Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/r/rasmol/rasmol_2.7.6.0-2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/rasmol-2.7.6.0-28fan1wtq/rasmol_2.7.6.0-2_amd64.buildinfo Get source package info: rasmol=2.7.6.0-2 Source URL: http://snapshot.notset.fr/mr/package/rasmol/2.7.6.0-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=adduser=3.118 adwaita-icon-theme=3.38.0-1 autoconf=2.69-11.1 automake=1:1.16.2-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 bash-completion=1:2.11-2 binutils=2.35.1-3 binutils-common=2.35.1-3 binutils-x86-64-linux-gnu=2.35.1-3 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-19 dash=0.5.11+git20200708+dd9ef66-2 dbus=1.12.20-1 dbus-user-session=1.12.20-1 dconf-gsettings-backend=0.38.0-1 dconf-service=0.38.0-1 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 dh-autoreconf=19 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dmsetup=2:1.02.173-1 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.39-3 findutils=4.7.0+git20201010-2 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.0-1 g++-10=10.2.0-19 gcc=4:10.2.0-1 gcc-10=10.2.0-19 gcc-10-base=10.2.0-19 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gir1.2-atk-1.0=2.36.0-2 gir1.2-atspi-2.0=2.38.0-2 gir1.2-freedesktop=1.66.1-1+b1 gir1.2-gdkpixbuf-2.0=2.40.0+dfsg-8 gir1.2-glib-2.0=1.66.1-1+b1 gir1.2-gtk-3.0=3.24.23-3 gir1.2-harfbuzz-0.0=2.6.7-1 gir1.2-pango-1.0=1.46.2-3 gir1.2-vte-2.91=0.62.1-1 glib-networking=2.66.0-2 glib-networking-common=2.66.0-2 glib-networking-services=2.66.0-2 grep=3.6-1 groff-base=1.22.4-5 gsettings-desktop-schemas=3.38.0-2 gtk-update-icon-cache=3.24.23-3 gzip=1.10-2 hdf5-helpers=1.10.6+repack-2 hicolor-icon-theme=0.17-2 hostname=3.23 icu-devtools=67.1-4 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libaec-dev=1.0.4-1 libaec0=1.0.4-1 libapparmor1=2.13.5-1+b1 libarchive-zip-perl=1.68-1 libargon2-1=0~20171227-0.2 libasan6=10.2.0-19 libatk-bridge2.0-0=2.38.0-1 libatk-bridge2.0-dev=2.38.0-1 libatk1.0-0=2.36.0-2 libatk1.0-data=2.36.0-2 libatk1.0-dev=2.36.0-2 libatomic1=10.2.0-19 libatspi2.0-0=2.38.0-2 libatspi2.0-dev=2.38.0-2 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libavahi-client3=0.8-3 libavahi-common-data=0.8-3 libavahi-common3=0.8-3 libbinutils=2.35.1-3 libblkid-dev=2.36.1-2 libblkid1=2.36.1-2 libbrotli-dev=1.0.9-2+b1 libbrotli1=1.0.9-2+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-4 libc-dev-bin=2.31-4 libc6=2.31-4 libc6-dev=2.31-4 libcairo-gobject2=1.16.0-4 libcairo-script-interpreter2=1.16.0-4 libcairo2=1.16.0-4 libcairo2-dev=1.16.0-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcbf-dev=0.9.6+dfsg1-2+b1 libcbf1=0.9.6+dfsg1-2+b1 libcc1-0=10.2.0-19 libcneartree-dev=5.1.1+dfsg1-1+b1 libcneartree7=5.1.1+dfsg1-1+b1 libcolord2=1.4.5-2 libcom-err2=1.45.6-1 libcqrlib-dev=1.1.4-1+b1 libcqrlib2=1.1.4-1+b1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libcryptsetup12=2:2.3.4-1 libctf-nobfd0=2.35.1-3 libctf0=2.35.1-3 libcups2=2.3.3op1-2 libcvector-dev=1.0.4.1-1+b1 libcvector2=1.0.4.1-1+b1 libdatrie-dev=0.2.12-3 libdatrie1=0.2.12-3 libdb5.3=5.3.28+dfsg1-0.6 libdbus-1-3=1.12.20-1 libdbus-1-dev=1.12.20-1 libdconf1=0.38.0-1 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdevmapper1.02.1=2:1.02.173-1 libdpkg-perl=1.20.5 libdrm-amdgpu1=2.4.103-2 libdrm-common=2.4.103-2 libdrm-intel1=2.4.103-2 libdrm-nouveau2=2.4.103-2 libdrm-radeon1=2.4.103-2 libdrm2=2.4.103-2 libedit2=3.1-20191231-1 libegl-dev=1.3.2-1 libegl-mesa0=20.2.3-1 libegl1=1.3.2-1 libegl1-mesa-dev=20.2.3-1 libelf1=0.182-1 libepoxy-dev=1.5.4-1 libepoxy0=1.5.4-1 libevent-2.1-7=2.1.12-stable-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libffi-dev=3.3-5 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libfontconfig-dev=2.13.1-4.2 libfontconfig1=2.13.1-4.2 libfontconfig1-dev=2.13.1-4.2 libfreetype-dev=2.10.2+dfsg-4 libfreetype6=2.10.2+dfsg-4 libfreetype6-dev=2.10.2+dfsg-4 libfribidi-dev=1.0.8-2 libfribidi0=1.0.8-2 libgbm1=20.2.3-1 libgcc-10-dev=10.2.0-19 libgcc-s1=10.2.0-19 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgdk-pixbuf-2.0-0=2.40.0+dfsg-8 libgdk-pixbuf-2.0-dev=2.40.0+dfsg-8 libgdk-pixbuf2.0-bin=2.40.0+dfsg-8 libgdk-pixbuf2.0-common=2.40.0+dfsg-8 libgfortran5=10.2.0-19 libgirepository-1.0-1=1.66.1-1+b1 libgl-dev=1.3.2-1 libgl1=1.3.2-1 libgl1-mesa-dev=20.2.3-1 libgl1-mesa-dri=20.2.3-1 libglapi-mesa=20.2.3-1 libgles-dev=1.3.2-1 libgles1=1.3.2-1 libgles2=1.3.2-1 libglib2.0-0=2.66.3-1 libglib2.0-bin=2.66.3-1 libglib2.0-data=2.66.3-1 libglib2.0-dev=2.66.3-1 libglib2.0-dev-bin=2.66.3-1 libglvnd-dev=1.3.2-1 libglvnd0=1.3.2-1 libglx-dev=1.3.2-1 libglx-mesa0=20.2.3-1 libglx0=1.3.2-1 libgmp-dev=2:6.2.1+dfsg-1 libgmp10=2:6.2.1+dfsg-1 libgmpxx4ldbl=2:6.2.1+dfsg-1 libgnutls-dane0=3.6.15-4 libgnutls-openssl27=3.6.15-4 libgnutls28-dev=3.6.15-4 libgnutls30=3.6.15-4 libgnutlsxx28=3.6.15-4 libgomp1=10.2.0-19 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgraphite2-dev=1.3.14-1 libgssapi-krb5-2=1.18.3-4 libgtk-3-0=3.24.23-3 libgtk-3-common=3.24.23-3 libgtk-3-dev=3.24.23-3 libharfbuzz-dev=2.6.7-1 libharfbuzz-gobject0=2.6.7-1 libharfbuzz-icu0=2.6.7-1 libharfbuzz0b=2.6.7-1 libhdf5-103-1=1.10.6+repack-2 libhdf5-cpp-103-1=1.10.6+repack-2 libhdf5-dev=1.10.6+repack-2 libhdf5-fortran-102=1.10.6+repack-2 libhdf5-hl-100=1.10.6+repack-2 libhdf5-hl-cpp-100=1.10.6+repack-2 libhdf5-hl-fortran-100=1.10.6+repack-2 libhogweed6=3.6-2 libice-dev=2:1.0.10-1 libice6=2:1.0.10-1 libicu-dev=67.1-4 libicu67=67.1-4 libidn2-0=2.3.0-4 libidn2-dev=2.3.0-4 libip4tc2=1.8.6-1 libisl23=0.23-1 libitm1=10.2.0-19 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.0.5-1.1 libjpeg62-turbo=1:2.0.5-1.1 libjpeg62-turbo-dev=1:2.0.5-1.1 libjson-c5=0.15-1 libjson-glib-1.0-0=1.6.0-1 libjson-glib-1.0-common=1.6.0-1 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkmod2=27+20200310-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblcms2-2=2.9-4+b1 libllvm11=1:11.0.0-5+b1 liblsan0=10.2.0-19 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 liblzo2-2=2.10-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount-dev=2.36.1-2 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-1 libnettle8=3.6-2 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnss-nis=3.1-4 libnss-nisplus=1.3-4 libopengl-dev=1.3.2-1 libopengl0=1.3.2-1 libp11-kit-dev=0.23.21-2 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam-systemd=246.6-5 libpam0g=1.3.1-5 libpango-1.0-0=1.46.2-3 libpango1.0-dev=1.46.2-3 libpangocairo-1.0-0=1.46.2-3 libpangoft2-1.0-0=1.46.2-3 libpangoxft-1.0-0=1.46.2-3 libpciaccess0=0.16-1 libpcre16-3=2:8.39-13 libpcre2-16-0=10.34-7 libpcre2-32-0=10.34-7 libpcre2-8-0=10.34-7 libpcre2-dev=10.34-7 libpcre2-posix2=10.34-7 libpcre3=2:8.39-13 libpcre3-dev=2:8.39-13 libpcre32-3=2:8.39-13 libpcrecpp0v5=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libpixman-1-0=0.36.0-1 libpixman-1-dev=0.36.0-1 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libproxy1v5=0.4.15-15 libpsl5=0.21.0-1.1 libpthread-stubs0-dev=0.4-1 libpython3-stdlib=3.9.0-3 libpython3.9-minimal=3.9.1~rc1-2 libpython3.9-stdlib=3.9.1~rc1-2 libquadmath0=10.2.0-19 libreadline8=8.1~rc3-1 librest-0.7-0=0.8.1-1+b1 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libselinux1-dev=3.1-2+b1 libsemanage-common=3.1-1 libsemanage1=3.1-1+b1 libsensors-config=1:3.6.0-2 libsensors5=1:3.6.0-2 libsepol1=3.1-1 libsepol1-dev=3.1-1 libsigsegv2=2.12-2 libsm-dev=2:1.2.3-1 libsm6=2:1.2.3-1 libsmartcols1=2.36.1-2 libsoup-gnome2.4-1=2.72.0-2 libsoup2.4-1=2.72.0-2 libsqlite3-0=3.33.0-1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-19 libstdc++6=10.2.0-19 libsub-override-perl=0.09-2 libsystemd0=246.6-5 libsz2=1.0.4-1 libtasn1-6=4.16.0-2 libtasn1-6-dev=4.16.0-2 libthai-data=0.1.28-3 libthai-dev=0.1.28-3 libthai0=0.1.28-3 libtiff5=4.1.0+git191117-2 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtool=2.4.6-14 libtsan0=10.2.0-19 libubsan1=10.2.0-19 libuchardet0=0.0.7-1 libudev1=246.6-5 libunbound8=1.12.0-1+b1 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libvte-2.91-0=0.62.1-1 libvte-2.91-common=0.62.1-1 libvte-2.91-dev=0.62.1-1 