Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/r/r-bioc-biocparallel/r-bioc-biocparallel_1.28.3-1_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/r-bioc-biocparallel-1.28.3-1c1fpjjbc/r-bioc-biocparallel_1.28.3-1_amd64.buildinfo Get source package info: r-bioc-biocparallel=1.28.3-1 Source URL: http://snapshot.notset.fr/mr/package/r-bioc-biocparallel/1.28.3-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.5-1.1 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-5+b1 binutils=2.37-10 binutils-common=2.37-10 binutils-x86-64-linux-gnu=2.37-10 bsdextrautils=2.37.2-4 bsdutils=1:2.37.2-4 build-essential=12.9 bzip2=1.0.8-5 ca-certificates=20211016 coreutils=8.32-4.1 cpp=4:11.2.0-2 cpp-11=11.2.0-13 dash=0.5.11+git20210903+057cd650a4ed-3 dctrl-tools=2.24-3+b1 debconf=1.5.79 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-r=20210816 dh-strip-nondeterminism=1.12.1-1 diffutils=1:3.7-5 dpkg=1.21.1 dpkg-dev=1.21.1 dwz=0.14-1 file=1:5.41-2 findutils=4.8.0-1 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 g++=4:11.2.0-2 g++-11=11.2.0-13 gcc=4:11.2.0-2 gcc-11=11.2.0-13 gcc-11-base=11.2.0-13 gettext=0.21-4 gettext-base=0.21-4 gfortran=4:11.2.0-2 gfortran-11=11.2.0-13 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 icu-devtools=67.1-7 init-system-helpers=1.61 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libalgorithm-c3-perl=0.11-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-13 libatomic1=11.2.0-13 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1+b1 libb-hooks-endofscope-perl=0.25-1 libb-hooks-op-check-perl=0.22-1+b3 libbinutils=2.37-10 libblas-dev=3.10.0-2 libblas3=3.10.0-2 libblkid1=2.37.2-4 libboost-dev=1.74.0.3 libboost1.74-dev=1.74.0-13 libbrotli1=1.0.9-2+b3 libbsd0=0.11.3-1 libbz2-1.0=1.0.8-5 libbz2-dev=1.0.8-5 libc-bin=2.33-1 libc-dev-bin=2.33-1 libc6=2.33-1 libc6-dev=2.33-1 libcairo2=1.16.0-5 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-13 libclass-c3-perl=0.35-1 libclass-load-perl=0.25-1 libclass-load-xs-perl=0.10-1+b5 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.27-1 libcrypt1=1:4.4.27-1 libctf-nobfd0=2.37-10 libctf0=2.37-10 libcurl3-gnutls=7.79.1-2 libcurl4=7.79.1-2 libdata-optlist-perl=0.112-1 libdatrie1=0.2.13-2 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.261 libdebhelper-perl=13.5.2 libdeflate0=1.8-1 libdevel-callchecker-perl=0.008-1+b2 libdevel-globaldestruction-perl=0.14-1.1 libdevel-overloadinfo-perl=0.007-1 libdevel-stacktrace-perl=2.0400-1 libdist-checkconflicts-perl=0.11-1.1 libdpkg-perl=1.21.1 libdynaloader-functions-perl=0.003-1.1 libelf1=0.186-1 libencode-locale-perl=1.05-1.1 libeval-closure-perl=0.14-1 libexpat1=2.4.1-3 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.1-1 libfile-which-perl=1.23-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.11.0+dfsg-1 libfribidi0=1.0.8-2 libgcc-11-dev=11.2.0-13 libgcc-s1=11.2.0-13 libgcrypt20=1.9.4-5 libgdbm-compat4=1.22-1 libgdbm6=1.22-1 libgfortran-11-dev=11.2.0-13 libgfortran5=11.2.0-13 libglib2.0-0=2.70.2-1 libgmp10=2:6.2.1+dfsg-3 libgnutls30=3.7.2-4 libgomp1=11.2.0-13 libgpg-error0=1.43-1 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-7 libharfbuzz0b=2.7.4-1 libhogweed6=3.7.3-1 libhttp-date-perl=6.05-1 libhttp-message-perl=6.35-1 libice6=2:1.0.10-1 libicu-dev=67.1-7 libicu67=67.1-7 libidn2-0=2.3.2-2 libio-html-perl=1.004-2 libisl23=0.24-2 libitm1=11.2.0-13 libjbig0=2.1-3.1+b2 libjpeg-dev=1:2.1.2-1 libjpeg62-turbo=1:2.1.2-1 libjpeg62-turbo-dev=1:2.1.2-1 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 liblapack-dev=3.10.0-2 liblapack3=3.10.0-2 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-13 liblwp-mediatypes-perl=6.04-1 liblz4-1=1.9.3-2 liblzma-dev=5.2.5-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.41-2 libmagic1=1:5.41-2 libmd0=1.0.4-1 libmodule-implementation-perl=0.09-1.1 libmodule-runtime-conflicts-perl=0.003-1.1 libmodule-runtime-perl=0.016-1 libmoose-perl=2.2200-1 libmount1=2.37.2-4 libmpc3=1.2.1-1 libmpfr6=4.1.0-3 libmro-compat-perl=0.13-1 