Input buildinfo: https://buildinfos.debian.net/buildinfo-pool/p/python-pbcore/python-pbcore_1.7.1+git20200430.a127b1e+dfsg-1_all.buildinfo Use metasnap for getting required timestamps New buildinfo file: /tmp/python-pbcore-1.7.1+git20200430.a127b1e+dfsg-1byhafbdz/python-pbcore_1.7.1+git20200430.a127b1e+dfsg-1_all.buildinfo Get source package info: python-pbcore=1.7.1+git20200430.a127b1e+dfsg-1 Source URL: http://snapshot.notset.fr/mr/package/python-pbcore/1.7.1+git20200430.a127b1e+dfsg-1/srcfiles?fileinfo=1 env -i PATH=/usr/sbin:/usr/bin:/sbin:/bin TMPDIR=/tmp mmdebstrap --arch=amd64 --include=autoconf=2.69-11.1 automake=1:1.16.2-1 autopoint=0.19.8.1-10 autotools-dev=20180224.1 base-files=11 base-passwd=3.5.47 bash=5.0-6 binutils=2.34-6 binutils-common=2.34-6 binutils-x86-64-linux-gnu=2.34-6 bsdmainutils=11.1.2+b1 bsdutils=1:2.35.1-1 build-essential=12.8 bzip2=1.0.8-2 ca-certificates=20190110 coreutils=8.30-3+b1 cpp=4:9.2.1-3.1 cpp-9=9.3.0-11 dash=0.5.10.2-7 debconf=1.5.74 debhelper=13 debianutils=4.9.1 dh-autoreconf=19 dh-python=4.20200315 dh-strip-nondeterminism=1.8.0-1 diffutils=1:3.7-3 docutils-common=0.16+dfsg-2 dpkg=1.19.7 dpkg-dev=1.19.7 dwz=0.13-5 fdisk=2.35.1-1 file=1:5.38-4 findutils=4.7.0-1 g++=4:9.2.1-3.1 g++-9=9.3.0-11 gcc=4:9.2.1-3.1 gcc-10-base=10-20200502-1 gcc-9=9.3.0-11 gcc-9-base=9.3.0-11 gettext=0.19.8.1-10 gettext-base=0.19.8.1-10 grep=3.4-1 groff-base=1.22.4-4 gzip=1.10-2 hostname=3.23 init-system-helpers=1.57 intltool-debian=0.35.0+20060710.5 libacl1=2.2.53-8 libaec0=1.0.4-1 libarchive-zip-perl=1.68-1 libasan5=9.3.0-11 libatomic1=10-20200502-1 libattr1=1:2.4.48-5 libaudit-common=1:2.8.5-3 libaudit1=1:2.8.5-3+b1 libbinutils=2.34-6 libblas3=3.9.0-2 libblkid1=2.35.1-1 libbrotli1=1.0.7-6.1 libbsd0=0.10.0-1 libbz2-1.0=1.0.8-2 libc-bin=2.30-4 libc-dev-bin=2.30-4 libc6=2.30-4 libc6-dev=2.30-4 libcap-ng0=0.7.9-2.1+b2 libcc1-0=10-20200502-1 libcom-err2=1.45.6-1 libcroco3=0.6.13-1 libcrypt-dev=1:4.4.16-1 libcrypt1=1:4.4.16-1 libctf-nobfd0=2.34-6 libctf0=2.34-6 libcurl3-gnutls=7.68.0-1 libdb5.3=5.3.28+dfsg1-0.6 libdebconfclient0=0.251 libdebhelper-perl=13 libdeflate0=1.5-3 libdpkg-perl=1.19.7 libelf1=0.176-1.1 libexpat1=2.2.9-1 libfdisk1=2.35.1-1 libffi7=3.3-4 libfile-stripnondeterminism-perl=1.8.0-1 libfreetype6=2.10.1-2 libgcc-9-dev=9.3.0-11 libgcc-s1=10-20200502-1 libgcrypt20=1.8.5-5 libgdbm-compat4=1.18.1-5 libgdbm6=1.18.1-5 libgfortran5=10-20200502-1 libglib2.0-0=2.64.2-1 libgmp10=2:6.2.0+dfsg-4 libgnutls30=3.6.13-2 libgomp1=10-20200502-1 libgpg-error0=1.37-1 libgssapi-krb5-2=1.17-7 libhdf5-103-1=1.10.6+repack-2 libhdf5-hl-100=1.10.6+repack-2 libhogweed5=3.5.1+really3.5.1-2 libhts3=1.10.2-3 libicu63=63.2-3 libidn2-0=2.3.0-1 libimagequant0=2.12.2-1.1 libisl22=0.22.1-1 libitm1=10-20200502-1 libjbig0=2.1-3.1+b2 libjpeg62-turbo=1:1.5.2-2+b1 libjs-jquery=3.5.0+dfsg-2 libjs-jquery-hotkeys=0~20130707+git2d51e3a9+dfsg-2 libjs-jquery-isonscreen=1.2.0-1 libjs-jquery-metadata=12-1.1 libjs-jquery-tablesorter=1:2.31.1+dfsg1-1 libjs-jquery-throttle-debounce=1.1+dfsg.1-1 libjs-sphinxdoc=2.4.3-2 libjs-underscore=1.9.1~dfsg-1 libk5crypto3=1.17-7 libkeyutils1=1.6.1-2 libkrb5-3=1.17-7 libkrb5support0=1.17-7 liblapack3=3.9.0-2 liblcms2-2=2.9-4+b1 libldap-2.4-2=2.4.50+dfsg-1 libldap-common=2.4.50+dfsg-1 liblsan0=10-20200502-1 liblz4-1=1.9.2-2 liblzma5=5.2.4-1+b1 libmagic-mgc=1:5.38-4 libmagic1=1:5.38-4 libmount1=2.35.1-1 libmpc3=1.1.0-1 libmpdec2=2.4.2-3 libmpfr6=4.0.2-1 libncursesw6=6.2-1 libnettle7=3.5.1+really3.5.1-2 libnghttp2-14=1.40.0-1 libp11-kit0=0.23.20-1 libpam-modules=1.3.1-5 libpam-modules-bin=1.3.1-5 libpam-runtime=1.3.1-5 libpam0g=1.3.1-5 libpcre2-8-0=10.34-7 libpcre3=2:8.39-12+b1 libperl5.30=5.30.0-10 libpipeline1=1.5.2-2 libpng16-16=1.6.37-2 libpsl5=0.21.0-1 libpython3-stdlib=3.8.2-3 libpython3.8-minimal=3.8.3~rc1-1 libpython3.8-stdlib=3.8.3~rc1-1 libquadmath0=10-20200502-1 libreadline8=8.0-4 librtmp1=2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2=2.1.27+dfsg-2 libsasl2-modules-db=2.1.27+dfsg-2 libseccomp2=2.4.3-1+b1 libselinux1=3.0-1+b3 libsigsegv2=2.12-2 libsmartcols1=2.35.1-1 libsqlite3-0=3.31.1-5 libssh2-1=1.8.0-2.1 libssl1.1=1.1.1g-1 libstdc++-9-dev=9.3.0-11 libstdc++6=10-20200502-1 libsub-override-perl=0.09-2 libsystemd0=245.5-2 libsz2=1.0.4-1 libtasn1-6=4.16.0-2 libtiff5=4.1.0+git191117-2 libtinfo6=6.2-1 libtool=2.4.6-14 libtsan0=10-20200502-1 libubsan1=10-20200502-1 libuchardet0=0.0.6-3 libudev1=245.5-2 libunistring2=0.9.10-2 libuuid1=2.35.1-1 libwebp6=0.6.1-2+b1 libwebpdemux2=0.6.1-2+b1 libwebpmux3=0.6.1-2+b1 libxml2=2.9.10+dfsg-5 libzstd1=1.4.4+dfsg-3 linux-libc-dev=5.6.7-1 login=1:4.8.1-1 lsb-base=11.1.0 m4=1.4.18-4 make=4.2.1-1.3 man-db=2.9.1-1 mawk=1.3.4.20200120-2 mime-support=3.64 ncurses-base=6.2-1 ncurses-bin=6.2-1 node-jquery=3.5.0+dfsg-2 openssl=1.1.1g-1 patch=2.7.6-6 perl=5.30.0-10 perl-base=5.30.0-10 perl-modules-5.30=5.30.0-10 po-debconf=1.0.21 pylint=2.4.4-2 python-babel-localedata=2.8.0+dfsg.1-3 python3=3.8.2-3 python3-alabaster=0.7.8-1.1 python3-all=3.8.2-3 python3-apipkg=1.5-4 python3-astroid=2.3.3-1 python3-atomicwrites=1.3.0-1 python3-attr=19.3.0-4 python3-babel=2.8.0+dfsg.1-3 python3-biopython=1.76+dfsg-1+b1 python3-certifi=2020.4.5.1-1 python3-chardet=3.0.4-7 python3-cov-core=1.15.0-3 python3-coverage=4.5.2+dfsg.1-4+b2 python3-distutils=3.8.2-2 python3-docutils=0.16+dfsg-2 python3-execnet=1.7.1-2 python3-h5py=2.10.0-7 python3-h5py-serial=2.10.0-7 python3-idna=2.9-1 python3-imagesize=1.2.0-2 python3-importlib-metadata=1.6.0-1 python3-isort=4.3.4+ds1-2 python3-jinja2=2.11.1-1 python3-lazy-object-proxy=1.4.3-1+b1 python3-lib2to3=3.8.2-2 python3-logilab-common=1.4.3-2 python3-markupsafe=1.1.1-1+b1 python3-mccabe=0.6.1-3 python3-minimal=3.8.2-3 python3-more-itertools=4.2.0-2 python3-nose=1.3.7-5 python3-nose2=0.9.1-3 python3-numpy=1:1.18.3-1 python3-packaging=20.3-1.2 python3-pil=7.0.0-4+b1 python3-pkg-resources=46.1.3-1 python3-pluggy=0.13.0-4 python3-py=1.8.1-2 python3-pygments=2.3.1+dfsg-3 python3-pyparsing=2.4.7-1 python3-pysam=0.15.4+ds-2 python3-pytest=4.6.9-3 python3-pytest-cov=2.8.1-1 python3-pytest-forked=1.1.3-1 python3-pytest-runner=2.11.1-1.2 python3-pytest-xdist=1.31.0-1 python3-reportlab=3.5.34-1 python3-reportlab-accel=3.5.34-1+b1 python3-requests=2.23.0+dfsg-2 python3-roman=2.0.0-4 python3-setuptools=46.1.3-1 python3-six=1.14.0-3 python3-sphinx=2.4.3-2 python3-tz=2019.3-2 python3-uritools=3.0.0-1 python3-urllib3=1.25.9-1 python3-wcwidth=0.1.9+dfsg1-1 python3-wrapt=1.11.2-2+b2 python3-zipp=1.0.0-2 python3.8=3.8.3~rc1-1 python3.8-minimal=3.8.3~rc1-1 readline-common=8.0-4 sed=4.7-1 sensible-utils=0.0.12+nmu1 sgml-base=1.30 sphinx-common=2.4.3-2 sysvinit-utils=2.96-3 tar=1.30+dfsg-7 tzdata=2020a-1 util-linux=2.35.1-1 xml-core=0.18+nmu1 xz-utils=5.2.4-1+b1 zlib1g=1:1.2.11.dfsg-2 --variant=apt --aptopt=Acquire::Check-Valid-Until "false" --aptopt=Acquire::http::Dl-Limit "1000"; --aptopt=Acquire::https::Dl-Limit "1000"; --aptopt=Acquire::Retries "5"; --aptopt=APT::Get::allow-downgrades "true"; --keyring=/usr/share/keyrings/ --essential-hook=chroot "$1" sh -c "apt-get --yes install fakeroot util-linux" --essential-hook=copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ --essential-hook=chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200505T210428Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200504T205026Z/ unstable main' >> /etc/apt/sources.list && apt-get update" --customize-hook=chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash --customize-hook=chroot "$1" env sh -c "apt-get source --only-source -d python-pbcore=1.7.1+git20200430.a127b1e+dfsg-1 && mkdir -p /build/python-pbcore-htf0zu && dpkg-source --no-check -x /*.dsc /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg && chown -R builduser:builduser /build/python-pbcore-htf0zu" --customize-hook=chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1588693386" dpkg-buildpackage -uc -a amd64 --build=all" --customize-hook=sync-out /build/python-pbcore-htf0zu /tmp/python-pbcore-1.7.1+git20200430.a127b1e+dfsg-1byhafbdz bullseye /dev/null deb http://snapshot.notset.fr/archive/debian/20200504T205026Z unstable main I: automatically chosen mode: root I: chroot architecture amd64 is equal to the host's architecture I: automatically chosen format: tar I: using /tmp/mmdebstrap.OOKmvftd_M as tempdir I: running apt-get update... I: downloading packages with apt... I: extracting archives... I: installing essential packages... I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "apt-get --yes install fakeroot util-linux"' exec /tmp/mmdebstrap.OOKmvftd_M Reading package lists... Building dependency tree... util-linux is already the newest version (2.35.1-1). The following NEW packages will be installed: fakeroot libfakeroot 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 393 kB of additional disk space will be used. Get:1 http://snapshot.notset.fr/archive/debian/20200504T205026Z unstable/main amd64 libfakeroot amd64 1.24-1 [45.7 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200504T205026Z unstable/main amd64 fakeroot amd64 1.24-1 [85.