Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/q/qcat/qcat_1.1.0-2_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/qcat-1.1.0-2vllpvtyx/qcat_1.1.0-2_all.buildinfo Get source package info: qcat=1.1.0-2 Source URL: http://snapshot.notset.fr/mr/package/qcat/1.1.0-2/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-6 binutils=2.34-6 binutils-common=2.34-6 binutils-x86-64-linux-gnu=2.34-6 bsdmainutils=11.1.2+b1 bsdutils=1:2.34-0.1 build-essential=12.8 bzip2=1.0.8-2 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.3.0-10 dash=0.5.10.2-7 debconf=1.5.74 debhelper=13 debianutils=4.9.1 dh-autoreconf=19 dh-python=4.20200315 dh-strip-nondeterminism=1.8.0-1 diffutils=1:3.7-3 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-5 fdisk=2.34-0.1 file=1:5.38-4 findutils=4.7.0-1 g++=4:9.2.1-3.1 g++-9=9.3.0-10 gcc=4:9.2.1-3.1 gcc-10-base=10-20200418-1 gcc-9=9.3.0-10 gcc-9-base=9.3.0-10 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.4-1 groff-base=1.22.4-4 gzip=1.10-2 hostname=3.23 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-7 libarchive-zip-perl=1.68-1 libasan5=9.3.0-10 libatomic1=10-20200418-1 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libbinutils=2.34-6 libblas3=3.9.0-2 libblkid1=2.34-0.1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libc-bin=2.30-4 libc-dev-bin=2.30-4 libc6=2.30-4 libc6-dev=2.30-4 libcap-ng0=0.7.9-2.1+b2 libcc1-0=10-20200418-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.16-1 libcrypt1=1:4.4.16-1 libctf-nobfd0=2.34-6 libctf0=2.34-6 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.251 libdebhelper-perl=13 libdpkg-perl=1.19.7 libelf1=0.176-1.1 libexpat1=2.2.9-1 libfdisk1=2.34-0.1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.8.0-1 libfreetype6=2.10.1-2 libgcc-9-dev=9.3.0-10 libgcc-s1=10-20200418-1 libgcrypt20=1.8.5-5 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgfortran5=10-20200418-1 libglib2.0-0=2.64.2-1 libgmp10=2:6.2.0+dfsg-4 libgomp1=10-20200418-1 libgpg-error0=1.37-1 libicu63=63.2-3 libimagequant0=2.12.2-1.1 libisl22=0.22.1-1 libitm1=10-20200418-1 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:1.5.2-2+b1 libjs-jquery=3.3.1~dfsg-3 libjs-jquery-hotkeys=0~20130707+git2d51e3a9+dfsg-2 libjs-jquery-isonscreen=1.2.0-1 libjs-jquery-metadata=12-1.1 libjs-jquery-tablesorter=1:2.31.1+dfsg1-1 libjs-jquery-throttle-debounce=1.1+dfsg.1-1 liblapack3=3.9.0-2 liblcms2-2=2.9-4+b1 liblsan0=10-20200418-1 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-4 libmagic1=1:5.38-4 libmount1=2.34-0.1 libmpc3=1.1.0-1 libmpdec2=2.4.2-3 libmpfr6=4.0.2-1 libncursesw6=6.2-1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libparasail-dev=2.4.2+dfsg-2 libparasail3=2.4.2+dfsg-2 libpcre2-8-0=10.34-7 libpcre3=2:8.39-12+b1 libperl5.30=5.30.0-10 libpipeline1=1.5.2-2 libpng16-16=1.6.37-2 libpython3-stdlib=3.8.2-3 libpython3.8-minimal=3.8.2-1+b1 libpython3.8-stdlib=3.8.2-1+b1 libquadmath0=10-20200418-1 libreadline8=8.0-4 libseccomp2=2.4.3-1+b1 libselinux1=3.0-1+b3 libsigsegv2=2.12-2 libsmartcols1=2.34-0.1 libsqlite3-0=3.31.1-5 libssl1.1=1.1.1g-1 libstdc++-9-dev=9.3.0-10 libstdc++6=10-20200418-1 libsub-override-perl=0.09-2 libsystemd0=245.5-1 libtiff5=4.1.0+git191117-2 libtinfo6=6.2-1 libtool=2.4.6-14 libtsan0=10-20200418-1 libubsan1=10-20200418-1 libuchardet0=0.0.6-3 libudev1=245.5-1 libunistring2=0.9.10-2 libuuid1=2.34-0.1 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libxml2=2.9.10+dfsg-5 libyaml-0-2=0.2.2-1 libzstd1=1.4.4+dfsg-3 linux-libc-dev=5.5.17-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-1.2 man-db=2.9.1-1 mawk=1.3.4.20200120-2 mime-support=3.64 ncurses-base=6.2-1 ncurses-bin=6.2-1 patch=2.7.6-6 perl=5.30.0-10 perl-base=5.30.0-10 perl-modules-5.30=5.30.0-10 po-debconf=1.0.21 python3=3.8.2-3 python3-atomicwrites=1.1.5-4 python3-attr=19.3.0-4 python3-biopython=1.76+dfsg-1+b1 python3-cov-core=1.15.0-3 python3-coverage=4.5.2+dfsg.1-4+b2 python3-distutils=3.8.2-2 python3-importlib-metadata=1.5.0-2 python3-lib2to3=3.8.2-2 python3-minimal=3.8.2-3 python3-more-itertools=4.2.0-2 python3-nose2=0.9.1-3 python3-numpy=1:1.18.3-1 python3-packaging=20.3-1.2 python3-parasail=1.2-3 python3-pil=7.0.0-4+b1 python3-pkg-resources=45.2.0-1 python3-pluggy=0.13.0-4 python3-py=1.8.1-2 python3-pyparsing=2.4.6-2 python3-pytest=4.6.9-3 python3-pytest-cov=2.8.1-1 python3-pytest-runner=2.11.1-1.2 python3-reportlab=3.5.34-1 python3-reportlab-accel=3.5.34-1+b1 python3-setuptools=45.2.0-1 python3-six=1.14.0-3 python3-wcwidth=0.1.8+dfsg1-5 python3-wheel=0.34.2-1 python3-yaml=5.3.1-2 python3-zipp=1.0.0-2 python3.8=3.8.2-1+b1 python3.8-minimal=3.8.2-1+b1 readline-common=8.0-4 sed=4.7-1 sensible-utils=0.0.12+nmu1 sysvinit-utils=2.96-3 tar=1.30+dfsg-7 util-linux=2.34-0.1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200424T204736Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d qcat=1.1.0-2 && mkdir -p /build/qcat-XiqpSj && dpkg-source --no-check -x /*.dsc /build/qcat-XiqpSj/qcat-1.1.0 && chown -R builduser:builduser /build/qcat-XiqpSj" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/qcat-XiqpSj/qcat-1.1.0 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1587715275" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/qcat-XiqpSj /tmp/qcat-1.1.0-2vllpvtyx bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200424T204736Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.jMqtg35NAr as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.jMqtg35NAr Reading package lists... Building dependency tree... util-linux is already the newest version (2.34-0.1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200424T204736Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200424T204736Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (937 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4504 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.30-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200424T204736Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.jMqtg35NAr Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20200424T204736Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1125 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.jMqtg35NAr I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d qcat=1.1.0-2 && mkdir -p /build/qcat-XiqpSj && dpkg-source --no-check -x /*.dsc /build/qcat-XiqpSj/qcat-1.1.0 && chown -R builduser:builduser /build/qcat-XiqpSj"' exec /tmp/mmdebstrap.jMqtg35NAr Reading package lists... NOTICE: 'qcat' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/qcat.git Please use: git clone https://salsa.debian.org/med-team/qcat.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 8397 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main qcat 1.1.0-2 (dsc) [2207 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main qcat 1.1.0-2 (tar) [8390 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main qcat 1.1.0-2 (diff) [4436 B] Fetched 8397 kB in 7s (1239 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'qcat_1.1.0-2.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting qcat in /build/qcat-XiqpSj/qcat-1.1.0 dpkg-source: info: unpacking qcat_1.1.0.orig.tar.gz dpkg-source: info: unpacking qcat_1.1.0-2.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/qcat-XiqpSj/qcat-1.1.0 && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1587715275" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.jMqtg35NAr dpkg-buildpackage: info: source package qcat dpkg-buildpackage: info: source version 1.1.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py clean running clean removing '/build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-indep dh binary-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py config running config dh_auto_build -i -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/calibration.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/cli.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/eval_roc.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/__init__.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/scanner_epi2me.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/adapters.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/layout.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/scanner.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/eval.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/scanner_base.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/scanner_simple.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/scanner_dual.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/eval_full.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/utils.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/scanner_guppy.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/config.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat copying qcat/scanner_brill.py -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat creating /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources creating /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/RBK004.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/NBD114_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/NBD104_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/PBC001_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/PBC096_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/NBD104_NBD114_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/VMK001.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/simple_standard.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/DUAL_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/RAB201_5p_a.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/RAB204_RAB214_5p_c.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/NBD104_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/RAB201_5p_c.