CoverageDistribution.o code/EdgePurger/EdgePurger.o code/EdgePurger/EdgePurgerWorker.o code/Example/Example.o code/FusionData/FusionData.o code/FusionTaskCreator/FusionWorker.o code/FusionTaskCreator/FusionTaskCreator.o code/GeneOntology/KeyEncoder.o code/GeneOntology/GeneOntology.o code/GenomeNeighbourhood/GenomeNeighbourhood.o code/GenomeNeighbourhood/Neighbour.o code/GenomeNeighbourhood/NeighbourPair.o code/JoinerTaskCreator/JoinerWorker.o code/JoinerTaskCreator/JoinerTaskCreator.o code/KmerAcademyBuilder/KmerAcademyBuilder.o code/KmerAcademyBuilder/BloomFilter.o code/KmerAcademyBuilder/Kmer.o code/Library/LibraryPeakFinder.o code/Library/LibraryWorker.o code/Library/Library.o code/MachineHelper/MachineHelper.o code/MessageProcessor/MessageProcessor.o code/Mock/Parameters.o code/Mock/common_functions.o code/Mock/Mock.o code/NetworkTest/NetworkTest.o code/Partitioner/Partitioner.o code/PathEvaluator/PathEvaluator.o code/Scaffolder/Scaffolder.o code/Scaffolder/ScaffoldingLink.o code/Scaffolder/SummarizedLink.o code/Scaffolder/ScaffoldingAlgorithm.o code/Scaffolder/ScaffoldingVertex.o code/Scaffolder/ScaffoldingEdge.o code/Searcher/Searcher.o code/Searcher/SearchDirectory.o code/Searcher/ContigSearchEntry.o code/Searcher/ContigHit.o code/Searcher/ColorSet.o code/Searcher/VirtualKmerColor.o code/Searcher/QualityCaller.o code/Searcher/DistributionWriter.o code/Searcher/ColoredPeakFinder.o code/SeedExtender/SeedExtender.o code/SeedExtender/Direction.o code/SeedExtender/VertexMessenger.o code/SeedExtender/ReadFetcher.o code/SeedExtender/BubbleTool.o code/SeedExtender/Chooser.o code/SeedExtender/OpenAssemblerChooser.o code/SeedExtender/TipWatchdog.o code/SeedExtender/NovaEngine.o code/SeedExtender/ExtensionElement.o code/SeedExtender/DepthFirstSearchData.o code/SeedExtender/ExtensionData.o code/SeedingData/GraphPath.o code/SeedingData/SeedWorker.o code/SeedingData/SeedingData.o code/SeedingData/PathHandle.o code/SequencesIndexer/SequencesIndexer.o code/SequencesIndexer/IndexerWorker.o code/SequencesIndexer/PairedRead.o code/SequencesIndexer/ReadAnnotation.o code/SequencesLoader/SequencesLoader.o code/SequencesLoader/Read.o code/SequencesLoader/ArrayOfReads.o code/SequencesLoader/ColorSpaceDecoder.o code/SequencesLoader/ColorSpaceLoader.o code/SequencesLoader/FastaLoader.o code/SequencesLoader/FastaLoaderForReads.o code/SequencesLoader/FastqLoader.o code/SequencesLoader/ExportLoader.o code/SequencesLoader/LoaderInterface.o code/SequencesLoader/LoaderFactory.o code/SequencesLoader/SffLoader.o code/SequencesLoader/Loader.o code/SequencesLoader/BufferedReader.o code/SequencesLoader/ReadHandle.o code/SequencesLoader/BzReader.o code/SequencesLoader/FastqBz2Loader.o code/SequencesLoader/FastaBz2Loader.o code/SequencesLoader/FastqGzLoader.o code/SequencesLoader/FastaGzLoader.o code/SequencesLoader/SequenceFileDetector.o code/SpuriousSeedAnnihilator/SpuriousSeedAnnihilator.o code/SpuriousSeedAnnihilator/AnnihilationWorker.o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o code/SpuriousSeedAnnihilator/AttributeFetcher.o code/SpuriousSeedAnnihilator/AnnotationFetcher.o code/SpuriousSeedAnnihilator/NanoMerger.o code/SpuriousSeedAnnihilator/SeedMergingWorkflow.o code/SpuriousSeedAnnihilator/GraphExplorer.o code/SpuriousSeedAnnihilator/GraphSearchResult.o code/SpuriousSeedAnnihilator/SeedGossipSolver.o code/SpuriousSeedAnnihilator/GossipAssetManager.o code/Surveyor/Mother.o code/Surveyor/StoreKeeper.o code/Surveyor/GenomeGraphReader.o code/Surveyor/CoalescenceManager.o code/Surveyor/ExperimentVertex.o code/Surveyor/MatrixOwner.o code/TaxonomyViewer/TaxonomyViewer.o code/TaxonomyViewer/GenomeToTaxonLoader.o code/TaxonomyViewer/TaxonomicTreeLoader.o code/TaxonomyViewer/TaxonNameLoader.o code/VerticesExtractor/VerticesExtractor.o code/VerticesExtractor/GridTable.o code/VerticesExtractor/GridTableIterator.o code/VerticesExtractor/Vertex.o code/application_core/Machine.o echo " CXX RayPlatform/core/MiniRank.o" CXX RayPlatform/core/MiniRank.