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (1014 kB/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 4509 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for libc-bin (2.30-4) ... I: running special hook: copy-in /usr/share/keyrings/debian-archive-bullseye-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-security-automatic.gpg /usr/share/keyrings/debian-archive-bullseye-stable.gpg /usr/share/keyrings/debian-archive-buster-automatic.gpg /usr/share/keyrings/debian-archive-buster-security-automatic.gpg /usr/share/keyrings/debian-archive-buster-stable.gpg /usr/share/keyrings/debian-archive-keyring.gpg /usr/share/keyrings/debian-archive-removed-keys.gpg /usr/share/keyrings/debian-archive-stretch-automatic.gpg /usr/share/keyrings/debian-archive-stretch-security-automatic.gpg /usr/share/keyrings/debian-archive-stretch-stable.gpg /usr/share/keyrings/debian-ports-archive-keyring-removed.gpg /usr/share/keyrings/debian-ports-archive-keyring.gpg /usr/share/keyrings/debian-keyring.gpg /etc/apt/trusted.gpg.d/ I: running --essential-hook in shell: sh -c 'chroot "$1" sh -c "rm /etc/apt/sources.list && echo 'deb http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb-src http://snapshot.notset.fr/archive/debian/20210814T212851Z/ bookworm main deb http://snapshot.notset.fr/archive/debian/20200505T210428Z/ unstable main deb http://snapshot.notset.fr/archive/debian/20200504T205026Z/ unstable main' >> /etc/apt/sources.list && apt-get update"' exec /tmp/mmdebstrap.OOKmvftd_M Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm InRelease [81.6 kB] Get:2 http://snapshot.notset.fr/archive/debian/20200505T210428Z unstable InRelease [146 kB] Hit:3 http://snapshot.notset.fr/archive/debian/20200504T205026Z unstable InRelease Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Ign:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources Ign:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages Get:4 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main Sources [11.4 MB] Get:5 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main amd64 Packages [11.1 MB] Ign:6 http://snapshot.notset.fr/archive/debian/20200505T210428Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200505T210428Z unstable/main amd64 Packages Ign:6 http://snapshot.notset.fr/archive/debian/20200505T210428Z unstable/main amd64 Packages Get:6 http://snapshot.notset.fr/archive/debian/20200505T210428Z unstable/main amd64 Packages [11.1 MB] Fetched 33.9 MB in 32s (1063 kB/s) Reading package lists... I: installing remaining packages inside the chroot... I: running --customize-hook in shell: sh -c 'chroot "$1" useradd --no-create-home -d /nonexistent -p "" builduser -s /bin/bash' exec /tmp/mmdebstrap.OOKmvftd_M I: running --customize-hook in shell: sh -c 'chroot "$1" env sh -c "apt-get source --only-source -d python-pbcore=1.7.1+git20200430.a127b1e+dfsg-1 && mkdir -p /build/python-pbcore-htf0zu && dpkg-source --no-check -x /*.dsc /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg && chown -R builduser:builduser /build/python-pbcore-htf0zu"' exec /tmp/mmdebstrap.OOKmvftd_M Reading package lists... NOTICE: 'python-pbcore' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-pbcore.git Please use: git clone https://salsa.debian.org/med-team/python-pbcore.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2929 kB of source archives. Get:1 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-pbcore 1.7.1+git20200430.a127b1e+dfsg-1 (dsc) [2739 B] Get:2 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-pbcore 1.7.1+git20200430.a127b1e+dfsg-1 (tar) [2918 kB] Get:3 http://snapshot.notset.fr/archive/debian/20210814T212851Z bookworm/main python-pbcore 1.7.1+git20200430.a127b1e+dfsg-1 (diff) [7948 B] Fetched 2929 kB in 2s (1188 kB/s) Download complete and in download only mode W: Download is performed unsandboxed as root as file 'python-pbcore_1.7.1+git20200430.a127b1e+dfsg-1.dsc' couldn't be accessed by user '_apt'. - pkgAcquire::Run (13: Permission denied) dpkg-source: info: extracting python-pbcore in /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg dpkg-source: info: unpacking python-pbcore_1.7.1+git20200430.a127b1e+dfsg.orig.tar.xz dpkg-source: info: unpacking python-pbcore_1.7.1+git20200430.a127b1e+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying doc-theme.patch dpkg-source: info: applying enable-build-time-testing.patch I: running --customize-hook in shell: sh -c 'chroot "$1" env --unset=TMPDIR runuser builduser -c "cd /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg && env DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1588693386" dpkg-buildpackage -uc -a amd64 --build=all"' exec /tmp/mmdebstrap.OOKmvftd_M dpkg-buildpackage: info: source package python-pbcore dpkg-buildpackage: info: source version 1.7.1+git20200430.a127b1e+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . debian/rules clean debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' LC_ALL=C.UTF-8 dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' rm -f doc/pbcore.data.datasets.rst doc/pbcore.io.align.rst doc/pbcore.io.dataset.pyxb.rst rm -fr coverage.xml .eggs/README.txt .pytest_cache rm -rf .pybuild rm -rf _tmp doc/_build/ find . -name __pycache__ | xargs -r rm -rf rm -f .coverage nosetests.xml rm -rf pbcore.egg-info make[1]: Leaving directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-indep debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' LC_ALL=C.UTF-8 dh binary-indep --with python3 --buildsystem=pybuild dh_update_autotools_config -i -O--buildsystem=pybuild dh_autoreconf -i -O--buildsystem=pybuild dh_auto_configure -i -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py config running config /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_auto_build I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore copying pbcore/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore copying pbcore/sequence.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/model copying pbcore/model/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/model copying pbcore/model/baseRegions.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/model creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io copying pbcore/io/VcfIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io copying pbcore/io/GffIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io copying pbcore/io/FofnIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io copying pbcore/io/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io copying pbcore/io/FastaIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io copying pbcore/io/FastqIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io copying pbcore/io/_utils.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io copying pbcore/io/base.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io copying pbcore/io/opener.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry copying pbcore/chemistry/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry copying pbcore/chemistry/chemistry.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util copying pbcore/util/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util copying pbcore/util/ToolRunner.