Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-pybedtools/python-pybedtools_0.8.0-5+b2_amd64.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-pybedtools-0.8.0-5+b2mhd1ozxj/python-pybedtools_0.8.0-5+b2_amd64.buildinfo Get source package info: python-pybedtools=0.8.0-5 Source URL: http://snapshot.notset.fr/mr/package/python-pybedtools/0.8.0-5/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.3-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.48 bash=5.1~rc3-1 bedtools=2.29.2+dfsg-3 binutils=2.35.1-4 binutils-common=2.35.1-4 binutils-x86-64-linux-gnu=2.35.1-4 blt=2.5.3+dfsg-4+b1 bsdextrautils=2.36.1-2 bsdutils=1:2.36.1-2 build-essential=12.8 bzip2=1.0.8-4 ca-certificates=20200601 coreutils=8.32-4+b1 cpp=4:10.2.0-1 cpp-10=10.2.0-23 cython3=0.29.21-3 dash=0.5.11+git20200708+dd9ef66-2 debconf=1.5.74 debhelper=13.3 debianutils=4.11.2 dh-autoreconf=19 dh-python=4.20201102 dh-strip-nondeterminism=1.9.0-1 diffutils=1:3.7-3 docutils-common=0.16+dfsg-3 dpkg=1.20.5 dpkg-dev=1.20.5 dwz=0.13+20201015-2 file=1:5.39-3 findutils=4.7.0+git20201010-2 fontconfig=2.13.1-4.2 fontconfig-config=2.13.1-4.2 fonts-lyx=2.3.6-1 g++=4:10.2.0-1 g++-10=10.2.0-23 gcc=4:10.2.0-1 gcc-10=10.2.0-23 gcc-10-base=10.2.0-23 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.6-1 groff-base=1.22.4-5 gzip=1.10-2 hostname=3.23 init-system-helpers=1.59 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libarchive-zip-perl=1.68-1 libasan6=10.2.0-23 libatomic1=10.2.0-23 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3.1 libaudit1=1:2.8.5-3.1 libbinutils=2.35.1-4 libblas3=3.9.0-3 libblkid1=2.36.1-2 libbrotli1=1.0.9-2+b1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-4 libc-bin=2.31-5 libc-dev-bin=2.31-5 libc6=2.31-5 libc6-dev=2.31-5 libcairo2=1.16.0-4 libcap-ng0=0.7.9-2.2+b1 libcc1-0=10.2.0-23 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.17-1 libcrypt1=1:4.4.17-1 libctf-nobfd0=2.35.1-4 libctf0=2.35.1-4 libcurl3-gnutls=7.72.0-1 libcurl4=7.72.0-1 libdatrie1=0.2.12-3 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.255 libdebhelper-perl=13.3 libdeflate0=1.6-1 libdpkg-perl=1.20.5 libelf1=0.182-1 libexpat1=2.2.10-1 libexpat1-dev=2.2.10-1 libffi7=3.3-5 libfile-stripnondeterminism-perl=1.9.0-1 libfontconfig1=2.13.1-4.2 libfreetype6=2.10.2+dfsg-4 libfribidi0=1.0.8-2 libgcc-10-dev=10.2.0-23 libgcc-s1=10.2.0-23 libgcrypt20=1.8.7-2 libgdbm-compat4=1.18.1-5.1 libgdbm6=1.18.1-5.1 libgfortran5=10.2.0-23 libglib2.0-0=2.66.3-2 libgmp10=2:6.2.1+dfsg-1 libgnutls30=3.6.15-4 libgomp1=10.2.0-23 libgpg-error0=1.38-2 libgraphite2-3=1.3.14-1 libgssapi-krb5-2=1.18.3-4 libharfbuzz0b=2.6.7-1 libhogweed6=3.6-2 libhts3=1.11-2 libice6=2:1.0.10-1 libicu67=67.1-4 libidn2-0=2.3.0-4 libimagequant0=2.12.2-1.1 libisl23=0.23-1 libitm1=10.2.0-23 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:2.0.5-1.1 libjs-jquery=3.5.1+dfsg+~3.5.4-3 libjs-jquery-ui=1.12.1+dfsg-7 libjs-sphinxdoc=3.3.1-1 libjs-underscore=1.9.1~dfsg-1 libk5crypto3=1.18.3-4 libkeyutils1=1.6.1-2 libkrb5-3=1.18.3-4 libkrb5support0=1.18.3-4 liblapack3=3.9.0-3 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.56+dfsg-1 liblsan0=10.2.0-23 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.39-3 libmagic1=1:5.39-3 libmount1=2.36.1-2 libmpc3=1.2.0-1 libmpfr6=4.1.0-3 libncursesw6=6.2+20201114-1 libnettle8=3.6-2 libnghttp2-14=1.42.0-1 libnsl-dev=1.3.0-2 libnsl2=1.3.0-2 libp11-kit0=0.23.21-2 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpango-1.0-0=1.46.2-3 libpangocairo-1.0-0=1.46.2-3 libpangoft2-1.0-0=1.46.2-3 libpaper-utils=1.1.28+b1 libpaper1=1.1.28+b1 libpcre2-8-0=10.35-2 libpcre3=2:8.39-13 libperl5.32=5.32.0-5 libpipeline1=1.5.3-1 libpixman-1-0=0.40.0-1 libpng16-16=1.6.37-3 libpsl5=0.21.0-1.1 libpython3-all-dev=3.9.0-4 libpython3-dev=3.9.0-4 libpython3-stdlib=3.9.0-4 libpython3.8-minimal=3.8.6-1 libpython3.8-stdlib=3.8.6-1 libpython3.9=3.9.1~rc1-2 libpython3.9-dev=3.9.1~rc1-2 libpython3.9-minimal=3.9.1~rc1-2 libpython3.9-stdlib=3.9.1~rc1-2 libquadmath0=10.2.0-23 libreadline8=8.1~rc3-1 librtmp1=2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.5.0-3 libselinux1=3.1-2+b1 libsigsegv2=2.12-2 libsm6=2:1.2.3-1 libsmartcols1=2.36.1-2 libsqlite3-0=3.34.0-1 libssh2-1=1.9.0-1 libssl1.1=1.1.1h-1 libstdc++-10-dev=10.2.0-23 libstdc++6=10.2.0-23 libsub-override-perl=0.09-2 libsystemd0=247.1-3 libtasn1-6=4.16.0-2 libtcl8.6=8.6.10+dfsg-1 libthai-data=0.1.28-3 libthai0=0.1.28-3 libtiff5=4.1.0+git191117-2 libtinfo6=6.2+20201114-1 libtirpc-common=1.2.6-3 libtirpc-dev=1.2.6-3 libtirpc3=1.2.6-3 libtk8.6=8.6.10-1 libtool=2.4.6-14 libtsan0=10.2.0-23 libubsan1=10.2.0-23 libuchardet0=0.0.7-1 libudev1=247.1-3 libunistring2=0.9.10-4 libuuid1=2.36.1-2 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libx11-6=2:1.6.12-1 libx11-data=2:1.6.12-1 libxau6=1:1.0.8-1+b2 libxcb-render0=1.14-2 libxcb-shm0=1.14-2 libxcb1=1.14-2 libxdmcp6=1:1.1.2-3 libxext6=2:1.3.3-1+b2 libxft2=2.3.2-2 libxml2=2.9.10+dfsg-6.3 libxrender1=1:0.9.10-1 libxss1=1:1.2.3-1 libxt6=1:1.2.0-1 libyaml-0-2=0.2.2-1 libzstd1=1.4.5+dfsg-4 linux-libc-dev=5.9.11-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 mailcap=3.67 make=4.3-4 man-db=2.9.3-2 mawk=1.3.4.20200120-2 media-types=1.0.1 mime-support=3.66 ncurses-base=6.2+20201114-1 ncurses-bin=6.2+20201114-1 node-jquery=3.5.1+dfsg+~3.5.4-3 openssl=1.1.1h-1 patch=2.7.6-6 perl=5.32.0-5 perl-base=5.32.0-5 perl-modules-5.32=5.32.0-5 po-debconf=1.0.21 python-babel-localedata=2.8.0+dfsg.1-4 python-matplotlib-data=3.3.2-2 python3=3.9.0-4 python3-alabaster=0.7.8-1.1 python3-all=3.9.0-4 python3-all-dev=3.9.0-4 python3-atomicwrites=1.4.0-1 