Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/r/rapmap/rapmap_0.15.0+dfsg-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/rapmap-0.15.0+dfsg-1kd6m_9ug/rapmap_0.15.0+dfsg-1_all.buildinfo Get source package info: rapmap=0.15.0+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/rapmap/0.15.0+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11 automake=1:1.16.1-4 autopoint=0.19.8.1-9 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.46 bash=5.0-5 binutils=2.33.1-2 binutils-common=2.33.1-2 binutils-x86-64-linux-gnu=2.33.1-2 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.8 bzip2=1.0.8-2 cmake=3.15.4-1 cmake-data=3.15.4-1 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.2.1-19 dash=0.5.10.2-6 debconf=1.5.73 debhelper=12.7.1 debianutils=4.9 dh-autoreconf=19 dh-strip-nondeterminism=1.6.2-1 diffutils=1:3.7-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-2 fdisk=2.34-0.1 file=1:5.37-6 findutils=4.7.0-1 g++=4:9.2.1-3.1 g++-9=9.2.1-19 gcc=4:9.2.1-3.1 gcc-9=9.2.1-19 gcc-9-base=9.2.1-19 gettext=0.19.8.1-9 gettext-base=0.19.8.1-9 grep=3.3-1 groff-base=1.22.4-3 gzip=1.9-3+b1 hostname=3.23 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-5 libarchive-zip-perl=1.67-1 libarchive13=3.4.0-1+b1 libasan5=9.2.1-19 libatomic1=9.2.1-19 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-2 libaudit1=1:2.8.5-2 libbinutils=2.33.1-2 libblkid1=2.34-0.1 libbrotli1=1.0.7-5 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libc-bin=2.29-3 libc-dev-bin=2.29-3 libc6=2.29-3 libc6-dev=2.29-3 libcap-ng0=0.7.9-2.1 libcc1-0=9.2.1-19 libcereal-dev=1.3.0-2 libcom-err2=1.45.4-1 libcroco3=0.6.13-1 libcurl4=7.66.0-1+b1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.250 libdebhelper-perl=12.7.1 libdivsufsort-dev=2.0.1-4 libdivsufsort3=2.0.1-4 libdpkg-perl=1.19.7 libelf1=0.176-1.1 libexpat1=2.2.9-1 libfdisk1=2.34-0.1 libffi6=3.2.1-9 libfile-stripnondeterminism-perl=1.6.2-1 libgcc-9-dev=9.2.1-19 libgcc1=1:9.2.1-19 libgcrypt20=1.8.5-3 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libglib2.0-0=2.62.2-3 libgmp10=2:6.1.2+dfsg-4 libgnutls30=3.6.10-4 libgomp1=9.2.1-19 libgpg-error0=1.36-7 libgssapi-krb5-2=1.17-6 libhogweed5=3.5.1+really3.5.1-2 libicu63=63.2-2 libidn2-0=2.2.0-2 libisl21=0.21-2 libitm1=9.2.1-19 libjellyfish-2.0-2=2.3.0-2+b1 libjellyfish-2.0-dev=2.3.0-2+b1 libjemalloc-dev=5.2.1-1 libjemalloc2=5.2.1-1 libjsoncpp1=1.7.4-3+b1 libk5crypto3=1.17-6 libkeyutils1=1.6-6 libkrb5-3=1.17-6 libkrb5support0=1.17-6 libldap-2.4-2=2.4.48+dfsg-1+b2 libldap-common=2.4.48+dfsg-1 liblsan0=9.2.1-19 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.37-6 libmagic1=1:5.37-6 libmount1=2.34-0.1 libmpc3=1.1.0-1 libmpdec2=2.4.2-2 libmpfr6=4.0.2-1 libncurses6=6.1+20191019-1 libncursesw6=6.1+20191019-1 libnettle7=3.5.1+really3.5.1-2 libnghttp2-14=1.39.2-1 libp11-kit0=0.23.18.1-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.32-5+b1 libpcre3=2:8.39-12+b1 libperl5.30=5.30.0-9 libpipeline1=1.5.1-2 libprocps7=2:3.3.15-2+b1 libpsl5=0.20.2-2 libpython3-stdlib=3.7.5-1 libpython3.7-minimal=3.7.5-2 libpython3.7-stdlib=3.7.5-2 libquadmath0=9.2.1-19 libreadline8=8.0-3 librhash0=1.3.8-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2=2.1.27+dfsg-1 libsasl2-modules-db=2.1.27+dfsg-1 libseccomp2=2.4.2-1 libselinux1=2.9-3 libsigsegv2=2.12-2 libsmartcols1=2.34-0.1 libsparsehash-dev=2.0.3-1 libspdlog-dev=1:1.3.1-1 libsqlite3-0=3.30.1-1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1d-2 libstdc++-9-dev=9.2.1-19 libstdc++6=9.2.1-19 libsub-override-perl=0.09-2 libsystemd0=243-5 libtasn1-6=4.14-3 libtclap-dev=1.2.2-1+b1 libtinfo6=6.1+20191019-1 libtool=2.4.6-11 libtsan0=9.2.1-19 libubsan1=9.2.1-19 libuchardet0=0.0.6-3 libudev1=243-5 libunistring2=0.9.10-2 libuuid1=2.34-0.1 libuv1=1.33.1-2 libxml2=2.9.4+dfsg1-7+b3 libzstd1=1.4.3+dfsg-1 linux-libc-dev=5.3.9-2 login=1:4.7-2 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-1.2 man-db=2.9.0-1 mawk=1.3.3-17+b3 mime-support=3.64 ncurses-base=6.1+20191019-1 ncurses-bin=6.1+20191019-1 patch=2.7.6-6 perl=5.30.0-9 perl-base=5.30.0-9 perl-modules-5.30=5.30.0-9 pkg-config=0.29-6 po-debconf=1.0.21 procps=2:3.3.15-2+b1 python3=3.7.5-1 python3-attr=18.2.0-1 python3-markdown=3.1.1-2 python3-minimal=3.7.5-1 python3-packaging=19.1-2 python3-pkg-resources=41.4.0-1 python3-pyparsing=2.4.2-1 python3-six=1.13.0-1 python3.7=3.7.5-2 python3.7-minimal=3.7.5-2 readline-common=8.0-3 sed=4.7-1 sensible-utils=0.0.12 sysvinit-utils=2.96-1 tar=1.30+dfsg-6+b1 util-linux=2.34-0.1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-1+b1 zlib1g-dev=1:1.2.11.dfsg-1+b1 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20191114T152956Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d rapmap=0.15.0+dfsg-1 && mkdir -p /build/rapmap-L9Z3Sf && dpkg-source --no-check -x /*.dsc /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg && chown -R builduser:builduser /build/rapmap-L9Z3Sf" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1573739115" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/rapmap-L9Z3Sf /tmp/rapmap-0.15.0+dfsg-1kd6m_9ug bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20191114T152956Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.Nw40S2CDnm as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.Nw40S2CDnm Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20191114T152956Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20191114T152956Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (1130 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4504 