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util copying pbcore/util/statistics.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util copying pbcore/util/decorators.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetErrors.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetWriter.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetUtils.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetValidator.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetMetaTypes.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetMembers.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/run_split.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetReader.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/utils.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align copying pbcore/io/align/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align copying pbcore/io/align/BamAlignment.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align copying pbcore/io/align/_BamSupport.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align copying pbcore/io/align/_AlignmentMixin.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align copying pbcore/io/align/BlasrIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align copying pbcore/io/align/BamIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align copying pbcore/io/align/PacBioBamIndex.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb copying pbcore/io/dataset/pyxb/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb copying pbcore/io/dataset/pyxb/_pbmeta.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb copying pbcore/io/dataset/pyxb/_pbsample.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb copying pbcore/io/dataset/pyxb/_pbbase.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb copying pbcore/io/dataset/pyxb/DataSetXsd.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb copying pbcore/io/dataset/pyxb/_pbrk.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets running egg_info creating pbcore.egg-info writing pbcore.egg-info/PKG-INFO writing dependency_links to pbcore.egg-info/dependency_links.txt writing entry points to pbcore.egg-info/entry_points.txt writing requirements to pbcore.egg-info/requires.txt writing top-level names to pbcore.egg-info/top_level.txt writing manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) warning: no files found matching '*.txt' writing manifest file 'pbcore.egg-info/SOURCES.txt' creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry/resources copying pbcore/chemistry/resources/mapping.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry/resources copying pbcore/data/Fluidigm_human_amplicons.fasta -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/Fluidigm_human_amplicons_tiny.fasta -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/barcodes-ed65-450.fasta -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/barcodes-ed65-450.fasta.fai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/blasr-output.m4 -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/blasr-output.m5 -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/chemistry.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/empty.aligned_subreads.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/empty.aligned_subreads.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/empty.ccs.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/empty.ccs.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/empty2.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/empty2.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/lambdaNEB.fa -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/lambdaNEB.fa.fai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/variants.gff -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/weird.fa -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/weird.fa.fai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data copying pbcore/data/datasets/CollectionMetadata.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/alignment.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/barcode.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/ccsaligned.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/ccsread.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/contig.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/empty_lambda.aligned.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/empty_lambda.aligned.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/empty_lambda.aligned.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/fofn.fofn -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/lambda.alignmentset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/lambda.referenceset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim.alignmentset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.alignmentset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.pbalign.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.reference.fasta -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.reference.fasta.fai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.referenceset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreads.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreads.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreadset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.alignmentset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.pbalign.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreads.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreads.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreadset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/reference.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/subread.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/subreadSetWithStats.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets /usr/bin/make doc make[2]: Entering directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' sphinx-apidoc -o doc/ pbcore/ && cd doc/ && make html File doc/pbcore.rst already exists, skipping. File doc/pbcore.chemistry.rst already exists, skipping. File doc/pbcore.data.rst already exists, skipping. Creating file doc/pbcore.data.datasets.rst. File doc/pbcore.io.rst already exists, skipping. Creating file doc/pbcore.io.align.rst. File doc/pbcore.io.dataset.rst already exists, skipping. Creating file doc/pbcore.io.dataset.pyxb.rst. File doc/pbcore.model.rst already exists, skipping. File doc/pbcore.util.rst already exists, skipping. File doc/modules.rst already exists, skipping. make[3]: Entering directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc' sphinx-apidoc -o . -d 4 ../pbcore/ File ./pbcore.rst already exists, skipping. File ./pbcore.chemistry.rst already exists, skipping. File ./pbcore.data.rst already exists, skipping. File ./pbcore.data.datasets.rst already exists, skipping. File ./pbcore.io.rst already exists, skipping. File ./pbcore.io.align.rst already exists, skipping. File ./pbcore.io.dataset.rst already exists, skipping. File ./pbcore.io.dataset.pyxb.rst already exists, skipping. File ./pbcore.model.rst already exists, skipping. File ./pbcore.util.rst already exists, skipping. File ./modules.rst already exists, skipping. sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v2.4.3 making output directory... done loading intersphinx inventory from http://docs.python.org/objects.inv... intersphinx inventory has moved: http://docs.python.org/objects.inv -> https://docs.python.org/3/objects.inv building [mo]: targets for 0 po files that are out of date building [html]: targets for 12 source files that are out of date updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] index reading sources... [ 16%] modules reading sources... [ 25%] pbcore reading sources... [ 33%] pbcore.chemistry reading sources... [ 41%] pbcore.data reading sources... [ 50%] pbcore.data.datasets reading sources... [ 58%] pbcore.io reading sources... [ 66%] pbcore.io.align reading