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/MiniRank.o RayPlatform/core/MiniRank.cpp echo " CXX RayPlatform/core/slave_modes.o" CXX RayPlatform/core/slave_modes.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/slave_modes.o RayPlatform/core/slave_modes.cpp echo " CXX RayPlatform/core/OperatingSystem.o" CXX RayPlatform/core/OperatingSystem.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/OperatingSystem.o RayPlatform/core/OperatingSystem.cpp echo " CXX RayPlatform/core/master_modes.o" CXX RayPlatform/core/master_modes.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/master_modes.o RayPlatform/core/master_modes.cpp echo " CXX RayPlatform/core/statistics.o" CXX RayPlatform/core/statistics.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/core/statistics.o RayPlatform/core/statistics.cpp echo " CXX RayPlatform/plugins/CorePlugin.o" CXX RayPlatform/plugins/CorePlugin.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/CorePlugin.cpp echo " CXX RayPlatform/plugins/RegisteredPlugin.o" CXX RayPlatform/plugins/RegisteredPlugin.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/plugins/RegisteredPlugin.cpp echo " CXX RayPlatform/structures/StaticVector.o" CXX RayPlatform/structures/StaticVector.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/structures/StaticVector.o RayPlatform/structures/StaticVector.cpp echo " CXX RayPlatform/profiling/Profiler.o" CXX RayPlatform/profiling/Profiler.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Profiler.cpp echo " CXX RayPlatform/profiling/Derivative.o" CXX RayPlatform/profiling/Derivative.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/Derivative.o RayPlatform/profiling/Derivative.cpp echo " CXX RayPlatform/profiling/TickLogger.o" CXX RayPlatform/profiling/TickLogger.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TickLogger.cpp echo " CXX RayPlatform/profiling/TimePrinter.o" CXX RayPlatform/profiling/TimePrinter.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/TimePrinter.cpp echo " CXX RayPlatform/profiling/ProcessStatus.o" CXX RayPlatform/profiling/ProcessStatus.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/profiling/ProcessStatus.o RayPlatform/profiling/ProcessStatus.cpp echo " CXX RayPlatform/handlers/MasterModeExecutor.o" CXX RayPlatform/handlers/MasterModeExecutor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/MasterModeExecutor.cpp echo " CXX RayPlatform/handlers/SlaveModeExecutor.o" CXX RayPlatform/handlers/SlaveModeExecutor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.cpp echo " CXX RayPlatform/handlers/MessageTagExecutor.o" CXX RayPlatform/handlers/MessageTagExecutor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/handlers/MessageTagExecutor.cpp echo " CXX RayPlatform/cryptography/crypto.o" CXX RayPlatform/cryptography/crypto.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/cryptography/crypto.o RayPlatform/cryptography/crypto.cpp echo " CXX RayPlatform/store/KeyValueStore.o" CXX RayPlatform/store/KeyValueStore.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStore.cpp echo " CXX RayPlatform/store/KeyValueStoreItem.o" CXX RayPlatform/store/KeyValueStoreItem.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreItem.cpp echo " CXX RayPlatform/store/KeyValueStoreRequest.o" CXX RayPlatform/store/KeyValueStoreRequest.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/store/KeyValueStoreRequest.cpp echo " CXX RayPlatform/actors/Actor.o" CXX RayPlatform/actors/Actor.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Actor.o RayPlatform/actors/Actor.cpp echo " CXX RayPlatform/actors/Playground.o" CXX RayPlatform/actors/Playground.