Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/r/raxml/raxml_8.2.12+dfsg-6+b4_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/raxml-8.2.12+dfsg-6+b43sb6grx4/raxml_8.2.12+dfsg-6+b4_amd64.buildinfo Get source package info: raxml=8.2.12+dfsg-6 Source URL: http://snapshot.notset.fr/mr/package/raxml/8.2.12+dfsg-6/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11 base-passwd=3.5.49 bash=5.1-2+b1 binutils=2.35.2-2 binutils-common=2.35.2-2 binutils-x86-64-linux-gnu=2.35.2-2 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.75 debhelper=13.3.4 debianutils=4.11.2 dh-autoreconf=20 dh-strip-nondeterminism=1.11.0-1 diffutils=1:3.7-5 dpkg=1.20.7.1 dpkg-dev=1.20.7.1 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libbinutils=2.35.2-2 libblkid1=2.36.1-7 libbz2-1.0=1.0.8-4 libc-bin=2.31-9 libc-dev-bin=2.31-9 libc6=2.31-9 libc6-dev=2.31-9 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libcom-err2=1.46.2-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.2-2 libctf0=2.35.2-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.256 libdebhelper-perl=13.3.4 libdpkg-perl=1.20.7.1 libelf1=0.183-3 libfile-stripnondeterminism-perl=1.11.0-1 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-3 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgmp10=2:6.2.1+dfsg-1 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgssapi-krb5-2=1.18.3-4 libicu67=67.1-6 libisl23=0.23-1 libitm1=10.2.1-6 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblsan0=10.2.1-6 liblz4-1=1.9.3-1 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libpam-modules=1.4.0-6 libpam-modules-bin=1.4.0-6 libpam-runtime=1.4.0-6 libpam0g=1.4.0-6 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-3 libpipeline1=1.5.3-1 libquadmath0=10.2.1-6 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsimde-dev=0.7.2-4 libsmartcols1=2.36.1-7 libssl1.1=1.1.1j-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-override-perl=0.09-2 libsystemd0=247.3-2 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtool=2.4.6-15 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-2 libunistring2=0.9.10-4 libuuid1=2.36.1-7 libxml2=2.9.10+dfsg-6.3+b1 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.19-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 patch=2.7.6-7 perl=5.32.1-3 perl-base=5.32.1-3 perl-modules-5.32=5.32.1-3 po-debconf=1.0.21+nmu1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-6 tar=1.34+dfsg-1 util-linux=2.36.1-7 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210311T143034Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d raxml=8.2.12+dfsg-6 && mkdir -p /build/raxml-cmO68A && dpkg-source --no-check -x /*.dsc /build/raxml-cmO68A/raxml-8.2.12+dfsg && cd /build/raxml-cmO68A/raxml-8.2.12+dfsg && { printf '%s' 'raxml (8.2.12+dfsg-6+b4) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * rebuild for outdated built-using -- all / amd64 / i386 Build Daemon (x86-conova-01) Thu, 11 Mar 2021 23:08:10 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/raxml-cmO68A" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/raxml-cmO68A/raxml-8.2.12+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1615504090" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/raxml-cmO68A /tmp/raxml-8.2.12+dfsg-6+b43sb6grx4 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210311T143034Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.5o92ESfydp as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.5o92ESfydp Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210311T143034Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210311T143034Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (779 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4663 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-9) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210311T143034Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.5o92ESfydp Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210311T143034Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 21s (1081 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.5o92ESfydp I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d raxml=8.2.12+dfsg-6 && mkdir -p /build/raxml-cmO68A && dpkg-source --no-check -x /*.dsc /build/raxml-cmO68A/raxml-8.2.12+dfsg && cd /build/raxml-cmO68A/raxml-8.2.12+dfsg && { printf '%s' 'raxml (8.2.12+dfsg-6+b4) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * rebuild for outdated built-using -- all / amd64 / i386 Build Daemon (x86-conova-01) Thu, 11 Mar 2021 23:08:10 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/raxml-cmO68A"' exec /tmp/mmdebstrap.5o92ESfydp Reading package lists... NOTICE: 'raxml' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/raxml.git Please use: git clone https://salsa.debian.org/med-team/raxml.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 981 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main raxml 8.2.12+dfsg-6 (dsc) [1954 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main raxml 8.2.12+dfsg-6 (tar) [959 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main raxml 8.2.12+dfsg-6 (diff) [19.5 kB] Fetched 981 kB in 1s (1204 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'raxml_8.2.12+dfsg-6.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting raxml in /build/raxml-cmO68A/raxml-8.2.12+dfsg dpkg-source: info: unpacking raxml_8.2.12+dfsg.orig.tar.xz dpkg-source: info: unpacking raxml_8.2.12+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying simde dpkg-source: info: applying hardening I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/raxml-cmO68A/raxml-8.2.12+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1615504090" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.5o92ESfydp dpkg-buildpackage: info: source package raxml dpkg-buildpackage: info: source version 8.2.12+dfsg-6+b4 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' for mfile in Makefile.PTHREADS.gcc Makefile.SSE3.PTHREADS.gcc Makefile.AVX.PTHREADS.gcc; do /usr/bin/make -f ${mfile} clean ; done make[2]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' rm -f *.o raxmlHPC-PTHREADS make[2]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' make[2]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' rm -f *.o raxmlHPC-PTHREADS-SSE3 make[2]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' make[2]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' rm -f *.o raxmlHPC-PTHREADS-AVX make[2]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' rm -rf /build/raxml-cmO68A/raxml-8.2.12+dfsg/debian/tmpbuild make[1]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_build make[1]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' mkdir -p /build/raxml-cmO68A/raxml-8.2.12+dfsg/debian/tmpbuild set -e ; for mfile in Makefile.PTHREADS.gcc Makefile.SSE3.PTHREADS.gcc Makefile.AVX.PTHREADS.gcc; do \ dh_auto_build --buildsystem=makefile -- -f ${mfile} ; \ curexe=`ls raxmlHPC* | head -n 1` ; \ if [ -e /build/raxml-cmO68A/raxml-8.2.12+dfsg/debian/tmpbuild/${curexe} ] ; then \ echo "**** ERROR: ${curexe} was created before!!" && false ; \ else \ mv ${curexe} /build/raxml-cmO68A/raxml-8.2.12+dfsg/debian/tmpbuild/${curexe} ; \ fi ; \ /usr/bin/make -f ${mfile} clean ; \ done make -j4 "INSTALL=install --strip-program=true" -f Makefile.PTHREADS.gcc make[2]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' rm -f *.o raxmlHPC-PTHREADS gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiple.o multiple.