sources... [ 75%] pbcore.io.dataset reading sources... [ 83%] pbcore.io.dataset.pyxb reading sources... [ 91%] pbcore.model reading sources... [100%] pbcore.util /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.rst:7: WARNING: toctree contains reference to nonexisting document 'pbcore.deprecated' WARNING: autodoc: failed to import module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'chemistry.chemistry' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'chemistry' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'data' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'data.datasets' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.BamAlignment' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.BamReader' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.IndexedBamReader' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastaTable' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastaRecord' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastaReader' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastaWriter' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastqRecord' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastqReader' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastqWriter' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.Gff3Record' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.GffReader' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.GffWriter' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.align.BamAlignment' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.align.BamIO' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.align.BlasrIO' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.align.PacBioBamIndex' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.align' from module 'pbcore'; the following exception was raised: No module named 'pbcore' /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.io.dataset.rst:352: WARNING: Could not import class or module 'pbcore.io.dataset.DataSetIO' specified for inheritance diagram WARNING: autodoc: failed to import module 'io.dataset.DataSetIO' from module 'pbcore'; the following exception was raised: No module named 'pbcore' /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.io.dataset.rst:376: WARNING: Could not import class or module 'pbcore.io.dataset.DataSetMembers' specified for inheritance diagram WARNING: autodoc: failed to import module 'io.dataset.DataSetMembers' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.dataset.pyxb.DataSetXsd' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.dataset.pyxb' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'util.Process' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'util.ToolRunner' from module 'pbcore'; the following exception was raised: No module named 'pbcore' looking for now-outdated files... none found pickling environment... done checking consistency... /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/modules.rst: WARNING: document isn't included in any toctree /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.data.datasets.rst: WARNING: document isn't included in any toctree /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.io.align.rst: WARNING: document isn't included in any toctree /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.io.dataset.rst: WARNING: document isn't included in any toctree /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.io.dataset.pyxb.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 8%] index writing output... [ 16%] modules writing output... [ 25%] pbcore writing output... [ 33%] pbcore.chemistry writing output... [ 41%] pbcore.data writing output... [ 50%] pbcore.data.datasets writing output... [ 58%] pbcore.io writing output... [ 66%] pbcore.io.align writing output... [ 75%] pbcore.io.dataset writing output... [ 83%] pbcore.io.dataset.pyxb writing output... [ 91%] pbcore.model writing output... [100%] pbcore.util generating indices... genindexdone writing additional pages... searchdone copying static files... ... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 37 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[3]: Leaving directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc' make[2]: Leaving directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' make[1]: Leaving directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' # we need to exclude tests requiring pbtestdata which is not packaged mkdir -p /tmp/tests_avoid mv `grep -l pbtestdata tests/*.py` /tmp/tests_avoid # for whatever reason this test is failing as well - just skip it for the moment mv tests/test_pbdataset_filters.py /tmp/tests_avoid PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="{interpreter} setup.py test" \ dh_auto_test I: pybuild base:217: python3.8 setup.py test running pytest /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. running egg_info writing pbcore.egg-info/PKG-INFO writing dependency_links to pbcore.egg-info/dependency_links.txt writing entry points to pbcore.egg-info/entry_points.txt writing requirements to pbcore.egg-info/requires.txt writing top-level names to pbcore.egg-info/top_level.txt reading manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' writing manifest file 'pbcore.egg-info/SOURCES.txt' running build_ext ============================= test session starts ============================== platform linux -- Python 3.8.3rc1, pytest-4.6.9, py-1.8.1, pluggy-0.13.0 -- /usr/bin/python3.8 cachedir: .pytest_cache rootdir: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg, inifile: pytest.ini plugins: cov-2.8.1, xdist-1.31.0, forked-1.1.3 gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I / gw8 I / gw9 I / gw10 I / gw11 I / gw12 I / gw13 I / gw14 I / gw15 I / gw16 I / gw17 I / gw18 I / gw19 I / gw20 I / gw21 I / gw22 I / gw23 I / gw24 I / gw25 I / gw26 I / gw27 I / gw28 I / gw29 I / gw30 I / gw31 I [gw0] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw1] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw2] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw3] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw4] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw5] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw6] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw7] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw8] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw9] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw10] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw11] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw12] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw13] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw14] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw15] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw16] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw17] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw18] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw19] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw20] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw21] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw22] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw23] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw24] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw25] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw26] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw27] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw28] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw29] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw30] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw31] linux Python 3.8.3 