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/RAB201_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/PBK004_LWB001_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/PBC001_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/RBK001.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/PBK004_LWB001_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/RAB214_5p_c.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/simple_extended.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/RAB204_RAB214_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/NBD114_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/NBD104_NBD114_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/DUAL_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/RAB214_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/RAB204_RAB214_5p_a.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/PBC096_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/RAB214_5p_a.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits copying qcat/resources/kits/RPB004_RLB001.yml -> /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits dh_auto_test -i -O--buildsystem=pybuild I: pybuild pybuild:284: cp -r /build/qcat-XiqpSj/qcat-1.1.0/qcat/test /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat ; I: pybuild base:217: cd /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build; python3.8 -m pytest ============================= test session starts ============================== platform linux -- Python 3.8.2, pytest-4.6.9, py-1.8.1, pluggy-0.13.0 -- /usr/bin/python3.8 cachedir: .pytest_cache rootdir: /build/qcat-XiqpSj/qcat-1.1.0, inifile: pytest.ini plugins: cov-2.8.1 collecting ... collected 14 items qcat/test/test_barcode.py::test_get_placeholder PASSED [ 7%] qcat/test/test_barcode.py::test_barcode PASSED [ 14%] qcat/test/test_barcode.py::test_scanner_find_best_adapter_template PASSED [ 21%] qcat/test/test_barcode.py::test_barcode_rapidkit PASSED [ 28%] qcat/test/test_barcode.py::test_scanner_detect_barcode_generic PASSED [ 35%] qcat/test/test_barcode.py::test_utils PASSED [ 42%] qcat/test/test_barcode.py::test_scanner_ectract_align_sequence PASSED [ 50%] qcat/test/test_barcode.py::test_adapter_layout PASSED [ 57%] qcat/test/test_barcode.py::test_full_run_rad003 PASSED [ 64%] qcat/test/test_barcode.py::test_full_run_nbd103 PASSED [ 71%] qcat/test/test_barcode.py::test_full_run_pbk004 PASSED [ 78%] qcat/test/test_barcode.py::test_full_run_rab204 PASSED [ 85%] qcat/test/test_barcode.py::test_full_run_rbk004 PASSED [ 92%] qcat/test/test_barcode.py::test_trimming PASSED [100%] =============================== warnings summary =============================== /usr/lib/python3/dist-packages/Bio/Alphabet/__init__.py:22 /usr/lib/python3/dist-packages/Bio/Alphabet/__init__.py:22: PendingDeprecationWarning: We intend to remove or replace Bio.Alphabet in 2020, ideally avoid using it explicitly in your code. Please get in touch if you will be adversely affected by this. https://github.com/biopython/biopython/issues/2046 warnings.warn("We intend to remove or replace Bio.Alphabet in 2020, " -- Docs: https://docs.pytest.org/en/latest/warnings.html ----------- coverage: platform linux, python 3.8.2-final-0 ----------- Name Stmts Miss Cover Missing --------------------------------------------------------- qcat/__init__.py 2 0 100% qcat/adapters.py 102 38 63% 19-24, 28-31, 35-40, 44, 55, 81-83, 104-105, 109-118, 130-132, 134-135, 146-149 qcat/calibration.py 0 0 100% qcat/cli.py 283 222 22% 21-32, 36-39, 43-48, 62-197, 218-231, 256-257, 276-278, 286-302, 306, 311-324, 330-357, 362-363, 367-373, 377-383, 387-404, 419-435, 470-563, 567-575, 587-634, 639 qcat/config.py 106 32 70% 29, 58-59, 78-79, 98-99, 118, 137, 156, 177, 200, 209-234, 263-275 qcat/eval.py 118 118 0% 1-183 qcat/eval_full.py 132 132 0% 1-241 qcat/eval_roc.py 50 50 0% 1-105 qcat/layout.py 108 25 77% 34, 38, 56, 65, 99, 114, 129, 141-143, 155-166, 188, 206, 213, 230, 238 qcat/scanner.py 45 21 53% 10-11, 40-45, 55-60, 70-75, 94-98, 111 qcat/scanner_base.py 284 111 61% 8-11, 24-26, 107, 123, 165-188, 212, 248-255, 279-285, 339, 344, 456, 464, 477, 481-519, 529, 590-591, 594-595, 607-611, 614-616, 620-630, 634-642, 646-654, 658-660, 664-678, 682-689, 693-704, 707-712, 717-733 qcat/scanner_brill.py 77 77 0% 1-138 qcat/scanner_dual.py 41 31 24% 15-29, 33, 56-146 qcat/scanner_epi2me.py 42 9 79% 17, 92, 107-125 qcat/scanner_guppy.py 56 32 43% 13, 46-77, 87-111, 118-120, 125-131 qcat/scanner_simple.py 28 17 39% 14-31, 35, 38-41, 68-87 qcat/test/__init__.py 0 0 100% qcat/test/test_barcode.py 272 5 98% 591-597 qcat/utils.py 22 0 100% --------------------------------------------------------- TOTAL 1768 920 48% ==================== 14 passed, 1 warnings in 40.60 seconds ==================== create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp running install running build running build_py running install_lib creating /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr creating /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib creating /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8 creating /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/.coverage -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages creating /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/calibration.