Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/r/r-bioc-rhdf5filters/r-bioc-rhdf5filters_1.2.0+dfsg2-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/r-bioc-rhdf5filters-1.2.0+dfsg2-1l4mpsne0/r-bioc-rhdf5filters_1.2.0+dfsg2-1_amd64.buildinfo Get source package info: r-bioc-rhdf5filters=1.2.0+dfsg2-1 Source URL: http://snapshot.notset.fr/mr/package/r-bioc-rhdf5filters/1.2.0+dfsg2-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-4 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc2-1 binutils=2.35.1-2 binutils-common=2.35.1-2 binutils-x86-64-linux-gnu=2.35.1-2 bsdextrautils=2.36.1-1 bsdutils=1:2.36-3+b2 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-17 dash=0.5.11+git20200708+dd9ef66-2 dctrl-tools=2.24-3+b1 debconf=1.5.74 debhelper=13.2.1 debianutils=4.11.2 dh-autoreconf=19 dh-r=20200923 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13-5 file=1:5.38-5 findutils=4.7.0+git20201010-2 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:10.2.0-1 g++-10=10.2.0-17 gcc=4:10.2.0-1 gcc-10=10.2.0-17 gcc-10-base=10.2.0-17 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 gfortran=4:10.2.0-1 gfortran-10=10.2.0-17 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hdf5-helpers=1.10.6+repack-2 hostname=3.23 icu-devtools=67.1-4 init-system-helpers=1.58 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libaec-dev=1.0.4-1 libaec0=1.0.4-1 libarchive-zip-perl=1.68-1 libasan6=10.2.0-17 libatomic1=10.2.0-17 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-2 libblas-dev=3.9.0-3 libblas3=3.9.0-3 libblkid1=2.36-3+b2 libblosc-dev=1.17.1+ds1-1 libblosc1=1.17.1+ds1-1 libbrotli1=1.0.9-2+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libbz2-dev=1.0.8-4 libc-bin=2.31-4 libc-dev-bin=2.31-4 libc6=2.31-4 libc6-dev=2.31-4 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2.2 libcc1-0=10.2.0-17 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-2 libctf0=2.35.1-2 libcurl4=7.72.0-1 libdatrie1=0.2.12-3 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.2.1 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libfile-which-perl=1.23-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.2+dfsg-4 libfribidi0=1.0.8-2 libgcc-10-dev=10.2.0-17 libgcc-s1=10.2.0-17 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran-10-dev=10.2.0-17 libgfortran5=10.2.0-17 libglib2.0-0=2.66.2-1 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.6.15-4 libgomp1=10.2.0-17 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.17-10 libharfbuzz0b=2.6.7-1 libhdf5-103-1=1.10.6+repack-2 libhdf5-cpp-103-1=1.10.6+repack-2 libhdf5-dev=1.10.6+repack-2 libhdf5-fortran-102=1.10.6+repack-2 libhdf5-hl-100=1.10.6+repack-2 libhdf5-hl-cpp-100=1.10.6+repack-2 libhdf5-hl-fortran-100=1.10.6+repack-2 libhogweed6=3.6-2 libice6=2:1.0.10-1 libicu-dev=67.1-4 libicu67=67.1-4 libidn2-0=2.3.0-3 libisl22=0.22.1-1 libitm1=10.2.0-17 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.0.5-1.1 libjpeg62-turbo=1:2.0.5-1.1 libjpeg62-turbo-dev=1:2.0.5-1.1 libk5crypto3=1.17-10 libkeyutils1=1.6.1-2 libkrb5-3=1.17-10 libkrb5support0=1.17-10 liblapack-dev=3.9.0-3 liblapack3=3.9.0-3 libldap-2.4-2=2.4.56+dfsg-1 liblsan0=10.2.0-17 liblz4-1=1.9.2-2 liblzma-dev=5.2.4-1+b1 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmount1=2.36-3+b2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncurses-dev=6.2+20200918-1 libncurses5-dev=6.2+20200918-1 libncurses6=6.2+20200918-1 libncursesw6=6.2+20200918-1 libnettle8=3.6-2 libnghttp2-14=1.41.0-3 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnss-nis=3.1-4 libnss-nisplus=1.3-4 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpango-1.0-0=1.46.2-3 libpangocairo-1.0-0=1.46.2-3 libpangoft2-1.0-0=1.46.2-3 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpcre16-3=2:8.39-13 libpcre2-16-0=10.34-7 libpcre2-32-0=10.34-7 libpcre2-8-0=10.34-7 libpcre2-dev=10.34-7 libpcre2-posix2=10.34-7 libpcre3=2:8.39-13 libpcre3-dev=2:8.39-13 libpcre32-3=2:8.39-13 libpcrecpp0v5=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libpixman-1-0=0.36.0-1 