Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-pymzml/python-pymzml_2.4.7-3_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-pymzml-2.4.7-3t2wpepfh/python-pymzml_2.4.7-3_all.buildinfo Get source package info: python-pymzml=2.4.7-3 Source URL: http://snapshot.notset.fr/mr/package/python-pymzml/2.4.7-3/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-6 binutils=2.34-8 binutils-common=2.34-8 binutils-x86-64-linux-gnu=2.34-8 bsdmainutils=12.1.2 bsdutils=1:2.35.2-4 build-essential=12.8 bzip2=1.0.8-3 ca-certificates=20200601 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.3.0-14 dash=0.5.10.2-7 debconf=1.5.74 debhelper=13.1 debianutils=4.11 dh-autoreconf=19 dh-python=4.20200315 dh-strip-nondeterminism=1.8.1-1 diffutils=1:3.7-3 docutils-common=0.16+dfsg-2 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-5 file=1:5.38-5 findutils=4.7.0-1 fontconfig-config=2.13.1-4.2 fonts-dejavu-core=2.37-2 fonts-font-awesome=5.0.10+really4.7.0~dfsg-2 fonts-lato=2.0-2 fonts-lmodern=2.004.5-6 g++=4:9.2.1-3.1 g++-9=9.3.0-14 gcc=4:9.2.1-3.1 gcc-10-base=10.1.0-4 gcc-9=9.3.0-14 gcc-9-base=9.3.0-14 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.4-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 latexmk=1:4.69a-0.1 libacl1=2.2.53-8 libapache-pom-java=18-1 libarchive-zip-perl=1.68-1 libasan5=9.3.0-14 libatomic1=10.1.0-4 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libbinutils=2.34-8 libblas3=3.9.0-2 libblkid1=2.35.2-4 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-3 libc-bin=2.30-8 libc-dev-bin=2.30-8 libc6=2.30-8 libc6-dev=2.30-8 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2.2 libcc1-0=10.1.0-4 libcommons-logging-java=1.2-2 libcommons-parent-java=43-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.16-1 libcrypt1=1:4.4.16-1 libctf-nobfd0=2.34-8 libctf0=2.34-8 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.252 libdebhelper-perl=13.1 libdpkg-perl=1.19.7 libelf1=0.176-1.1 libexpat1=2.2.9-1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.8.1-1 libfontbox-java=1:1.8.16-2 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.1-2 libgcc-9-dev=9.3.0-14 libgcc-s1=10.1.0-4 libgcrypt20=1.8.5-5 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgfortran5=10.1.0-4 libglib2.0-0=2.64.3-1 libgmp10=2:6.2.0+dfsg-6 libgomp1=10.1.0-4 libgpg-error0=1.38-1 libgraphite2-3=1.3.14-1 libharfbuzz0b=2.6.7-1 libice6=2:1.0.9-2 libicu67=67.1-2 libisl22=0.22.1-1 libitm1=10.1.0-4 libjs-jquery=3.5.1+dfsg-4 libjs-modernizr=2.6.2+ds1-3 libjs-sphinxdoc=2.4.3-4 libjs-underscore=1.9.1~dfsg-1 libkpathsea6=2020.20200327.54578-4+b1 liblapack3=3.9.0-2 liblsan0=10.1.0-4 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-5 libmagic1=1:5.38-5 libmount1=2.35.2-4 libmpc3=1.1.0-1 libmpdec2=2.4.2-3 libmpfr6=4.0.2-1 libncursesw6=6.2-1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpcre2-8-0=10.34-7 libpcre3=2:8.39-13 libpdfbox-java=1:1.8.16-2 libperl5.30=5.30.3-4 libpipeline1=1.5.2-2 libpixman-1-0=0.36.0-1 libpng16-16=1.6.37-2 libptexenc1=2020.20200327.54578-4+b1 libpython3-stdlib=3.8.2-3 libpython3.8-minimal=3.8.3-1 libpython3.8-stdlib=3.8.3-1 libquadmath0=10.1.0-4 libreadline8=8.0-4 libseccomp2=2.4.3-1+b1 libselinux1=3.0-1+b3 libsigsegv2=2.12-2 libsm6=2:1.2.3-1 libsmartcols1=2.35.2-4 libsqlite3-0=3.32.3-1 libssl1.1=1.1.1g-1 libstdc++-9-dev=9.3.0-14 libstdc++6=10.1.0-4 libsub-override-perl=0.09-2 libsynctex2=2020.20200327.54578-4+b1 libsystemd0=245.6-1 libteckit0=2.5.8+ds2-5 libtexlua53=2020.20200327.54578-4+b1 libtexluajit2=2020.20200327.54578-4+b1 libtinfo6=6.2-1 libtool=2.4.6-14 libtsan0=10.1.0-4 libubsan1=10.1.0-4 libuchardet0=0.0.7-1 libudev1=245.6-1 libunistring2=0.9.10-4 libuuid1=2.35.2-4 libx11-6=2:1.6.9-2+b1 libx11-data=2:1.6.9-2 libxau6=1:1.0.8-1+b2 libxaw7=2:1.0.13-1+b2 libxcb-render0=1.14-2 libxcb-shm0=1.14-2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxi6=2:1.7.10-1 libxml2=2.9.10+dfsg-5+b1 libxmu6=2:1.1.2-2+b3 