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/cli.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/eval_roc.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__init__.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/scanner_epi2me.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/adapters.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/layout.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/scanner.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat creating /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/test/__init__.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/test/test_barcode.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test creating /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test/data copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/test/data/nbd103.fastq -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test/data copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/test/data/nobarcode_1k.fastq -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test/data copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/test/data/pbk004.fastq -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test/data copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/test/data/rab204.fastq -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test/data copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/test/data/barcode_1k.fastq -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test/data copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/test/data/rbk004.fastq -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test/data creating /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/test/__pycache__/__init__.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/test/__pycache__/test_barcode.cpython-38-PYTEST.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/eval.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/scanner_base.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/scanner_simple.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat creating /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources creating /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/RBK004.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/NBD114_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/NBD104_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/PBC001_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/PBC096_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/NBD104_NBD114_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/VMK001.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/simple_standard.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/DUAL_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/RAB201_5p_a.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/RAB204_RAB214_5p_c.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/NBD104_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/RAB201_5p_c.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/RAB201_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/PBK004_LWB001_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/PBC001_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/RBK001.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/PBK004_LWB001_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/RAB214_5p_c.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/simple_extended.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/RAB204_RAB214_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/NBD114_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/NBD104_NBD114_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/DUAL_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/RAB214_3p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/RAB204_RAB214_5p_a.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/PBC096_5p.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/RAB214_5p_a.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/resources/kits/RPB004_RLB001.yml -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/resources/kits copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/scanner_dual.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/eval_full.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/utils.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat creating /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/scanner_epi2me.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/__init__.