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libpsl5=0.21.0-1.1 libquadmath0=10.2.0-17 libreadline-dev=8.1~rc2-2 libreadline8=8.1~rc2-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsigsegv2=2.12-2 libsm6=2:1.2.3-1 libsmartcols1=2.36-3+b2 libsnappy1v5=1.1.8-1 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-17 libstdc++6=10.2.0-17 libsub-override-perl=0.09-2 libswitch-perl=2.17-2 libsystemd0=246.6-2 libsz2=1.0.4-1 libtasn1-6=4.16.0-2 libtcl8.6=8.6.10+dfsg-1 libthai-data=0.1.28-3 libthai0=0.1.28-3 libtiff5=4.1.0+git191117-2 libtinfo6=6.2+20200918-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtk8.6=8.6.10-1 libtool=2.4.6-14 libtsan0=10.2.0-17 libubsan1=10.2.0-17 libuchardet0=0.0.7-1 libudev1=246.6-2 libunistring2=0.9.10-4 libuuid1=2.36-3+b2 libwebp6=0.6.1-2+b1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libxau6=1:1.0.8-1+b2 libxcb-render0=1.14-2 libxcb-shm0=1.14-2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxft2=2.3.2-2 libxml2=2.9.10+dfsg-6.2 libxmuu1=2:1.1.2-2+b3 libxrender1=1:0.9.10-1 libxss1=1:1.2.3-1 libxt6=1:1.2.0-1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.6-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 ncurses-base=6.2+20200918-1 ncurses-bin=6.2+20200918-1 openssl=1.1.1h-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 pkg-config=0.29.2-1 po-debconf=1.0.21 r-base-core=4.0.3-1 r-base-dev=4.0.3-1 r-bioc-biocgenerics=0.36.0-1 r-bioc-rhdf5lib=1.12.0+dfsg-1 readline-common=8.1~rc2-2 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-5 tar=1.30+dfsg-7 tzdata=2020d-1 ucf=3.0043 unzip=6.0-25 util-linux=2.36-3+b2 x11-common=1:7.7+21 xauth=1:1.0.10-1 xdg-utils=1.1.3-2 xz-utils=5.2.4-1+b1 zip=3.0-11+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201125T210657Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201116T092020Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d r-bioc-rhdf5filters=1.2.0+dfsg2-1 && mkdir -p /build/r-bioc-rhdf5filters-UmjOnw && dpkg-source --no-check -x /*.dsc /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2 && chown -R builduser:builduser /build/r-bioc-rhdf5filters-UmjOnw" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605611824" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/r-bioc-rhdf5filters-UmjOnw /tmp/r-bioc-rhdf5filters-1.2.0+dfsg2-1l4mpsne0 bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201116T092020Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.FppPZafuY0 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.FppPZafuY0 Reading package lists... Building dependency tree... util-linux is already the newest version (2.36-3+b2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201116T092020Z unstable/main amd64 libfakeroot amd64 1.25.3-1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201116T092020Z unstable/main amd64 fakeroot amd64 1.25.3-1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1114 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4695 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1_amd64.deb ... Unpacking fakeroot (1.25.3-1) ... Setting up libfakeroot:amd64 (1.25.3-1) ... Setting up fakeroot (1.25.3-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201125T210657Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20201116T092020Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.FppPZafuY0 Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201125T210657Z unstable InRelease [146 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20201116T092020Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20201125T210657Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201125T210657Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20201125T210657Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20201125T210657Z unstable/main amd64 Packages [11.6 MB] Fetched 34.3 MB in 29s (1197 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.FppPZafuY0 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d r-bioc-rhdf5filters=1.2.0+dfsg2-1 && mkdir -p /build/r-bioc-rhdf5filters-UmjOnw && dpkg-source --no-check -x /*.dsc /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2 && chown -R builduser:builduser /build/r-bioc-rhdf5filters-UmjOnw"' exec /tmp/mmdebstrap.FppPZafuY0 Reading package lists... NOTICE: 'r-bioc-rhdf5filters' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5filters.