python3-attr=20.3.0-1 python3-babel=2.8.0+dfsg.1-4 python3-certifi=2020.6.20-1 python3-chardet=3.0.4-7 python3-cycler=0.10.0-3 python3-dateutil=2.8.1-4 python3-dev=3.9.0-4 python3-distutils=3.8.6-1 python3-docutils=0.16+dfsg-3 python3-idna=2.10-1 python3-imagesize=1.2.0-2 python3-importlib-metadata=1.6.0-2 python3-jinja2=2.11.2-1 python3-kiwisolver=1.3.1-1 python3-lib2to3=3.8.6-1 python3-markupsafe=1.1.1-1+b2 python3-matplotlib=3.3.2-2 python3-minimal=3.9.0-4 python3-more-itertools=4.2.0-3 python3-nose=1.3.7-7 python3-numpy=1:1.19.4-1 python3-numpydoc=1.1.0-3 python3-packaging=20.4-1 python3-pandas=1.1.4+dfsg-1 python3-pandas-lib=1.1.4+dfsg-1 python3-pil=8.0.1-1 python3-pkg-resources=50.3.0-1 python3-pluggy=0.13.0-5 python3-psutil=5.7.3-1 python3-py=1.9.0-2 python3-pygments=2.7.1+dfsg-1 python3-pyparsing=2.4.7-1 python3-pysam=0.15.4+ds-3+b1 python3-pytest=4.6.11-1 python3-requests=2.24.0+dfsg-1 python3-roman=2.0.0-5 python3-setuptools=50.3.0-1 python3-six=1.15.0-2 python3-snowballstemmer=2.0.0-2 python3-sphinx=3.3.1-1 python3-tk=3.8.6-1 python3-tz=2020.4-2 python3-urllib3=1.25.11-1 python3-wcwidth=0.1.9+dfsg1-2 python3-yaml=5.3.1-3 python3-zipp=1.0.0-3 python3.8=3.8.6-1 python3.8-minimal=3.8.6-1 python3.9=3.9.1~rc1-2 python3.9-dev=3.9.1~rc1-2 python3.9-minimal=3.9.1~rc1-2 r-base-core=4.0.3-1 readline-common=8.1~rc3-1 sed=4.7-1 sensible-utils=0.0.12+nmu1 sgml-base=1.30 sphinx-common=3.3.1-1 sysvinit-utils=2.96-5 tar=1.32+dfsg-1 tk8.6-blt2.5=2.5.3+dfsg-4+b1 ttf-bitstream-vera=1.10-8 tzdata=2020d-1 ucf=3.0043 unzip=6.0-25 util-linux=2.36.1-2 x11-common=1:7.7+21 xdg-utils=1.1.3-2 xml-core=0.18+nmu1 xz-utils=5.2.4-1+b1 zip=3.0-11+b1 zlib1g=1:1.2.11.dfsg-2 zlib1g-dev=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201207T085039Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-pybedtools=0.8.0-5 && mkdir -p /build/python-pybedtools-ja5vbp && dpkg-source --no-check -x /*.dsc /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0 && cd /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0 && { printf '%s' 'python-pybedtools (0.8.0-5+b2) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.9 only -- amd64 / i386 Build Daemon (x86-ubc-01) Mon, 07 Dec 2020 11:30:43 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/python-pybedtools-ja5vbp" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607340643" dpkg-buildpackage -uc -a amd64 --build=any" --customize-hook=sync-out /build/python-pybedtools-ja5vbp /tmp/python-pybedtools-0.8.0-5+b2mhd1ozxj bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20201207T085039Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.m1YDMZR8VK as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.m1YDMZR8VK Reading package lists... Building dependency tree... util-linux is already the newest version (2.36.1-2). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 134 kB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20201207T085039Z unstable/main amd64 libfakeroot amd64 1.25.3-1.1 [47.0 kB] Get:2 http://snapshot.notset.fr/archive/debian/20201207T085039Z unstable/main amd64 fakeroot amd64 1.25.3-1.1 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 134 kB in 0s (1116 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4614 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.25.3-1.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.25.3-1.1_amd64.deb ... Unpacking fakeroot (1.25.3-1.1) ... Setting up libfakeroot:amd64 (1.25.3-1.1) ... Setting up fakeroot (1.25.3-1.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.31-5) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20201207T085039Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.m1YDMZR8VK Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Hit:2 http://snapshot.notset.fr/archive/debian/20201207T085039Z unstable InRelease Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Fetched 22.6 MB in 20s (1155 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.m1YDMZR8VK I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-pybedtools=0.8.0-5 && mkdir -p /build/python-pybedtools-ja5vbp && dpkg-source --no-check -x /*.dsc /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0 && cd /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0 && { printf '%s' 'python-pybedtools (0.8.0-5+b2) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for amd64; no source changes. * Python 3.9 only -- amd64 / i386 Build Daemon (x86-ubc-01) Mon, 07 Dec 2020 11:30:43 +0000 '; cat debian/changelog; } > debian/changelog.debrebuild && mv debian/changelog.debrebuild debian/changelog && chown -R builduser:builduser /build/python-pybedtools-ja5vbp"' exec /tmp/mmdebstrap.m1YDMZR8VK Reading package lists... NOTICE: 'python-pybedtools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-pybedtools.git Please use: git clone https://salsa.debian.org/med-team/python-pybedtools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.5 MB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-pybedtools 0.8.0-5 (dsc) [2531 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-pybedtools 0.8.0-5 (tar) [12.4 MB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-pybedtools 0.8.0-5 (diff) [31.6 kB] Fetched 12.5 MB in 10s (1259 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-pybedtools_0.8.0-5.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-pybedtools in /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0 dpkg-source: info: unpacking python-pybedtools_0.8.0.orig.tar.gz dpkg-source: info: unpacking python-pybedtools_0.8.0-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying define_filenotfounderror_python2.patch dpkg-source: info: applying remove_badges_from_documentation.patch dpkg-source: info: applying parseDebianVersions.patch dpkg-source: info: applying add_missing_shebang.