Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/r/r-bioc-experimenthub/r-bioc-experimenthub_2.2.0+ds-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/r-bioc-experimenthub-2.2.0+ds-1ltdx05nw/r-bioc-experimenthub_2.2.0+ds-1_all.buildinfo Get source package info: r-bioc-experimenthub=2.2.0+ds-1 Source URL: http://snapshot.notset.fr/mr/package/r-bioc-experimenthub/2.2.0+ds-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3.1 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-4 ca-certificates=20211016 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-12 dash=0.5.11+git20210903+057cd650a4ed-3 dctrl-tools=2.24-3+b1 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-r=20210816 dh-strip-nondeterminism=1.12.1-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-font-awesome=5.0.10+really4.7.0~dfsg-4.1 fonts-glyphicons-halflings=1.009~3.4.1+dfsg-2 g++=4:11.2.0-2 g++-11=11.2.0-12 gcc=4:11.2.0-2 gcc-11=11.2.0-12 gcc-11-base=11.2.0-12 gettext=0.21-4 gettext-base=0.21-4 gfortran=4:11.2.0-2 gfortran-11=11.2.0-12 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 icu-devtools=67.1-7 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libalgorithm-c3-perl=0.11-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-12 libatomic1=11.2.0-12 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libb-hooks-endofscope-perl=0.25-1 libb-hooks-op-check-perl=0.22-1+b3 libbinutils=2.37-10 libblas-dev=3.10.0-1 libblas3=3.10.0-1 libblkid1=2.37.2-4 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-4 libbz2-dev=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-12 libclass-c3-perl=0.35-1 libclass-load-perl=0.25-1 libclass-load-xs-perl=0.10-1+b5 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.26-1 libcrypt1=1:4.4.26-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcurl3-gnutls=7.79.1-2 libcurl4=7.79.1-2 libdata-optlist-perl=0.112-1 libdatrie1=0.2.13-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdeflate0=1.8-1 libdevel-callchecker-perl=0.008-1+b2 libdevel-globaldestruction-perl=0.14-1.1 libdevel-overloadinfo-perl=0.007-1 libdevel-stacktrace-perl=2.0400-1 libdist-checkconflicts-perl=0.11-1.1 libdpkg-perl=1.20.9 libdynaloader-functions-perl=0.003-1.1 libelf1=0.186-1 libencode-locale-perl=1.05-1.1 libeval-closure-perl=0.14-1 libexpat1=2.4.1-3 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.1-1 libfile-which-perl=1.23-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.11.0+dfsg-1 libfribidi0=1.0.8-2 libgcc-11-dev=11.2.0-12 libgcc-s1=11.2.0-12 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran-11-dev=11.2.0-12 libgfortran5=11.2.0-12 libglib2.0-0=2.70.1-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-2 libgomp1=11.2.0-12 libgpg-error0=1.42-3 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libharfbuzz0b=2.7.4-1 libhogweed6=3.7.3-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.35-1 libice6=2:1.0.10-1 libicu-dev=67.1-7 libicu67=67.1-7 libidn2-0=2.3.2-2 libio-html-perl=1.004-2 libisl23=0.24-2 libitm1=11.2.0-12 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.1.1-2 libjpeg62-turbo=1:2.1.1-2 libjpeg62-turbo-dev=1:2.1.1-2 libjs-bootstrap=3.4.1+dfsg-2 libjs-d3=3.5.17-4 libjs-es5-shim=4.6.2-1 libjs-highlight.js=9.18.5+dfsg1-1 libjs-jquery=3.5.1+dfsg+~3.5.5-8 libjs-jquery-datatables=1.10.21+dfsg-3 libjs-jquery-datatables-extensions=0.0+git20150910.28fd64e+dfsg-5 libjs-jquery-selectize.js=0.12.6+dfsg-1.1 libjs-jquery-ui=1.13.0+dfsg-1 libjs-json=0~20210531+~1.0.5-1 libjs-microplugin.js=0.0.3+dfsg-1.1 libjs-sifter.js=0.6.0+dfsg-2 libjs-twitter-bootstrap-datepicker=1.3.1+dfsg1-4.1 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack-dev=3.10.0-1 liblapack3=3.10.0-1 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-12 liblwp-mediatypes-perl=6.04-1 