Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/r/r-cran-ncdf4/r-cran-ncdf4_1.17-1+b3_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/r-cran-ncdf4-1.17-1+b3cmkn77ug/r-cran-ncdf4_1.17-1+b3_amd64.buildinfo Get source package info: r-cran-ncdf4=1.17-1 Source URL: http://snapshot.notset.fr/mr/package/r-cran-ncdf4/1.17-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-6 binutils=2.34-6 binutils-common=2.34-6 binutils-x86-64-linux-gnu=2.34-6 bsdmainutils=11.1.2+b1 bsdutils=1:2.35.1-5 build-essential=12.8 bzip2=1.0.8-2 ca-certificates=20190110 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.3.0-12 dash=0.5.10.2-7 dctrl-tools=2.24-3+b1 debconf=1.5.74 debhelper=13 debianutils=4.9.1 dh-autoreconf=19 dh-r=20200314 dh-strip-nondeterminism=1.8.0-1 diffutils=1:3.7-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-5 file=1:5.38-4 findutils=4.7.0-1 fontconfig=2.13.1-4 fontconfig-config=2.13.1-4 fonts-dejavu-core=2.37-1 g++=4:9.2.1-3.1 g++-9=9.3.0-12 gcc=4:9.2.1-3.1 gcc-10-base=10.1.0-1 gcc-9=9.3.0-12 gcc-9-base=9.3.0-12 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gfortran=4:9.2.1-3.1 gfortran-9=9.3.0-12 grep=3.4-1 groff-base=1.22.4-5 gzip=1.10-2 hdf5-helpers=1.10.6+repack-2 hostname=3.23 icu-devtools=63.2-3 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libaec-dev=1.0.4-1 libaec0=1.0.4-1 libarchive-zip-perl=1.68-1 libasan5=9.3.0-12 libatomic1=10.1.0-1 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libbinutils=2.34-6 libblas-dev=3.9.0-2 libblas3=3.9.0-2 libblkid1=2.35.1-5 libbrotli1=1.0.7-6.1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libbz2-dev=1.0.8-2 libc-bin=2.30-8 libc-dev-bin=2.30-8 libc6=2.30-8 libc6-dev=2.30-8 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2.1+b2 libcc1-0=10.1.0-1 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.16-1 libcrypt1=1:4.4.16-1 libctf-nobfd0=2.34-6 libctf0=2.34-6 libcurl3-gnutls=7.68.0-1 libcurl4=7.68.0-1 libcurl4-gnutls-dev=7.68.0-1 libdatrie1=0.2.12-3 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.252 libdebhelper-perl=13 libdpkg-perl=1.19.7 libelf1=0.176-1.1 libexpat1=2.2.9-1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.8.0-1 libfile-which-perl=1.23-1 libfontconfig1=2.13.1-4 libfreetype6=2.10.1-2 libfribidi0=1.0.8-2 libgcc-9-dev=9.3.0-12 libgcc-s1=10.1.0-1 libgcrypt20=1.8.5-5 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgfortran-9-dev=9.3.0-12 libgfortran5=10.1.0-1 libglib2.0-0=2.64.2-1 libgmp10=2:6.2.0+dfsg-4 libgnutls30=3.6.13-2 libgomp1=10.1.0-1 libgpg-error0=1.37-1 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.17-7 libharfbuzz0b=2.6.4-1 libhdf5-103-1=1.10.6+repack-2 libhdf5-cpp-103-1=1.10.6+repack-2 libhdf5-dev=1.10.6+repack-2 libhdf5-fortran-102=1.10.6+repack-2 libhdf5-hl-100=1.10.6+repack-2 libhdf5-hl-cpp-100=1.10.6+repack-2 libhdf5-hl-fortran-100=1.10.6+repack-2 libhogweed5=3.5.1+really3.5.1-2 libice6=2:1.0.9-2 libicu-dev=63.2-3 libicu63=63.2-3 libidn2-0=2.3.0-1 libisl22=0.22.1-1 libitm1=10.1.0-1 libjbig0=2.1-3.1+b2 libjpeg-dev=1:1.5.2-2 libjpeg62-turbo=1:1.5.2-2+b1 libjpeg62-turbo-dev=1:1.5.2-2+b1 libk5crypto3=1.17-7 libkeyutils1=1.6.1-2 libkrb5-3=1.17-7 libkrb5support0=1.17-7 liblapack-dev=3.9.0-2 liblapack3=3.9.0-2 libldap-2.4-2=2.4.50+dfsg-1 libldap-common=2.4.50+dfsg-1 liblsan0=10.1.0-1 liblz4-1=1.9.2-2 liblzma-dev=5.2.4-1+b1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-4 libmagic1=1:5.38-4 libmount1=2.35.1-5 libmpc3=1.1.0-1 libmpfr6=4.0.2-1 libncurses-dev=6.2-1 libncurses5-dev=6.2-1 libncurses6=6.2-1 libncursesw6=6.2-1 libnetcdf-dev=1:4.7.4-1 libnetcdf18=1:4.7.4-1 libnettle7=3.5.1+really3.5.1-2 libnghttp2-14=1.40.0-1 libp11-kit0=0.23.20-1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpango-1.0-0=1.44.7-4 libpangocairo-1.0-0=1.44.7-4 libpangoft2-1.0-0=1.44.7-4 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpcre16-3=2:8.39-12+b1 libpcre2-16-0=10.34-7 libpcre2-32-0=10.34-7 libpcre2-8-0=10.34-7 libpcre2-dev=10.34-7 libpcre2-posix2=10.34-7 libpcre3=2:8.39-12+b1 libpcre3-dev=2:8.39-12+b1 libpcre32-3=2:8.39-12+b1 libpcrecpp0v5=2:8.39-12+b1 libperl5.30=5.30.0-10 libpipeline1=1.5.2-2 libpixman-1-0=0.36.0-1 libpng-dev=1.6.37-2 libpng16-16=1.6.37-2 libpsl5=0.21.0-1 libquadmath0=10.1.0-1 libreadline-dev=8.0-4 libreadline8=8.0-4 librtmp1=2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.4.3-1+b1 libselinux1=3.0-1+b3 libsigsegv2=2.12-2 libsm6=2:1.2.3-1 libsmartcols1=2.35.1-5 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1g-1 libstdc++-9-dev=9.3.0-12 libstdc++6=10.1.0-1 libsub-override-perl=0.09-2 libswitch-perl=2.17-2 libsystemd0=245.5-2 libsz2=1.0.4-1 libtasn1-6=4.16.0-2 libtcl8.6=8.6.10+dfsg-1 libthai-data=0.1.28-3 libthai0=0.1.28-3 libtiff5=4.1.0+git191117-2 libtinfo6=6.2-1 libtk8.6=8.6.10-1 libtool=2.4.6-14 