libvulkan1=1.2.154.1-1 libwayland-bin=1.18.0-2~exp1.1 libwayland-client0=1.18.0-2~exp1.1 libwayland-cursor0=1.18.0-2~exp1.1 libwayland-dev=1.18.0-2~exp1.1 libwayland-egl1=1.18.0-2~exp1.1 libwayland-server0=1.18.0-2~exp1.1 libwebp6=0.6.1-2+b1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libx11-dev=2:1.6.12-1 libx11-xcb1=2:1.6.12-1 libxau-dev=1:1.0.8-1+b2 libxau6=1:1.0.8-1+b2 libxcb-dri2-0=1.14-2 libxcb-dri3-0=1.14-2 libxcb-glx0=1.14-2 libxcb-present0=1.14-2 libxcb-render0=1.14-2 libxcb-render0-dev=1.14-2 libxcb-shm0=1.14-2 libxcb-shm0-dev=1.14-2 libxcb-sync1=1.14-2 libxcb-xfixes0=1.14-2 libxcb1=1.14-2 libxcb1-dev=1.14-2 libxcomposite-dev=1:0.4.5-1 libxcomposite1=1:0.4.5-1 libxcursor-dev=1:1.2.0-2 libxcursor1=1:1.2.0-2 libxdamage-dev=1:1.1.5-2 libxdamage1=1:1.1.5-2 libxdmcp-dev=1:1.1.2-3 libxdmcp6=1:1.1.2-3 libxext-dev=2:1.3.3-1+b2 libxext6=2:1.3.3-1+b2 libxfixes-dev=1:5.0.3-2 libxfixes3=1:5.0.3-2 libxft-dev=2.3.2-2 libxft2=2.3.2-2 libxi-dev=2:1.7.10-1 libxi6=2:1.7.10-1 libxinerama-dev=2:1.1.4-2 libxinerama1=2:1.1.4-2 libxkbcommon-dev=1.0.3-2 libxkbcommon0=1.0.3-2 libxml2=2.9.10+dfsg-6.3 libxrandr-dev=2:1.5.1-1 libxrandr2=2:1.5.1-1 libxrender-dev=1:0.9.10-1 libxrender1=1:0.9.10-1 libxshmfence1=1.3-1 libxtst-dev=2:1.2.3-1 libxtst6=2:1.2.3-1 libxxf86vm1=1:1.1.4-1+b2 libz3-4=4.8.9-1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 mount=2.36.1-2 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 nettle-dev=3.6-2 pango1.0-tools=1.46.2-3 passwd=1:4.8.1-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 pkg-config=0.29.2-1 po-debconf=1.0.21 python3=3.9.0-3 python3-distutils=3.8.6-1 python3-lib2to3=3.8.6-1 python3-minimal=3.9.0-3 python3.9=3.9.1~rc1-2 python3.9-minimal=3.9.1~rc1-2 readline-common=8.1~rc3-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 shared-mime-info=2.0-1 systemd=246.6-5 systemd-sysv=246.6-5 systemd-timesyncd=246.6-5 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tzdata=2020d-1 ucf=3.0043 util-linux=2.36.1-2 uuid-dev=2.36.1-2 wayland-protocols=1.20-1 x11-common=1:7.7+21 x11proto-core-dev=2020.1-1 x11proto-dev=2020.1-1 x11proto-input-dev=2020.1-1 x11proto-randr-dev=2020.1-1 x11proto-record-dev=2020.1-1 x11proto-xext-dev=2020.1-1 x11proto-xinerama-dev=2020.1-1 xkb-data=2.29-2 xorg-sgml-doctools=1:1.11-1 xtrans-dev=1.4.0-1 xutils-dev=1:7.7+5+b1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201201T031901Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d rasmol=2.7.6.0-2 && mkdir -p /build/rasmol-UxonXZ && dpkg-source --no-check -x /*.dsc /build/rasmol-UxonXZ/rasmol-2.7.6.0 && chown -R builduser:builduser /build/rasmol-UxonXZ" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/rasmol-UxonXZ/rasmol-2.7.6.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1606747128" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/rasmol-UxonXZ /tmp/rasmol-2.7.6.0-28fan1wtq bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201201T031901Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.abJjXIfvMu as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.abJjXIfvMu Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201201T031901Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201201T031901Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (838 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4697 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201201T031901Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.abJjXIfvMu Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201201T031901Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1124 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.abJjXIfvMu I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d rasmol=2.7.6.0-2 && mkdir -p /build/rasmol-UxonXZ && dpkg-source --no-check -x /*.dsc /build/rasmol-UxonXZ/rasmol-2.7.6.0 && chown -R builduser:builduser /build/rasmol-UxonXZ"' exec /tmp/mmdebstrap.abJjXIfvMu Reading package lists... NOTICE: 'rasmol' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/rasmol.git Please use: git clone https://salsa.debian.org/science-team/rasmol.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 9893 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main rasmol 2.7.6.0-2 (dsc) [2198 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main rasmol 2.7.6.0-2 (tar) [9815 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main rasmol 2.7.6.0-2 (diff) [75.3 kB] Fetched 9893 kB in 8s (1283 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'rasmol_2.7.6.0-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting rasmol in /build/rasmol-UxonXZ/rasmol-2.7.6.0 dpkg-source: info: unpacking rasmol_2.7.6.0.orig.tar.gz dpkg-source: info: unpacking rasmol_2.7.6.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_imakefile.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/rasmol-UxonXZ/rasmol-2.7.6.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1606747128" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.abJjXIfvMu dpkg-buildpackage: info: source package rasmol dpkg-buildpackage: info: source version 2.7.6.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh_testdir dh_testroot if [ -f src/Makefile ] ; then /usr/bin/make -C src distclean ; fi rm -f src/rasmol-gtk src/rasmol.32 src/rasmol.16 src/rasmol.8 rm -f src/gtkui.h rm -f manualA4.pdf refcardA4.pdf rm -f x11-stamp dh clean dh_clean debian/rules binary-arch dh_testdir rm -f x11-stamp cd /build/rasmol-UxonXZ/rasmol-2.7.6.0/src ; xmkmf '-DGTKWIN -DGTK3 -Uvector' ; cd /build/rasmol-UxonXZ/rasmol-2.7.6.0 imake -DGTKWIN -DGTK3 -Uvector -DUseInstalled -I/usr/lib/X11/config /usr/bin/make -C src clean; make[1]: Entering directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' /usr/bin/make -C src make[1]: Entering directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' mkdir -p -v ../external_packages mkdir: created directory '../external_packages' gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rasmol.o rasmol.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from rasmol.c:203: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o molecule.o molecule.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from molecule.c:220: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o abstree.o abstree.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from abstree.c:81: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cmndline.o cmndline.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cmndline.c:82: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from command.c:91: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ command.c: In function ‘ApplyMapShow’: command.c:5545:123: warning: ‘ ’ directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5545 | sprintf(buffer," distance to selected van der Waals surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:867, from command.c:118: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 95 and 139 bytes into a destination of size 133 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:5555:123: warning: ‘ ’ directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5555 | sprintf(buffer," distance to selected Lee-Richards surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:867, from command.c:118: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 95 and 139 bytes into a destination of size 133 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function ‘ExecuteCommandOne.part.0’: command.c:6103:60: warning: ‘%g’ directive writing between 1 and 13 bytes into a region of size between 6 and 18 [-Wformat-overflow=] 6103 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~ command.c:6103:36: note: assuming directive output of 12 bytes 6103 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from command.c:118: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 49 bytes into a destination of size 40 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o transfor.o transfor.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from transfor.c:198: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o render.o render.