liblz4-1=1.9.3-2 liblzma-dev=5.2.5-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libmodule-implementation-perl=0.09-1.1 libmodule-runtime-conflicts-perl=0.003-1.1 libmodule-runtime-perl=0.016-1 libmoose-perl=2.2200-1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libmro-compat-perl=0.13-1 libnamespace-clean-perl=0.27-1 libncurses-dev=6.3-1 libncurses5-dev=6.3-1 libncurses6=6.3-1 libncursesw6=6.3-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-5 libpackage-deprecationmanager-perl=0.17-1.1 libpackage-stash-perl=0.39-1 libpackage-stash-xs-perl=0.29-1+b2 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpango-1.0-0=1.48.10+ds1-1 libpangocairo-1.0-0=1.48.10+ds1-1 libpangoft2-1.0-0=1.48.10+ds1-1 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libparams-classify-perl=0.015-1+b3 libparams-util-perl=1.102-1+b1 libpcre16-3=2:8.39-13 libpcre2-16-0=10.39-3 libpcre2-32-0=10.39-3 libpcre2-8-0=10.39-3 libpcre2-dev=10.39-3 libpcre2-posix3=10.39-3 libpcre3=2:8.39-13 libpcre3-dev=2:8.39-13 libpcre32-3=2:8.39-13 libpcrecpp0v5=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpixman-1-0=0.40.0-1 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libpsl5=0.21.0-1.2 libquadmath0=11.2.0-12 libreadline-dev=8.1-2 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-2 libsasl2-modules-db=2.1.27+dfsg2-2 libscalar-list-utils-perl=1:1.59-1 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-4 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-12 libstdc++6=11.2.0-12 libsub-exporter-perl=0.988-1 libsub-exporter-progressive-perl=0.001013-1 libsub-identify-perl=0.14-1+b3 libsub-install-perl=0.928-1.1 libsub-name-perl=0.26-1+b1 libsub-override-perl=0.09-2 libswitch-perl=2.17-2.1 libsystemd0=249.7-1 libtasn1-6=4.18.0-4 libtcl8.6=8.6.12+dfsg-1 libthai-data=0.1.28-4.1 libthai0=0.1.28-4.1 libtiff5=4.3.0-2 libtimedate-perl=2.3300-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtk8.6=8.6.12-1 libtool=2.4.6-15 libtry-tiny-perl=0.30-1 libtsan0=11.2.0-12 libubsan1=11.2.0-12 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 liburi-perl=5.10-1 libuuid1=2.37.2-4 libuv1=1.42.0-1 libvariable-magic-perl=0.62-1+b3 libwebp6=0.6.1-2.1 libwww-curl-perl=4.17-7+b1 libwww-curl-simple-perl=0.100191-2 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libxau6=1:1.0.9-1 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxft2=2.3.2-2 libxml2=2.9.12+dfsg-5+b1 libxmuu1=2:1.1.2-2+b3 libxrender1=1:0.9.10-1 libxss1=1:1.2.3-1 libxt6=1:1.2.0-1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.3-1 littler=0.3.14-1 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.3-1 ncurses-bin=6.3-1 node-html5shiv=3.7.3+dfsg-3 node-normalize.css=8.0.1-5 openssl=1.1.1l-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 r-base-core=4.1.2-1 r-base-dev=4.1.2-1 r-bioc-annotationdbi=1.56.2-1 r-bioc-annotationhub=3.2.0+dfsg-1 r-bioc-biobase=2.54.0-1 r-bioc-biocfilecache=2.2.0+dfsg-1 r-bioc-biocgenerics=0.40.0-1 r-bioc-biocversion=3.14.0-1 r-bioc-biostrings=2.62.0-1 r-bioc-genomeinfodb=1.30.0-1 r-bioc-genomeinfodbdata=1.2.6-1 r-bioc-interactivedisplaybase=1.32.0+dfsg-1 r-bioc-iranges=2.28.0-1 r-bioc-keggrest=1.34.0+dfsg-1 r-bioc-s4vectors=0.32.3-1 r-bioc-xvector=0.34.0-1 r-bioc-zlibbioc=1.40.0+dfsg-1 r-cran-askpass=1.1-2 r-cran-assertthat=0.2.1-2 r-cran-base64enc=0.1-3-3 r-cran-biocmanager=1.30.16+dfsg-3 r-cran-bit=4.0.4+dfsg-1 r-cran-bit64=4.0.5-1 r-cran-bitops=1.0-7-1 r-cran-blob=1.2.2-1 r-cran-cachem=1.0.6-1 r-cran-cli=3.1.0-1 r-cran-commonmark=1.7-2 r-cran-crayon=1.4.2-1 r-cran-crosstalk=1.2.0+dfsg-1 r-cran-curl=4.3.2+dfsg-1 r-cran-dbi=1.1.1-1 r-cran-dbplyr=2.1.1-1 r-cran-digest=0.6.28-1 r-cran-dplyr=1.0.7-2 r-cran-dt=0.17+dfsg-3 r-cran-ellipsis=0.3.2-2 r-cran-fansi=0.5.0-1 r-cran-fastmap=1.1.0-1 