Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/r/r-bioc-rhdf5lib/r-bioc-rhdf5lib_1.12.1+dfsg-3+b1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/r-bioc-rhdf5lib-1.12.1+dfsg-3+b1_elgo5cm/r-bioc-rhdf5lib_1.12.1+dfsg-3+b1_amd64.buildinfo Get source package info: r-bioc-rhdf5lib=1.12.1+dfsg-3 Source URL: http://snapshot.notset.fr/mr/package/r-bioc-rhdf5lib/1.12.1+dfsg-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-14 automake=1:1.16.3-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=11.1 base-passwd=3.5.49 bash=5.1-2+b1 binutils=2.35.2-2 binutils-common=2.35.2-2 binutils-x86-64-linux-gnu=2.35.2-2 bsdextrautils=2.36.1-7 bsdutils=1:2.36.1-7 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20210119 coreutils=8.32-4+b1 cpp=4:10.2.1-1 cpp-10=10.2.1-6 dash=0.5.11+git20210120+802ebd4-1 dctrl-tools=2.24-3+b1 debconf=1.5.76 debhelper=13.3.4 debianutils=4.11.2 dh-autoreconf=20 dh-r=20210303 dh-strip-nondeterminism=1.11.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.1-1 g++-10=10.2.1-6 gcc=4:10.2.1-1 gcc-10=10.2.1-6 gcc-10-base=10.2.1-6 gettext=0.21-4 gettext-base=0.21-4 gfortran=4:10.2.1-1 gfortran-10=10.2.1-6 grep=3.6-1 groff-base=1.22.4-6 gzip=1.10-4 hdf5-helpers=1.10.6+repack-2 hostname=3.23 icu-devtools=67.1-6 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-10 libaec-dev=1.0.4-1 libaec0=1.0.4-1 libalgorithm-c3-perl=0.11-1 libarchive-zip-perl=1.68-1 libasan6=10.2.1-6 libatomic1=10.2.1-6 libattr1=1:2.4.48-6 libaudit-common=1:3.0-2 libaudit1=1:3.0-2 libb-hooks-endofscope-perl=0.24-1.1 libb-hooks-op-check-perl=0.22-1+b3 libbinutils=2.35.2-2 libblas-dev=3.9.0-3 libblas3=3.9.0-3 libblkid1=2.36.1-7 libbrotli1=1.0.9-2+b2 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libbz2-dev=1.0.8-4 libc-bin=2.31-11 libc-dev-bin=2.31-11 libc6=2.31-11 libc6-dev=2.31-11 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.1-6 libclass-c3-perl=0.35-1 libclass-load-perl=0.25-1 libclass-load-xs-perl=0.10-1+b5 libcom-err2=1.46.2-1 libcrypt-dev=1:4.4.18-3 libcrypt1=1:4.4.18-3 libctf-nobfd0=2.35.2-2 libctf0=2.35.2-2 libcurl3-gnutls=7.74.0-1.2 libcurl4=7.74.0-1.2 libdata-optlist-perl=0.110-1.1 libdatrie1=0.2.13-1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.257 libdebhelper-perl=13.3.4 libdeflate0=1.7-1 libdevel-callchecker-perl=0.008-1+b2 libdevel-globaldestruction-perl=0.14-1.1 libdevel-overloadinfo-perl=0.005-1 libdevel-stacktrace-perl=2.0400-1 libdist-checkconflicts-perl=0.11-1.1 libdpkg-perl=1.20.9 libdynaloader-functions-perl=0.003-1.1 libelf1=0.183-3 libencode-locale-perl=1.05-1.1 libeval-closure-perl=0.14-1 libexpat1=2.2.10-2 libffi7=3.3-6 libfile-stripnondeterminism-perl=1.11.0-1 libfile-which-perl=1.23-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.4+dfsg-1 libfribidi0=1.0.8-2 libgcc-10-dev=10.2.1-6 libgcc-s1=10.2.1-6 libgcrypt20=1.8.7-3 libgdbm-compat4=1.19-2 libgdbm6=1.19-2 libgfortran-10-dev=10.2.1-6 libgfortran5=10.2.1-6 libglib2.0-0=2.66.8-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.7.1-3 libgomp1=10.2.1-6 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-5 libharfbuzz0b=2.7.4-1 libhdf5-103-1=1.10.6+repack-2 libhdf5-cpp-103-1=1.10.6+repack-2 libhdf5-dev=1.10.6+repack-2 libhdf5-fortran-102=1.10.6+repack-2 libhdf5-hl-100=1.10.6+repack-2 libhdf5-hl-cpp-100=1.10.6+repack-2 libhdf5-hl-fortran-100=1.10.6+repack-2 libhogweed6=3.7.2-3 libhttp-date-perl=6.05-1 libhttp-message-perl=6.29-1 libice6=2:1.0.10-1 libicu-dev=67.1-6 libicu67=67.1-6 libidn2-0=2.3.0-5 libio-html-perl=1.004-2 libisl23=0.23-1 libitm1=10.2.1-6 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.0.6-4 libjpeg62-turbo=1:2.0.6-4 libjpeg62-turbo-dev=1:2.0.6-4 libk5crypto3=1.18.3-5 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-5 libkrb5support0=1.18.3-5 liblapack-dev=3.9.0-3 liblapack3=3.9.0-3 libldap-2.4-2=2.4.57+dfsg-2 liblsan0=10.2.1-6 liblwp-mediatypes-perl=6.04-1 