Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/r/r-bioc-rcpi/r-bioc-rcpi_1.30.0+ds-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/r-bioc-rcpi-1.30.0+ds-1qw6n9lm6/r-bioc-rcpi_1.30.0+ds-1_all.buildinfo Get source package info: r-bioc-rcpi=1.30.0+ds-1 Source URL: http://snapshot.notset.fr/mr/package/r-bioc-rcpi/1.30.0+ds-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=ant=1.10.11-1 autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3.1 binfmt-support=2.2.1-1 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20211016 ca-certificates-java=20190909 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-12 dash=0.5.11+git20210903+057cd650a4ed-3 dctrl-tools=2.24-3+b1 debconf=1.5.79 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ncurses-bin=6.3-1 node-html5shiv=3.7.3+dfsg-3 node-normalize.css=8.0.1-5 openjdk-11-jre=11.0.13+8-1 openjdk-11-jre-headless=11.0.13+8-1 openssl=1.1.1l-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 r-base-core=4.1.2-1 r-base-dev=4.1.2-1 r-bioc-annotationdbi=1.56.2-1 r-bioc-biobase=2.54.0-1 r-bioc-biocgenerics=0.40.0-1 r-bioc-biostrings=2.62.0-1 r-bioc-chemminer=3.46.0+dfsg-1 r-bioc-fmcsr=1.36.0+dfsg-1 r-bioc-genomeinfodb=1.30.0-1 r-bioc-genomeinfodbdata=1.2.6-1 r-bioc-go.db=3.13.0-1 r-bioc-gosemsim=2.20.0-1 r-bioc-iranges=2.28.0-1 r-bioc-keggrest=1.34.0+dfsg-1 r-bioc-s4vectors=0.32.3-1 r-bioc-xvector=0.34.0-1 r-bioc-zlibbioc=1.40.0+dfsg-1 r-cran-askpass=1.1-2 r-cran-base64enc=0.1-3-3 r-cran-bh=1.74.0-2 r-cran-bit=4.0.4+dfsg-1 r-cran-bit64=4.0.5-1 r-cran-bitops=1.0-7-1 r-cran-blob=1.2.2-1 r-cran-cachem=1.0.6-1 r-cran-cli=3.1.0-1 r-cran-codetools=0.2-18-1 r-cran-colorspace=2.0-2+dfsg-1 r-cran-commonmark=1.7-2 r-cran-crayon=1.4.2-1 r-cran-crosstalk=1.2.0+dfsg-1 r-cran-curl=4.3.2+dfsg-1 r-cran-dbi=1.1.1-1 r-cran-digest=0.6.28-1 r-cran-doparallel=1.0.16-1 r-cran-dt=0.17+dfsg-3 r-cran-ellipsis=0.3.2-2 r-cran-fansi=0.5.0-1 r-cran-farver=2.1.0-1 r-cran-fastmap=1.1.0-1 r-cran-fingerprint=3.5.7-2+b1 r-cran-foreach=1.5.1-1 r-cran-ggplot2=3.3.5+dfsg-2 r-cran-glue=1.5.0-1 r-cran-gridextra=2.3-3 r-cran-gtable=0.3.0+dfsg-2 r-cran-htmltools=0.5.2-1 r-cran-htmlwidgets=1.5.4+dfsg-1 r-cran-httpuv=1.6.3+dfsg-1 r-cran-httr=1.4.2-1 r-cran-isoband=0.2.5-1 r-cran-iterators=1.0.13-1 r-cran-itertools=0.1-3-3 r-cran-jsonlite=1.7.2+dfsg-1 r-cran-labeling=0.4.2-1 r-cran-later=1.3.0+dfsg-1 r-cran-lattice=0.20-45-1 r-cran-lazyeval=0.2.2-1+b1 r-cran-lifecycle=1.0.1-1 r-cran-littler=0.3.14-1 r-cran-magrittr=2.0.1-1 r-cran-mass=7.3-54-2 r-cran-matrix=1.3-4-2 r-cran-memoise=2.0.0-1 r-cran-mgcv=1.8-38-1 r-cran-mime=0.12-1 r-cran-munsell=0.5.0-2 r-cran-nlme=3.1.153-1 r-cran-openssl=1.4.5+dfsg-1 r-cran-pillar=1.6.4+dfsg-1 r-cran-pkgconfig=2.0.3-2 r-cran-pkgkitten=0.2.2-2 r-cran-plogr=0.2.0-3 r-cran-png=0.1-7-4 r-cran-promises=1.2.0.1+dfsg-1 r-cran-r6=2.5.1-1 r-cran-rcdk=3.6.0+dfsg-1 r-cran-rcdklibs=2.3+dfsg-8 r-cran-rcolorbrewer=1.1-2-3 r-cran-rcpp=1.0.7-2 r-cran-rcurl=1.98-1.5-1 r-cran-rjava=1.0-5-1 r-cran-rjson=0.2.20-2 r-cran-rlang=0.4.12-2 r-cran-rsqlite=2.2.8-1 r-cran-rsvg=2.1.2-1 r-cran-runit=0.4.32-3 r-cran-scales=1.1.1-1 r-cran-shiny=1.5.0+dfsg-2 r-cran-sourcetools=0.1.7-3 r-cran-stringi=1.7.5-1 r-cran-sys=3.4-1 r-cran-tibble=3.1.6+dfsg-1 r-cran-utf8=1.2.2-1 r-cran-vctrs=0.3.8-2 r-cran-viridislite=0.4.0-2 r-cran-withr=2.4.2-1 r-cran-xtable=1:1.8-4-2 r-cran-yaml=2.2.1-1+b1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sgml-base=1.30 shared-mime-info=2.0-1 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 tzdata=2021e-1 ucf=3.0043 unzip=6.0-26 util-linux=2.37.2-4 velocity=1.7-6 