Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/r/r-bioc-rcpi/r-bioc-rcpi_1.32.2+ds-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/r-bioc-rcpi-1.32.2+ds-1bssb_t0l/r-bioc-rcpi_1.32.2+ds-1_all.buildinfo Get source package info: r-bioc-rcpi=1.32.2+ds-1 Source URL: http://snapshot.notset.fr/mr/package/r-bioc-rcpi/1.32.2+ds-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.3 autopoint=0.21-6 autotools-dev=20220109.1 base-files=12.2 base-passwd=3.5.52 bash=5.1-6.1 binfmt-support=2.2.2-1 binutils=2.38.90.20220713-2 binutils-common=2.38.90.20220713-2 binutils-x86-64-linux-gnu=2.38.90.20220713-2 bsdextrautils=2.38-5 bsdutils=1:2.38-5 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 ca-certificates-java=20220719 coreutils=8.32-4.1 cpp=4:12.1.0-3 cpp-12=12.1.0-7 dash=0.5.11+git20210903+057cd650a4ed-8 dctrl-tools=2.24-3+b1 debconf=1.5.79 debhelper=13.8 debianutils=5.7-0.2 default-jre=2:1.11-72 default-jre-headless=2:1.11-72 dh-autoreconf=20 dh-r=20210816 dh-strip-nondeterminism=1.13.0-1 diffutils=1:3.7-5 dpkg=1.21.9 dpkg-dev=1.21.9 dwz=0.14-1 fastjar=2:0.98-7 file=1:5.41-4 findutils=4.9.0-3 fontconfig=2.13.1-4.4 fontconfig-config=2.13.1-4.4 fonts-dejavu-core=2.37-2 g++=4:12.1.0-3 g++-12=12.1.0-7 gcc=4:12.1.0-3 gcc-12=12.1.0-7 gcc-12-base=12.1.0-7 gettext=0.21-6 gettext-base=0.21-6 gfortran=4:12.1.0-3 gfortran-12=12.1.0-7 grep=3.7-1 groff-base=1.22.4-8 gzip=1.12-1 hostname=3.23 icu-devtools=71.1-3 init-system-helpers=1.64 intltool-debian=0.35.0+20060710.5 jarwrapper=0.78 java-common=0.72 java-wrappers=0.3 javacc=7.0.11-1 jtb=1.4.12-2 junit=3.8.2-9 junit4=4.13.2-1 libacl1=2.3.1-1 libalgorithm-c3-perl=0.11-1 libaopalliance-java=20070526-6 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libasan8=12.1.0-7 libasm-java=9.3-1 libasound2=1.2.7.1-1 libasound2-data=1.2.7.1-1 libatinject-jsr330-api-java=1.0+ds1-5 libatomic1=12.1.0-7 libattr1=1:2.5.1-1 libaudit-common=1:3.0.7-1 libaudit1=1:3.0.7-1+b1 libavahi-client3=0.8-6 libavahi-common-data=0.8-6 libavahi-common3=0.8-6 libb-hooks-endofscope-perl=0.26-1 libb-hooks-op-check-perl=0.22-2 libbatik-java=1.14-2 libbeam-java=1.3.3-3 libbinutils=2.38.90.20220713-2 libblas-dev=3.10.1-2 libblas3=3.10.1-2 libblkid1=2.38-5 libbrotli1=1.0.9-2+b4 libbsd0=0.11.6-1 libbz2-1.0=1.0.8-5 libbz2-dev=1.0.8-5 libc-bin=2.33-8 libc-dev-bin=2.33-8 libc6=2.33-8 libc6-dev=2.33-8 libcairo2=1.16.0-6 libcap-ng0=0.8.3-1+b1 libcap2=1:2.44-1 libcc1-0=12.1.0-7 libcdi-api-java=1.2-3 libcdk-java=1:2.7.1-1 libcdkr-java=3.6.0+dfsg-2 libclass-c3-perl=0.35-1 libclass-load-perl=0.25-1 libclass-load-xs-perl=0.10-2 libcmlxom-java=4.1-1 libcom-err2=1.46.5-2 libcommons-beanutils-java=1.9.4-1 libcommons-cli-java=1.4-2 libcommons-codec-java=1.15-1 libcommons-collections3-java=3.2.2-2 libcommons-compress-java=1.21-1 libcommons-configuration-java=1.10-5 libcommons-digester-java=1.8.1-5 libcommons-io-java=2.11.0-2 libcommons-lang-java=2.6-10 libcommons-lang3-java=3.12.0-2 libcommons-logging-java=1.2-3 libcommons-math-java=2.2-8 libcommons-parent-java=43-1 libcommons-validator-java=1:1.6-2 libcrypt-dev=1:4.4.28-2 libcrypt1=1:4.4.28-2 libctf-nobfd0=2.38.90.20220713-2 libctf0=2.38.90.20220713-2 libcups2=2.4.2-1 libcurl3-gnutls=7.84.0-2 libcurl4=7.84.0-2 libdata-optlist-perl=0.112-1 libdatrie1=0.2.13-2 libdb5.3=5.3.28+dfsg1-0.10 libdbus-1-3=1.14.0-2 libdebconfclient0=0.263 libdebhelper-perl=13.8 libdeflate0=1.12-1 libdevel-callchecker-perl=0.008-1+b3 