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rapidBootstrap.o rapidBootstrap.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o classify.o classify.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o fastDNAparsimony.o fastDNAparsimony.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o fastSearch.o fastSearch.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o leaveDropping.o leaveDropping.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rmqs.o rmqs.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rogueEPA.o rogueEPA.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ancestralStates.o ancestralStates.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mem_alloc.o mem_alloc.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -msse -c -o eigen.o eigen.c gcc -o raxmlHPC-PTHREADS axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o mem_alloc.o eigen.o -lm -pthread -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' make[2]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' rm -f *.o raxmlHPC-PTHREADS make[2]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' make -j4 "INSTALL=install --strip-program=true" -f Makefile.SSE3.PTHREADS.gcc make[2]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' rm -f *.o raxmlHPC-PTHREADS-SSE3 gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiple.o multiple.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rapidBootstrap.o rapidBootstrap.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o classify.o classify.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o fastDNAparsimony.o fastDNAparsimony.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o fastSearch.o fastSearch.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o leaveDropping.o leaveDropping.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rmqs.o rmqs.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rogueEPA.o rogueEPA.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ancestralStates.o ancestralStates.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mem_alloc.o mem_alloc.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -D_GNU_SOURCE -msse3 -O2 -fomit-frame-pointer -funroll-loops -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigen.o eigen.c gcc -o raxmlHPC-PTHREADS-SSE3 axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o mem_alloc.o eigen.o -lm -pthread -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' make[2]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' rm -f *.o raxmlHPC-PTHREADS-SSE3 make[2]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' make -j4 "INSTALL=install --strip-program=true" -f Makefile.AVX.PTHREADS.gcc make[2]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' rm -f *.o raxmlHPC-PTHREADS-AVX gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiple.o multiple.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rapidBootstrap.o rapidBootstrap.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o classify.o classify.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -c -o fastDNAparsimony.o fastDNAparsimony.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o fastSearch.o fastSearch.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o leaveDropping.o leaveDropping.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rmqs.o rmqs.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rogueEPA.o rogueEPA.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ancestralStates.o ancestralStates.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -c -o avxLikelihood.o avxLikelihood.c gcc -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mem_alloc.o mem_alloc.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/raxml-cmO68A/raxml-8.2.12+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D__AVX -mavx -msse3 -c -o eigen.o eigen.c gcc -o raxmlHPC-PTHREADS-AVX axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rmqs.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o eigen.o -lm -pthread -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' make[2]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' rm -f *.o raxmlHPC-PTHREADS-AVX make[2]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' make[1]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a dh_installdirs -a debian/rules override_dh_install make[1]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' dh_install dh_install debian/bin/raxmlHPC usr/bin make[1]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' dh_installexamples # fix perl path in example scripts for pscript in `ls usefulScripts/*.pl` ; do \ sed 's?/usr/local/bin/perl?/usr/bin/perl?' ${pscript} > /build/raxml-cmO68A/raxml-8.2.12+dfsg/debian/raxml/usr/share/doc/raxml/examples/`basename ${pscript}` ; \ done make[1]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' debian/rules override_dh_installman make[1]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' dh_installman for cexe in `ls /build/raxml-cmO68A/raxml-8.2.12+dfsg/debian/tmpbuild/raxmlHPC*` ; do \ curexe=`basename ${cexe}` ; \ if [ ${curexe} != raxmlHPC ] ; then \ ln -s raxmlHPC.1.gz /build/raxml-cmO68A/raxml-8.2.12+dfsg/debian/raxml/usr/share/man/man1/${curexe}.1.gz ; \ fi ; \ done make[1]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a debian/rules override_dh_gencontrol make[1]: Entering directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-4), " make[1]: Leaving directory '/build/raxml-cmO68A/raxml-8.2.12+dfsg' dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'raxml' in '../raxml_8.2.12+dfsg-6+b4_amd64.deb'. dpkg-deb: building package 'raxml-dbgsym' in '../raxml-dbgsym_8.2.12+dfsg-6+b4_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../raxml_8.2.12+dfsg-6+b4_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/raxml-cmO68A /tmp/raxml-8.2.12+dfsg-6+b43sb6grx4 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.5o92ESfydp... I: success in 598.7581 seconds md5: raxml-dbgsym_8.2.12+dfsg-6+b4_amd64.deb: OK md5: raxml_8.2.12+dfsg-6+b4_amd64.deb: OK sha1: raxml-dbgsym_8.2.12+dfsg-6+b4_amd64.deb: OK sha1: raxml_8.2.12+dfsg-6+b4_amd64.deb: OK sha256: raxml-dbgsym_8.2.12+dfsg-6+b4_amd64.deb: OK sha256: raxml_8.2.12+dfsg-6+b4_amd64.deb: OK Checksums: OK