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.29-3) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20191114T152956Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.Nw40S2CDnm Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20191114T152956Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 23s (990 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.Nw40S2CDnm I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d rapmap=0.15.0+dfsg-1 && mkdir -p /build/rapmap-L9Z3Sf && dpkg-source --no-check -x /*.dsc /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg && chown -R builduser:builduser /build/rapmap-L9Z3Sf"' exec /tmp/mmdebstrap.Nw40S2CDnm Reading package lists... NOTICE: 'rapmap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/rapmap.git Please use: git clone https://salsa.debian.org/med-team/rapmap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 638 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main rapmap 0.15.0+dfsg-1 (dsc) [2319 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main rapmap 0.15.0+dfsg-1 (tar) [625 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main rapmap 0.15.0+dfsg-1 (diff) [10.9 kB] Fetched 638 kB in 1s (1078 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'rapmap_0.15.0+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting rapmap in /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg dpkg-source: info: unpacking rapmap_0.15.0+dfsg.orig.tar.xz dpkg-source: info: unpacking rapmap_0.15.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-debian-libs.patch dpkg-source: info: applying use_shared_libs.patch dpkg-source: info: applying avoid_privacy_breach.patch dpkg-source: info: applying spelling dpkg-source: info: applying portable_pause dpkg-source: info: applying no_gomp_needed I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1573739115" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.Nw40S2CDnm dpkg-buildpackage: info: source package rapmap dpkg-buildpackage: info: source version 0.15.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg' dh_clean README.html sample_data/sample_quasi_index/ sample_data/sample_quasi_index_ph/ sample_data/sample_quasi_map.sam sample_data/sample_quasi_map_ph.sam make[1]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg' debian/rules build-indep dh build-indep dh_update_autotools_config -i dh_autoreconf -i debian/rules override_dh_auto_configure make[1]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg' dh_auto_configure -- -DJELLYFISH_ROOT=/usr -DNO_NATIVE_ARCH=true cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DJELLYFISH_ROOT=/usr -DNO_NATIVE_ARCH=true .. CC: gcc CC version: -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done version: 0.6.0 -- DISABLING NATIVE ARCH. -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE Making Default build type -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Found Cereal: /usr/include (Required is at least version "1.2.2") -- Cereal found (include: /usr/include) -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29") -- Found Jemalloc: /usr/lib/x86_64-linux-gnu/libjemalloc.so (found version "5.2.1-0-gea6b3e973b477b8061e0076bb257dbd7f3faa756") Found Jemalloc library --- using this memory allocator CPACK_SOURCE_IGNORE_FILES = .git/ -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR JELLYFISH_ROOT -- Build files have been written to: /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg -B/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/ksw2pp_sse4.dir/build.make src/CMakeFiles/ksw2pp_sse4.dir/depend make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/depend make[4]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ksw2pp_sse4.dir/DependInfo.cmake --color= make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/depend make[4]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ksw2pp_basic.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ksw2pp_sse2.dir/DependInfo.cmake --color= Scanning dependencies of target ksw2pp_sse2 Scanning dependencies of target ksw2pp_sse4 make[4]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/build make[4]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target ksw2pp_basic make[4]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/ksw2pp_sse4.dir/build.make src/CMakeFiles/ksw2pp_sse4.dir/build make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/build make[4]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' [ 6%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o [ 13%] Building C object src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extd2_sse.c.o [ 13%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o [ 3%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -msse2 -mno-sse4.1 -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd2_sse.c cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/kalloc.c cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -msse2 -mno-sse4.1 -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extf2_sse.c cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -msse4.1 -o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extd2_sse.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd2_sse.c [ 17%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd.c [ 20%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -msse2 -mno-sse4.1 -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extz2_sse.c [ 24%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extz.c [ 27%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg.c [ 31%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg2.c [ 34%] Building C object src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extf2_sse.c.