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5filters.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 78.1 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main r-bioc-rhdf5filters 1.2.0+dfsg2-1 (dsc) [2183 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main r-bioc-rhdf5filters 1.2.0+dfsg2-1 (tar) [71.1 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main r-bioc-rhdf5filters 1.2.0+dfsg2-1 (diff) [4828 B] Fetched 78.1 kB in 3s (24.2 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'r-bioc-rhdf5filters_1.2.0+dfsg2-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting r-bioc-rhdf5filters in /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2 dpkg-source: info: unpacking r-bioc-rhdf5filters_1.2.0+dfsg2.orig.tar.xz dpkg-source: info: unpacking r-bioc-rhdf5filters_1.2.0+dfsg2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying hardening I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1605611824" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.FppPZafuY0 dpkg-buildpackage: info: source package r-bioc-rhdf5filters dpkg-buildpackage: info: source version 1.2.0+dfsg2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R install -d /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0\+dfsg2/debian/.debhelper/generated/_source/home dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/r-bioc-rhdf5filters.substvars debian/files rm -fr -- debian/r-bioc-rhdf5filters/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after dh_auto_configure -a -O--buildsystem=R install -d /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0\+dfsg2/debian/.debhelper/generated/_source/home dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R rm -fr -- /tmp/dh-xdg-rundir-nosLgHzt create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R rm -f -- debian/r-bioc-rhdf5filters.substvars rm -fr -- debian/.debhelper/generated/r-bioc-rhdf5filters/ debian/r-bioc-rhdf5filters/ debian/tmp/ dh_auto_install -a -O--buildsystem=R install -d /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0\+dfsg2/debian/r-bioc-rhdf5filters I: R Package: rhdf5filters Version: 1.2.0 I: Building using R version 4.0.3-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 17 Nov 2020 12:17:04 +0100 mkdir -p /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0\+dfsg2/debian/r-bioc-rhdf5filters/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0\+dfsg2/debian/r-bioc-rhdf5filters/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 17 Nov 2020 12:17:04 +0100'" * installing *source* package ‘rhdf5filters’ ... ** using staged installation configuring the BLOSC filter... checking for gcc... gcc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking whether C compiler accepts -msse2... yes checking for gcc __builtin_cpu_init function... yes checking for x86 sse2 instruction support... yes checking whether C compiler accepts -mavx2... yes checking for x86 avx2 instruction support... no configure: creating ./config.status config.status: creating src/blosc/Makefile configure: HDF5_INCLUDE=/src configure: BZIP2_LIB=bzip2/libH5Zbz2.so configure: BLOSC_LIB=blosc/libH5Zblosc.so configure: creating ./config.status config.status: creating src/blosc/Makefile config.status: creating src/Makevars ** libs make[1]: Entering directory '/build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2/src' make -C blosc make[2]: Entering directory '/build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2/src/blosc' gcc -std=gnu99 -g -O2 -fdebug-prefix-map=/build/r-base-oKyfjH/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -c -o H5Zblosc.o H5Zblosc.c \ -I/usr/include/hdf5/serial g++ -std=gnu++11 -g -O2 -fdebug-prefix-map=/build/r-base-oKyfjH/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -Wl,-z,relro -shared -o libH5Zblosc.so H5Zblosc.o \ -lblosc -lz make[2]: Leaving directory '/build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2/src/blosc' make -C bzip2 make[2]: Entering directory '/build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2/src/bzip2' gcc -std=gnu99 -g -O2 -fdebug-prefix-map=/build/r-base-oKyfjH/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -shared H5Zbzip2.c -I/usr/include/hdf5/serial \ -lbz2 -o libH5Zbz2.so -Wl,-z,relro make[2]: Leaving directory '/build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2/src/bzip2' mkdir -p "/build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.2.0+dfsg2/00new/rhdf5filters/lib/" cp bzip2/libH5Zbz2.so /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.2.0+dfsg2/00new/rhdf5filters/lib/ cp blosc/libH5Zblosc.so /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.2.0+dfsg2/00new/rhdf5filters/lib/ gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I'/usr/lib/R/site-library/Rhdf5lib/include' -g -O2 -fdebug-prefix-map=/build/r-base-oKyfjH/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-oKyfjH/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rhdf5filters.c -o rhdf5filters.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o rhdf5filters.so rhdf5filters.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2/src' make[1]: Entering directory '/build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2/src' make[1]: Leaving directory '/build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2/src' installing to /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.2.0+dfsg2/00new/rhdf5filters/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhdf5filters) rm -f /build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0\+dfsg2/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/LICENSE Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303. I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-testthat for Suggests:testthat (>= 2.1.0) I: Using r-bioc-rhdf5lib for LinkingTo:Rhdf5lib I: BioConductor API version: r-api-bioc-3.12 I: Use r-bioc-rhdf5filters as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R install -d debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters install -d debian/.debhelper/generated/r-bioc-rhdf5filters install -p -m0644 debian/copyright debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters/copyright dh_installchangelogs -a -O--buildsystem=R install -p -m0644 debian/changelog debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters/changelog.Debian dh_installsystemduser -a -O--buildsystem=R dh_lintian -a -O--buildsystem=R install -d debian/r-bioc-rhdf5filters/usr/share/lintian/overrides install -p -m0644 debian/r-bioc-rhdf5filters.lintian-overrides debian/r-bioc-rhdf5filters/usr/share/lintian/overrides/r-bioc-rhdf5filters dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R cd debian/r-bioc-rhdf5filters chmod a-x usr/share/doc/r-bioc-rhdf5filters/changelog.Debian gzip -9nf usr/share/doc/r-bioc-rhdf5filters/changelog.Debian cd '/build/r-bioc-rhdf5filters-UmjOnw/r-bioc-rhdf5filters-1.2.0+dfsg2' dh_fixperms -a -O--buildsystem=R find debian/r-bioc-rhdf5filters ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/r-bioc-rhdf5filters/usr/share/doc -type f -a -true -a ! -regex 'debian/r-bioc-rhdf5filters/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/r-bioc-rhdf5filters/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/r-bioc-rhdf5filters/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/r-bioc-rhdf5filters -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/r-bioc-rhdf5filters/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--buildsystem=R dh_dwz -a -a -O--buildsystem=R install -d debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/x86_64-linux-gnu/r-bioc-rhdf5filters.