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from render.c:189: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o repres.o repres.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from repres.c:234: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pixutils.o pixutils.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from pixutils.c:183: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o outfile.o outfile.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from outfile.c:170: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ outfile.c: In function ‘WriteR3DFile’: outfile.c:3003:26: warning: ‘%s’ directive writing up to 79 bytes into a region of size 22 [-Wformat-overflow=] 3003 | sprintf((char *)name,"%s",buffer); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:867, from outfile.c:191: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 80 bytes into a destination of size 22 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o script.o script.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from script.c:164: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o infile.o infile.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from infile.c:196: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1293:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1297:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1296:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1299:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1308:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1356:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadXYZMolecule’ at infile.c:1419:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadXYZMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadXYZMolecule’ at infile.c:1423:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadXYZMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadXYZMolecule’ at infile.c:1437:18: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadXYZMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1540:12: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1591:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1565:18: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1546:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1551:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1557:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1556:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadAlchemyMolecule’ at infile.c:1643:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadAlchemyMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadAlchemyMolecule’ at infile.c:1653:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadAlchemyMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadAlchemyMolecule’ at infile.c:1681:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadAlchemyMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadCharmmMolecule’ at infile.c:1715:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadCharmmMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadCharmmMolecule’ at infile.c:1727:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadCharmmMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1963:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1971:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1973:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1975:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1980:12: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1841:12, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1896:13, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1895:13, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1905:20, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1848:17, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1857:20, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMacroModelMolecule’ at infile.c:2085:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMacroModelMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMacroModelMolecule’ at infile.c:2095:10: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMacroModelMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadPDBMolecule’ at infile.c:1081:12: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadPDBMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tokens.o tokens.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif_fract.o cif_fract.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cif_fract.c:197: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif.o cif.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cif.c:278: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif_ctonum.o cif_ctonum.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cif_ctonum.c:203: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif_stx.o cif_stx.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiple.o multiple.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from multiple.c:225: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ multiple.c: In function ‘DrawMoleculeList’: multiple.c:668:45: warning: ‘%s’ directive output may be truncated writing likely 28 or more bytes into a region of size between 25 and 26 [-Wformat-truncation=] 668 | snprintf(buf, MAX_MOLNAME-4, "%d. %s", i+1, s); | ^~ multiple.c:668:40: note: assuming directive output of 28 bytes 668 | snprintf(buf, MAX_MOLNAME-4, "%d. %s", i+1, s); | ^~~~~~~~ In file included from /usr/include/stdio.h:867, from multiple.c:252: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output 4 or more bytes (assuming 33) into a destination of size 29 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vector.o vector.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from vector.c:159: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o wbrotate.o wbrotate.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from wbrotate.c:201: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maps.o maps.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:83: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o CVector_3D.o CVector_3D.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from CVector_3D.h:55, from CVector_3D.c:48: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rmsd.o rmsd.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from rmsd.c:38: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ echo "/* Automatically generated GTK ui definitions, do not edit! */" > gtkui.h echo >> gtkui.h echo "const gchar *actionmenu_str = \"\\" >> gtkui.h cat actionmenu.gtk | sed "s/$/\\\/" | sed 's/"/\\\"/g' >> gtkui.h echo "\";" >> gtkui.h echo >> gtkui.h echo "const gchar *sizechooser_str = \"\\" >> gtkui.h gtk-builder-convert -w sizechooser.glade - | sed "s/$/\\\/" | sed 's/"/\\\"/g' >> gtkui.h /bin/sh: 1: gtk-builder-convert: not found echo "\";" >> gtkui.h echo >> gtkui.h echo "const gchar *print_resolution_str = \"\\" >> gtkui.h gtk-builder-convert -w printing-resolution.glade - | sed "s/$/\\\/" | sed 's/"/\\\"/g' >> gtkui.h /bin/sh: 1: gtk-builder-convert: not found echo "\";" >> gtkui.h echo >> gtkui.h gdk-pixbuf-csource --name=rasmol_icon --struct rasmol_48x48.xpm >> gtkui.h gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gtkwin.o gtkwin.