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -msse4.1 -o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extf2_sse.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extf2_sse.c make[4]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' [ 34%] Built target ksw2pp_sse2 [ 37%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg2_sse.c [ 41%] Building CXX object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/KSW2Aligner.cpp [ 44%] Building C object src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extz2_sse.c.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -msse4.1 -o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extz2_sse.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extz2_sse.c make[4]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target ksw2pp_sse4 make[4]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target ksw2pp_basic make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/depend make[4]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ksw2pp.dir/DependInfo.cmake --color= Scanning dependencies of target ksw2pp make[4]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/build make[4]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' [ 48%] Linking CXX static library libksw2pp.a cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/ksw2pp.dir/cmake_clean_target.cmake cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksw2pp.dir/link.txt --verbose=1 /usr/bin/ar qc libksw2pp.a CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extd2_sse.c.o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extf2_sse.c.o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extz2_sse.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o /usr/bin/ranlib libksw2pp.a make[4]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' [ 48%] Built target ksw2pp make -f src/CMakeFiles/rapmap.dir/build.make src/CMakeFiles/rapmap.dir/depend make[4]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/rapmap.dir/DependInfo.cmake --color= Scanning dependencies of target rapmap make[4]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/rapmap.dir/build.make src/CMakeFiles/rapmap.dir/build make[4]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' [ 55%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o [ 55%] Building CXX object src/CMakeFiles/rapmap.dir/RapMap.cpp.o [ 58%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function 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-Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp [ 62%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapUtils.cpp.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/rapmap.dir/RapMapUtils.cpp.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/RapMapUtils.cpp In file included from /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include/zstr/zstr.hpp:16, from /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:62: /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include/zstr/strict_fstream.hpp: In static member function ‘static void strict_fstream::detail::static_method_holder::check_peek(std::istream*, const string&, std::ios_base::openmode)’: /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include/zstr/strict_fstream.hpp:128:39: warning: catching polymorphic type ‘class std::ios_base::failure’ by value [-Wcatch-value=] 128 | catch (std::ios_base::failure e) {} | ^ [ 65%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/RapMapFileSystem.cpp [ 68%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/RapMapSAIndex.cpp [ 72%] Building CXX object src/CMakeFiles/rapmap.dir/HitManager.cpp.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/rapmap.dir/HitManager.cpp.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/HitManager.cpp [ 75%] Building CXX object src/CMakeFiles/rapmap.dir/FastxParser.cpp.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/rapmap.dir/FastxParser.cpp.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/FastxParser.cpp [ 79%] Building CXX object src/CMakeFiles/rapmap.dir/rank9b.cpp.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/rapmap.dir/rank9b.cpp.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/rank9b.cpp [ 82%] Building CXX object src/CMakeFiles/rapmap.dir/stringpiece.cc.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/rapmap.dir/stringpiece.cc.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/stringpiece.cc [ 86%] Building C object src/CMakeFiles/rapmap.dir/xxhash.c.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/rapmap.dir/xxhash.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/xxhash.c [ 89%] Building C object src/CMakeFiles/rapmap.dir/bit_array.c.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/rapmap.dir/bit_array.c.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/bit_array.c [ 93%] Building CXX object src/CMakeFiles/rapmap.dir/edlib.cpp.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/rapmap.dir/edlib.cpp.