cwd: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw1] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw0] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw2] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw4] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw3] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw5] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw6] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw7] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw8] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw9] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw10] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw11] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw12] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw14] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw13] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw15] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw16] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw17] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw18] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw19] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw20] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw21] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw22] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw23] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw25] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw26] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw24] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw27] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw28] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw30] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw29] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] [gw31] Python 3.8.3rc1 (default, Apr 30 2020, 07:33:30) -- [GCC 9.3.0] gw0 [140] / gw1 [140] / gw2 [140] / gw3 [140] / gw4 [140] / gw5 [140] / gw6 [140] / gw7 [140] / gw8 [140] / gw9 [140] / gw10 [140] / gw11 [140] / gw12 [140] / gw13 [140] / gw14 [140] / gw15 [140] / gw16 [140] / gw17 [140] / gw18 [140] / gw19 [140] / gw20 [140] / gw21 [140] / gw22 [140] / gw23 [140] / gw24 [140] / gw25 [140] / gw26 [140] / gw27 [140] / gw28 [140] / gw29 [140] / gw30 [140] / gw31 [140] scheduling tests via LoadScopeScheduling tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ [gw3] [ 0%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations tests/test_pbcore_io_BlasrIO.py::test_m4 tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str [gw21] [ 1%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader [gw23] [ 2%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs [gw16] [ 2%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv tests/test_pbcore_io_FofnIO.py::test_simple tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers [gw22] [ 3%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ [gw15] [ 4%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName [gw21] [ 5%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString [gw21] [ 5%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString [gw7] [ 6%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties [gw18] [ 7%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse [gw12] [ 7%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ [gw12] [ 8%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString [gw12] [ 9%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement [gw17] [ 10%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ [gw28] [ 10%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv [gw30] [ 11%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse tests/test_dataset_run_split.py::test [gw1] [ 12%] SKIPPED tests/test_dataset_run_split.py::test tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency [gw27] [ 12%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement [gw30] [ 13%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement [gw30] [ 14%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac [gw14] [ 15%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta [gw15] [ 15%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName [gw17] [ 16%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString [gw17] [ 17%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 [gw17] [ 17%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 [gw13] [ 18%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 [gw25] [ 19%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted [gw11] [ 20%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 [gw20] [ 20%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple tests/test_pbcore_io_FofnIO.py::test_empty_lines [gw20] [ 21%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines [gw0] [ 22%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement [gw19] [ 22%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 [gw19] [ 23%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support [gw5] [ 24%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support [gw2] [ 25%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations [gw4] [ 25%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 [gw12] [ 26%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById [gw15] [ 27%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById [gw17] [ 27%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 [gw3] [ 28%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable [gw25] [ 29%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 [gw12] [ 30%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len [gw12] [ 30%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation [gw4] [ 31%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation [gw2] [ 32%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName [gw2] [ 32%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead [gw6] [ 33%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition [gw15] [ 34%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice [gw15] [ 35%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len [gw17] [ 35%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len [gw4] [ 36%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName [gw30] [ 37%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error [gw30] [ 37%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff [gw12] [ 38%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead [gw4] [ 39%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq [gw25] [ 40%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff [gw7] [ 40%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names [gw17] [ 41%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead [gw4] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference [gw4] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference [gw4] [ 43%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference [gw2] [ 44%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead [gw2] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference [gw2] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference [gw2] [ 46%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal [gw1] [ 47%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_BlasrIO.py::test_m5 tests/test_pbcore_io_FofnIO.py::test_absolutifying tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 [gw18] [ 47%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 [gw10] [ 48%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord [gw4] [ 49%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript [gw4] [ 50%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript [gw16] [ 50%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 [gw13] [ 51%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file [gw12] [ 52%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal [gw1] [ 52%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire [gw1] [ 53%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire [gw20] [ 54%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying [gw9] [ 55%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get [gw21] [ 55%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get [gw27] [ 56%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd [gw19] [ 57%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 [gw25] [ 57%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy [gw28] [ 58%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy [gw14] [ 