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/string.h:26, from gtkwin.c:81: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/glib-2.0/glib.h:62, from /usr/include/vte-2.91/vte/vte.h:22, from gtkwin.c:87: gtkwin.c: In function ‘build_exportdialog’: gtkwin.c:555:19: warning: too many arguments for format [-Wformat-extra-args] 555 | g_message("building size chooser failed: s", err->message); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/glib/gmessages.h:334:32: note: in definition of macro ‘g_message’ 334 | __VA_ARGS__) | ^~~~~~~~~~~ gtkwin.c: In function ‘build_gtkmenu’: gtkwin.c:1297:19: warning: too many arguments for format [-Wformat-extra-args] 1297 | g_message("building menus failed: s", error->message); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/glib-2.0/glib/gmessages.h:334:32: note: in definition of macro ‘g_message’ 334 | __VA_ARGS__) | ^~~~~~~~~~~ gtkwin.c: In function ‘UpdateGtkMoleculeList’: gtkwin.c:1233:32: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 3 [-Wformat-truncation=] 1233 | snprintf(itemname, 3, "%d", i); | ^~ gtkwin.c:1233:31: note: directive argument in the range [0, 2147483647] 1233 | snprintf(itemname, 3, "%d", i); | ^~~~ In file included from /usr/include/stdio.h:867, from gtkwin.c:82: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output between 2 and 11 bytes into a destination of size 3 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -pthread -I/usr/include/vte-2.91 -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wno-deprecated-declarations -DGTKWIN -DGTK3 -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eggfileformatchooser.o eggfileformatchooser.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/limits.h:195, from /usr/lib/gcc/x86_64-linux-gnu/10/include/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/10/include/limits.h:34, from /usr/lib/x86_64-linux-gnu/glib-2.0/include/glibconfig.h:11, from /usr/include/glib-2.0/glib/gtypes.h:32, from /usr/include/glib-2.0/glib/galloca.h:32, from /usr/include/glib-2.0/glib.h:30, from /usr/include/gtk-3.0/gdk/gdkconfig.h:13, from /usr/include/gtk-3.0/gdk/gdk.h:30, from /usr/include/gtk-3.0/gtk/gtk.h:30, from eggfileformatchooser.h:22, from eggfileformatchooser.c:19: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ eggfileformatchooser.c: In function ‘egg_file_format_chooser_init’: eggfileformatchooser.c:344:13: warning: Deprecated pre-processor symbol, replace with 344 | EggFileFormatChooserPrivate); | ^ ~~~~~~~~~~~~~~~~ rm -f rasmol gcc -o rasmol -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o CVector_3D.o rmsd.o gtkwin.o eggfileformatchooser.o -lm -lXext -lX11 -lvte-2.91 -lgio-2.0 -lgtk-3 -lpango-1.0 -lcairo -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -L/usr/lib -lcbf -L/usr/lib -lCQRlib -L/usr/lib -lCVector -L/usr/lib -lCNearTree ln -s ../doc/rasmol.1 rasmol.man rm -f rasmol._man if test -z "true" ; then \ cd `dirname rasmol` && \ ln -s `basename rasmol.man` `basename rasmol._man`; \ else \ cpp -undef -traditional -D__apploaddir__=/etc/X11/app-defaults -D__filemansuffix__=5x -D__osfilemansuffix__=5 -D__libmansuffix__=3x -D__oslibmansuffix__=3 -D__mansuffix__=1x -D__osmansuffix__=1 -D__syscallmansuffix__=2x -D__ossysmansuffix__=2 -D__gamemansuffix__=6x -D__osgamemansuffix__=6 -D__miscmansuffix__=7x -D__osmiscmansuffix__=7 -D__admmansuffix__=8x -D__osadmmansuffix__=8 -D__miscmansuffix__=7x -D__osmiscmansuffix__=7 -D__drivermansuffix__=4x -D__osdrivermansuffix__=4 -D__adminmansuffix__=8 -D__projectroot__=/usr -D__xconfigfile__=xorg.conf -D__xconfigdir__=/usr/lib/X11 -D__xlogfile__=Xorg -D__xservername__=Xorg -D__appmansuffix__=1x -D__xorgversion__="\"`echo 7 7 0 | sed -e 's/ /./g' -e 's/^/Version\\\ /'`\" \"X Version 11\"" -D__vendorversion__="`echo 7 7 0 | sed -e 's/ /./g' -e 's/^/Version\\\ /'` X.Org" \ < rasmol.man | sed -e '/^# *[0-9][0-9]* *.*$/d' -e '/^#line *[0-9][0-9]* *.*$/d' -e '/^[ ]*XCOMM$/s/XCOMM/#/' -e '/^[ ]*XCOMM[^a-zA-Z0-9_]/s/XCOMM/#/' -e '/^[ ]*XHASH/s/XHASH/#/' -e '/\@\@$/s/\@\@$/\\/' >rasmol._man; \ fi make[1]: Leaving directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' mv src/rasmol src/rasmol-gtk cd /build/rasmol-UxonXZ/rasmol-2.7.6.0/src ; xmkmf '-DX11WIN -Uvector' ; cd /build/rasmol-UxonXZ/rasmol-2.7.6.0 mv -f Makefile Makefile.bak imake -DX11WIN -Uvector -DUseInstalled -I/usr/lib/X11/config In file included from /usr/lib/X11/config/Imake.tmpl:2293, from Imakefile.c:34: /tmp/IIf.GY3qhw:125: warning: "X11WIN" redefined 125 | #define X11WIN | :4: note: this is the location of the previous definition touch x11-stamp dh_testdir /usr/bin/make -C src clean; make[1]: Entering directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' /usr/bin/make -C src DEPTHDEF=-DEIGHTBIT=1 rasmol make[1]: Entering directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rasmol.o rasmol.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from rasmol.c:203: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o molecule.o molecule.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from molecule.c:220: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o abstree.o abstree.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from abstree.c:81: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cmndline.o cmndline.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cmndline.c:82: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from command.c:91: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ command.c: In function ‘ApplyMapShow’: command.c:5545:123: warning: ‘ ’ directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5545 | sprintf(buffer," distance to selected van der Waals surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:867, from command.c:118: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 95 and 139 bytes into a destination of size 133 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:5555:123: warning: ‘ ’ directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5555 | sprintf(buffer," distance to selected Lee-Richards surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:867, from command.c:118: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 95 and 139 bytes into a destination of size 133 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function ‘ExecuteCommandOne.part.0’: command.c:6103:60: warning: ‘%g’ directive writing between 1 and 13 bytes into a region of size between 6 and 18 [-Wformat-overflow=] 6103 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~ command.c:6103:36: note: assuming directive output of 12 bytes 6103 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from command.c:118: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 49 bytes into a destination of size 40 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o transfor.o transfor.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from transfor.c:198: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o render.o render.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from render.c:189: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o repres.o repres.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from repres.c:234: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pixutils.o pixutils.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from pixutils.c:183: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o outfile.o outfile.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from outfile.c:170: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ outfile.c: In function ‘WriteR3DFile’: outfile.c:3003:26: warning: ‘%s’ directive writing up to 79 bytes into a region of size 22 [-Wformat-overflow=] 3003 | sprintf((char *)name,"%s",buffer); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:867, from outfile.c:191: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 80 bytes into a destination of size 22 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o script.o script.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from script.c:164: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o infile.o infile.