Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/r/r-cran-nmf/r-cran-nmf_0.23.0-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/r-cran-nmf-0.23.0-16aial7k2/r-cran-nmf_0.23.0-1_amd64.buildinfo Get source package info: r-cran-nmf=0.23.0-1 Source URL: http://snapshot.notset.fr/mr/package/r-cran-nmf/0.23.0-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-3 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-7 binutils=2.35-2 binutils-common=2.35-2 binutils-x86-64-linux-gnu=2.35-2 bsdextrautils=2.36-3 bsdutils=1:2.36-3 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 coreutils=8.32-3 cpp=4:10.1.0-1 cpp-10=10.2.0-6 dash=0.5.10.2-7 dctrl-tools=2.24-3+b1 debconf=1.5.74 debhelper=13.2 debianutils=4.11.1 dh-autoreconf=19 dh-r=20200710 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.38-5 findutils=4.7.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.1.0-1 g++-10=10.2.0-6 gcc=4:10.1.0-1 gcc-10=10.2.0-6 gcc-10-base=10.2.0-6 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gfortran=4:10.1.0-1 gfortran-10=10.2.0-6 grep=3.4-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 icu-devtools=67.1-4 init-system-helpers=1.58 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libasan6=10.2.0-6 libatomic1=10.2.0-6 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libbinutils=2.35-2 libblas-dev=3.9.0-3 libblas3=3.9.0-3 libblkid1=2.36-3 libbrotli1=1.0.9-1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libbz2-dev=1.0.8-4 libc-bin=2.31-3 libc-dev-bin=2.31-3 libc6=2.31-3 libc6-dev=2.31-3 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2.2 libcc1-0=10.2.0-6 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35-2 libctf0=2.35-2 libcurl4=7.72.0-1 libdatrie1=0.2.12-3 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.253 libdebhelper-perl=13.2 libdpkg-perl=1.20.5 libelf1=0.180-1+b1 libexpat1=2.2.9-1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.9.0-1 libfile-which-perl=1.23-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.2+dfsg-3 libfribidi0=1.0.8-2 libgcc-10-dev=10.2.0-6 libgcc-s1=10.2.0-6 libgcrypt20=1.8.6-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran-10-dev=10.2.0-6 libgfortran5=10.2.0-6 libglib2.0-0=2.64.4-1 libgmp10=2:6.2.0+dfsg-6 libgnutls30=3.6.14-2+b1 libgomp1=10.2.0-6 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.17-10 libharfbuzz0b=2.6.7-1 libhogweed6=3.6-2 libice6=2:1.0.9-2 libicu-dev=67.1-4 libicu67=67.1-4 libidn2-0=2.3.0-1 libisl22=0.22.1-1 libitm1=10.2.0-6 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.0.5-1.1 libjpeg62-turbo=1:2.0.5-1.1 libjpeg62-turbo-dev=1:2.0.5-1.1 libk5crypto3=1.17-10 libkeyutils1=1.6.1-2 libkrb5-3=1.17-10 libkrb5support0=1.17-10 liblapack-dev=3.9.0-3 liblapack3=3.9.0-3 libldap-2.4-2=2.4.51+dfsg-1 liblsan0=10.2.0-6 liblz4-1=1.9.2-2 liblzma-dev=5.2.4-1+b1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmount1=2.36-3 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses-dev=6.2-1 libncurses5-dev=6.2-1 libncurses6=6.2-1 libncursesw6=6.2-1 libnettle8=3.6-2 libnghttp2-14=1.41.0-3 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpango-1.0-0=1.46.1-1 libpangocairo-1.0-0=1.46.1-1 libpangoft2-1.0-0=1.46.1-1 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpcre16-3=2:8.39-13 libpcre2-16-0=10.34-7 libpcre2-32-0=10.34-7 libpcre2-8-0=10.34-7 libpcre2-dev=10.34-7 libpcre2-posix2=10.34-7 libpcre3=2:8.39-13 libpcre3-dev=2:8.39-13 libpcre32-3=2:8.39-13 libpcrecpp0v5=2:8.39-13 libperl5.30=5.30.3-4 libpipeline1=1.5.3-1 libpixman-1-0=0.36.0-1 libpng-dev=1.6.37-2 libpng16-16=1.6.37-2 libpsl5=0.21.0-1.1 libquadmath0=10.2.0-6 libreadline-dev=8.0-4 libreadline8=8.0-4 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.4.3-1+b1 libselinux1=3.1-2 libsigsegv2=2.12-2 libsm6=2:1.2.3-1 libsmartcols1=2.36-3 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1g-1 libstdc++-10-dev=10.2.0-6 libstdc++6=10.2.0-6 libsub-override-perl=0.09-2 libswitch-perl=2.17-2 libsystemd0=246.4-1 libtasn1-6=4.16.0-2 libtcl8.6=8.6.10+dfsg-1 