x11-common=1:7.7+23 xauth=1:1.1-1 xdg-utils=1.1.3-4.1 xz-utils=5.2.5-2 zip=3.0-12 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211126T030046Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20211126T030046Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211126T150138Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d r-bioc-rcpi=1.30.0+ds-1 && mkdir -p /build/r-bioc-rcpi-sVDz85 && dpkg-source --no-check -x /*.dsc /build/r-bioc-rcpi-sVDz85/r-bioc-rcpi-1.30.0+ds && chown -R builduser:builduser /build/r-bioc-rcpi-sVDz85" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-bioc-rcpi-sVDz85/r-bioc-rcpi-1.30.0+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1637874799" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/r-bioc-rcpi-sVDz85 /tmp/r-bioc-rcpi-1.30.0+ds-1qw6n9lm6 bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211126T150138Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.HZR7grjvN_ as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.HZR7grjvN_ Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211126T150138Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211126T150138Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1019 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4672 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211126T030046Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20211126T030046Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211126T150138Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.HZR7grjvN_ Get:1 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable InRelease [165 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211126T150138Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main Sources [12.5 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main amd64 Packages [12.0 MB] Fetched 24.7 MB in 23s (1086 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.HZR7grjvN_ I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d r-bioc-rcpi=1.30.0+ds-1 && mkdir -p /build/r-bioc-rcpi-sVDz85 && dpkg-source --no-check -x /*.dsc /build/r-bioc-rcpi-sVDz85/r-bioc-rcpi-1.30.0+ds && chown -R builduser:builduser /build/r-bioc-rcpi-sVDz85"' exec /tmp/mmdebstrap.HZR7grjvN_ Reading package lists... NOTICE: 'r-bioc-rcpi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-rcpi.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-rcpi.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1471 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main r-bioc-rcpi 1.30.0+ds-1 (dsc) [2276 B] Get:2 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main r-bioc-rcpi 1.30.0+ds-1 (tar) [1462 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main r-bioc-rcpi 1.30.0+ds-1 (diff) [6340 B] Fetched 1471 kB in 1s (1244 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'r-bioc-rcpi_1.30.0+ds-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting r-bioc-rcpi in /build/r-bioc-rcpi-sVDz85/r-bioc-rcpi-1.30.0+ds dpkg-source: info: unpacking r-bioc-rcpi_1.30.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-rcpi_1.30.0+ds-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-bioc-rcpi-sVDz85/r-bioc-rcpi-1.30.0+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1637874799" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.HZR7grjvN_ dpkg-buildpackage: info: source package r-bioc-rcpi dpkg-buildpackage: info: source version 1.30.0+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean --buildsystem R debian/rules override_dh_auto_clean make[1]: Entering directory '/build/r-bioc-rcpi-sVDz85/r-bioc-rcpi-1.30.0+ds' dh_auto_clean rm -f