59%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta [gw17] [ 60%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal [gw26] [ 60%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted [gw24] [ 61%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index [gw23] [ 62%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord [gw8] [ 62%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties [gw15] [ 63%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta [gw2] [ 64%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript [gw2] [ 65%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex [gw15] [ 65%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments [gw4] [ 66%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments [gw11] [ 67%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 [gw2] [ 67%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange [gw22] [ 68%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error [gw30] [ 69%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange [gw1] [ 70%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index [gw31] [ 70%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype [gw31] [ 71%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix [gw31] [ 72%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges [gw31] [ 72%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges [gw29] [ 73%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws [gw4] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable [gw4] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry [gw4] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV [gw4] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers [gw29] [ 77%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize [gw4] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts [gw4] [ 78%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName [gw2] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable [gw2] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry [gw2] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion [gw4] [ 81%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam [gw2] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore [gw2] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore [gw4] [ 83%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity [gw2] [ 84%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default [gw2] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default [gw4] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed [gw4] [ 86%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed [gw29] [ 87%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws [gw29] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws [gw29] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters [gw29] [ 89%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters [gw29] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split [gw29] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references [gw29] [ 91%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter [gw29] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit [gw29] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks [gw29] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split [gw29] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows [gw29] [ 95%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split [gw29] [ 95%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name [gw29] [ 96%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split [gw29] [ 97%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded [gw29] [ 97%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases [gw29] [ 98%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks [gw29] [ 99%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups [gw29] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups - generated xml file: /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/nosetests.xml - --------- coverage: platform linux, python 3.8.3-candidate-1 --------- Coverage XML written to file coverage.xml ========================== slowest 20 test durations =========================== 2.90s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split 2.41s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange 2.40s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid 1.91s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange 1.49s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws 1.12s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize 1.09s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency 0.80s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations 0.80s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations 0.78s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks 0.70s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta 0.60s call tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties 0.52s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split 0.50s call tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta 0.40s teardown tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file 0.40s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed 0.40s call tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file 0.37s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split 0.30s teardown tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 0.30s call tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted =================== 122 passed, 18 skipped in 156.60 seconds =================== # copy working test data into doc dir as user examples mkdir -p _tmp/usr/share/doc/python3-pbcore cp -a tests _tmp/usr/share/doc/python3-pbcore find _tmp -type d -name __pycache__ | xargs rm -rf # move back ignored tests mv /tmp/tests_avoid/* tests rmdir /tmp/tests_avoid make[1]: Leaving directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -i -O--buildsystem=pybuild dh_prep -i -O--buildsystem=pybuild dh_auto_install -i -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore running install running build running build_py running egg_info writing pbcore.egg-info/PKG-INFO writing dependency_links to pbcore.egg-info/dependency_links.txt writing entry points to pbcore.egg-info/entry_points.txt writing requirements to pbcore.egg-info/requires.txt writing top-level names to pbcore.egg-info/top_level.txt reading manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' /usr/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) warning: no files found matching '*.txt' writing manifest file 'pbcore.egg-info/SOURCES.txt' creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/__pycache__ copying pbcore/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/__pycache__ copying pbcore/__pycache__/sequence.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/__pycache__ creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FastaIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FastqIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FofnIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/GffIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/VcfIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/_utils.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/base.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/opener.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__ creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry/__pycache__ copying pbcore/chemistry/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry/__pycache__ copying pbcore/chemistry/__pycache__/chemistry.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry/__pycache__ creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/__pycache__ copying pbcore/data/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/__pycache__ creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/decorators.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/statistics.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util/__pycache__ creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetErrors.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetMembers.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetReader.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetUtils.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetValidator.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetWriter.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/run_split.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/utils.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__ creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BamAlignment.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BamIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BlasrIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/PacBioBamIndex.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/_AlignmentMixin.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/_BamSupport.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__ creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb/__pycache__ copying pbcore/io/dataset/pyxb/__pycache__/DataSetXsd.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb/__pycache__ copying pbcore/io/dataset/pyxb/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb/__pycache__ creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/__pycache__ copying pbcore/data/datasets/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/__pycache__ running install_lib creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8 creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/model copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/model/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/model copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/model/baseRegions.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/model creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/VcfIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/GffIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/FofnIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/FastaIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/FastqIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/_utils.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/base.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/opener.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/DataSetErrors.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/DataSetWriter.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/DataSetUtils.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/DataSetValidator.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/DataSetMetaTypes.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/DataSetMembers.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/run_split.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/DataSetReader.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/utils.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb/_pbmeta.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb/_pbsample.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb/_pbbase.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb/DataSetXsd.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb/_pbrk.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/pyxb/__pycache__/DataSetXsd.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb/__pycache__ creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__/DataSetValidator.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__/DataSetUtils.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__/run_split.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMembers.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__/DataSetWriter.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__/DataSetErrors.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__/utils.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__/DataSetIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/__pycache__/DataSetReader.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/dataset/DataSetIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/BamAlignment.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/_BamSupport.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/_AlignmentMixin.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/BlasrIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/BamIO.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/PacBioBamIndex.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__/BlasrIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__/PacBioBamIndex.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__/_BamSupport.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__/BamAlignment.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__/BamIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/align/__pycache__/_AlignmentMixin.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/__pycache__ creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__/FofnIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__/_utils.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__/base.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__/VcfIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__/GffIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__/FastqIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__/opener.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/io/__pycache__/FastaIO.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/__pycache__ creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/chemistry copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/chemistry copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry/chemistry.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/chemistry creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/chemistry/resources copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry/resources/mapping.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/chemistry/resources creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/chemistry/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/chemistry/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/chemistry/__pycache__/chemistry.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/chemistry/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/sequence.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/variants.gff -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/lambdaNEB.fa -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/Fluidigm_human_amplicons_tiny.fasta -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/empty.ccs.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/barcodes-ed65-450.fasta.fai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/weird.fa -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/empty.ccs.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/barcodes-ed65-450.fasta -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/empty.aligned_subreads.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/blasr-output.m5 -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/empty.aligned_subreads.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/lambdaNEB.fa.fai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta.fai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/ccsread.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/fofn.fofn -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreadset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/contig.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.referenceset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim.alignmentset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreadset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/subread.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/reference.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/CollectionMetadata.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/ccsaligned.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/barcode.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/lambda.referenceset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/lambda.alignmentset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/subreadSetWithStats.