libnamespace-clean-perl=0.27-1 libncurses-dev=6.3-1 libncurses5-dev=6.3-1 libncurses6=6.3-1 libncursesw6=6.3-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-6 libpackage-deprecationmanager-perl=0.17-1.1 libpackage-stash-perl=0.39-1 libpackage-stash-xs-perl=0.29-1+b2 libpam-modules=1.4.0-11 libpam-modules-bin=1.4.0-11 libpam-runtime=1.4.0-11 libpam0g=1.4.0-11 libpango-1.0-0=1.48.10+ds1-1 libpangocairo-1.0-0=1.48.10+ds1-1 libpangoft2-1.0-0=1.48.10+ds1-1 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libparams-classify-perl=0.015-1+b3 libparams-util-perl=1.102-1+b1 libpcre16-3=2:8.39-13 libpcre2-16-0=10.39-3 libpcre2-32-0=10.39-3 libpcre2-8-0=10.39-3 libpcre2-dev=10.39-3 libpcre2-posix3=10.39-3 libpcre3=2:8.39-13 libpcre3-dev=2:8.39-13 libpcre32-3=2:8.39-13 libpcrecpp0v5=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.4-1 libpixman-1-0=0.40.0-1 libpng-dev=1.6.37-3 libpng16-16=1.6.37-3 libpsl5=0.21.0-1.2 libquadmath0=11.2.0-13 libreadline-dev=8.1-2 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg2-2 libsasl2-modules-db=2.1.27+dfsg2-2 libscalar-list-utils-perl=1:1.59-1 libseccomp2=2.5.3-2 libselinux1=3.3-1+b1 libsigsegv2=2.13-1 libsm6=2:1.2.3-1 libsmartcols1=2.37.2-4 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-13 libstdc++6=11.2.0-13 libsub-exporter-perl=0.988-1 libsub-exporter-progressive-perl=0.001013-1 libsub-identify-perl=0.14-1+b3 libsub-install-perl=0.928-1.1 libsub-name-perl=0.26-1+b1 libsub-override-perl=0.09-2 libswitch-perl=2.17-2.1 libsystemd0=249.7-1 libtasn1-6=4.18.0-4 libtcl8.6=8.6.12+dfsg-1 libthai-data=0.1.28-4.1 libthai0=0.1.28-4.1 libtiff5=4.3.0-2 libtimedate-perl=2.3300-2 libtinfo6=6.3-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtk8.6=8.6.12-1 libtool=2.4.6-15 libtry-tiny-perl=0.31-1 libtsan0=11.2.0-13 libubsan1=11.2.0-13 libuchardet0=0.0.7-1 libudev1=249.7-1 libunistring2=0.9.10-6 liburi-perl=5.10-1 libuuid1=2.37.2-4 libvariable-magic-perl=0.62-1+b3 libwebp6=0.6.1-2.1 libwww-curl-perl=4.17-7+b1 libwww-curl-simple-perl=0.100191-2 libx11-6=2:1.7.2-2+b1 libx11-data=2:1.7.2-2 libxau6=1:1.0.9-1 libxcb-render0=1.14-3 libxcb-shm0=1.14-3 libxcb1=1.14-3 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.4-1 libxft2=2.3.2-2 libxml2=2.9.12+dfsg-5+b1 libxmuu1=2:1.1.2-2+b3 libxrender1=1:0.9.10-1 libxss1=1:1.2.3-1 libxt6=1:1.2.0-1 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.15.5-2 login=1:4.8.1-2 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 ncurses-base=6.3-1 ncurses-bin=6.3-1 openssl=1.1.1l-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 pkg-config=0.29.2-1 po-debconf=1.0.21+nmu1 r-base-core=4.1.2-1 r-base-dev=4.1.2-1 r-cran-bh=1.74.0-2 r-cran-formatr=1.11-1 r-cran-futile.logger=1.4.3-4 r-cran-futile.options=1.0.1-3 r-cran-lambda.r=1.2.4-2 r-cran-snow=1:0.4.4-1 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.01-1 tar=1.34+dfsg-1 tzdata=2021e-1 ucf=3.0043 unzip=6.0-26 util-linux=2.37.2-4 x11-common=1:7.7+23 xauth=1:1.1-1 xdg-utils=1.1.3-4.1 xz-utils=5.2.5-2 zip=3.0-12 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211222T025120Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211222T025120Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211220T093239Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d r-bioc-biocparallel=1.28.3-1 && mkdir -p /build/r-bioc-biocparallel-xRPZZ5 && dpkg-source --no-check -x /*.dsc /build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3 && chown -R builduser:builduser /build/r-bioc-biocparallel-xRPZZ5" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639990703" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/r-bioc-biocparallel-xRPZZ5 /tmp/r-bioc-biocparallel-1.28.3-1c1fpjjbc bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211220T093239Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.AWYSbcrhTK as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.AWYSbcrhTK Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211220T093239Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211220T093239Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (694 