Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-pyvcf/python-pyvcf_0.6.8+git20170215.476169c-8_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-pyvcf-0.6.8+git20170215.476169c-8xay7yx5k/python-pyvcf_0.6.8+git20170215.476169c-8_all.buildinfo Get source package info: python-pyvcf=0.6.8+git20170215.476169c-8 Source URL: http://snapshot.notset.fr/mr/package/python-pyvcf/0.6.8+git20170215.476169c-8/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.71-2 automake=1:1.16.4-2 autopoint=0.21-4 autotools-dev=20180224.1+nmu1 base-files=12 base-passwd=3.5.52 bash=5.1-3+b2 binutils=2.37-7 binutils-common=2.37-7 binutils-x86-64-linux-gnu=2.37-7 bsdextrautils=2.37.2-3 bsdutils=1:2.37.2-3 build-essential=12.9 bzip2=1.0.8-4 coreutils=8.32-4+b1 cpp=4:11.2.0-2 cpp-11=11.2.0-9 cython3=0.29.21-3+b1 dash=0.5.11+git20210120+802ebd4-1 debconf=1.5.77 debhelper=13.5.2 debianutils=5.5-1 dh-autoreconf=20 dh-python=4.20201102+nmu1 dh-strip-nondeterminism=1.12.0-1 diffutils=1:3.7-5 dpkg=1.20.9 dpkg-dev=1.20.9 dwz=0.14-1 file=1:5.39-3 findutils=4.8.0-1 g++=4:11.2.0-2 g++-11=11.2.0-9 gcc=4:11.2.0-2 gcc-11=11.2.0-9 gcc-11-base=11.2.0-9 gettext=0.21-4 gettext-base=0.21-4 grep=3.7-1 groff-base=1.22.4-7 gzip=1.10-4 hostname=3.23 init-system-helpers=1.60 intltool-debian=0.35.0+20060710.5 libacl1=2.3.1-1 libarchive-zip-perl=1.68-1 libasan6=11.2.0-9 libatomic1=11.2.0-9 libattr1=1:2.5.1-1 libaudit-common=1:3.0.6-1 libaudit1=1:3.0.6-1 libbinutils=2.37-7 libblkid1=2.37.2-3 libbrotli1=1.0.9-2+b2 libbz2-1.0=1.0.8-4 libc-bin=2.32-4 libc-dev-bin=2.32-4 libc6=2.32-4 libc6-dev=2.32-4 libcap-ng0=0.7.9-2.2+b1 libcap2=1:2.44-1 libcc1-0=11.2.0-9 libcom-err2=1.46.4-1 libcrypt-dev=1:4.4.25-2 libcrypt1=1:4.4.25-2 libctf-nobfd0=2.37-7 libctf0=2.37-7 libcurl3-gnutls=7.74.0-1.3+b1 libdb5.3=5.3.28+dfsg1-0.8 libdebconfclient0=0.260 libdebhelper-perl=13.5.2 libdeflate0=1.8-1 libdpkg-perl=1.20.9 libelf1=0.185-2 libexpat1=2.4.1-2+b1 libexpat1-dev=2.4.1-2+b1 libffi8=3.4.2-3 libfile-stripnondeterminism-perl=1.12.0-1 libgcc-11-dev=11.2.0-9 libgcc-s1=11.2.0-9 libgcrypt20=1.9.4-3+b1 libgdbm-compat4=1.21-1 libgdbm6=1.21-1 libgmp10=2:6.2.1+dfsg-2 libgnutls30=3.7.2-2 libgomp1=11.2.0-9 libgpg-error0=1.42-3 libgssapi-krb5-2=1.18.3-7 libhogweed6=3.7.3-1 libhts3=1.13+ds-2 libhtscodecs2=1.1.1-3+b1 libicu67=67.1-7 libidn2-0=2.3.2-2 libisl23=0.24-2 libitm1=11.2.0-9 libjs-jquery=3.5.1+dfsg+~3.5.5-7 libjs-sphinxdoc=4.2.0-4 libjs-underscore=1.9.1~dfsg-4 libk5crypto3=1.18.3-7 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-7 libkrb5support0=1.18.3-7 libldap-2.4-2=2.4.59+dfsg-1 liblsan0=11.2.0-9 liblz4-1=1.9.3-2 liblzma5=5.2.5-2 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.37.2-3 libmpc3=1.2.0-1 libmpdec3=2.5.1-2 libmpfr6=4.1.0-3 libncursesw6=6.2+20210905-1 libnettle8=3.7.3-1 libnghttp2-14=1.43.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.24.0-5 libpam-modules=1.4.0-10 libpam-modules-bin=1.4.0-10 libpam-runtime=1.4.0-10 libpam0g=1.4.0-10 libpcre2-8-0=10.36-2 libpcre3=2:8.39-13 libperl5.32=5.32.1-6 libpipeline1=1.5.3-1 libpsl5=0.21.0-1.2 libpython3-all-dev=3.9.2-3 libpython3-dev=3.9.2-3 libpython3-stdlib=3.9.2-3 libpython3.9=3.9.7-4 libpython3.9-dev=3.9.7-4 libpython3.9-minimal=3.9.7-4 libpython3.9-stdlib=3.9.7-4 libquadmath0=11.2.0-9 libreadline8=8.1-2 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2.1 libsasl2-modules-db=2.1.27+dfsg-2.1 libseccomp2=2.5.2-2 libselinux1=3.1-3 libsigsegv2=2.13-1 libsmartcols1=2.37.2-3 libsqlite3-0=3.36.0-2 libssh2-1=1.10.0-2 libssl1.1=1.1.1l-1 libstdc++-11-dev=11.2.0-9 libstdc++6=11.2.0-9 libsub-override-perl=0.09-2 libsystemd0=249.5-1 libtasn1-6=4.17.0-2 libtinfo6=6.2+20210905-1 libtirpc-common=1.3.2-2 libtirpc-dev=1.3.2-2 libtirpc3=1.3.2-2 libtool=2.4.6-15 libtsan0=11.2.0-9 libubsan1=11.2.0-9 libuchardet0=0.0.7-1 libudev1=249.5-1 libunistring2=0.9.10-6 libuuid1=2.37.2-3 libxml2=2.9.12+dfsg-5 libzstd1=1.4.8+dfsg-3 linux-libc-dev=5.14.9-2 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-5 make=4.3-4.1 man-db=2.9.4-2 mawk=1.3.4.20200120-2 media-types=4.0.0 ncurses-base=6.2+20210905-1 ncurses-bin=6.2+20210905-1 patch=2.7.6-7 perl=5.32.1-6 perl-base=5.32.1-6 perl-modules-5.32=5.32.1-6 po-debconf=1.0.21+nmu1 python3=3.9.2-3 python3-all=3.9.2-3 python3-all-dev=3.9.2-3 python3-attr=20.3.0-1 python3-dev=3.9.2-3 python3-distutils=3.9.7-1 python3-importlib-metadata=4.6.4-1 python3-iniconfig=1.1.1-1 python3-lib2to3=3.9.7-1 python3-minimal=3.9.2-3 python3-more-itertools=4.2.0-3 python3-packaging=21.0-1 python3-pkg-resources=58.2.0-1 python3-pluggy=0.13.0-7 python3-py=1.10.0-1 python3-pyparsing=2.4.7-1 python3-pysam=0.15.4+ds-3+b2 python3-pytest=6.2.5-1 python3-setuptools=58.2.0-1 python3-six=1.16.0-2 python3-toml=0.10.2-1 python3-zipp=1.0.0-3 python3.9=3.9.7-4 python3.9-dev=3.9.7-4 python3.9-minimal=3.9.7-4 readline-common=8.1-2 rpcsvc-proto=1.4.2-4 sed=4.8-1 