libdevel-globaldestruction-perl=0.14-2 libdevel-overloadinfo-perl=0.007-1 libdevel-stacktrace-perl=2.0400-1 libdist-checkconflicts-perl=0.11-2 libdom4j-java=2.1.3-2 libdoxia-core-java=1.7-2 libdoxia-java=1.7-2 libdoxia-sitetools-java=1.7.5-2 libdpkg-perl=1.21.9 libdrm-amdgpu1=2.4.111-1 libdrm-common=2.4.111-1 libdrm-nouveau2=2.4.111-1 libdrm-radeon1=2.4.111-1 libdrm2=2.4.111-1 libdynaloader-functions-perl=0.003-2 libedit2=3.1-20210910-1 libelf1=0.187-1 libencode-locale-perl=1.05-2 libeuclid-java=2.1-1 libeval-closure-perl=0.14-2 libexpat1=2.4.8-1 libffi8=3.4.2-4 libfile-stripnondeterminism-perl=1.13.0-1 libfile-which-perl=1.27-1 libfontbox2-java=2.0.26-1 libfontconfig1=2.13.1-4.4 libfop-java=1:2.6-2 libfreehep-graphicsio-pdf-java=2.4+dfsg-3 libfreehep-graphicsio-ps-java=2.4+dfsg-3 libfreetype6=2.12.1+dfsg-3 libfribidi0=1.0.8-2.1 libgcc-12-dev=12.1.0-7 libgcc-s1=12.1.0-7 libgcrypt20=1.10.1-2 libgdbm-compat4=1.23-1 libgdbm6=1.23-1 libgeronimo-annotation-1.3-spec-java=1.3-1 libgeronimo-interceptor-3.0-spec-java=1.0.1-4 libgfortran-12-dev=12.1.0-7 libgfortran5=12.1.0-7 libgif7=5.2.1-2.5 libgl1=1.4.0-1 libgl1-mesa-dri=22.1.3-1 libglapi-mesa=22.1.3-1 libglib2.0-0=2.72.3-1 libglvnd0=1.4.0-1 libglx-mesa0=22.1.3-1 libglx0=1.4.0-1 libgmp10=2:6.2.1+dfsg1-1 libgnutls30=3.7.6-2 libgomp1=12.1.0-7 libgoogle-gson-java=2.9.0-1 libgpg-error0=1.45-2 libgprofng0=2.38.90.20220713-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.20-1 libguava-java=29.0-6 libguice-java=4.2.3-2 libhamcrest-java=1.3-9 libharfbuzz0b=2.7.4-1+b1 libhogweed6=3.7.3-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.37-1 libhttpclient-java=4.5.13-3 libhttpcore-java=4.4.15-1 libice6=2:1.0.10-1 libicu-dev=71.1-3 libicu71=71.1-3 libidn2-0=2.3.3-1 libio-html-perl=1.004-3 libisl23=0.25-1 libitext1-java=1.4-7 libitm1=12.1.0-7 libjama-java=1.0.3-2 libjavacc-maven-plugin-java=2.6-4 libjaxen-java=1.1.6-4 libjaxp1.3-java=1.3.05-6 libjbig0=2.1-3.1+b2 libjoda-time-java=2.10.14-1 libjoptsimple-java=5.0.4-4 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libjsr305-java=0.1~+svn49-11 libk5crypto3=1.20-1 libkeyutils1=1.6.3-1 libkrb5-3=1.20-1 libkrb5support0=1.20-1 liblapack-dev=3.10.1-2 liblapack3=3.10.1-2 liblcms2-2=2.13.1-1 libldap-2.5-0=2.5.12+dfsg-2 liblerc3=3.0+ds-1 liblightcouch-java=0.0.6-1.1 libllvm14=1:14.0.6-2 liblog4j1.2-java=1.2.17-11 liblog4j2-java=2.17.2-1 liblsan0=12.1.0-7 liblwp-mediatypes-perl=6.04-1 liblz4-1=1.9.3-2 liblzma-dev=5.2.5-2.1 liblzma5=5.2.5-2.1 libmagic-mgc=1:5.41-4 libmagic1=1:5.41-4 libmaven-archiver-java=3.2.0-2.1 libmaven-compiler-plugin-java=3.8.1-4 libmaven-file-management-java=3.0.0-1 libmaven-jar-plugin-java=3.1.2-1 libmaven-parent-java=31-2 libmaven-reporting-api-java=3.0-1.1 libmaven-reporting-impl-java=3.0.0-2 libmaven-resolver-java=1.6.3-1 libmaven-shared-incremental-java=1.1-3 libmaven-shared-io-java=3.0.0-3 libmaven-shared-utils-java=3.3.4-1 libmaven3-core-java=3.6.3-5 libmd0=1.0.4-2 libmodule-implementation-perl=0.09-2 libmodule-runtime-conflicts-perl=0.003-2 libmodule-runtime-perl=0.016-2 libmongodb-java=3.6.3-2 libmoose-perl=2.2200-1+b1 libmount1=2.38-5 libmpc3=1.2.1-2 libmpfr6=4.1.0-3 libmro-compat-perl=0.15-1 libnamespace-clean-perl=0.27-2 libncurses-dev=6.3+20220423-2 libncurses5-dev=6.3+20220423-2 libncurses6=6.3+20220423-2 libncursesw6=6.3+20220423-2 libnettle8=3.7.3-1 libnghttp2-14=1.48.