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0 && env DEB_BUILD_OPTIONS="parallel=4" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607340643" dpkg-buildpackage -uc -a amd64 --build=any"' exec /tmp/mmdebstrap.m1YDMZR8VK dpkg-buildpackage: info: source package python-pybedtools dpkg-buildpackage: info: source version 0.8.0-5+b2 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by amd64 / i386 Build Daemon (x86-ubc-01) dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0' /bin/rm -rf fakehome .eggs .pybuild /bin/rm -rf debian/python3-pybedtools debian/files /bin/rm -rf pybedtools.egg-info /bin/rm -rf pybedtools/scripts/__pycache__/ /bin/rm -rf pybedtools/contrib/__pycache__/ /bin/rm -rf pybedtools/__pycache__/ find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm rm -rf build /bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm # dh_auto_clean make[1]: Leaving directory '/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0' python3 setup.py cythonize running cythonize /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/pybedtools/cbedtools.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/pybedtools/featurefuncs.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling pybedtools/cbedtools.pyx because it changed. Compiling pybedtools/featurefuncs.pyx because it changed. [1/2] Cythonizing pybedtools/cbedtools.pyx [2/2] Cythonizing pybedtools/featurefuncs.pyx dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/genome_registry.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/__init__.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/stats.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/filenames.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/__main__.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/settings.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/bedtool.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/helpers.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/paths.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/version.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/logger.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/parallel.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_helpers.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/regression_tests.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/__init__.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/tfuncs.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_scripts.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_gzip_support.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_issues.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_len_leak.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_contrib.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test1.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_cbedtools.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_iter.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/long_range_interaction.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/__init__.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/plotting.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigwig.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigbed.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/venn_maker.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/intersection_matrix.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/venn_mpl.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/py_ms_example.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/__init__.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/venn_gchart.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/peak_pie.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/annotate.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/intron_exon_reads.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/intersection_matrix.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/__init__.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data running egg_info creating pybedtools.egg-info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt writing manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' copying pybedtools/cbedtools.cpp -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/featurefuncs.cpp -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.cpp -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.h -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.cpp -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.h -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.cpp -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.h -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/lineFileUtilities.h -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/test/data/c.gff -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/b.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.links.html -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_tsses.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe2.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/y.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.b.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_bedpe.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-problem.