libxpm4=1:3.5.12-1 libxrender1=1:0.9.10-1 libxt6=1:1.1.5-1+b3 libzzip-0-13=0.13.62-3.2 linux-libc-dev=5.6.14-2 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.3-3 man-db=2.9.2-1 mawk=1.3.4.20200120-2 mime-support=3.64 ncurses-base=6.2-1 ncurses-bin=6.2-1 node-jquery=3.5.1+dfsg-4 openssl=1.1.1g-1 patch=2.7.6-6 perl=5.30.3-4 perl-base=5.30.3-4 perl-modules-5.30=5.30.3-4 po-debconf=1.0.21 preview-latex-style=11.91-2 python-babel-localedata=2.8.0+dfsg.1-3 python3=3.8.2-3 python3-alabaster=0.7.8-1.1 python3-all=3.8.2-3 python3-babel=2.8.0+dfsg.1-3 python3-certifi=2020.4.5.1-1 python3-chardet=3.0.4-7 python3-distutils=3.8.3-2 python3-docutils=0.16+dfsg-2 python3-idna=2.9-1 python3-imagesize=1.2.0-2 python3-jinja2=2.11.2-1 python3-lib2to3=3.8.3-2 python3-markupsafe=1.1.1-1+b1 python3-minimal=3.8.2-3 python3-numpy=1:1.19.0-1 python3-packaging=20.3-1.2 python3-pkg-resources=46.1.3-1 python3-pygments=2.3.1+dfsg-3 python3-pyparsing=2.4.7-1 python3-regex=0.1.20190819-2+b1 python3-requests=2.23.0+dfsg-2 python3-roman=2.0.0-4 python3-setuptools=46.1.3-1 python3-six=1.15.0-1 python3-sphinx=2.4.3-4 python3-sphinx-rtd-theme=0.4.3+dfsg-3 python3-tz=2020.1-1 python3-urllib3=1.25.9-1 python3.8=3.8.3-1 python3.8-minimal=3.8.3-1 readline-common=8.0-4 sed=4.7-1 sensible-utils=0.0.12+nmu1 sgml-base=1.30 sphinx-common=2.4.3-4 sphinx-rtd-theme-common=0.4.3+dfsg-3 sysvinit-utils=2.96-3 t1utils=1.41-4 tar=1.30+dfsg-7 tex-common=6.15 texlive-base=2020.20200522-1 texlive-binaries=2020.20200327.54578-4+b1 texlive-fonts-recommended=2020.20200522-1 texlive-latex-base=2020.20200522-1 texlive-latex-extra=2020.20200522-1 texlive-latex-recommended=2020.20200522-1 texlive-pictures=2020.20200522-1 tzdata=2020a-1 ucf=3.0043 util-linux=2.35.2-4 x11-common=1:7.7+20 xdg-utils=1.1.3-2 xml-core=0.18+nmu1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200622T144846Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-pymzml=2.4.7-3 && mkdir -p /build/python-pymzml-w2xNyi && dpkg-source --no-check -x /*.dsc /build/python-pymzml-w2xNyi/python-pymzml-2.4.7 && chown -R builduser:builduser /build/python-pymzml-w2xNyi" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-pymzml-w2xNyi/python-pymzml-2.4.7 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1592728582" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/python-pymzml-w2xNyi /tmp/python-pymzml-2.4.7-3t2wpepfh bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200622T144846Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.QC1R6NfSGd as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.QC1R6NfSGd Reading package lists... Building dependency tree... util-linux is already the newest version (2.35.2-4). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200622T144846Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200622T144846Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (1078 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4481 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.30-8) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200622T144846Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.QC1R6NfSGd Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20200622T144846Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1110 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.QC1R6NfSGd I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-pymzml=2.4.7-3 && mkdir -p /build/python-pymzml-w2xNyi && dpkg-source --no-check -x /*.dsc /build/python-pymzml-w2xNyi/python-pymzml-2.4.7 && chown -R builduser:builduser /build/python-pymzml-w2xNyi"' exec /tmp/mmdebstrap.QC1R6NfSGd Reading package lists... NOTICE: 'python-pymzml' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/python-pymzml.git Please use: git clone https://salsa.debian.org/debichem-team/python-pymzml.