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libnspr4=2:4.34-1 libnss3=2:3.79-1 liboro-java=2.0.8a-14 libp11-kit0=0.24.1-1 libpackage-deprecationmanager-perl=0.17-2 libpackage-stash-perl=0.40-1 libpackage-stash-xs-perl=0.30-1 libpam-modules=1.4.0-13 libpam-modules-bin=1.4.0-13 libpam-runtime=1.4.0-13 libpam0g=1.4.0-13 libpango-1.0-0=1.50.7+ds-1 libpangocairo-1.0-0=1.50.7+ds-1 libpangoft2-1.0-0=1.50.7+ds-1 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libparams-classify-perl=0.015-2 libparams-util-perl=1.102-1+b2 libparboiled-java=1.1.7-2.1 libpcre16-3=2:8.39-14 libpcre2-16-0=10.40-1 libpcre2-32-0=10.40-1 libpcre2-8-0=10.40-1 libpcre2-dev=10.40-1 libpcre2-posix3=10.40-1 libpcre3=2:8.39-14 libpcre3-dev=2:8.39-14 libpcre32-3=2:8.39-14 libpcrecpp0v5=2:8.39-14 libpcsclite1=1.9.8-1 libpegdown-java=1.6.0-1.1 libperl5.34=5.34.0-5 libpipeline1=1.5.6-1 libpixman-1-0=0.40.0-1 libplexus-archiver-java=4.2.7-3 libplexus-cipher-java=2.0-1 libplexus-classworlds-java=2.6.0-1 libplexus-compiler-java=2.8.8-3 libplexus-component-annotations-java=2.1.1-1 libplexus-container-default-java=2.1.1-1 libplexus-i18n-java=1.0-beta-10-5 libplexus-interpolation-java=1.26-1 libplexus-io-java=3.3.1-2 libplexus-languages-java=0.9.10-2 libplexus-sec-dispatcher-java=2.0-3 libplexus-utils2-java=3.3.0-3 libplexus-velocity-java=1.2-3.1 libpng-dev=1.6.37-5 libpng16-16=1.6.37-5 libpsl5=0.21.0-1.2 libqdox-java=1.12.1-3 libqdox2-java=2.0.1-1 libquadmath0=12.1.0-7 libreadline-dev=8.1.2-1.2 libreadline8=8.1.2-1.2 libregexp-ipv6-perl=0.03-3 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.28+dfsg-6 libsasl2-modules-db=2.1.28+dfsg-6 libscalar-list-utils-perl=1:1.62-1 libseccomp2=2.5.4-1+b1 libselinux1=3.4-1+b1 libsensors-config=1:3.6.0-7 libsensors5=1:3.6.0-7 libsignatures-java=1.1.10.g614270e+ds-1 libsigsegv2=2.14-1 libsisu-inject-java=0.3.4-2 libsisu-plexus-java=0.3.4-3 libslf4j-java=1.7.32-1 libsm6=2:1.2.3-1 libsmartcols1=2.38-5 libsnappy-java=1.1.8.3-1 libsnappy-jni=1.1.8.3-1 libsnappy1v5=1.1.9-2 libsqlite3-0=3.39.2-1 libssh2-1=1.10.0-3+b1 libssl3=3.0.5-1 libstdc++-12-dev=12.1.0-7 libstdc++6=12.1.0-7 libsub-exporter-perl=0.988-1 libsub-exporter-progressive-perl=0.001013-2 libsub-identify-perl=0.14-2 libsub-install-perl=0.928-2 libsub-name-perl=0.26-1+b2 libsub-override-perl=0.09-3 libswitch-perl=2.17-3 libsystemd0=251.3-1 libtagsoup-java=1.2.1+-1.1 libtasn1-6=4.18.0-4 libtcl8.6=8.6.12+dfsg-1 libthai-data=0.1.29-1 libthai0=0.1.29-1 libtiff5=4.4.0-3 libtimedate-perl=2.3300-2 libtinfo6=6.3+20220423-2 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtk8.6=8.6.12-1 libtool=2.4.7-4 libtry-tiny-perl=0.31-1 libtsan2=12.1.0-7 libubsan1=12.1.0-7 libuchardet0=0.0.7-1 libudev1=251.3-1 libunistring2=1.0-1 liburi-perl=5.12-1 libuuid1=2.38-5 libvariable-magic-perl=0.62-2 libvecmath-java=1.5.2-7 libvelocity-tools-java=2.0-8 libvulkan1=1.3.216.0-1 libwagon-provider-api-java=3.3.4-1 libwebp7=1.2.2-2+b1 libwww-curl-perl=4.17-7+b2 libwww-curl-simple-perl=0.100191-2 libx11-6=2:1.7.5-1 libx11-data=2:1.7.5-1 libx11-xcb1=2:1.7.5-1 libxalan2-java=2.7.2-4 libxau6=1:1.0.9-1 libxbean-reflect-java=4.5-8 libxcb-dri2-0=1.14-3 libxcb-dri3-0=1.14-3 libxcb-glx0=1.14-3 libxcb-present0=1.14-3 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb-sync1=1.14-3 libxcb-xfixes0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxerces2-java=2.12.2-1 libxext6=2:1.3.4-1 libxfixes3=1:6.0.0-1 libxft2=2.3.4-1 libxi6=2:1.8-1 libxml-commons-external-java=1.4.01-5 libxml-commons-resolver1.1-java=1.2-11 