libthai-data=0.1.28-3 libthai0=0.1.28-3 libtiff5=4.1.0+git191117-2 libtinfo6=6.2-1 libtk8.6=8.6.10-1 libtool=2.4.6-14 libtsan0=10.2.0-6 libubsan1=10.2.0-6 libuchardet0=0.0.7-1 libudev1=246.4-1 libunistring2=0.9.10-4 libuuid1=2.36-3 libwebp6=0.6.1-2+b1 libx11-6=2:1.6.10-3 libx11-data=2:1.6.10-3 libxau6=1:1.0.8-1+b2 libxcb-render0=1.14-2 libxcb-shm0=1.14-2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxft2=2.3.2-2 libxml2=2.9.10+dfsg-5+b1 libxmuu1=2:1.1.2-2+b3 libxrender1=1:0.9.10-1 libxss1=1:1.2.3-1 libxt6=1:1.2.0-1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.7.17-1 littler=0.3.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2-1 ncurses-bin=6.2-1 openssl=1.1.1g-1 patch=2.7.6-6 perl=5.30.3-4 perl-base=5.30.3-4 perl-modules-5.30=5.30.3-4 pkg-config=0.29.2-1 po-debconf=1.0.21 r-base-core=4.0.2-1 r-base-dev=4.0.2-1 r-bioc-biobase=2.48.0-1 r-bioc-biocgenerics=0.34.0-1 r-cran-assertthat=0.2.1-2 r-cran-backports=1.1.9-1 r-cran-bibtex=0.4.2.2-1+b1 r-cran-biocmanager=1.30.10+dfsg-2 r-cran-callr=3.4.3-2 r-cran-cli=2.0.2-2 r-cran-cluster=2.1.0-2+b1 r-cran-codetools=0.2-16-2 r-cran-colorspace=1.4-1+dfsg-2 r-cran-crayon=1.3.4-5 r-cran-desc=1.2.0-3 r-cran-digest=0.6.25-1+b1 r-cran-doparallel=1.0.15-2 r-cran-ellipsis=0.3.1-1 r-cran-evaluate=0.14-2 r-cran-fansi=0.4.1-1+b1 r-cran-farver=2.0.3-1+b1 r-cran-foreach=1.5.0-2 r-cran-ggplot2=3.3.2+dfsg-2 r-cran-glue=1.4.2-1 r-cran-gridbase=0.4-7-5 r-cran-gtable=0.3.0+dfsg-2 r-cran-isoband=0.2.2-1 r-cran-iterators=1.0.12-2 r-cran-labeling=0.3-4 r-cran-lattice=0.20-41-1+b1 r-cran-lifecycle=0.2.0-2 r-cran-littler=0.3.11-1 r-cran-magrittr=1.5-6 r-cran-mass=7.3-52-1 r-cran-matrix=1.2-18-1+b1 r-cran-mgcv=1.8-33-1 r-cran-munsell=0.5.0-2 r-cran-nlme=3.1.149-1 r-cran-pillar=1.4.4-2 r-cran-pkgbuild=1.0.8-2 r-cran-pkgconfig=2.0.3-2 r-cran-pkgkitten=0.1.5-2 r-cran-pkgload=1.1.0-1 r-cran-pkgmaker=0.31.1-2 r-cran-plyr=1.8.6-2 r-cran-praise=1.0.0-4 r-cran-prettyunits=1.1.1-2 r-cran-processx=3.4.3-1 r-cran-ps=1.3.3-1+b1 r-cran-r6=2.4.1-2 r-cran-rcolorbrewer=1.1-2-3 r-cran-rcpp=1.0.5-1 r-cran-registry=0.5-1-2 r-cran-reshape2=1.4.4-2 r-cran-rlang=0.4.7-1 r-cran-rngtools=1.5-2 r-cran-rprojroot=1.3-2-3 r-cran-rstudioapi=0.11-2 r-cran-scales=1.1.1-1 r-cran-stringi=1.4.6-1+b2 r-cran-stringr=1.4.0-2 r-cran-testthat=2.3.2-2+b1 r-cran-tibble=3.0.3-1 r-cran-utf8=1.1.4-1+b2 r-cran-vctrs=0.3.2-1 r-cran-viridislite=0.3.0-4 r-cran-withr=2.2.0-2 r-cran-xtable=1:1.8-4-2 readline-common=8.0-4 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-4 tar=1.30+dfsg-7 tzdata=2020a-1 ucf=3.0043 unzip=6.0-25 util-linux=2.36-3 x11-common=1:7.7+20 xauth=1:1.0.10-1 xdg-utils=1.1.3-2 xz-utils=5.2.4-1+b1 zip=3.0-11+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200903T144630Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d r-cran-nmf=0.23.0-1 && mkdir -p /build/r-cran-nmf-2Ew60D && dpkg-source --no-check -x /*.dsc /build/r-cran-nmf-2Ew60D/r-cran-nmf-0.23.0 && chown -R builduser:builduser /build/r-cran-nmf-2Ew60D" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-cran-nmf-2Ew60D/r-cran-nmf-0.23.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1599129843" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/r-cran-nmf-2Ew60D /tmp/r-cran-nmf-0.23.0-16aial7k2 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200903T144630Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap._qMI7iN7Dd as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap._qMI7iN7Dd Reading package lists... Building dependency tree... util-linux is already the newest version (2.36-3). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200903T144630Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200903T144630Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (269 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4577 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-3) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200903T144630Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap._qMI7iN7Dd Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20200903T144630Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1157 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap._qMI7iN7Dd I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d r-cran-nmf=0.23.0-1 && mkdir -p /build/r-cran-nmf-2Ew60D && dpkg-source --no-check -x /*.dsc /build/r-cran-nmf-2Ew60D/r-cran-nmf-0.23.0 && chown -R builduser:builduser /build/r-cran-nmf-2Ew60D"' exec /tmp/mmdebstrap._qMI7iN7Dd Reading package lists... NOTICE: 'r-cran-nmf' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-cran-nmf.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-cran-nmf.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1592 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main r-cran-nmf 0.23.0-1 (dsc) [2294 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main r-cran-nmf 0.23.0-1 (tar) [1587 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main r-cran-nmf 0.23.0-1 (diff) [3332 B] Fetched 1592 kB in 1s (1217 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'r-cran-nmf_0.23.0-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting r-cran-nmf in /build/r-cran-nmf-2Ew60D/r-cran-nmf-0.23.0 dpkg-source: info: unpacking r-cran-nmf_0.23.0.orig.tar.gz dpkg-source: info: unpacking r-cran-nmf_0.23.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-detection-of-cores.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-cran-nmf-2Ew60D/r-cran-nmf-0.23.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1599129843" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap._qMI7iN7Dd dpkg-buildpackage: info: source package r-cran-nmf dpkg-buildpackage: info: source version 0.23.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R Package: NMF Version: 0.23.0 I: Building using R version 4.0.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 03 Sep 2020 12:44:03 +0200 mkdir -p /build/r-cran-nmf-2Ew60D/r-cran-nmf-0.23.0/debian/r-cran-nmf/usr/lib/R/site-library R CMD INSTALL -l /build/r-cran-nmf-2Ew60D/r-cran-nmf-0.23.0/debian/r-cran-nmf/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 03 Sep 2020 12:44:03 +0200'" * installing *source* package ‘NMF’ ... files ‘R/options.R’, ‘R/parallel.R’ have the wrong MD5 checksums ** using staged installation ** libs make[1]: Entering directory '/build/r-cran-nmf-2Ew60D/r-cran-nmf-0.23.0/src' g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-OT058M/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distance.cpp -o distance.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-OT058M/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c divergence.cpp -o divergence.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-OT058M/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c euclidean.cpp -o euclidean.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-OT058M/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-OT058M/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o NMF.so distance.o divergence.o euclidean.o registerDynamicSymbol.o utils.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/r-cran-nmf-2Ew60D/r-cran-nmf-0.23.0/src' make[1]: Entering directory '/build/r-cran-nmf-2Ew60D/r-cran-nmf-0.23.0/src' make[1]: Leaving directory '/build/r-cran-nmf-2Ew60D/r-cran-nmf-0.23.0/src' installing to /build/r-cran-nmf-2Ew60D/r-cran-nmf-0.23.0/debian/r-cran-nmf/usr/lib/R/site-library/00LOCK-r-cran-nmf-0.23.0/00new/NMF/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Setting package specific options: package:NMF (10 default option(s)) Creating a generic function for ‘plot’ from ‘graphics’ in package ‘NMF’ (from the saved implicit definition) Creating meta registry in package 'NMF' ... OK Creating registry 'algorithm' in package 'NMF' ... OK Registering NMF algorithm '.R#brunet' [NMFStrategyIterative] ... OK Registering NMF algorithm 'brunet' [NMFStrategyIterative] based on template '.R#brunet' ... OK Registering NMF algorithm 'KL' [NMFStrategyIterative] ... OK Registering NMF