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4680 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.33-1) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211222T025120Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211222T025120Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211220T093239Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.AWYSbcrhTK Get:1 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm InRelease [129 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211220T093239Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main Sources [11.8 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.1 MB in 19s (1210 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.AWYSbcrhTK I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d r-bioc-biocparallel=1.28.3-1 && mkdir -p /build/r-bioc-biocparallel-xRPZZ5 && dpkg-source --no-check -x /*.dsc /build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3 && chown -R builduser:builduser /build/r-bioc-biocparallel-xRPZZ5"' exec /tmp/mmdebstrap.AWYSbcrhTK Reading package lists... NOTICE: 'r-bioc-biocparallel' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-biocparallel.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-biocparallel.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 892 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main r-bioc-biocparallel 1.28.3-1 (dsc) [2312 B] Get:2 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main r-bioc-biocparallel 1.28.3-1 (tar) [884 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211222T025120Z bookworm/main r-bioc-biocparallel 1.28.3-1 (diff) [5232 B] Fetched 892 kB in 1s (1119 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'r-bioc-biocparallel_1.28.3-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting r-bioc-biocparallel in /build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3 dpkg-source: info: unpacking r-bioc-biocparallel_1.28.3.orig.tar.gz dpkg-source: info: unpacking r-bioc-biocparallel_1.28.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-unittests-compare-bpaggregate-and-aggregate-on-the-i.patch dpkg-source: info: applying deactivated_tests.patch dpkg-source: info: applying supplied_seed_is_not_a_valid_integer.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1639990703" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.AWYSbcrhTK dpkg-buildpackage: info: source package r-bioc-biocparallel dpkg-buildpackage: info: source version 1.28.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R debian/rules override_dh_auto_clean make[1]: Entering directory '/build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3' dh_auto_clean rm -f config.log config.status make[1]: Leaving directory '/build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3' dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=R" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-biocparallel/ -a -O--buildsystem=R I: R packages needed for DEP8: batchjobs (>= 1.6), runit, doparallel, rsamtools, batchtools, snow, rmpi I: R Package: BiocParallel Version: 1.28.3 I: Building using R version 4.1.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Mon, 20 Dec 2021 09:58:23 +0100 mkdir -p /build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3/debian/r-bioc-biocparallel/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3/debian/r-bioc-biocparallel/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 20 Dec 2021 09:58:23 +0100'" * installing *source* package ‘BiocParallel’ ... ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for shm_open in -lrt... yes configure: creating ./config.status config.status: creating src/Makevars ** libs make[1]: Entering directory '/build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3/src' g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/BH/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-PT7Nxy/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ipcmutex.cpp -o ipcmutex.