libxml2=2.9.14+dfsg-1+b1 libxmlgraphics-commons-java=2.6-1 libxmuu1=2:1.1.3-3 libxom-java=1.3.7+ds-3 libxrender1=1:0.9.10-1.1 libxshmfence1=1.3-1 libxss1=1:1.2.3-1 libxt6=1:1.2.1-1 libxtst6=2:1.2.3-1.1 libxxf86vm1=1:1.1.4-1+b2 libxz-java=1.9-1 libz3-4=4.8.12-1+b1 libzstd1=1.5.2+dfsg-1 linux-libc-dev=5.18.14-1 login=1:4.11.1+dfsg1-2 lsb-base=11.2 m4=1.4.18-5 make=4.3-4.1 man-db=2.10.2-1 mawk=1.3.4.20200120-3.1 ncurses-base=6.3+20220423-2 ncurses-bin=6.3+20220423-2 openjdk-11-jre=11.0.16+8-1 openjdk-11-jre-headless=11.0.16+8-1 openssl=3.0.5-1 patch=2.7.6-7 perl=5.34.0-5 perl-base=5.34.0-5 perl-modules-5.34=5.34.0-5 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 r-base-core=4.2.1-1 r-base-dev=4.2.1-1 r-bioc-annotationdbi=1.58.0-1 r-bioc-biobase=2.56.0-1 r-bioc-biocgenerics=0.42.0-1 r-bioc-biostrings=2.64.0-1 r-bioc-genomeinfodb=1.32.2-1 r-bioc-genomeinfodbdata=1.2.8-1 r-bioc-go.db=3.15.0-1 r-bioc-gosemsim=2.22.0-1 r-bioc-iranges=2.30.0-1 r-bioc-keggrest=1.36.3+dfsg-1 r-bioc-s4vectors=0.34.0-1 r-bioc-xvector=0.36.0-1 r-bioc-zlibbioc=1.42.0+dfsg-1 r-cran-askpass=1.1-2 r-cran-bit=4.0.4+dfsg-1 r-cran-bit64=4.0.5-1 r-cran-bitops=1.0-7-1 r-cran-blob=1.2.3-1 r-cran-cachem=1.0.6-1 r-cran-cli=3.3.0-1 r-cran-codetools=0.2-18-1 r-cran-crayon=1.5.1-1 r-cran-curl=4.3.2+dfsg-1 r-cran-dbi=1.1.3-1 r-cran-doparallel=1.0.17-1 r-cran-fastmap=1.1.0-1 r-cran-fingerprint=3.5.7-2+b1 r-cran-foreach=1.5.2-1 r-cran-glue=1.6.2-1 r-cran-httr=1.4.3-1 r-cran-iterators=1.0.14-1 r-cran-itertools=0.1-3-3 r-cran-jsonlite=1.8.0+dfsg-1 r-cran-littler=0.3.15-1 r-cran-memoise=2.0.1-1 r-cran-mime=0.12-1 r-cran-openssl=2.0.2+dfsg-1 r-cran-pkgconfig=2.0.3-2 r-cran-pkgkitten=0.2.2-2 r-cran-plogr=0.2.0-3 r-cran-png=0.1-7-4 r-cran-r6=2.5.1-1 r-cran-rcdk=3.6.0+dfsg-1 r-cran-rcdklibs=2.3+dfsg-8 r-cran-rcpp=1.0.9-1 r-cran-rcurl=1.98-1.7+dfsg-1 r-cran-rjava=1.0-6-1 r-cran-rjson=0.2.21-1 r-cran-rlang=1.0.4-1 r-cran-rsqlite=2.2.15-1 r-cran-sys=3.4-1 r-cran-vctrs=0.4.1-2 readline-common=8.1.2-1.2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sgml-base=1.30 sysvinit-utils=3.03-1 tar=1.34+dfsg-1 tzdata=2022a-1 ucf=3.0043 unzip=6.0-26 util-linux=2.38-5 util-linux-extra=2.38-5 velocity=1.7-6 x11-common=1:7.7+23 xauth=1:1.1.1-1 xdg-utils=1.1.3-4.1 xz-utils=5.2.5-2.1 zip=3.0-12 zlib1g=1:1.2.11.dfsg-4 zlib1g-dev=1:1.2.11.dfsg-4 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220727T032506Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220727T032506Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220727T032506Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d r-bioc-rcpi=1.32.2+ds-1 && mkdir -p /build/r-bioc-rcpi-eoCxxv && dpkg-source --no-check -x /*.dsc /build/r-bioc-rcpi-eoCxxv/r-bioc-rcpi-1.32.2+ds && chown -R builduser:builduser /build/r-bioc-rcpi-eoCxxv" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-bioc-rcpi-eoCxxv/r-bioc-rcpi-1.32.2+ds && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1658727668" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/r-bioc-rcpi-eoCxxv /tmp/r-bioc-rcpi-1.32.2+ds-1bssb_t0l bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20220727T032506Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.YV0x9A5Djg as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.YV0x9A5Djg Reading package lists... Building dependency tree... util-linux is already the newest version (2.38-5). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 136 kB of archives. After this operation, 401 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20220727T032506Z unstable/main amd64 libfakeroot amd64 1.29-1 [48.5 kB] Get:2 http://snapshot.notset.fr/archive/debian/20220727T032506Z unstable/main amd64 fakeroot amd64 1.29-1 [87.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 136 kB in 0s (885 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4629 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.29-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.29-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.29-1_amd64.deb ... Unpacking fakeroot (1.29-1) ... Setting up libfakeroot:amd64 (1.29-1) ... Setting up fakeroot (1.29-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-8) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20220727T032506Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20220727T032506Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20220727T032506Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.YV0x9A5Djg Get:1 http://snapshot.notset.fr/archive/debian/20220727T032506Z bookworm InRelease [157 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20220727T032506Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20220727T032506Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220727T032506Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220727T032506Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220727T032506Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20220727T032506Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20220727T032506Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20220727T032506Z bookworm/main Sources [12.1 MB] Get:4 http://snapshot.notset.fr/archive/debian/20220727T032506Z bookworm/main amd64 Packages [11.5 MB] Fetched 23.8 MB in 19s (1227 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.YV0x9A5Djg I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d r-bioc-rcpi=1.32.2+ds-1 && mkdir -p /build/r-bioc-rcpi-eoCxxv && dpkg-source --no-check -x /*.dsc /build/r-bioc-rcpi-eoCxxv/r-bioc-rcpi-1.32.2+ds && chown -R builduser:builduser /build/r-bioc-rcpi-eoCxxv"' exec /tmp/mmdebstrap.YV0x9A5Djg Reading package lists... NOTICE: 'r-bioc-rcpi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-rcpi.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-rcpi.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1502 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20220727T032506Z bookworm/main r-bioc-rcpi 1.32.2+ds-1 (dsc) [2198 B] Get:2 http://snapshot.notset.fr/archive/debian/20220727T032506Z bookworm/main r-bioc-rcpi 1.32.2+ds-1 (tar) [1493 kB] Get:3 http://snapshot.notset.fr/archive/debian/20220727T032506Z bookworm/main r-bioc-rcpi 1.32.2+ds-1 (diff) [6144 B] Fetched 1502 kB in 1s (1289 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'r-bioc-rcpi_1.32.2+ds-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting r-bioc-rcpi in /build/r-bioc-rcpi-eoCxxv/r-bioc-rcpi-1.32.2+ds dpkg-source: info: unpacking r-bioc-rcpi_1.32.2+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-rcpi_1.32.2+ds-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-bioc-rcpi-eoCxxv/r-bioc-rcpi-1.32.2+ds && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1658727668" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.YV0x9A5Djg dpkg-buildpackage: info: source package r-bioc-rcpi dpkg-buildpackage: info: source version 