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from infile.c:196: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1293:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1297:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1296:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1299:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1308:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1356:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadXYZMolecule’ at infile.c:1419:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadXYZMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadXYZMolecule’ at infile.c:1423:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadXYZMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadXYZMolecule’ at infile.c:1437:18: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadXYZMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1540:12: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1591:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1565:18: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1546:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1551:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1557:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1556:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadAlchemyMolecule’ at infile.c:1643:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadAlchemyMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadAlchemyMolecule’ at infile.c:1653:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadAlchemyMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadAlchemyMolecule’ at infile.c:1681:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadAlchemyMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadCharmmMolecule’ at infile.c:1715:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadCharmmMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadCharmmMolecule’ at infile.c:1727:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadCharmmMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1963:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1971:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1973:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1975:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1980:12: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1841:12, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1896:13, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1895:13, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1905:20, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1848:17, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1857:20, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMacroModelMolecule’ at infile.c:2085:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMacroModelMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMacroModelMolecule’ at infile.c:2095:10: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMacroModelMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadPDBMolecule’ at infile.c:1081:12: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadPDBMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tokens.o tokens.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif_fract.o cif_fract.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cif_fract.c:197: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif.o cif.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cif.c:278: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif_ctonum.o cif_ctonum.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cif_ctonum.c:203: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif_stx.o cif_stx.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiple.o multiple.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from multiple.c:225: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ multiple.c: In function ‘DrawMoleculeList’: multiple.c:668:45: warning: ‘%s’ directive output may be truncated writing likely 28 or more bytes into a region of size between 25 and 26 [-Wformat-truncation=] 668 | snprintf(buf, MAX_MOLNAME-4, "%d. %s", i+1, s); | ^~ multiple.c:668:40: note: assuming directive output of 28 bytes 668 | snprintf(buf, MAX_MOLNAME-4, "%d. %s", i+1, s); | ^~~~~~~~ In file included from /usr/include/stdio.h:867, from multiple.c:252: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output 4 or more bytes (assuming 33) into a destination of size 29 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vector.o vector.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from vector.c:159: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o wbrotate.o wbrotate.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from wbrotate.c:201: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maps.o maps.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:83: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o CVector_3D.o CVector_3D.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from CVector_3D.h:55, from CVector_3D.c:48: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rmsd.o rmsd.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from rmsd.c:38: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DEIGHTBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o x11win.o x11win.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from x11win.c:235: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ x11win.c: In function ‘RegisterInterpName.constprop’: x11win.c:1191:24: warning: ‘%s’ directive writing up to 128 bytes into a region of size between 23 and 30 [-Wformat-overflow=] 1191 | sprintf(buffer,"%x %s",(int)MainWin,name); | ^~ In file included from /usr/include/stdio.h:867, from x11win.c:238: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 138 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c:1164:28: warning: ‘%s’ directive writing up to 128 bytes into a region of size between 23 and 30 [-Wformat-overflow=] 1164 | sprintf(buffer,"%x %s",(int)MainWin,name); | ^~ In file included from /usr/include/stdio.h:867, from x11win.c:238: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 138 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from x11win.c:237: In function ‘strncpy’, inlined from ‘RasOpenFonts’ at x11win.c:813:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c: In function ‘RasOpenFonts’: x11win.c:811:29: note: length computed here 811 | if (!MenuFont && (kl=strlen(menufonts))> 0 ) { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from x11win.c:237: In function ‘strncpy’, inlined from ‘RasOpenFonts’ at x11win.c:831:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c: In function ‘RasOpenFonts’: x11win.c:829:29: note: length computed here 829 | if (!MenuFont && (kl=strlen(menufonts))> 0) { | ^~~~~~~~~~~~~~~~~ x11win.c: In function ‘OpenDisplay’: x11win.c:1320:26: warning: ‘%s’ directive writing up to 128 bytes into a region of size 127 [-Wformat-overflow=] 1320 | sprintf(buffer,"{%s}",TkInterp); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:867, from x11win.c:238: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 131 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f rasmol gcc -o rasmol -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o CVector_3D.o rmsd.o x11win.o -lm -lXext -lX11 -L/usr/lib -lcbf -L/usr/lib -lCQRlib -L/usr/lib -lCVector -L/usr/lib -lCNearTree make[1]: Leaving directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' mv src/rasmol src/rasmol.8 dh_testdir /usr/bin/make -C src clean; make[1]: Entering directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' /usr/bin/make -C src DEPTHDEF=-DSIXTEENBIT=1 rasmol make[1]: Entering directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rasmol.o rasmol.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from rasmol.c:203: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o molecule.o molecule.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from molecule.c:220: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o abstree.o abstree.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from abstree.c:81: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cmndline.o cmndline.