libtsan0=10.1.0-1 libubsan1=10.1.0-1 libuchardet0=0.0.6-3 libudev1=245.5-2 libunistring2=0.9.10-2 libuuid1=2.35.1-5 libwebp6=0.6.1-2+b1 libx11-6=2:1.6.9-2+b1 libx11-data=2:1.6.9-2 libxau6=1:1.0.8-1+b2 libxcb-render0=1.14-2 libxcb-shm0=1.14-2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxft2=2.3.2-2 libxml2=2.9.10+dfsg-5 libxmuu1=2:1.1.2-2+b3 libxrender1=1:0.9.10-1 libxss1=1:1.2.3-1 libxt6=1:1.1.5-1+b3 libzstd1=1.4.4+dfsg-3 linux-libc-dev=5.6.7-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-2+b1 man-db=2.9.1-1 mawk=1.3.4.20200120-2 ncurses-base=6.2-1 ncurses-bin=6.2-1 netcdf-bin=1:4.7.4-1 openssl=1.1.1g-1 patch=2.7.6-6 perl=5.30.0-10 perl-base=5.30.0-10 perl-modules-5.30=5.30.0-10 pkg-config=0.29.2-1 po-debconf=1.0.21 r-base-core=4.0.0-3 r-base-dev=4.0.0-3 readline-common=8.0-4 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-3 tar=1.30+dfsg-7 tzdata=2020a-1 ucf=3.0039 unzip=6.0-25 util-linux=2.35.1-5 x11-common=1:7.7+20 xauth=1:1.0.10-1 xdg-utils=1.1.3-2 xz-utils=5.2.4-1+b1 zip=3.0-11+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200514T144953Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d r-cran-ncdf4=1.17-1 && mkdir -p /build/r-cran-ncdf4-MBkKNr && dpkg-source --no-check -x /*.dsc /build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17 && cd /build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17 && { printf '%s' 'r-cran-ncdf4 (1.17-1+b3) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild against r-api-4.0 -- all / amd64 / i386 Build Daemon (x86-conova-01) Thu, 14 May 2020 07:10:27 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/r-cran-ncdf4-MBkKNr" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1589440227" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/r-cran-ncdf4-MBkKNr /tmp/r-cran-ncdf4-1.17-1+b3cmkn77ug bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200514T144953Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.s5GJSAlF_u as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.s5GJSAlF_u Reading package lists... Building dependency tree... util-linux is already the newest version (2.35.1-5). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200514T144953Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200514T144953Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (1072 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4482 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.30-8) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200514T144953Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.s5GJSAlF_u Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20200514T144953Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1153 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.s5GJSAlF_u I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d r-cran-ncdf4=1.17-1 && mkdir -p /build/r-cran-ncdf4-MBkKNr && dpkg-source --no-check -x /*.dsc /build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17 && cd /build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17 && { printf '%s' 'r-cran-ncdf4 (1.17-1+b3) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild against r-api-4.0 -- all / amd64 / i386 Build Daemon (x86-conova-01) Thu, 14 May 2020 07:10:27 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/r-cran-ncdf4-MBkKNr"' exec /tmp/mmdebstrap.s5GJSAlF_u Reading package lists... NOTICE: 'r-cran-ncdf4' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-cran-ncdf4.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-cran-ncdf4.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 129 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main r-cran-ncdf4 1.17-1 (dsc) [2049 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main r-cran-ncdf4 1.17-1 (tar) [124 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main r-cran-ncdf4 1.17-1 (diff) [2612 B] Fetched 129 kB in 0s (708 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'r-cran-ncdf4_1.17-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting r-cran-ncdf4 in /build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17 dpkg-source: info: unpacking r-cran-ncdf4_1.17.orig.tar.gz dpkg-source: info: unpacking r-cran-ncdf4_1.17-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_no_rpath.