sensible-utils=0.0.17 sysvinit-utils=3.00-1 tar=1.34+dfsg-1 tzdata=2021c-2 util-linux=2.37.2-3 xz-utils=5.2.5-2 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211014T085745Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-pyvcf=0.6.8+git20170215.476169c-8 && mkdir -p /build/python-pyvcf-Gn5woK && dpkg-source --no-check -x /*.dsc /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c && chown -R builduser:builduser /build/python-pyvcf-Gn5woK" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634282464" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/python-pyvcf-Gn5woK /tmp/python-pyvcf-0.6.8+git20170215.476169c-8xay7yx5k bookworm /dev/null deb http://snapshot.notset.fr/archive/debian/20211014T085745Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: null I: using /tmp/mmdebstrap.79gfaCMTG9 as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.79gfaCMTG9 Reading package lists... Building dependency tree... util-linux is already the newest version (2.37.2-3). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20211014T085745Z unstable/main amd64 libfakeroot amd64 1.26-1 [47.3 kB] Get:2 http://snapshot.notset.fr/archive/debian/20211014T085745Z unstable/main amd64 fakeroot amd64 1.26-1 [87.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1031 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4667 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.26-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.26-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.26-1_amd64.deb ... Unpacking fakeroot (1.26-1) ... Setting up libfakeroot:amd64 (1.26-1) ... Setting up fakeroot (1.26-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.32-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20211017T024714Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20211014T085745Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.79gfaCMTG9 Get:1 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm InRelease [128 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20211014T085745Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main Sources [11.7 MB] Get:4 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main amd64 Packages [11.2 MB] Fetched 23.0 MB in 20s (1173 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.79gfaCMTG9 I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-pyvcf=0.6.8+git20170215.476169c-8 && mkdir -p /build/python-pyvcf-Gn5woK && dpkg-source --no-check -x /*.dsc /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c && chown -R builduser:builduser /build/python-pyvcf-Gn5woK"' exec /tmp/mmdebstrap.79gfaCMTG9 Reading package lists... NOTICE: 'python-pyvcf' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-pyvcf.git Please use: git clone https://salsa.debian.org/med-team/python-pyvcf.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 948 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main python-pyvcf 0.6.8+git20170215.476169c-8 (dsc) [2433 B] Get:2 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main python-pyvcf 0.6.8+git20170215.476169c-8 (tar) [936 kB] Get:3 http://snapshot.notset.fr/archive/debian/20211017T024714Z bookworm/main python-pyvcf 0.6.8+git20170215.476169c-8 (diff) [9988 B] Fetched 948 kB in 1s (1182 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-pyvcf_0.6.8+git20170215.476169c-8.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-pyvcf in /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-setuptools.patch dpkg-source: info: applying 2to3.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634282464" DEB_BUILD_OPTIONS=nocheck dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.79gfaCMTG9 dpkg-buildpackage: info: source package python-pyvcf dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( running clean removing '/build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-indep dh binary-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( running config dh_auto_build -i -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( running build running build_py creating /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf copying vcf/__init__.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf copying vcf/filters.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf copying vcf/model.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf copying vcf/parser.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf copying vcf/sample_filter.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf copying vcf/utils.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf creating /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/__init__.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/prof.