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cmndline.c:82: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from command.c:91: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ command.c: In function ‘ApplyMapShow’: command.c:5545:123: warning: ‘ ’ directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5545 | sprintf(buffer," distance to selected van der Waals surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:867, from command.c:118: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 95 and 139 bytes into a destination of size 133 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:5555:123: warning: ‘ ’ directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5555 | sprintf(buffer," distance to selected Lee-Richards surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:867, from command.c:118: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 95 and 139 bytes into a destination of size 133 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function ‘ExecuteCommandOne.part.0’: command.c:6103:60: warning: ‘%g’ directive writing between 1 and 13 bytes into a region of size between 6 and 18 [-Wformat-overflow=] 6103 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~ command.c:6103:36: note: assuming directive output of 12 bytes 6103 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from command.c:118: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 49 bytes into a destination of size 40 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o transfor.o transfor.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from transfor.c:198: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o render.o render.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from render.c:189: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o repres.o repres.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from repres.c:234: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pixutils.o pixutils.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from pixutils.c:183: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o outfile.o outfile.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from outfile.c:170: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ outfile.c: In function ‘WriteR3DFile’: outfile.c:3003:26: warning: ‘%s’ directive writing up to 79 bytes into a region of size 22 [-Wformat-overflow=] 3003 | sprintf((char *)name,"%s",buffer); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:867, from outfile.c:191: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 80 bytes into a destination of size 22 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o script.o script.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from script.c:164: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o infile.o infile.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from infile.c:196: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1293:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1297:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1296:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1299:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1308:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1356:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadXYZMolecule’ at infile.c:1419:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadXYZMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadXYZMolecule’ at infile.c:1423:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadXYZMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadXYZMolecule’ at infile.c:1437:18: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadXYZMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1540:12: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1591:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1565:18: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1546:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1551:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1557:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1556:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadAlchemyMolecule’ at infile.c:1643:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadAlchemyMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadAlchemyMolecule’ at infile.c:1653:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadAlchemyMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadAlchemyMolecule’ at infile.c:1681:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadAlchemyMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadCharmmMolecule’ at infile.c:1715:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadCharmmMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadCharmmMolecule’ at infile.c:1727:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadCharmmMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1963:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1971:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1973:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1975:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1980:12: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1841:12, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1896:13, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1895:13, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1905:20, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1848:17, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1857:20, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMacroModelMolecule’ at infile.c:2085:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMacroModelMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMacroModelMolecule’ at infile.c:2095:10: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMacroModelMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadPDBMolecule’ at infile.c:1081:12: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadPDBMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tokens.o tokens.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif_fract.o cif_fract.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cif_fract.c:197: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif.o cif.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cif.c:278: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif_ctonum.o cif_ctonum.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cif_ctonum.c:203: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif_stx.o cif_stx.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiple.o multiple.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from multiple.c:225: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ multiple.c: In function ‘DrawMoleculeList’: multiple.c:668:45: warning: ‘%s’ directive output may be truncated writing likely 28 or more bytes into a region of size between 25 and 26 [-Wformat-truncation=] 668 | snprintf(buf, MAX_MOLNAME-4, "%d. %s", i+1, s); | ^~ multiple.c:668:40: note: assuming directive output of 28 bytes 668 | snprintf(buf, MAX_MOLNAME-4, "%d. %s", i+1, s); | ^~~~~~~~ In file included from /usr/include/stdio.h:867, from multiple.c:252: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output 4 or more bytes (assuming 33) into a destination of size 29 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vector.o vector.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from vector.c:159: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o wbrotate.o wbrotate.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from wbrotate.c:201: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maps.o maps.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:83: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o CVector_3D.o CVector_3D.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from CVector_3D.h:55, from CVector_3D.c:48: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rmsd.o rmsd.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from rmsd.c:38: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DSIXTEENBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o x11win.o x11win.