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1589440227" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.s5GJSAlF_u dpkg-buildpackage: info: source package r-cran-ncdf4 dpkg-buildpackage: info: source version 1.17-1+b3 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by all / amd64 / i386 Build Daemon (x86-conova-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R debian/rules override_dh_auto_configure make[1]: Entering directory '/build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17' cd tools && ./regenerate rm: cannot remove '../Makefile': No such file or directory rm: cannot remove '../src/Makevars': No such file or directory dh_auto_configure make[1]: Leaving directory '/build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17' dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R Package: ncdf4 Version: 1.17 I: Building using R version 4.0.0-3 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 14 May 2020 07:10:27 +0000 mkdir -p /build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17/debian/r-cran-ncdf4/usr/lib/R/site-library R CMD INSTALL -l /build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17/debian/r-cran-ncdf4/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 14 May 2020 07:10:27 +0000'" * installing *source* package ‘ncdf4’ ... files ‘configure’, ‘configure.ac’, ‘tools/aclocal.m4’, ‘tools/configure.ac’ have the wrong MD5 checksums ** using staged installation configure.ac: starting checking for nc-config... yes Using nc-config: nc-config Output of nc-config --all: This netCDF 4.7.4 has been built with the following features: --cc -> /usr/bin/cc --cflags -> -I/usr/include -I/usr/include/hdf5/serial --libs -> -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf --static -> -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl --has-c++ -> no --cxx -> --has-c++4 -> no --cxx4 -> --has-fortran -> no --has-dap -> yes --has-dap2 -> yes --has-dap4 -> yes --has-nc2 -> yes --has-nc4 -> yes --has-hdf5 -> yes --has-hdf4 -> no --has-logging -> no --has-pnetcdf -> no --has-szlib -> no --has-cdf5 -> yes --has-parallel4 -> no --has-parallel -> no --prefix -> /usr --includedir -> /usr/include --libdir -> /usr/lib/x86_64-linux-gnu --version -> netCDF 4.7.4 --- netcdf.m4: about to set rpath, here is source string: >-L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf< netcdf.m4: final rpath: -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial Netcdf library version: netCDF 4.7.4 Netcdf library has version 4 interface present: yes Netcdf library was compiled with C compiler: /usr/bin/cc configure: creating ./config.status config.status: creating src/Makevars ********************** Results of ncdf4 package configure ******************* netCDF v4 CPP flags = -I/usr/include -I/usr/include/hdf5/serial netCDF v4 LD flags = -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro netCDF v4 runtime path = -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial netCDF C compiler used = /usr/bin/cc R C compiler used = gcc -std=gnu99 -g -O2 -fdebug-prefix-map=/build/r-base-v2WAXB/r-base-4.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g ****************************************************************************** checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed netcdf cc arg1: /usr/bin/cc R cc arg1: gcc R_IS_GCC: 1 R_IS_CLANG: 0 NETCDF_IS_GCC: 1 NETCDF_IS_CLANG: 0 emit_warning: 0 ** libs make[1]: Entering directory '/build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -fdebug-prefix-map=/build/r-base-v2WAXB/r-base-4.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ncdf.c -o ncdf.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o ncdf4.so ncdf.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17/src' make[1]: Entering directory '/build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17/src' make[1]: Leaving directory '/build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17/src' installing to /build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17/debian/r-cran-ncdf4/usr/lib/R/site-library/00LOCK-r-cran-ncdf4-1.17/00new/ncdf4/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ncdf4) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296. debian/rules override_dh_install make[1]: Entering directory '/build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17' dh_install find debian -name HDF5_COPYING -delete make[1]: Leaving directory '/build/r-cran-ncdf4-MBkKNr/r-cran-ncdf4-1.17' dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R dpkg-deb: building package 'r-cran-ncdf4' in '../r-cran-ncdf4_1.17-1+b3_amd64.deb'. dpkg-deb: building package 'r-cran-ncdf4-dbgsym' in '../r-cran-ncdf4-dbgsym_1.17-1+b3_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../r-cran-ncdf4_1.17-1+b3_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/r-cran-ncdf4-MBkKNr /tmp/r-cran-ncdf4-1.17-1+b3cmkn77ug I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.s5GJSAlF_u... I: success in 427.2323 seconds md5: r-cran-ncdf4-dbgsym_1.17-1+b3_amd64.deb: OK md5: r-cran-ncdf4_1.17-1+b3_amd64.deb: OK sha1: r-cran-ncdf4-dbgsym_1.17-1+b3_amd64.deb: OK sha1: r-cran-ncdf4_1.17-1+b3_amd64.deb: OK sha256: r-cran-ncdf4-dbgsym_1.17-1+b3_amd64.deb: OK sha256: r-cran-ncdf4_1.17-1+b3_amd64.deb: OK Checksums: OK