algorithm '.R#lee' [NMFStrategyIterative] ... OK Registering NMF algorithm 'lee' [NMFStrategyIterative] based on template '.R#lee' ... OK Registering NMF algorithm 'Frobenius' [NMFStrategyIterative] ... OK Registering NMF algorithm '.R#offset' [NMFStrategyIterative] ... OK Registering NMF algorithm 'offset' [NMFStrategyIterative] based on template '.R#offset' ... OK Registering NMF algorithm '.R#nsNMF' [NMFStrategyIterative] ... OK Registering NMF algorithm 'nsNMF' [NMFStrategyIterative] based on template '.R#nsNMF' ... OK Registering NMF algorithm 'ls-nmf' [NMFStrategyIterative] ... OK Registering NMF algorithm 'pe-nmf' [NMFStrategyIterative] ... OK Registering NMF algorithm '.siNMF' [NMFStrategyIterative] based on template 'lee' ... OK Registering NMF algorithm 'siNMF' [NMFStrategyIterative] based on template 'lee' ... OK Registering NMF algorithm 'snmf/r' [NMFStrategyFunction] ... OK Registering NMF algorithm 'snmf/l' [NMFStrategyFunction] ... OK Registering extra action 'bigmemory' for handler 'install.packages' ... OK Creating registry 'pkgmaker::extra_action' in package 'NMF' ... OK Adding entry 'bigmemory' in registry 'NMF::pkgmaker::extra_action' ... OK Registering extra action 'synchronicity' for handler 'install.packages' ... OK Adding entry 'synchronicity' in registry 'NMF::pkgmaker::extra_action' ... OK Creating registry 'seed' in package 'NMF' ... OK Registering NMF seeding method 'none' [NMFSeed] ... OK Registering NMF seeding method 'random' [NMFSeed] ... OK Registering NMF seeding method 'ica' [NMFSeed] ... OK Registering NMF seeding method 'nndsvd' [NMFSeed] ... OK ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NMF) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303. W: Ignoring specified R dependency: R (>= 3.0.0) I: Using r-cran-pkgmaker for Depends:pkgmaker (>= 0.20) I: Using r-cran-registry for Depends:registry I: Using r-cran-rngtools for Depends:rngtools (>= 1.2.3) I: Using r-cran-cluster for Depends:cluster I: Using r-cran-fastica for Suggests:fastICA W: Cannot find a debian package for Suggests:doMPI I: Using r-cran-bigmemory for Suggests:bigmemory (>= 4.2) W: Cannot find a debian package for Suggests:synchronicity (>= 1.3.2) I: Using r-cran-corpcor for Suggests:corpcor I: Using r-cran-xtable for Suggests:xtable I: Using r-cran-devtools for Suggests:devtools I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-bibtex for Suggests:bibtex I: Using r-cran-runit for Suggests:RUnit W: Cannot find a debian package for Suggests:mail I: Using r-cran-stringr for Imports:stringr (>= 1.0.0) I: Using r-cran-digest for Imports:digest I: Using r-cran-gridbase for Imports:gridBase I: Using r-cran-colorspace for Imports:colorspace I: Using r-cran-rcolorbrewer for Imports:RColorBrewer I: Using r-cran-foreach for Imports:foreach I: Using r-cran-doparallel for Imports:doParallel I: Using r-cran-ggplot2 for Imports:ggplot2 I: Using r-cran-reshape2 for Imports:reshape2 I: Using r-cran-biocmanager for Imports:BiocManager I: Using r-bioc-biobase for Imports:Biobase I: Use r-cran-nmf as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -a -O--buildsystem=R dh_strip -a -a -O--buildsystem=R dh_makeshlibs -a -a -O--buildsystem=R dh_shlibdeps -a -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R dpkg-deb: building package 'r-cran-nmf-dbgsym' in '../r-cran-nmf-dbgsym_0.23.0-1_amd64.deb'. dpkg-deb: building package 'r-cran-nmf' in '../r-cran-nmf_0.23.0-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../r-cran-nmf_0.23.0-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/r-cran-nmf-2Ew60D /tmp/r-cran-nmf-0.23.0-16aial7k2 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap._qMI7iN7Dd... I: success in 518.7224 seconds md5: r-cran-nmf-dbgsym_0.23.0-1_amd64.deb: OK md5: r-cran-nmf_0.23.0-1_amd64.deb: OK sha1: r-cran-nmf-dbgsym_0.23.0-1_amd64.deb: OK sha1: r-cran-nmf_0.23.0-1_amd64.deb: OK sha256: r-cran-nmf-dbgsym_0.23.0-1_amd64.deb: OK sha256: r-cran-nmf_0.23.0-1_amd64.deb: OK Checksums: OK