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/alignment.dataset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/datasets/pbalchemysim1.alignmentset.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/chemistry.xml -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/blasr-output.m4 -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/empty2.bam.pbi -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/weird.fa.fai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/empty2.bam -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util/__init__.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util/ToolRunner.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util/statistics.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util/__pycache__/statistics.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util/__pycache__/decorators.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/util/decorators.py -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util creating /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/__pycache__/__init__.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/__pycache__ copying /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.8_pbcore/build/pbcore/__pycache__/sequence.cpython-38.pyc -> /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/__pycache__ byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/model/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/model/baseRegions.py to baseRegions.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/VcfIO.py to VcfIO.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/GffIO.py to GffIO.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/FofnIO.py to FofnIO.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/FastaIO.py to FastaIO.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/FastqIO.py to FastqIO.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/_utils.py to _utils.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/base.py to base.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/opener.py to opener.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/DataSetErrors.py to DataSetErrors.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/DataSetWriter.py to DataSetWriter.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/DataSetUtils.py to DataSetUtils.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/DataSetValidator.py to DataSetValidator.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/DataSetMetaTypes.py to DataSetMetaTypes.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/DataSetMembers.py to DataSetMembers.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/run_split.py to run_split.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/DataSetReader.py to DataSetReader.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/utils.py to utils.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb/_pbmeta.py to _pbmeta.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb/_pbsample.py to _pbsample.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb/_pbbase.py to _pbbase.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb/DataSetXsd.py to DataSetXsd.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/pyxb/_pbrk.py to _pbrk.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/dataset/DataSetIO.py to DataSetIO.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/BamAlignment.py to BamAlignment.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/_BamSupport.py to _BamSupport.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/_AlignmentMixin.py to _AlignmentMixin.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/BlasrIO.py to BlasrIO.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/BamIO.py to BamIO.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/io/align/PacBioBamIndex.py to PacBioBamIndex.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/chemistry/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/chemistry/chemistry.py to chemistry.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/sequence.py to sequence.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/data/datasets/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util/__init__.py to __init__.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util/ToolRunner.py to ToolRunner.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util/statistics.py to statistics.cpython-38.pyc byte-compiling /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore/util/decorators.py to decorators.cpython-38.pyc running install_egg_info Copying pbcore.egg-info to /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.8/dist-packages/pbcore-2.0.8.egg-info Skipping SOURCES.txt running install_scripts Installing .open script to /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/bin I: pybuild pybuild:310: chmod -x /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore//usr/lib/python3.8/dist-packages/pbcore/data/datasets/*.xml debian/rules override_dh_install make[1]: Entering directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_install mv /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/bin/.open /build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/bin/pbopen make[1]: Leaving directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules override_dh_installdocs make[1]: Entering directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_installdocs -X _source make[1]: Leaving directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_installchangelogs CHANGELOG.org make[1]: Leaving directory '/build/python-pbcore-htf0zu/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' dh_installman -i -O--buildsystem=pybuild dh_python3 -i -O--buildsystem=pybuild dh_installinit -i -O--buildsystem=pybuild dh_installsystemduser -i -O--buildsystem=pybuild dh_perl -i -O--buildsystem=pybuild dh_link -i -O--buildsystem=pybuild dh_strip_nondeterminism -i -O--buildsystem=pybuild dh_compress -i -O--buildsystem=pybuild dh_fixperms -i -O--buildsystem=pybuild dh_missing -i -O--buildsystem=pybuild dh_installdeb -i -O--buildsystem=pybuild dh_gencontrol -i -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python-pbcore-doc: substitution variable ${sphinxdoc:Depends} used, but is not defined dh_md5sums -i -O--buildsystem=pybuild dh_builddeb -i -O--buildsystem=pybuild dpkg-deb: building package 'python3-pbcore' in '../python3-pbcore_1.7.1+git20200430.a127b1e+dfsg-1_all.deb'. dpkg-deb: building package 'python-pbcore-doc' in '../python-pbcore-doc_1.7.1+git20200430.a127b1e+dfsg-1_all.deb'. dpkg-genbuildinfo --build=all dpkg-genchanges --build=all >../python-pbcore_1.7.1+git20200430.a127b1e+dfsg-1_all.changes dpkg-genchanges: info: binary-only arch-indep upload (source code and arch-specific packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: running special hook: sync-out /build/python-pbcore-htf0zu /tmp/python-pbcore-1.7.1+git20200430.a127b1e+dfsg-1byhafbdz I: cleaning package lists and apt cache... W: deleting files in /tmp: tmp1nsxjncv.subreadset.xml W: deleting files in /tmp: tmpc2my6wzv.sam W: deleting files in /tmp: tmp_af09ae9.sam W: deleting files in /tmp: tmpbegln22n.bam W: deleting files in /tmp: tmpqnfouunw.subreadset.xml W: deleting files in /tmp: tmpz9eovfj9.bam W: deleting files in /tmp: pytest-of-builduser W: deleting files in /tmp: tmpsbrhp7h6.bam W: deleting files in /tmp: tmpwk5kts48.subreadset.xml W: deleting files in /tmp: tmpfpedrqkq.gff I: creating tarball... I: done I: removing tempdir /tmp/mmdebstrap.OOKmvftd_M... I: success in 685.4500 seconds md5: python-pbcore-doc_1.7.1+git20200430.a127b1e+dfsg-1_all.deb: OK md5: python3-pbcore_1.7.1+git20200430.a127b1e+dfsg-1_all.deb: OK sha1: python-pbcore-doc_1.7.1+git20200430.a127b1e+dfsg-1_all.deb: OK sha1: python3-pbcore_1.7.1+git20200430.a127b1e+dfsg-1_all.deb: OK sha256: python-pbcore-doc_1.7.1+git20200430.a127b1e+dfsg-1_all.deb: OK sha256: python3-pbcore_1.7.1+git20200430.a127b1e+dfsg-1_all.deb: OK Checksums: OK