inst/doc/Rcpi.html make[1]: Leaving directory '/build/r-bioc-rcpi-sVDz85/r-bioc-rcpi-1.30.0+ds' dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-indep dh binary-indep --buildsystem R dh_update_autotools_config -i -O--buildsystem=R dh_autoreconf -i -O--buildsystem=R dh_auto_configure -i -O--buildsystem=R dh_auto_build -i -O--buildsystem=R dh_auto_test -i -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=R dh_prep -i -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-rcpi/ -i -O--buildsystem=R I: R packages needed for DEP8: runit I: R Package: Rcpi Version: 1.30.0 I: Building using R version 4.1.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 25 Nov 2021 22:13:19 +0100 mkdir -p /build/r-bioc-rcpi-sVDz85/r-bioc-rcpi-1.30.0\+ds/debian/r-bioc-rcpi/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-rcpi-sVDz85/r-bioc-rcpi-1.30.0\+ds/debian/r-bioc-rcpi/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 25 Nov 2021 22:13:19 +0100'" * installing *source* package ‘Rcpi’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpi) rm -f /build/r-bioc-rcpi-sVDz85/r-bioc-rcpi-1.30.0\+ds/debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/LICENSE W: Ignoring specified R dependency: R (>= 3.0.2) I: Using r-cran-runit for Recommends:runit I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-biocgenerics for Suggests:BiocGenerics I: Using r-cran-rcurl for Imports:RCurl I: Using r-cran-rjson for Imports:rjson I: Using r-cran-foreach for Imports:foreach I: Using r-cran-doparallel for Imports:doParallel I: Using r-bioc-biostrings for Imports:Biostrings I: Using r-bioc-gosemsim for Imports:GOSemSim I: Using r-bioc-chemminer for Imports:ChemmineR I: Using r-bioc-fmcsr for Imports:fmcsR I: Using r-cran-rcdk for Imports:rcdk (>= 3.3.8) I: BioConductor API version: r-api-bioc-3.14 I: Use r-bioc-rcpi as Debian binary package for variables substitution dh_installdocs -i -O--buildsystem=R dh_installchangelogs -i -O--buildsystem=R dh_installsystemduser -i -O--buildsystem=R dh_perl -i -O--buildsystem=R dh_link -i -O--buildsystem=R dh_strip_nondeterminism -i -O--buildsystem=R dh_compress -i -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/r-bioc-rcpi-sVDz85/r-bioc-rcpi-1.30.0+ds' dh_fixperms chmod -x debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/doc/Rcpi-quickref.Rmd \ debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/doc/Rcpi.Rmd \ debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/sysdata/CTDict.rda \ debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/sysdata/CTIndex.rda \ debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/sysdata/TCDict.rda \ debian/r-bioc-rcpi/usr/lib/R/site-library/Rcpi/vignettedata/FDAMDD.smi make[1]: Leaving directory '/build/r-bioc-rcpi-sVDz85/r-bioc-rcpi-1.30.0+ds' dh_missing -i -O--buildsystem=R dh_installdeb -i -O--buildsystem=R dh_gencontrol -i -O--buildsystem=R dh_md5sums -i -O--buildsystem=R dh_builddeb -i -O--buildsystem=R dpkg-deb: building package 'r-bioc-rcpi' in '../r-bioc-rcpi_1.30.0+ds-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../r-bioc-rcpi_1.30.0+ds-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/r-bioc-rcpi-sVDz85 /tmp/r-bioc-rcpi-1.30.0+ds-1qw6n9lm6 I: cleaning package lists and apt cache... W: deleting files in /tmp: hsperfdata_root W: deleting files in /tmp: hsperfdata_builduser I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.HZR7grjvN_... I: success in 3558.1965 seconds md5: r-bioc-rcpi_1.30.0+ds-1_all.deb: OK sha1: r-bioc-rcpi_1.30.0+ds-1_all.deb: OK sha256: r-bioc-rcpi_1.30.0+ds-1_all.deb: OK Checksums: OK