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/r-bioc-rhdf5filters.debug -- debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so objcopy --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/x86_64-linux-gnu/r-bioc-rhdf5filters.debug dh_strip -a -a -O--buildsystem=R install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/41 objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/41/849e8ce853f9e4b338354fdf4e0b59b72b7603.debug chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/41/849e8ce853f9e4b338354fdf4e0b59b72b7603.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/41/849e8ce853f9e4b338354fdf4e0b59b72b7603.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/01 objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/01/c094e5b13616904f08a81f7413a1d964b50b21.debug chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/01/c094e5b13616904f08a81f7413a1d964b50b21.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/01/c094e5b13616904f08a81f7413a1d964b50b21.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/94 objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/94/be3e1b293c14ec9fcf4a4351256579f33cce3b.debug chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/94/be3e1b293c14ec9fcf4a4351256579f33cce3b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/94/be3e1b293c14ec9fcf4a4351256579f33cce3b.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/r-bioc-rhdf5filters/usr/lib/debug install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/share/doc ln -s r-bioc-rhdf5filters debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/share/doc/r-bioc-rhdf5filters-dbgsym dh_makeshlibs -a -a -O--buildsystem=R rm -f debian/r-bioc-rhdf5filters/DEBIAN/shlibs dh_shlibdeps -a -a -O--buildsystem=R install -d debian/r-bioc-rhdf5filters/DEBIAN dpkg-shlibdeps -Tdebian/r-bioc-rhdf5filters.substvars debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R echo misc:Depends= >> debian/r-bioc-rhdf5filters.substvars echo misc:Pre-Depends= >> debian/r-bioc-rhdf5filters.substvars install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN dpkg-gencontrol -pr-bioc-rhdf5filters -ldebian/changelog -Tdebian/r-bioc-rhdf5filters.substvars -Pdebian/.debhelper/r-bioc-rhdf5filters/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=r-bioc-rhdf5filters-dbgsym "-DDepends=r-bioc-rhdf5filters (= \${binary:Version})" "-DDescription=debug symbols for r-bioc-rhdf5filters" "-DBuild-Ids=01c094e5b13616904f08a81f7413a1d964b50b21 41849e8ce853f9e4b338354fdf4e0b59b72b7603 94be3e1b293c14ec9fcf4a4351256579f33cce3b" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN/control dpkg-gencontrol -pr-bioc-rhdf5filters -ldebian/changelog -Tdebian/r-bioc-rhdf5filters.substvars -Pdebian/r-bioc-rhdf5filters chmod 0644 -- debian/r-bioc-rhdf5filters/DEBIAN/control dh_md5sums -a -O--buildsystem=R cd debian/r-bioc-rhdf5filters >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/r-bioc-rhdf5filters/DEBIAN/md5sums cd debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=R dpkg-deb --root-owner-group --build debian/r-bioc-rhdf5filters .. dpkg-deb --root-owner-group --build debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root .. dpkg-deb: building package 'r-bioc-rhdf5filters-dbgsym' in '../r-bioc-rhdf5filters-dbgsym_1.2.0+dfsg2-1_amd64.deb'. dpkg-deb: building package 'r-bioc-rhdf5filters' in '../r-bioc-rhdf5filters_1.2.0+dfsg2-1_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../r-bioc-rhdf5filters_1.2.0+dfsg2-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/r-bioc-rhdf5filters-UmjOnw /tmp/r-bioc-rhdf5filters-1.2.0+dfsg2-1l4mpsne0 I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.FppPZafuY0... I: success in 645.3775 seconds md5: r-bioc-rhdf5filters-dbgsym_1.2.0+dfsg2-1_amd64.deb: OK md5: r-bioc-rhdf5filters_1.2.0+dfsg2-1_amd64.deb: OK sha1: r-bioc-rhdf5filters-dbgsym_1.2.0+dfsg2-1_amd64.deb: OK sha1: r-bioc-rhdf5filters_1.2.0+dfsg2-1_amd64.deb: OK sha256: r-bioc-rhdf5filters-dbgsym_1.2.0+dfsg2-1_amd64.deb: OK sha256: r-bioc-rhdf5filters_1.2.0+dfsg2-1_amd64.deb: OK Checksums: OK