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/mm9.bed12 -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff.gz -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/multibamcov_test.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-base.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.fastq -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/exons.gff -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.vcf -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg19.gff -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/m1.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/v.vcf -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test2.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/democonfig.yaml -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/snps.bed.gz -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.othersort.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam.bai -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/1000genomes-example.vcf -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/164.gtf -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test1.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue_121.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/reads.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/d.gff -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam.bai -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/expand_test.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_peaks.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa.fai -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.igv_script -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam.bai -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.c.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/featurefuncs.pyx -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/_Window.pyx -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/cbedtools.pyx -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/cbedtools.pxd -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/test/gchart-expected.png -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/mpl-expected.png -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/prevent_open_file_regression -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_cases.yaml -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge215.yaml -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge227.yaml -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle215.yaml -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle227.yaml -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/scripts/pybedtools -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/examples copying pybedtools/scripts/examples/pbt_plotting_example.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/examples running build_ext building 'pybedtools.cbedtools' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/pybedtools creating build/temp.linux-x86_64-3.9/pybedtools/include x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/cbedtools.cpp -o build/temp.linux-x86_64-3.9/pybedtools/cbedtools.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-x86_64-3.9/pybedtools/include/bedFile.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-x86_64-3.9/pybedtools/include/fileType.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-x86_64-3.9/pybedtools/include/gzstream.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pybedtools/cbedtools.o build/temp.linux-x86_64-3.9/pybedtools/include/bedFile.o build/temp.linux-x86_64-3.9/pybedtools/include/fileType.o build/temp.linux-x86_64-3.9/pybedtools/include/gzstream.o -lstdc++ -lz -o /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.cpython-39-x86_64-linux-gnu.so building 'pybedtools.featurefuncs' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/featurefuncs.cpp -o build/temp.linux-x86_64-3.9/pybedtools/featurefuncs.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-x86_64-3.9/pybedtools/include/bedFile.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-x86_64-3.9/pybedtools/include/fileType.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-x86_64-3.9/pybedtools/include/gzstream.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pybedtools/featurefuncs.o build/temp.linux-x86_64-3.9/pybedtools/include/bedFile.o build/temp.linux-x86_64-3.9/pybedtools/include/fileType.o build/temp.linux-x86_64-3.9/pybedtools/include/gzstream.o -lstdc++ -lz -o /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/featurefuncs.cpython-39-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting pybedtools/scripts/venn_gchart.py -> build/scripts-3.9 copying and adjusting pybedtools/scripts/venn_mpl.py -> build/scripts-3.9 copying and adjusting pybedtools/scripts/annotate.py -> build/scripts-3.9 copying and adjusting pybedtools/scripts/peak_pie.py -> build/scripts-3.9 copying and adjusting pybedtools/scripts/intersection_matrix.py -> build/scripts-3.9 copying and adjusting pybedtools/scripts/intron_exon_reads.py -> build/scripts-3.9 copying and adjusting pybedtools/scripts/examples/pbt_plotting_example.py -> build/scripts-3.9 copying pybedtools/scripts/pybedtools -> build/scripts-3.9 changing mode of build/scripts-3.9/venn_gchart.py from 644 to 755 changing mode of build/scripts-3.9/venn_mpl.py from 644 to 755 changing mode of build/scripts-3.9/annotate.py from 644 to 755 changing mode of build/scripts-3.9/peak_pie.py from 644 to 755 changing mode of build/scripts-3.9/intersection_matrix.py from 644 to 755 changing mode of build/scripts-3.9/intron_exon_reads.py from 644 to 755 changing mode of build/scripts-3.9/pbt_plotting_example.py from 644 to 755 changing mode of build/scripts-3.9/pybedtools from 644 to 755 python3 setup.py develop --user running develop running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext building 'pybedtools.cbedtools' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/cbedtools.cpp -o build/temp.linux-x86_64-3.9/pybedtools/cbedtools.