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/actors/Playground.o RayPlatform/actors/Playground.cpp echo " CXX RayPlatform/files/FileReader.o" CXX RayPlatform/files/FileReader.o mpicxx -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/ray-znEUyx/ray-2.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/files/FileReader.o RayPlatform/files/FileReader.cpp echo " AR libRayPlatform.a" AR libRayPlatform.a ar rcs libRayPlatform.a RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/MyAllocator.o RayPlatform/memory/RingAllocator.o RayPlatform/memory/allocator.o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DirtyBuffer.o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationComplete.o RayPlatform/routing/GraphImplementationDeBruijn.o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/Polytope.o RayPlatform/routing/Torus.o RayPlatform/communication/mpi_tags.o RayPlatform/communication/VirtualCommunicator.o RayPlatform/communication/BufferedData.o RayPlatform/communication/Message.o RayPlatform/communication/MessagesHandler.o RayPlatform/communication/MessageQueue.o RayPlatform/communication/MessageRouter.o RayPlatform/scheduling/VirtualProcessor.o RayPlatform/scheduling/TaskCreator.o RayPlatform/scheduling/SwitchMan.o RayPlatform/core/ComputeCore.o RayPlatform/core/MiniRank.o RayPlatform/core/slave_modes.o RayPlatform/core/OperatingSystem.o RayPlatform/core/master_modes.o RayPlatform/core/statistics.o RayPlatform/plugins/CorePlugin.o RayPlatform/plugins/RegisteredPlugin.o RayPlatform/structures/StaticVector.o RayPlatform/profiling/Profiler.o RayPlatform/profiling/Derivative.o RayPlatform/profiling/TickLogger.o RayPlatform/profiling/TimePrinter.o RayPlatform/profiling/ProcessStatus.o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/cryptography/crypto.o RayPlatform/store/KeyValueStore.o RayPlatform/store/KeyValueStoreItem.o RayPlatform/store/KeyValueStoreRequest.o RayPlatform/actors/Actor.o RayPlatform/actors/Playground.o RayPlatform/files/FileReader.o make[3]: Leaving directory '/build/ray-znEUyx/ray-2.3.1/RayPlatform' cp RayPlatform/libRayPlatform.a libRayPlatform.a echo " LD Ray" LD Ray mpicxx code/application_core/ray_main.o libRay.a libRayPlatform.a -oRay -lz -lbz2 -Wl,-z,relro -Wl,-z,now -lpthread echo install-prefix > PREFIX make[2]: Leaving directory '/build/ray-znEUyx/ray-2.3.1' #Rename 2 docs to make more sence in package context cp README.md README.Ray cp RayPlatform/README.md README.RayPlatform cp RayPlatform/README.md RayPlatform/README make[1]: Leaving directory '/build/ray-znEUyx/ray-2.3.1' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/build/ray-znEUyx/ray-2.3.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ray-znEUyx/ray-2.3.1' mkdir -p install-prefix echo "" echo "Installing Ray to install-prefix" Installing Ray to install-prefix echo "" cp LICENSE.txt install-prefix cp gpl-3.0.txt install-prefix cp RayPlatform/lgpl-3.0.txt install-prefix cp Ray install-prefix cp -r Documentation install-prefix cp README.md install-prefix cp MANUAL_PAGE.txt install-prefix cp AUTHORS install-prefix cp -r scripts REFIX mkdir install-prefix/RayPlatform cp RayPlatform/AUTHORS install-prefix/RayPlatform cp RayPlatform/README.md install-prefix/RayPlatform cp -r RayPlatform/Documentation install-prefix/RayPlatform make[1]: Leaving directory '/build/ray-znEUyx/ray-2.3.1' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'ray' in '../ray_2.3.1-7_amd64.deb'. dpkg-deb: building package 'ray-dbgsym' in '../ray-dbgsym_2.3.1-7_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../ray_2.3.1-7_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/ray-znEUyx /tmp/ray-2.3.1-7mquubkkj I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.VY5vGmdQin... I: success in 1007.3606 seconds md5: ray-dbgsym_2.3.1-7_amd64.deb: OK md5: ray_2.3.1-7_amd64.deb: OK sha1: ray-dbgsym_2.3.1-7_amd64.deb: OK sha1: ray_2.3.1-7_amd64.deb: OK sha256: ray-dbgsym_2.3.1-7_amd64.deb: OK sha256: ray_2.3.1-7_amd64.deb: OK Checksums: OK