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/scanner_base.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/scanner_simple.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/scanner_guppy.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/utils.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/scanner_dual.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/scanner.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/adapters.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/calibration.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/layout.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/cli.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/__pycache__/config.cpython-38.pyc -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__pycache__ copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/scanner_guppy.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/config.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat copying /build/qcat-XiqpSj/qcat-1.1.0/.pybuild/cpython3_3.8/build/qcat/scanner_brill.py -> /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/calibration.py to calibration.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/cli.py to cli.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/eval_roc.py to eval_roc.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/__init__.py to __init__.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/scanner_epi2me.py to scanner_epi2me.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/adapters.py to adapters.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/layout.py to layout.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/scanner.py to scanner.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test/__init__.py to __init__.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/test/test_barcode.py to test_barcode.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/eval.py to eval.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/scanner_base.py to scanner_base.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/scanner_simple.py to scanner_simple.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/scanner_dual.py to scanner_dual.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/eval_full.py to eval_full.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/utils.py to utils.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/scanner_guppy.py to scanner_guppy.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/config.py to config.cpython-38.pyc byte-compiling /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat/scanner_brill.py to scanner_brill.cpython-38.pyc running install_egg_info running egg_info creating qcat.egg-info writing qcat.egg-info/PKG-INFO writing dependency_links to qcat.egg-info/dependency_links.txt writing entry points to qcat.egg-info/entry_points.txt writing requirements to qcat.egg-info/requires.txt writing top-level names to qcat.egg-info/top_level.txt writing manifest file 'qcat.egg-info/SOURCES.txt' reading manifest file 'qcat.egg-info/SOURCES.txt' writing manifest file 'qcat.egg-info/SOURCES.txt' Copying qcat.egg-info to /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/lib/python3.8/dist-packages/qcat-1.1.0.egg-info Skipping SOURCES.txt running install_scripts Installing qcat script to /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/bin Installing qcat-eval script to /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/bin Installing qcat-eval-truth script to /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/bin Installing qcat-roc script to /build/qcat-XiqpSj/qcat-1.1.0/debian/tmp/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/qcat-XiqpSj/qcat-1.1.0' dh_install find debian -name .coverage -delete mkdir -p debian/qcat-examples/usr/share/doc/qcat/examples/qcat mv debian/qcat/usr/lib/python3*/dist-packages/qcat/test debian/qcat-examples/usr/share/doc/qcat/examples/qcat find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/qcat-XiqpSj/qcat-1.1.0' dh_installdocs -i -O--buildsystem=pybuild dh_installchangelogs -i -O--buildsystem=pybuild dh_installman -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild dh_installinit -i -O--buildsystem=pybuild dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'qcat-examples' in '../qcat-examples_1.1.0-2_all.deb'. dpkg-deb: building package 'qcat' in '../qcat_1.1.0-2_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../qcat_1.1.0-2_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/qcat-XiqpSj /tmp/qcat-1.1.0-2vllpvtyx I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.jMqtg35NAr... I: success in 417.0447 seconds md5: qcat-examples_1.1.0-2_all.deb: OK md5: qcat_1.1.0-2_all.deb: OK sha1: qcat-examples_1.1.0-2_all.deb: OK sha1: qcat_1.1.0-2_all.deb: OK sha256: qcat-examples_1.1.0-2_all.deb: OK sha256: qcat_1.1.0-2_all.deb: OK Checksums: OK