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-x86_64-3.9/pybedtools/include/bedFile.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-x86_64-3.9/pybedtools/include/fileType.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-x86_64-3.9/pybedtools/include/gzstream.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pybedtools/cbedtools.o build/temp.linux-x86_64-3.9/pybedtools/include/bedFile.o build/temp.linux-x86_64-3.9/pybedtools/include/fileType.o build/temp.linux-x86_64-3.9/pybedtools/include/gzstream.o -lstdc++ -lz -o /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/pybedtools/cbedtools.cpython-39-x86_64-linux-gnu.so building 'pybedtools.featurefuncs' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/featurefuncs.cpp -o build/temp.linux-x86_64-3.9/pybedtools/featurefuncs.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-x86_64-3.9/pybedtools/include/bedFile.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-x86_64-3.9/pybedtools/include/fileType.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-x86_64-3.9/pybedtools/include/gzstream.o x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/pybedtools/featurefuncs.o build/temp.linux-x86_64-3.9/pybedtools/include/bedFile.o build/temp.linux-x86_64-3.9/pybedtools/include/fileType.o build/temp.linux-x86_64-3.9/pybedtools/include/gzstream.o -lstdc++ -lz -o /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/pybedtools/featurefuncs.cpython-39-x86_64-linux-gnu.so Creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/fakehome/.local/lib/python3.9/site-packages/pybedtools.egg-link (link to .) Adding pybedtools 0.8.0 to easy-install.pth file Installing venn_gchart.py script to /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/fakehome/.local/bin Installing venn_mpl.py script to /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/fakehome/.local/bin Installing annotate.py script to /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/fakehome/.local/bin Installing peak_pie.py script to /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/fakehome/.local/bin Installing intersection_matrix.py script to /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/fakehome/.local/bin Installing intron_exon_reads.py script to /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/fakehome/.local/bin Installing pbt_plotting_example.py script to /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/fakehome/.local/bin Installing pybedtools script to /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/fakehome/.local/bin Installed /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0 Processing dependencies for pybedtools==0.8.0 Searching for six==1.15.0 Best match: six 1.15.0 Adding six 1.15.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for pysam==0.15.4 Best match: pysam 0.15.4 Adding pysam 0.15.4 to easy-install.pth file Using /usr/lib/python3/dist-packages Finished processing dependencies for pybedtools==0.8.0 python3 setup.py build_sphinx running build_sphinx Running Sphinx v3.3.1 making output directory... done [autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst [autosummary] generating autosummary for: /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.scripts.venn_gchart.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.scripts.venn_mpl.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.add_color.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.bedgraph_scale.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.extend_fields.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.five_prime.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.greater_than.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.less_than.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.normalized_to_length.rst, /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.three_prime.rst building [mo]: targets for 0 po files that are out of date building [html]: targets for 48 source files that are out of date updating environment: [new config] 163 added, 0 changed, 0 removed reading sources... 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Highlighting skipped. /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/pybedtools/bedtool.py:docstring of pybedtools.bedtool.BedTool.window_maker:16: WARNING: Could not lex literal_block as "python". Highlighting skipped. /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/default-arguments.rst:35: WARNING: Could not lex literal_block as "python". Highlighting skipped. /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/topical-design-principles.rst:120: WARNING: unknown option: mergeBed -i /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/docs/source/topical-design-principles.rst:127: WARNING: unknown option: -i generating indices... genindex py-modindex done highlighting module code... [ 7%] pybedtools highlighting module code... [ 15%] pybedtools.bedtool highlighting module code... [ 23%] pybedtools.cbedtools highlighting module code... [ 30%] pybedtools.contrib.bigbed highlighting module code... 