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o BiocParallel.so ipcmutex.o -lrt -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3/src' make[1]: Entering directory '/build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3/src' make[1]: Leaving directory '/build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3/src' installing to /build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3/debian/r-bioc-biocparallel/usr/lib/R/site-library/00LOCK-r-bioc-biocparallel-1.28.3/00new/BiocParallel/libs ** R ** inst ** byte-compile and prepare package for lazy loading code for methods in class “BiocParallelParam” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “SnowParam” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “.BiocParallelRegistry” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “.BiocParallelRegistry” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “BatchJobsParam” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “BatchtoolsParam” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocParallel) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-cran-batchjobs for Recommends:batchjobs (>= 1.6) I: Using r-cran-runit for Recommends:runit I: Using r-cran-doparallel for Recommends:doparallel I: Using r-bioc-rsamtools for Recommends:rsamtools I: Using r-cran-batchtools for Recommends:batchtools I: Using r-cran-snow for Recommends:snow I: Using r-cran-rmpi for Recommends:rmpi I: Using r-bioc-biocgenerics for Suggests:BiocGenerics I: Using r-cran-foreach for Suggests:foreach I: Using r-cran-batchjobs for Suggests:BatchJobs I: Using r-cran-bbmisc for Suggests:BBmisc I: Using r-bioc-genomicranges for Suggests:GenomicRanges W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14 W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene I: Using r-bioc-variantannotation for Suggests:VariantAnnotation I: Using r-bioc-genomicalignments for Suggests:GenomicAlignments I: Using r-bioc-shortread for Suggests:ShortRead I: Using r-cran-codetools for Suggests:codetools I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-data.table for Suggests:data.table I: Using r-cran-futile.logger for Imports:futile.logger I: Using r-cran-snow for Imports:snow I: Using r-cran-bh for LinkingTo:BH I: BioConductor API version: r-api-bioc-3.14 I: Use r-bioc-biocparallel as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_lintian -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3' dh_fixperms find debian -name RMPInode.R -exec chmod -x \{\} \; make[1]: Leaving directory '/build/r-bioc-biocparallel-xRPZZ5/r-bioc-biocparallel-1.28.3' dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R dpkg-deb: building package 'r-bioc-biocparallel' in '../r-bioc-biocparallel_1.28.3-1_amd64.deb'. dpkg-deb: building package 'r-bioc-biocparallel-dbgsym' in '../r-bioc-biocparallel-dbgsym_1.28.3-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../r-bioc-biocparallel_1.28.3-1_amd64.buildinfo dpkg-genchanges --build=any -O../r-bioc-biocparallel_1.28.3-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/r-bioc-biocparallel-xRPZZ5 /tmp/r-bioc-biocparallel-1.28.3-1c1fpjjbc I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.AWYSbcrhTK... I: success in 466.5307 seconds md5: r-bioc-biocparallel-dbgsym_1.28.3-1_amd64.deb: OK md5: Value of 'md5' differs for r-bioc-biocparallel_1.28.3-1_amd64.deb md5: Size differs for r-bioc-biocparallel_1.28.3-1_amd64.deb sha1: r-bioc-biocparallel-dbgsym_1.28.3-1_amd64.deb: OK sha1: Value of 'sha1' differs for r-bioc-biocparallel_1.28.3-1_amd64.deb sha1: Size differs for r-bioc-biocparallel_1.28.3-1_amd64.deb sha256: r-bioc-biocparallel-dbgsym_1.28.3-1_amd64.deb: OK sha256: Value of 'sha256' differs for r-bioc-biocparallel_1.28.3-1_amd64.deb sha256: Size differs for r-bioc-biocparallel_1.28.3-1_amd64.deb Checksums: FAIL Cannot generate diffoscope for r-bioc-biocparallel_1.28.3-1_amd64.deb: RetryError[]