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 25.1 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-pymzml 2.4.7-3 (dsc) [2328 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-pymzml 2.4.7-3 (tar) [25.0 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-pymzml 2.4.7-3 (diff) [6584 B] Fetched 25.1 MB in 21s (1218 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-pymzml_2.4.7-3.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-pymzml in /build/python-pymzml-w2xNyi/python-pymzml-2.4.7 dpkg-source: info: unpacking python-pymzml_2.4.7.orig.tar.gz dpkg-source: info: unpacking python-pymzml_2.4.7-3.debian.tar.xz I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-pymzml-w2xNyi/python-pymzml-2.4.7 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1592728582" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.QC1R6NfSGd dpkg-buildpackage: info: source package python-pymzml dpkg-buildpackage: info: source version 2.4.7-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.8 I: pybuild base:217: python3.8 setup.py clean running clean removing '/build/python-pymzml-w2xNyi/python-pymzml-2.4.7/.pybuild/cpython3_3.8_pymzml/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/python-pymzml-w2xNyi/python-pymzml-2.4.7' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-pymzml.substvars debian/python-pymzml-doc.substvars debian/files rm -fr -- debian/python3-pymzml/ debian/tmp/ debian/python-pymzml-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -rfv debian/source/include-binaries rm -rfv "debian/doc" make[1]: Leaving directory '/build/python-pymzml-w2xNyi/python-pymzml-2.4.7' debian/rules build-indep dh build-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.8 I: pybuild base:217: python3.8 setup.py config running config debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/python-pymzml-w2xNyi/python-pymzml-2.4.7' cp -rpf docs docs-bkp && rm -rf docs/build cd docs && make html make[2]: Entering directory '/build/python-pymzml-w2xNyi/python-pymzml-2.4.7/docs' /usr/bin/env python3 parse_example_scripts.py;sphinx-build -b html -d build/doctrees source build/html Formatting example scripts into rst files for the docs ../example_scripts/*.py Reading: ../example_scripts/gzip_mzml.py Reading: ../example_scripts/plot_spectrum_with_annotation.py Reading: ../example_scripts/get_example_file.py Reading: ../example_scripts/simple_parser.py Reading: ../example_scripts/deprecation_check.py Reading: ../example_scripts/plot_spectrum.py Reading: ../example_scripts/polarity.py Reading: ../example_scripts/_playground2.py Reading: ../example_scripts/simple_parser_v2.py Reading: ../example_scripts/access_run_info.py Reading: ../example_scripts/get_precursors.py Reading: ../example_scripts/has_peak.py Reading: ../example_scripts/extract_ion_chromatogram.py Reading: ../example_scripts/multi_threading_file_compression.py Reading: ../example_scripts/download_obo_database.py Reading: ../example_scripts/compare_spectra.py Reading: ../example_scripts/extreme_values.py Reading: ../example_scripts/plot_chromatogram.py Reading: ../example_scripts/tic_calc.py Reading: ../example_scripts/queryOBO.py Reading: ../example_scripts/highest_peaks.py Running Sphinx v2.4.3 making output directory... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 16 source files that are out of date updating environment: [new config] 16 added, 0 changed, 0 removed reading sources... [ 6%] custom_fileclass reading sources... [ 12%] example_scripts reading sources... [ 18%] examples reading sources... [ 25%] file_handlers reading sources... [ 31%] index reading sources... [ 37%] index_gzip reading sources... [ 43%] intro reading sources... [ 50%] modules reading sources... [ 56%] obo reading sources... [ 62%] plot reading sources... [ 68%] pymzml_regex_patterns reading sources... [ 75%] pymzml_run reading sources... [ 81%] pymzml_spec reading sources... [ 87%] pymzml_utils reading sources... [ 93%] quick_start reading sources... [100%] suppl_material /build/python-pymzml-w2xNyi/python-pymzml-2.4.7/pymzml/spec.py:1041: SyntaxWarning: "is" with a literal. Did you mean "=="? if peak_type is "raw": /build/python-pymzml-w2xNyi/python-pymzml-2.4.7/pymzml/spec.py:1043: SyntaxWarning: "is" with a literal. Did you mean "=="? elif peak_type is "centroided": /build/python-pymzml-w2xNyi/python-pymzml-2.4.7/pymzml/spec.py:1045: SyntaxWarning: "is" with a literal. Did you mean "=="? elif peak_type is "reprofiled": /build/python-pymzml-w2xNyi/python-pymzml-2.4.7/pymzml/spec.py:1047: SyntaxWarning: "is" with a literal. Did you mean "=="? elif peak_type is "deconvoluted": /build/python-pymzml-w2xNyi/python-pymzml-2.4.7/pymzml/spec.py:1056: SyntaxWarning: "is" with a literal. Did you mean "=="? if peak_type is "reprofiled": ../README.rst:4: WARNING: Duplicate explicit target name: "here". /build/python-pymzml-w2xNyi/python-pymzml-2.4.7/pymzml/plot.py:docstring of pymzml.plot.Factory.add:6: WARNING: Unexpected indentation. /build/python-pymzml-w2xNyi/python-pymzml-2.4.7/pymzml/plot.py:docstring of pymzml.plot.Factory.add:15: WARNING: Unexpected indentation. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 6%] custom_fileclass writing output... [ 12%] example_scripts writing output... [ 18%] examples writing output... [ 25%] file_handlers writing output... [ 31%] index writing output... [ 37%] index_gzip writing output... [ 43%] intro writing output... [ 50%] modules writing output... [ 56%] obo writing output... [ 62%] plot writing output... [ 68%] pymzml_regex_patterns writing output... [ 75%] pymzml_run writing output... [ 81%] pymzml_spec writing output... [ 87%] pymzml_utils writing output... [ 93%] quick_start writing output... [100%] suppl_material /build/python-pymzml-w2xNyi/python-pymzml-2.4.7/pymzml/file_interface.py:docstring of pymzml.file_interface.FileInterface.read:: WARNING: more than one target found for cross-reference 'read': pymzml.file_interface.FileInterface.read, pymzml.file_classes.standardMzml.StandardMzml.read, pymzml.file_classes.standardGzip.StandardGzip.read, pymzml.file_classes.indexedGzip.IndexedGzip.read, pymzml.utils.GSGR.GSGR.read WARNING: convert command 'convert' cannot be run.check the image_converter setting generating indices... genindex py-modindexdone highlighting module code... [ 4%] access_run_info highlighting module code... [ 8%] compare_spectra highlighting module code... [ 12%] deprecation_check highlighting module code... [ 16%] extract_ion_chromatogram highlighting module code... [ 20%] get_precursors highlighting module code... [ 24%] gzip_mzml highlighting module code... [ 28%] has_peak highlighting module code... [ 32%] highest_peaks highlighting module code... [ 36%] multi_threading_file_compression highlighting module code... [ 40%] plot_chromatogram highlighting module code... [ 44%] plot_spectrum highlighting module code... [ 48%] plot_spectrum_with_annotation highlighting module code... [ 52%] polarity highlighting module code... [ 56%] pymzml.file_classes.indexedGzip highlighting module code... [ 60%] pymzml.file_classes.standardGzip highlighting module code... [ 64%] pymzml.file_classes.standardMzml highlighting module code... [ 68%] pymzml.file_interface highlighting module code... [ 72%] pymzml.plot highlighting module code... [ 76%] pymzml.run highlighting module code... [ 80%] pymzml.spec highlighting module code... [ 84%] pymzml.utils.GSGR highlighting module code... [ 88%] pymzml.utils.GSGW highlighting module code... [ 92%] queryOBO highlighting module code... [ 96%] simple_parser highlighting module code... [100%] simple_parser_v2 writing additional pages... searchdone copying static files... ... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 5 warnings. The HTML pages are in build/html. /usr/lib/python3/dist-packages/sphinx_rtd_theme/search.html:21: RemovedInSphinx30Warning: To modify script_files in the theme is deprecated. Please insert a