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The HTML pages are in build/sphinx/html. make[1]: Leaving directory '/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0' dh_auto_test -a -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools running install running build running build_py copying pybedtools/version.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9 creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/genome_registry.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.cpython-39-x86_64-linux-gnu.so -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/__init__.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/__init__.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/plotting.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/bigwig.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/bigbed.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/venn_maker.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/featurefuncs.pyx -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/stats.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_helpers.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/regression_tests.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/gchart-expected.png -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/__init__.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/tfuncs.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_scripts.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_gzip_support.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_merge227.yaml -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_issues.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_len_leak.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_contrib.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_merge215.yaml -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/mpl-expected.png -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/c.gff -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/b.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/a.links.html -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/y.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/venn.b.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/__init__.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/small.fastq -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/exons.gff -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/x.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/hg19.gff -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/m1.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/v.vcf -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/small.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/bedpe.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/x.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/164.gtf -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/a.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/issue_121.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/reads.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/d.gff -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test.fa -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.gff -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/expand_test.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test.fa.fai -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/a.igv_script -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/venn.c.bed -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test1.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_cbedtools.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_iter.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_cases.yaml -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/filenames.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/__main__.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.cpp -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/settings.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/bedFile.cpp -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/fileType.cpp -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/gzstream.h -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/gzstream.cpp -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/fileType.h -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/bedFile.h -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/bedtool.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/_Window.pyx -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/featurefuncs.cpython-39-x86_64-linux-gnu.so -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/helpers.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/featurefuncs.cpp -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/paths.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/version.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/logger.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.pxd -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.pyx -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/parallel.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/venn_mpl.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/py_ms_example.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/__init__.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/venn_gchart.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/examples copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/examples/pbt_plotting_example.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/examples copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/peak_pie.