r-cran-filelock=1.0.2-2 r-cran-generics=0.1.1-1 r-cran-glue=1.5.0-1 r-cran-htmltools=0.5.2-1 r-cran-htmlwidgets=1.5.4+dfsg-1 r-cran-httpuv=1.6.3+dfsg-1 r-cran-httr=1.4.2-1 r-cran-jsonlite=1.7.2+dfsg-1 r-cran-later=1.3.0+dfsg-1 r-cran-lazyeval=0.2.2-1+b1 r-cran-lifecycle=1.0.1-1 r-cran-littler=0.3.14-1 r-cran-magrittr=2.0.1-1 r-cran-memoise=2.0.0-1 r-cran-mime=0.12-1 r-cran-openssl=1.4.5+dfsg-1 r-cran-pillar=1.6.4+dfsg-1 r-cran-pkgconfig=2.0.3-2 r-cran-pkgkitten=0.2.2-2 r-cran-plogr=0.2.0-3 r-cran-png=0.1-7-4 r-cran-promises=1.2.0.1+dfsg-1 r-cran-purrr=0.3.4-1+b1 r-cran-r6=2.5.1-1 r-cran-rappdirs=0.3.3-1 r-cran-rcpp=1.0.7-2 r-cran-rcurl=1.98-1.5-1 r-cran-rlang=0.4.12-2 r-cran-rsqlite=2.2.8-1 r-cran-shiny=1.5.0+dfsg-2 r-cran-sourcetools=0.1.7-3 r-cran-sys=3.4-1 r-cran-tibble=3.1.6+dfsg-1 r-cran-tidyselect=1.1.1+dfsg-1 r-cran-utf8=1.2.2-1 r-cran-vctrs=0.3.8-2 r-cran-withr=2.4.2-1 r-cran-xtable=1:1.8-4-2 r-cran-yaml=2.2.1-1+b1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 tzdata=2021e-1 ucf=3.0043 unzip=6.0-26 util-linux=2.37.2-4 x11-common=1:7.7+23 xauth=1:1.1-1 xdg-utils=1.1.3-4.1 xz-utils=5.2.5-2 zip=3.0-12 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211126T030046Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20211126T030046Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211126T150138Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d r-bioc-experimenthub=2.2.0+ds-1 && mkdir -p /build/r-bioc-experimenthub-rh8ENE && dpkg-source --no-check -x /*.dsc /build/r-bioc-experimenthub-rh8ENE/r-bioc-experimenthub-2.2.0+ds && chown -R builduser:builduser /build/r-bioc-experimenthub-rh8ENE" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-bioc-experimenthub-rh8ENE/r-bioc-experimenthub-2.2.0+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1637872889" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/r-bioc-experimenthub-rh8ENE /tmp/r-bioc-experimenthub-2.2.0+ds-1ltdx05nw bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211126T150138Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.bOg_sVbu59 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.bOg_sVbu59 Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211126T150138Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211126T150138Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1048 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4672 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211126T030046Z/ unstable main deb-src http://snapshot.notset.fr/archive/debian/20211126T030046Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20211126T150138Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.bOg_sVbu59 Get:1 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable InRelease [165 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211126T150138Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main Sources [12.5 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main amd64 Packages [12.0 MB] Fetched 24.7 MB in 20s (1205 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.bOg_sVbu59 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d r-bioc-experimenthub=2.2.0+ds-1 && mkdir -p /build/r-bioc-experimenthub-rh8ENE && dpkg-source --no-check -x /*.dsc /build/r-bioc-experimenthub-rh8ENE/r-bioc-experimenthub-2.2.0+ds && chown -R builduser:builduser /build/r-bioc-experimenthub-rh8ENE"' exec /tmp/mmdebstrap.bOg_sVbu59 Reading package lists... NOTICE: 'r-bioc-experimenthub' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-experimenthub.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-experimenthub.