liblz4-1=1.9.3-1 liblzma-dev=5.2.5-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmd0=1.0.3-3 libmodule-implementation-perl=0.09-1.1 libmodule-runtime-conflicts-perl=0.003-1.1 libmodule-runtime-perl=0.016-1 libmoose-perl=2.2014-2 libmount1=2.36.1-7 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libmro-compat-perl=0.13-1 libnamespace-clean-perl=0.27-1 libncurses-dev=6.2+20201114-2 libncurses5-dev=6.2+20201114-2 libncurses6=6.2+20201114-2 libncursesw6=6.2+20201114-2 libnettle8=3.7.2-3 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.23.22-1 libpackage-deprecationmanager-perl=0.17-1.1 libpackage-stash-perl=0.39-1 libpackage-stash-xs-perl=0.29-1+b2 libpam-modules=1.4.0-7 libpam-modules-bin=1.4.0-7 libpam-runtime=1.4.0-7 libpam0g=1.4.0-7 libpango-1.0-0=1.46.2-3 libpangocairo-1.0-0=1.46.2-3 libpangoft2-1.0-0=1.46.2-3 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libparams-classify-perl=0.015-1+b3 libparams-util-perl=1.102-1+b1 libpcre16-3=2:8.39-13 libpcre2-16-0=10.36-2 libpcre2-32-0=10.36-2 libpcre2-8-0=10.36-2 libpcre2-dev=10.36-2 libpcre2-posix2=10.36-2 libpcre3=2:8.39-13 libpcre3-dev=2:8.39-13 libpcre32-3=2:8.39-13 libpcrecpp0v5=2:8.39-13 libperl5.32=5.32.1-3 libpipeline1=1.5.3-1 libpixman-1-0=0.40.0-1 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libpsl5=0.21.0-1.2 libquadmath0=10.2.1-6 libreadline-dev=8.1-1 libreadline8=8.1-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.1-1 libselinux1=3.1-3 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.36.1-7 libssh2-1=1.9.0-3 libssl1.1=1.1.1k-1 libstdc++-10-dev=10.2.1-6 libstdc++6=10.2.1-6 libsub-exporter-perl=0.987-1 libsub-exporter-progressive-perl=0.001013-1 libsub-identify-perl=0.14-1+b3 libsub-install-perl=0.928-1.1 libsub-name-perl=0.26-1+b1 libsub-override-perl=0.09-2 libswitch-perl=2.17-2.1 libsystemd0=247.3-5 libsz2=1.0.4-1 libtasn1-6=4.16.0-2 libtcl8.6=8.6.11+dfsg-1 libthai-data=0.1.28-4 libthai0=0.1.28-4 libtiff5=4.2.0-1 libtimedate-perl=2.3300-2 libtinfo6=6.2+20201114-2 libtirpc-common=1.3.1-1 libtirpc-dev=1.3.1-1 libtirpc3=1.3.1-1 libtk8.6=8.6.11-2 libtool=2.4.6-15 libtry-tiny-perl=0.30-1 libtsan0=10.2.1-6 libubsan1=10.2.1-6 libuchardet0=0.0.7-1 libudev1=247.3-5 libunistring2=0.9.10-4 liburi-perl=5.08-1 libuuid1=2.36.1-7 libvariable-magic-perl=0.62-1+b3 libwebp6=0.6.1-2+b1 libwww-curl-perl=4.17-7+b1 libwww-curl-simple-perl=0.100191-2 libx11-6=2:1.7.0-2 libx11-data=2:1.7.0-2 libxau6=1:1.0.9-1 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1.1 libxft2=2.3.2-2 libxml2=2.9.10+dfsg-6.3+b1 libxmuu1=2:1.1.2-2+b3 libxrender1=1:0.9.10-1 libxss1=1:1.2.3-1 libxt6=1:1.2.0-1 libzstd1=1.4.8+dfsg-2.1 linux-libc-dev=5.10.28-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20201114-2 ncurses-bin=6.2+20201114-2 openssl=1.1.1k-1 patch=2.7.6-7 perl=5.32.1-3 perl-base=5.32.1-3 perl-modules-5.32=5.32.1-3 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 r-base-core=4.0.4-1 r-base-dev=4.0.4-1 readline-common=8.1-1 sed=4.7-1 sensible-utils=0.0.14 sysvinit-utils=2.96-7 tar=1.34+dfsg-1 tzdata=2021a-1 ucf=3.0043 unzip=6.0-26 util-linux=2.36.1-7 x11-common=1:7.7+22 xauth=1:1.1-1 xdg-utils=1.1.3-4 xz-utils=5.2.5-2 zip=3.0-12 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210419T023617Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d r-bioc-rhdf5lib=1.12.1+dfsg-3 && mkdir -p /build/r-bioc-rhdf5lib-1tEBIb && dpkg-source --no-check -x /*.dsc /build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg && cd /build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg && { printf '%s' 'r-bioc-rhdf5lib (1.12.1+dfsg-3+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild on buildd -- amd64 Build Daemon (x86-grnet-01) Mon, 19 Apr 2021 21:01:39 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/r-bioc-rhdf5lib-1tEBIb" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1618866099" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/r-bioc-rhdf5lib-1tEBIb /tmp/r-bioc-rhdf5lib-1.12.1+dfsg-3+b1_elgo5cm bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20210419T023617Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.jGS5EC7jPK as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.jGS5EC7jPK Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-7). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20210419T023617Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20210419T023617Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (797 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4668 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-11) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20210419T023617Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.jGS5EC7jPK Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20210419T023617Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 19s (1162 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.jGS5EC7jPK I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d r-bioc-rhdf5lib=1.12.1+dfsg-3 && mkdir -p /build/r-bioc-rhdf5lib-1tEBIb && dpkg-source --no-check -x /*.dsc /build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg && cd /build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg && { printf '%s' 'r-bioc-rhdf5lib (1.12.1+dfsg-3+b1) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild on buildd -- amd64 Build Daemon (x86-grnet-01) Mon, 19 Apr 2021 21:01:39 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/r-bioc-rhdf5lib-1tEBIb"' exec /tmp/mmdebstrap.jGS5EC7jPK Reading package lists... NOTICE: 'r-bioc-rhdf5lib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5lib.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5lib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 48.2 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main r-bioc-rhdf5lib 1.12.1+dfsg-3 (dsc) [2216 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main r-bioc-rhdf5lib 1.12.1+dfsg-3 (tar) [39.5 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main r-bioc-rhdf5lib 1.12.1+dfsg-3 (diff) [6488 B] Fetched 48.2 kB in 0s (279 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'r-bioc-rhdf5lib_1.12.1+dfsg-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting r-bioc-rhdf5lib in /build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg dpkg-source: info: unpacking r-bioc-rhdf5lib_1.12.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-rhdf5lib_1.12.1+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libhdf5-dev.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1618866099" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.jGS5EC7jPK dpkg-buildpackage: info: source package r-bioc-rhdf5lib dpkg-buildpackage: info: source version 1.12.1+dfsg-3+b1 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 Build Daemon (x86-grnet-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R debian/rules override_dh_auto_clean make[1]: Entering directory '/build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg' dh_auto_clean rm -f src/config.log rm -f src/config.status rm -f confdefs.h make[1]: Leaving directory '/build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg' dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: knitr, rmarkdown, biocstyle, pandoc-citeproc I: R Package: Rhdf5lib Version: 1.12.1 I: Building using R version 4.0.4-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Mon, 19 Apr 2021 21:01:39 +0000 mkdir -p /build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1\+dfsg/debian/r-bioc-rhdf5lib/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1\+dfsg/debian/r-bioc-rhdf5lib/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 19 Apr 2021 21:01:39 +0000'" * installing *source* package ‘Rhdf5lib’ ... ** using staged installation checking for