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/pybedtools -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/annotate.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/intron_exon_reads.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/intersection_matrix.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/stats.py to stats.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_scripts.py to test_scripts.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test1.py to test1.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/filenames.py to filenames.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/__main__.py to __main__.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/settings.py to settings.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/bedtool.py to bedtool.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/helpers.py to helpers.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/paths.py to paths.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/version.py to version.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/logger.py to logger.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/parallel.py to parallel.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/venn_mpl.py to venn_mpl.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/py_ms_example.py to py_ms_example.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/venn_gchart.py to venn_gchart.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/examples/pbt_plotting_example.py to pbt_plotting_example.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/peak_pie.py to peak_pie.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/annotate.py to annotate.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/intron_exon_reads.py to intron_exon_reads.cpython-39.pyc byte-compiling /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/intersection_matrix.py to intersection_matrix.cpython-39.pyc running install_egg_info Copying pybedtools.egg-info to /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools-0.8.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/venn_mpl.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/venn_gchart.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/peak_pie.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/pybedtools -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/annotate.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/pbt_plotting_example.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/intron_exon_reads.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/intersection_matrix.py -> /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin changing mode of /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/venn_mpl.py to 755 changing mode of /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/venn_gchart.py to 755 changing mode of /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/peak_pie.py to 755 changing mode of /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/pybedtools to 755 changing mode of /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/annotate.py to 755 changing mode of /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/pbt_plotting_example.py to 755 changing mode of /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/intron_exon_reads.py to 755 changing mode of /build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/intersection_matrix.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0' dh_install rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression mkdir -p debian/pybedtools-bin/usr/bin mkdir -p debian/pybedtools-bin/usr/share/doc/pybedtools-bin/examples mv debian/python3-pybedtools/usr/bin/*example* debian/pybedtools-bin/usr/share/doc/pybedtools-bin/examples mv debian/python3-pybedtools/usr/bin/* debian/pybedtools-bin/usr/bin/ rm -fr debian/python3-pybedtools/usr/bin make[1]: Leaving directory '/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0' dh_installdocs -a -O--buildsystem=pybuild dh_sphinxdoc -a -O--buildsystem=pybuild dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installinit -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild debian/rules override_dh_fixperms-arch make[1]: Entering directory '/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0' dh_fixperms -a chmod -x debian/*/usr/lib/python3/dist-packages/pybedtools/scripts/pybedtools make[1]: Leaving directory '/build/python-pybedtools-ja5vbp/python-pybedtools-0.8.0' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.8.0-5+b2_amd64.deb'. dpkg-deb: building package 'python3-pybedtools-dbgsym' in '../python3-pybedtools-dbgsym_0.8.0-5+b2_amd64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../python-pybedtools_0.8.0-5+b2_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/python-pybedtools-ja5vbp /tmp/python-pybedtools-0.8.0-5+b2mhd1ozxj I: cleaning package lists and apt cache... I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.m1YDMZR8VK... I: success in 797.8256 seconds md5: python3-pybedtools-dbgsym_0.8.0-5+b2_amd64.deb: OK md5: Value of 'md5' differs for python3-pybedtools_0.8.0-5+b2_amd64.deb md5: Size differs for python3-pybedtools_0.8.0-5+b2_amd64.deb sha1: python3-pybedtools-dbgsym_0.8.0-5+b2_amd64.deb: OK sha1: Value of 'sha1' differs for python3-pybedtools_0.8.0-5+b2_amd64.deb sha1: Size differs for python3-pybedtools_0.8.0-5+b2_amd64.deb sha256: python3-pybedtools-dbgsym_0.8.0-5+b2_amd64.deb: OK sha256: Value of 'sha256' differs for python3-pybedtools_0.8.0-5+b2_amd64.deb sha256: Size differs for python3-pybedtools_0.8.0-5+b2_amd64.deb Checksums: FAIL diffoscope run passed