1.32.2+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean --buildsystem R debian/rules override_dh_auto_clean make[1]: Entering directory '/build/r-bioc-rcpi-eoCxxv/r-bioc-rcpi-1.32.2+ds' dh_auto_clean rm -f inst/doc/Rcpi.html make[1]: Leaving directory '/build/r-bioc-rcpi-eoCxxv/r-bioc-rcpi-1.32.2+ds' dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-indep dh binary-indep --buildsystem R dh_update_autotools_config -i -O--buildsystem=R dh_autoreconf -i -O--buildsystem=R dh_auto_configure -i -O--buildsystem=R dh_auto_build -i -O--buildsystem=R dh: command-omitted: The call to "dh_auto_test -i -O--buildsystem=R" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=R dh_prep -i -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-rcpi/ -i -O--buildsystem=R I: R Package: Rcpi Version: 1.32.2 I: Building using R version 4.2.1-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Mon, 25 Jul 2022 07:41:08 +0200 mkdir -p /build/r-bioc-rcpi-eoCxxv/r-bioc-rcpi-1.32.2\+ds/debian/r-bioc-rcpi/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-rcpi-eoCxxv/r-bioc-rcpi-1.32.2\+ds/debian/r-bioc-rcpi/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 25 Jul 2022 07:41:08 +0200'" * installing *source* package ‘Rcpi’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading SLF4J: Class path contains multiple SLF4J bindings. SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/maven3-slf4j-provider.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-jcl.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-jdk14.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-log4j12.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-nop.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-simple.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. SLF4J: Actual binding is of type [org.slf4j.impl.MavenSimpleLoggerFactory] Could not read the System property used to determine if logging should be turned on. So continuing without logging. Could not read the System property used to determine if logging should be turned on. So continuing without logging. Could not read the System property used to determine if logging should be turned on. So continuing without logging. ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location SLF4J: Class path contains multiple SLF4J bindings. SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/maven3-slf4j-provider.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-jcl.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-jdk14.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-log4j12.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-nop.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-simple.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. SLF4J: Actual binding is of type [org.slf4j.impl.MavenSimpleLoggerFactory] Could not read the System property used to determine if logging should be turned on. So continuing without logging. Could not read the System property used to determine if logging should be turned on. So continuing without logging. Could not read the System property used to determine if logging should be turned on. So continuing without logging. ** testing if installed package can be loaded from final location SLF4J: Class path contains multiple SLF4J bindings. SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/maven3-slf4j-provider.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-jcl.