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/edlib.cpp [ 96%] Building CXX object src/CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/digestpp -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/cereal/include -I/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/include -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -c /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src/metro/metrohash64.cpp At global scope: cc1plus: warning: unrecognized command line option ‘-Wno-unused-local-typedef’ [100%] Linking CXX executable rapmap cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/rapmap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wl,-z,relro -Wl,-z,now CMakeFiles/rapmap.dir/RapMap.cpp.o CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o CMakeFiles/rapmap.dir/RapMapUtils.cpp.o CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o CMakeFiles/rapmap.dir/RapMapFileSystem.cpp.o CMakeFiles/rapmap.dir/RapMapSAIndex.cpp.o CMakeFiles/rapmap.dir/HitManager.cpp.o CMakeFiles/rapmap.dir/FastxParser.cpp.o CMakeFiles/rapmap.dir/rank9b.cpp.o CMakeFiles/rapmap.dir/stringpiece.cc.o CMakeFiles/rapmap.dir/xxhash.c.o CMakeFiles/rapmap.dir/bit_array.c.o CMakeFiles/rapmap.dir/edlib.cpp.o CMakeFiles/rapmap.dir/metro/metrohash64.cpp.o -o rapmap -L/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/lib -L/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/external/install/lib -Wl,-rpath,"\$ORIGIN/../lib:\$ORIGIN/../../lib:\$ORIGIN/:\$ORIGIN/../../external/install/lib" /usr/lib/x86_64-linux-gnu/libz.so -ldivsufsort -ldivsufsort64 -lm -lrt /usr/lib/x86_64-linux-gnu/libjemalloc.so -lpthread -lrt libksw2pp.a -ldl /usr/lib/x86_64-linux-gnu/libjemalloc.so -lpthread -ldl make[4]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target rapmap make[3]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' python3 -m markdown -f README.html README.md make[1]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg' dh_auto_test -i cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 make[1]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j4 Test project /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu Start 1: quasi_map_test Start 2: quasi_map_test_ph 1/2 Test #1: quasi_map_test ................... Passed 0.41 sec 2/2 Test #2: quasi_map_test_ph ................ Passed 0.54 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 0.57 sec make[1]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-indep dh binary-indep dh_testroot -i dh_prep -i dh_auto_install -i cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/build/rapmap-L9Z3Sf/rapmap-0.15.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg -B/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/ksw2pp_sse4.dir/build.make src/CMakeFiles/ksw2pp_sse4.dir/depend make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/depend make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/depend make[3]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ksw2pp_sse4.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ksw2pp_sse2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ksw2pp_basic.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/build make -f src/CMakeFiles/ksw2pp_sse4.dir/build.make src/CMakeFiles/ksw2pp_sse4.dir/build make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/build make[3]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/ksw2pp_sse2.dir/build'. make[3]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/ksw2pp_sse4.dir/build'. make[3]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/ksw2pp_basic.dir/build'. make[3]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' [ 10%] Built target ksw2pp_sse4 [ 20%] Built target ksw2pp_sse2 [ 44%] Built target ksw2pp_basic make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/depend make[3]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/ksw2pp.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/ksw2pp.dir/build.make src/CMakeFiles/ksw2pp.dir/build make[3]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/ksw2pp.dir/build'. make[3]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' [ 48%] Built target ksw2pp make -f src/CMakeFiles/rapmap.dir/build.make src/CMakeFiles/rapmap.dir/depend make[3]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' cd /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/rapmap.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/rapmap.dir/build.make src/CMakeFiles/rapmap.dir/build make[3]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/rapmap.dir/build'. make[3]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target rapmap make[2]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/debian/tmp/usr/bin/rapmap -- Installing: /build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/debian/tmp/usr/bin/RunRapMap.sh make[1]: Leaving directory '/build/rapmap-L9Z3Sf/rapmap-0.15.0+dfsg/obj-x86_64-linux-gnu' dh_install -i dh_installdocs -i dh_installchangelogs -i dh_installman -i dh_perl -i dh_link -i dh_strip_nondeterminism -i dh_compress -i dh_fixperms -i dh_missing -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i dpkg-deb: building package 'rapmap-dev' in '../rapmap-dev_0.15.0+dfsg-1_all.deb'. dpkg-deb: building package 'rapmap-example-data' in '../rapmap-example-data_0.15.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../rapmap_0.15.0+dfsg-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/rapmap-L9Z3Sf /tmp/rapmap-0.15.0+dfsg-1kd6m_9ug I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.Nw40S2CDnm... I: success in 786.2141 seconds md5: rapmap-dev_0.15.0+dfsg-1_all.deb: OK md5: rapmap-example-data_0.15.0+dfsg-1_all.deb: OK sha1: rapmap-dev_0.15.0+dfsg-1_all.deb: OK sha1: rapmap-example-data_0.15.0+dfsg-1_all.deb: OK sha256: rapmap-dev_0.15.0+dfsg-1_all.deb: OK sha256: rapmap-example-data_0.15.0+dfsg-1_all.deb: OK Checksums: OK