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 21.9 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main r-bioc-experimenthub 2.2.0+ds-1 (dsc) [2280 B] Get:2 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main r-bioc-experimenthub 2.2.0+ds-1 (tar) [14.5 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211126T030046Z unstable/main r-bioc-experimenthub 2.2.0+ds-1 (diff) [5088 B] Fetched 21.9 kB in 0s (397 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'r-bioc-experimenthub_2.2.0+ds-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting r-bioc-experimenthub in /build/r-bioc-experimenthub-rh8ENE/r-bioc-experimenthub-2.2.0+ds dpkg-source: info: unpacking r-bioc-experimenthub_2.2.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-experimenthub_2.2.0+ds-1.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-bioc-experimenthub-rh8ENE/r-bioc-experimenthub-2.2.0+ds && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1637872889" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.bOg_sVbu59 dpkg-buildpackage: info: source package r-bioc-experimenthub dpkg-buildpackage: info: source version 2.2.0+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-indep dh binary-indep --buildsystem R dh_update_autotools_config -i -O--buildsystem=R dh_autoreconf -i -O--buildsystem=R dh_auto_configure -i -O--buildsystem=R dh_auto_build -i -O--buildsystem=R dh_auto_test -i -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=R dh_prep -i -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-experimenthub/ -i -O--buildsystem=R I: R Package: ExperimentHub Version: 2.2.0 I: Building using R version 4.1.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 25 Nov 2021 21:41:29 +0100 mkdir -p /build/r-bioc-experimenthub-rh8ENE/r-bioc-experimenthub-2.2.0\+ds/debian/r-bioc-experimenthub/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-experimenthub-rh8ENE/r-bioc-experimenthub-2.2.0\+ds/debian/r-bioc-experimenthub/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 25 Nov 2021 21:41:29 +0100'" * installing *source* package ‘ExperimentHub’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ExperimentHub) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303. I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.15.10) I: Using r-bioc-annotationhub for Depends:AnnotationHub (>= 2.19.3) I: Using r-bioc-biocfilecache for Depends:BiocFileCache (>= 1.5.1) I: Using r-cran-knitr for Suggests:knitr I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-rmarkdown for Suggests:rmarkdown W: Cannot find a debian package for Suggests:HubPub I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-cran-biocmanager for Imports:BiocManager I: Using r-cran-curl for Imports:curl I: Using r-cran-rappdirs for Imports:rappdirs I: BioConductor API version: r-api-bioc-3.14 I: Use r-bioc-experimenthub as Debian binary package for variables substitution dh_installdocs -i -O--buildsystem=R dh_installchangelogs -i -O--buildsystem=R dh_installsystemduser -i -O--buildsystem=R dh_perl -i -O--buildsystem=R dh_link -i -O--buildsystem=R dh_strip_nondeterminism -i -O--buildsystem=R dh_compress -i -O--buildsystem=R dh_fixperms -i -O--buildsystem=R dh_missing -i -O--buildsystem=R dh_installdeb -i -O--buildsystem=R dh_gencontrol -i -O--buildsystem=R dh_md5sums -i -O--buildsystem=R dh_builddeb -i -O--buildsystem=R dpkg-deb: building package 'r-bioc-experimenthub' in '../r-bioc-experimenthub_2.2.0+ds-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../r-bioc-experimenthub_2.2.0+ds-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/r-bioc-experimenthub-rh8ENE /tmp/r-bioc-experimenthub-2.2.0+ds-1ltdx05nw I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.bOg_sVbu59... I: success in 3163.7653 seconds md5: r-bioc-experimenthub_2.2.0+ds-1_all.deb: OK sha1: r-bioc-experimenthub_2.2.0+ds-1_all.deb: OK sha256: r-bioc-experimenthub_2.2.0+ds-1_all.deb: OK Checksums: OK