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-jdk14.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-log4j12.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-nop.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: Found binding in [jar:file:/usr/lib/R/site-library/rcdklibs/cont/slf4j-simple.jar!/org/slf4j/impl/StaticLoggerBinder.class] SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation. SLF4J: Actual binding is of type [org.slf4j.impl.MavenSimpleLoggerFactory] Could not read the System property used to determine if logging should be turned on. So continuing without logging. Could not read the System property used to determine if logging should be turned on. So continuing without logging. Could not read the System property used to determine if logging should be turned on. So continuing without logging. ** testing if installed package keeps a record of temporary installation path * DONE (Rcpi) rm -f /build/r-bioc-rcpi-eoCxxv/r-bioc-rcpi-1.32.2\+ds/debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/LICENSE Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 304. W: Ignoring specified R dependency: R (>= 3.0.2) I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-runit for Suggests:RUnit I: Using r-bioc-biocgenerics for Suggests:BiocGenerics I: Using r-cran-rcurl for Imports:RCurl I: Using r-cran-rjson for Imports:rjson I: Using r-cran-foreach for Imports:foreach I: Using r-cran-doparallel for Imports:doParallel I: Using r-bioc-biostrings for Imports:Biostrings I: Using r-bioc-gosemsim for Imports:GOSemSim I: Using r-cran-rcdk for Imports:rcdk (>= 3.3.8) I: BioConductor API version: r-api-bioc-3.15 I: Use r-bioc-rcpi as Debian binary package for variables substitution dh_installdocs -i -O--buildsystem=R dh_installchangelogs -i -O--buildsystem=R dh_installsystemduser -i -O--buildsystem=R dh_perl -i -O--buildsystem=R dh_link -i -O--buildsystem=R dh_strip_nondeterminism -i -O--buildsystem=R dh_compress -i -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/r-bioc-rcpi-eoCxxv/r-bioc-rcpi-1.32.2+ds' dh_fixperms chmod -x debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/doc/Rcpi-quickref.Rmd \ debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/doc/Rcpi.Rmd \ debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/sysdata/CTDict.rda \ debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/sysdata/CTIndex.rda \ debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/sysdata/TCDict.rda \ debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/vignettedata/FDAMDD.smi make[1]: Leaving directory '/build/r-bioc-rcpi-eoCxxv/r-bioc-rcpi-1.32.2+ds' dh_missing -i -O--buildsystem=R dh_installdeb -i -O--buildsystem=R dh_gencontrol -i -O--buildsystem=R dh_md5sums -i -O--buildsystem=R dh_builddeb -i -O--buildsystem=R dpkg-deb: building package 'r-bioc-rcpi' in '../r-bioc-rcpi_1.32.2+ds-1_all.deb'. dpkg-genbuildinfo --build=all -O../r-bioc-rcpi_1.32.2+ds-1_all.buildinfo dpkg-genchanges --build=all -O../r-bioc-rcpi_1.32.2+ds-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/r-bioc-rcpi-eoCxxv /tmp/r-bioc-rcpi-1.32.2+ds-1bssb_t0l I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_root W: deleting files in /tmp: hsperfdata_builduser I: removing tempdir /tmp/mmdebstrap.YV0x9A5Djg... I: success in 906.1568 seconds md5: r-bioc-rcpi_1.32.2+ds-1_all.deb: OK sha1: r-bioc-rcpi_1.32.2+ds-1_all.deb: OK sha256: r-bioc-rcpi_1.32.2+ds-1_all.deb: OK Checksums: OK