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test running egg_info creating PyVCF.egg-info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing requirements to PyVCF.egg-info/requires.txt writing top-level names to PyVCF.egg-info/top_level.txt writing manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf copying vcf/test/1kg.sites.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/FT.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/walk_refcall.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test running build_ext cythoning vcf/cparse.pyx to vcf/cparse.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'vcf.cparse' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/vcf x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c vcf/cparse.c -o build/temp.linux-x86_64-3.9/vcf/cparse.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/vcf/cparse.o -o /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/cparse.cpython-39-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting scripts/vcf_melt -> build/scripts-3.9 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.9 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.9 changing mode of build/scripts-3.9/vcf_melt from 644 to 755 changing mode of build/scripts-3.9/vcf_filter.py from 644 to 755 changing mode of build/scripts-3.9/vcf_sample_filter.py from 644 to 755 dh: command-omitted: The call to "dh_auto_test -i -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'build-lib' will not be supported in future versions. Please use the underscore name 'build_lib' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-layout' will not be supported in future versions. Please use the underscore name 'install_layout' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-scripts' will not be supported in future versions. Please use the underscore name 'install_scripts' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'install-lib' will not be supported in future versions. Please use the underscore name 'install_lib' instead warnings.warn( running install running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing requirements to PyVCF.egg-info/requires.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext skipping 'vcf/cparse.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf creating /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr creating /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib creating /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9 creating /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages creating /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/__init__.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/filters.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/model.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/parser.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/sample_filter.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/utils.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf creating /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/__init__.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/prof.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/test_vcf.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/1kg.sites.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/FT.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/bad-info-character.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/bcftools.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/contig_idonly.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.0.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.1.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/example-4.2.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/freebayes.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/gatk.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/info-type-character.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-140-file1.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-140-file2.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-140-file3.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-16.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-214.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-254.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue_49.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/mixed-filtering.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/parse-meta-line.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/samples-space.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/samtools.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/strelka.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/string_as_flag.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/walk_left.