gcc... gcc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking whether C++ compiler accepts -w... yes checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for zlib.h... yes checking curl/curl.h usability... no checking curl/curl.h presence... no checking for curl/curl.h... no checking openssl/evp.h usability... no checking openssl/evp.h presence... no checking for openssl/evp.h... no checking openssl/hmac.h usability... no checking openssl/hmac.h presence... no checking for openssl/hmac.h... no checking openssl/sha.h usability... no checking openssl/sha.h presence... no checking for openssl/sha.h... no S3_VFD=--enable-ros3-vfd=no untarring hdf5small_cxx_hl_1.10.6.tar.gz ... gzip: hdf5small_cxx_hl_1.10.6.tar.gz: No such file or directory tar: This does not look like a tar archive tar: Exiting with failure status due to previous errors configure: HDF5_INCLUDE=/usr/include/hdf5/serial configure: HDF5_CXX_INCLUDE=/usr/include/hdf5/serial configure: HDF5_HL_INCLUDE=/usr/include/hdf5/serial configure: HDF5_HL_CXX_INCLUDE=/usr/include/hdf5/serial configure: HDF5_LIB=/usr/lib/x86_64-linux-gnu/hdf5/serial/ configure: HDF5_CXX_LIB=/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.a configure: HDF5_HL_LIB=/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl.a configure: HDF5_HL_CXX_LIB=/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_hl_cpp.a configure: SZIP_LIB=/usr/lib/x86_64-linux-gnu/libsz.a sed: can't read confdefs.h: No such file or directory configure: creating ./config.status ** libs make[1]: Entering directory '/build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -fpic -g -O2 -ffile-prefix-map=/build/r-base-XqSJAD/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rhdf5lib.c -o Rhdf5lib.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Rhdf5lib.so Rhdf5lib.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial/ -lhdf5 -lsz -lz -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg/src' make[1]: Entering directory '/build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg/src' make[1]: Leaving directory '/build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg/src' installing to /build/r-bioc-rhdf5lib-1tEBIb/r-bioc-rhdf5lib-1.12.1+dfsg/debian/r-bioc-rhdf5lib/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5lib-1.12.1+dfsg/00new/Rhdf5lib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rhdf5lib) W: Ignoring specified R dependency: R (>= 3.3.0) I: Using r-cran-knitr for Recommends:knitr I: Using r-cran-rmarkdown for Recommends:rmarkdown I: Using r-bioc-biocstyle for Recommends:biocstyle W: Please install devscripts to enable an attempt to create debian package for Recommends:pandoc-citeproc. I: Using r-cran-tinytest for Suggests:tinytest I: BioConductor API version: r-api-bioc-3.12 I: Use r-bioc-rhdf5lib as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -a -O--buildsystem=R dh_strip -a -a -O--buildsystem=R dh_makeshlibs -a -a -O--buildsystem=R dh_shlibdeps -a -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R dpkg-deb: building package 'r-bioc-rhdf5lib-dbgsym' in '../r-bioc-rhdf5lib-dbgsym_1.12.1+dfsg-3+b1_amd64.deb'. dpkg-deb: building package 'r-bioc-rhdf5lib' in '../r-bioc-rhdf5lib_1.12.1+dfsg-3+b1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../r-bioc-rhdf5lib_1.12.1+dfsg-3+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/r-bioc-rhdf5lib-1tEBIb /tmp/r-bioc-rhdf5lib-1.12.1+dfsg-3+b1_elgo5cm I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.jGS5EC7jPK... I: success in 395.0137 seconds md5: r-bioc-rhdf5lib-dbgsym_1.12.1+dfsg-3+b1_amd64.deb: OK md5: r-bioc-rhdf5lib_1.12.1+dfsg-3+b1_amd64.deb: OK sha1: r-bioc-rhdf5lib-dbgsym_1.12.1+dfsg-3+b1_amd64.deb: OK sha1: r-bioc-rhdf5lib_1.12.1+dfsg-3+b1_amd64.deb: OK sha256: r-bioc-rhdf5lib-dbgsym_1.12.1+dfsg-3+b1_amd64.deb: OK sha256: r-bioc-rhdf5lib_1.12.1+dfsg-3+b1_amd64.deb: OK Checksums: OK