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from x11win.c:235: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ x11win.c: In function ‘RegisterInterpName.constprop’: x11win.c:1191:24: warning: ‘%s’ directive writing up to 128 bytes into a region of size between 23 and 30 [-Wformat-overflow=] 1191 | sprintf(buffer,"%x %s",(int)MainWin,name); | ^~ In file included from /usr/include/stdio.h:867, from x11win.c:238: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 138 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c:1164:28: warning: ‘%s’ directive writing up to 128 bytes into a region of size between 23 and 30 [-Wformat-overflow=] 1164 | sprintf(buffer,"%x %s",(int)MainWin,name); | ^~ In file included from /usr/include/stdio.h:867, from x11win.c:238: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 138 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from x11win.c:237: In function ‘strncpy’, inlined from ‘RasOpenFonts’ at x11win.c:813:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c: In function ‘RasOpenFonts’: x11win.c:811:29: note: length computed here 811 | if (!MenuFont && (kl=strlen(menufonts))> 0 ) { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from x11win.c:237: In function ‘strncpy’, inlined from ‘RasOpenFonts’ at x11win.c:831:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c: In function ‘RasOpenFonts’: x11win.c:829:29: note: length computed here 829 | if (!MenuFont && (kl=strlen(menufonts))> 0) { | ^~~~~~~~~~~~~~~~~ x11win.c: In function ‘OpenDisplay’: x11win.c:1320:26: warning: ‘%s’ directive writing up to 128 bytes into a region of size 127 [-Wformat-overflow=] 1320 | sprintf(buffer,"{%s}",TkInterp); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:867, from x11win.c:238: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 131 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f rasmol gcc -o rasmol -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o CVector_3D.o rmsd.o x11win.o -lm -lXext -lX11 -L/usr/lib -lcbf -L/usr/lib -lCQRlib -L/usr/lib -lCVector -L/usr/lib -lCNearTree make[1]: Leaving directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' mv src/rasmol src/rasmol.16 dh_testdir /usr/bin/make -C src clean; make[1]: Entering directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' rm -f rasmol._man rm -f rasmol rm -f gtkui.h rasmol.man rm -f *.CKP *.ln *.BAK *.bak *.o core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' /usr/bin/make -C src DEPTHDEF=-DTHIRTYTWOBIT=1 rasmol make[1]: Entering directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rasmol.o rasmol.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from rasmol.c:203: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o molecule.o molecule.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from molecule.c:220: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o abstree.o abstree.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from abstree.c:81: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cmndline.o cmndline.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cmndline.c:82: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o command.o command.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from command.c:91: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ command.c: In function ‘ApplyMapShow’: command.c:5545:123: warning: ‘ ’ directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5545 | sprintf(buffer," distance to selected van der Waals surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:867, from command.c:118: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 95 and 139 bytes into a destination of size 133 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c:5555:123: warning: ‘ ’ directive writing 1 byte into a region of size between 0 and 40 [-Wformat-overflow=] 5555 | sprintf(buffer," distance to selected Lee-Richards surface:\n mean %#g, min %#g, max %#g, esd %#g\n", | ^~ In file included from /usr/include/stdio.h:867, from command.c:118: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 95 and 139 bytes into a destination of size 133 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ command.c: In function ‘ExecuteCommandOne.part.0’: command.c:6103:60: warning: ‘%g’ directive writing between 1 and 13 bytes into a region of size between 6 and 18 [-Wformat-overflow=] 6103 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~ command.c:6103:36: note: assuming directive output of 12 bytes 6103 | sprintf(buffer," Time: %g, Delta Time: %g\n", CommandTime, CommandTime-prevtime); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from command.c:118: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 49 bytes into a destination of size 40 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o transfor.o transfor.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from transfor.c:198: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o render.o render.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from render.c:189: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o repres.o repres.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from repres.c:234: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pixutils.o pixutils.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from pixutils.c:183: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o outfile.o outfile.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from outfile.c:170: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ outfile.c: In function ‘WriteR3DFile’: outfile.c:3003:26: warning: ‘%s’ directive writing up to 79 bytes into a region of size 22 [-Wformat-overflow=] 3003 | sprintf((char *)name,"%s",buffer); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:867, from outfile.c:191: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 80 bytes into a destination of size 22 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o script.o script.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from script.c:164: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o infile.o infile.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from infile.c:196: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1293:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1297:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1296:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1299:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1308:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMDLMolecule’ at infile.c:1356:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMDLMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadXYZMolecule’ at infile.c:1419:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadXYZMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadXYZMolecule’ at infile.c:1423:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadXYZMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadXYZMolecule’ at infile.c:1437:18: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadXYZMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1540:12: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1591:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1565:18: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1546:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1551:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1557:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMol2Molecule’ at infile.c:1556:13: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMol2Molecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadAlchemyMolecule’ at infile.c:1643:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadAlchemyMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadAlchemyMolecule’ at infile.c:1653:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadAlchemyMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadAlchemyMolecule’ at infile.c:1681:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadAlchemyMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadCharmmMolecule’ at infile.c:1715:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadCharmmMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadCharmmMolecule’ at infile.c:1727:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadCharmmMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1963:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1971:9: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1973:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1975:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMOPACMolecule’ at