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/walk_refcall.vcf -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/1kg.vcf.gz -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-201.vcf.gz -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/tb.vcf.gz -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/cparse.pyx -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf copying /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.9_vcf/build/vcf/cparse.cpython-39-x86_64-linux-gnu.so -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf byte-compiling /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/filters.py to filters.cpython-39.pyc byte-compiling /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/model.py to model.cpython-39.pyc byte-compiling /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/parser.py to parser.cpython-39.pyc byte-compiling /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/sample_filter.py to sample_filter.cpython-39.pyc byte-compiling /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/utils.py to utils.cpython-39.pyc byte-compiling /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test/prof.py to prof.cpython-39.pyc byte-compiling /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-39.pyc running install_egg_info Copying PyVCF.egg-info to /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.9/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.9/vcf_melt -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.9/vcf_filter.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.9/vcf_sample_filter.py -> /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin changing mode of /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 changing mode of /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755 changing mode of /build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c' dh_install # move testdata to separate dir mkdir -p debian/python-pyvcf-examples/usr/share/doc/python3-vcf mv `find debian/python3-vcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python3-vcf find debian/python3-vcf -type d -name test | xargs rm -rf find debian/python-pyvcf-examples/usr/share/doc/python3-vcf -name "__pycache__" | xargs rm -rf mkdir -p debian/pyvcf/usr mv debian/python3-vcf/usr/bin debian/pyvcf/usr # strip .py extension for py in debian/pyvcf/usr/bin/*.py ; do \ mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \ done make[1]: Leaving directory '/build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c' dh_installdocs -i -O--buildsystem=pybuild dh_installchangelogs -i -O--buildsystem=pybuild dh_installman -i -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c' dh_python3 --verbose D: dh_python3 dh_python3:161: version: 4.20201102+nmu1 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '--verbose'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': True, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': None} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9) D: dh_python3 debhelper:107: skipping package: python-pyvcf-examples D: dh_python3 debhelper:152: source=python-pyvcf, binary packages=['python3-vcf', 'pyvcf'] D: dh_python3 dh_python3:183: processing package python3-vcf... D: dh_python3 fs:49: moving files from debian/python3-vcf/usr/lib/python3.9/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-vcf details = {'requires.txt': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.9')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-vcf D: dh_python3 pydist:142: trying to find dependency for setuptools (python=None) D: dh_python3 depends:275: D={'python3 (>= 3.9~)', 'python3:any', 'python3-pkg-resources', 'python3 (<< 3.10)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:183: processing package pyvcf... D: dh_python3 fs:260: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package pyvcf D: dh_python3 depends:275: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] make[1]: Leaving directory '/build/python-pyvcf-Gn5woK/python-pyvcf-0.6.8+git20170215.476169c' dh_installsystemduser -i -O--buildsystem=pybuild dh_lintian -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'pyvcf' in '../pyvcf_0.6.8+git20170215.476169c-8_all.deb'. dpkg-deb: building package 'python-pyvcf-examples' in '../python-pyvcf-examples_0.6.8+git20170215.476169c-8_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../python-pyvcf_0.6.8+git20170215.476169c-8_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/python-pyvcf-Gn5woK /tmp/python-pyvcf-0.6.8+git20170215.476169c-8xay7yx5k I: cleaning package lists and apt cache... I: removing tempdir /tmp/mmdebstrap.79gfaCMTG9... I: success in 452.4058 seconds md5: python-pyvcf-examples_0.6.8+git20170215.476169c-8_all.deb: OK md5: pyvcf_0.6.8+git20170215.476169c-8_all.deb: OK sha1: python-pyvcf-examples_0.6.8+git20170215.476169c-8_all.deb: OK sha1: pyvcf_0.6.8+git20170215.476169c-8_all.deb: OK sha256: python-pyvcf-examples_0.6.8+git20170215.476169c-8_all.deb: OK sha256: pyvcf_0.6.8+git20170215.476169c-8_all.deb: OK Checksums: OK