infile.c:1980:12: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1841:12, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1896:13, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1895:13, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1905:20, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1848:17, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘ReadMOPACOutputFile’ at infile.c:1857:20, inlined from ‘LoadMOPACMolecule’ at infile.c:1967:17: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMOPACMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMacroModelMolecule’ at infile.c:2085:5: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMacroModelMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadMacroModelMolecule’ at infile.c:2095:10: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadMacroModelMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ In function ‘FetchRecord’, inlined from ‘LoadPDBMolecule’ at infile.c:1081:12: infile.c:335:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 335 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function ‘LoadPDBMolecule’: infile.c:295:19: note: at offset 256 to object ‘Record’ with size 256 declared here 295 | static char __far Record[256]; | ^~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tokens.o tokens.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:194: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif_fract.o cif_fract.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cif_fract.c:197: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif.o cif.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cif.c:278: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif_ctonum.o cif_ctonum.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from cif_ctonum.c:203: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cif_stx.o cif_stx.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:227: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiple.o multiple.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from multiple.c:225: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ multiple.c: In function ‘DrawMoleculeList’: multiple.c:668:45: warning: ‘%s’ directive output may be truncated writing likely 28 or more bytes into a region of size between 25 and 26 [-Wformat-truncation=] 668 | snprintf(buf, MAX_MOLNAME-4, "%d. %s", i+1, s); | ^~ multiple.c:668:40: note: assuming directive output of 28 bytes 668 | snprintf(buf, MAX_MOLNAME-4, "%d. %s", i+1, s); | ^~~~~~~~ In file included from /usr/include/stdio.h:867, from multiple.c:252: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: ‘__builtin___snprintf_chk’ output 4 or more bytes (assuming 33) into a destination of size 29 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vector.o vector.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from vector.c:159: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o wbrotate.o wbrotate.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdint.h:26, from /usr/lib/gcc/x86_64-linux-gnu/10/include/stdint.h:9, from rasmol.h:134, from wbrotate.c:201: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o langsel_unix.o langsel_unix.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from langsel_unix.c:114: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maps.o maps.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from maps.c:83: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o CVector_3D.o CVector_3D.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from CVector_3D.h:55, from CVector_3D.c:48: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rmsd.o rmsd.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from rmsd.c:38: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Dlinux -D__amd64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DX11WIN -DRASMOLDIR=\"/usr/share/rasmol/\" -DTHIRTYTWOBIT=1 -D_USE_RASMOL_H_ -I/usr/include/cbflib -I/usr/include/cbf -I/usr/include/hdf5/serial -I/usr/include -I/usr/include -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o x11win.o x11win.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from x11win.c:235: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ x11win.c: In function ‘RegisterInterpName.constprop’: x11win.c:1191:24: warning: ‘%s’ directive writing up to 128 bytes into a region of size between 23 and 30 [-Wformat-overflow=] 1191 | sprintf(buffer,"%x %s",(int)MainWin,name); | ^~ In file included from /usr/include/stdio.h:867, from x11win.c:238: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 138 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c:1164:28: warning: ‘%s’ directive writing up to 128 bytes into a region of size between 23 and 30 [-Wformat-overflow=] 1164 | sprintf(buffer,"%x %s",(int)MainWin,name); | ^~ In file included from /usr/include/stdio.h:867, from x11win.c:238: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 138 bytes into a destination of size 32 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from x11win.c:237: In function ‘strncpy’, inlined from ‘RasOpenFonts’ at x11win.c:813:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c: In function ‘RasOpenFonts’: x11win.c:811:29: note: length computed here 811 | if (!MenuFont && (kl=strlen(menufonts))> 0 ) { | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from x11win.c:237: In function ‘strncpy’, inlined from ‘RasOpenFonts’ at x11win.c:831:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin___strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x11win.c: In function ‘RasOpenFonts’: x11win.c:829:29: note: length computed here 829 | if (!MenuFont && (kl=strlen(menufonts))> 0) { | ^~~~~~~~~~~~~~~~~ x11win.c: In function ‘OpenDisplay’: x11win.c:1320:26: warning: ‘%s’ directive writing up to 128 bytes into a region of size 127 [-Wformat-overflow=] 1320 | sprintf(buffer,"{%s}",TkInterp); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:867, from x11win.c:238: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 131 bytes into a destination of size 128 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f rasmol gcc -o rasmol -g -O2 -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/build/rasmol-UxonXZ/rasmol-2.7.6.0/src=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel_unix.o maps.o CVector_3D.o rmsd.o x11win.o -lm -lXext -lX11 -L/usr/lib -lcbf -L/usr/lib -lCQRlib -L/usr/lib -lCVector -L/usr/lib -lCNearTree make[1]: Leaving directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0/src' mv src/rasmol src/rasmol.32 dh binary-arch --with bash-completion debian/rules build-arch make[1]: Entering directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0' make[1]: Nothing to be done for 'build-arch'. make[1]: Leaving directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0' dh_testroot -a dh_prep -a debian/rules override_dh_install make[1]: Entering directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0' dh_install -Xrasmollogo_22Jun99.jpg make[1]: Leaving directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0' dh_installchangelogs ChangeLog.txt make[1]: Leaving directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0' dh_installman -a dh_bash-completion -a dh_installmime -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0' dh_compress -X.pdf make[1]: Leaving directory '/build/rasmol-UxonXZ/rasmol-2.7.6.0' dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'rasmol-dbgsym' in '../rasmol-dbgsym_2.7.6.0-2_amd64.deb'. dpkg-deb: building package 'rasmol' in '../rasmol_2.7.6.0-2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../rasmol_2.7.6.0-2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/rasmol-UxonXZ /tmp/rasmol-2.7.6.0-28fan1wtq I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.abJjXIfvMu... I: success in 937.3086 seconds md5: rasmol-dbgsym_2.7.6.0-2_amd64.deb: OK md5: rasmol_2.7.6.0-2_amd64.deb: OK sha1: rasmol-dbgsym_2.7.6.0-2_amd64.deb: OK sha1: rasmol_2.7.6.0-2_amd64.deb: OK sha256: rasmol-dbgsym_2.7.6.0-2_amd64.deb: OK sha256: rasmol_2.7.6.0-2_amd64.deb: OK Checksums: OK